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Conserved domains on  [gi|488624259|ref|WP_002560970|]
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MULTISPECIES: DUF3872 domain-containing protein [Bacteroidales]

Protein Classification

DUF3872 domain-containing protein( domain architecture ID 10585680)

DUF3872 domain-containing protein similar to Bacteroides eggerthii conjugative transposon lipoprotein BT_0084

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TraQ_transposon pfam12988
TraQ conjugal transfer protein; TraQ is a conjugative transposon lipoprotein. It is a ...
 33-147 6.44e-74

TraQ conjugal transfer protein; TraQ is a conjugative transposon lipoprotein. It is a component of the type IV secretion system. TraQ belongs to the immunoglobulin superfamily and shares structural similarity to other proteins involved in pili production for bacterial cell attachment. It appears to be upregulated in the presence of host or other bacterial species vs when in culture.


:

Pssm-ID: 432922  Cd Length: 115  Bit Score: 217.14  E-value: 6.44e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488624259   33 DDDMDIQQSYPFTVEVMPVPNKVTKGQTVEIRCELKKEGDFANTLYTIRYFQFEGEGKLKMDNGITFLPNDRYLLENEKF 112
Cdd:pfam12988   1 NDDLDIQQSYPFTVETMPVPKKIAKGETVEIRCELKREGNFEGTEYTIRYFQPDGKGTLKLDDGTVLLPNDRYPLEKEVF 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 488624259  113 RLYYTAEGEEAHNFIVVVEDNFGNSFELEFDFNNR 147
Cdd:pfam12988  81 RLYYTSLSTERQSFDVYVEDNFGQEQQLTFDFNNK 115
 
Name Accession Description Interval E-value
TraQ_transposon pfam12988
TraQ conjugal transfer protein; TraQ is a conjugative transposon lipoprotein. It is a ...
 33-147 6.44e-74

TraQ conjugal transfer protein; TraQ is a conjugative transposon lipoprotein. It is a component of the type IV secretion system. TraQ belongs to the immunoglobulin superfamily and shares structural similarity to other proteins involved in pili production for bacterial cell attachment. It appears to be upregulated in the presence of host or other bacterial species vs when in culture.


Pssm-ID: 432922  Cd Length: 115  Bit Score: 217.14  E-value: 6.44e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488624259   33 DDDMDIQQSYPFTVEVMPVPNKVTKGQTVEIRCELKKEGDFANTLYTIRYFQFEGEGKLKMDNGITFLPNDRYLLENEKF 112
Cdd:pfam12988   1 NDDLDIQQSYPFTVETMPVPKKIAKGETVEIRCELKREGNFEGTEYTIRYFQPDGKGTLKLDDGTVLLPNDRYPLEKEVF 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 488624259  113 RLYYTAEGEEAHNFIVVVEDNFGNSFELEFDFNNR 147
Cdd:pfam12988  81 RLYYTSLSTERQSFDVYVEDNFGQEQQLTFDFNNK 115
 
Name Accession Description Interval E-value
TraQ_transposon pfam12988
TraQ conjugal transfer protein; TraQ is a conjugative transposon lipoprotein. It is a ...
 33-147 6.44e-74

TraQ conjugal transfer protein; TraQ is a conjugative transposon lipoprotein. It is a component of the type IV secretion system. TraQ belongs to the immunoglobulin superfamily and shares structural similarity to other proteins involved in pili production for bacterial cell attachment. It appears to be upregulated in the presence of host or other bacterial species vs when in culture.


Pssm-ID: 432922  Cd Length: 115  Bit Score: 217.14  E-value: 6.44e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 488624259   33 DDDMDIQQSYPFTVEVMPVPNKVTKGQTVEIRCELKKEGDFANTLYTIRYFQFEGEGKLKMDNGITFLPNDRYLLENEKF 112
Cdd:pfam12988   1 NDDLDIQQSYPFTVETMPVPKKIAKGETVEIRCELKREGNFEGTEYTIRYFQPDGKGTLKLDDGTVLLPNDRYPLEKEVF 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 488624259  113 RLYYTAEGEEAHNFIVVVEDNFGNSFELEFDFNNR 147
Cdd:pfam12988  81 RLYYTSLSTERQSFDVYVEDNFGQEQQLTFDFNNK 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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