|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
9-320 |
1.27e-81 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 250.02 E-value: 1.27e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 9 EFWLALLIVVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISFPAMTIIAQYGMVLLLQKIGGNF 88
Cdd:COG1172 18 ELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALGLPI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 89 AVAFALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEQGvmlfkytdADGYDYGLG 168
Cdd:COG1172 98 LLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRAL--------GQGSLLGIP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 169 LPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLLGY 248
Cdd:COG1172 170 VPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGY 249
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446741644 249 ELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASISATAWSQHQNR 320
Cdd:COG1172 250 ELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRA 321
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
44-312 |
5.34e-71 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 221.13 E-value: 5.34e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 44 AMLTILACGLFVVLISGGIDISFPAMTIIAQYGMVLLLQKIGGNFAVAFALAGCIGILLGLINALLVNRLRVPSIIITIS 123
Cdd:cd06579 2 AVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 124 TLNIFYGLLLWLSKGVWLYDFPPWFeqgvmlfKYTDADGYDYGLGLPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRES 203
Cdd:cd06579 82 TMFILRGLALLITGGRPISGLPPLF-------SFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 204 ASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLLGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVM 283
Cdd:cd06579 155 ARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVL 234
|
250 260
....*....|....*....|....*....
gi 446741644 284 QNGLNLLGVSSYWQTLITGIIIVASISAT 312
Cdd:cd06579 235 NNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
16-309 |
9.33e-39 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 139.47 E-value: 9.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 16 IVVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISfpAMTIIAQYGMVLL-LQKIGGNFAVAFAL 94
Cdd:PRK09512 25 LLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLS--VGSLLALTGAVAAsIVGIEVNALVAVPA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 95 AGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGvwlYDFPPWFEQGVMLFKYTdADGYDYGLGLPLIAM 174
Cdd:PRK09512 103 ALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDG---SPINTGFTDNADLFGWF-GIGRPLGIPTPVWIM 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 175 ITVVLLTAFIMNFTSVGRKIYALGGNrESASRI-GFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLLGYELTVL 253
Cdd:PRK09512 179 AIVFLAAWYMLHHTRLGRYIYALGGN-EAATRLsGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAI 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 446741644 254 AAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASI 309
Cdd:PRK09512 258 AAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAV 313
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
14-307 |
1.83e-24 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 101.77 E-value: 1.83e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 14 LLIVVLFVglAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISfpAMTIIAQYGMV--LLLQKIGGNFAVA 91
Cdd:NF040906 12 VAIVVLFQ--ILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLS--VGSVVAFVGAVaaVLMVNWGMPWWLA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 92 FALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEQ--------------------- 150
Cdd:NF040906 88 VLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKissgflpdlfggtglhlltll 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 151 ------------------------------------------GVMLFKYTDADGYdyGLGLPLIAMITVVLLTAFIMNFT 188
Cdd:NF040906 168 lgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaAILFFTYLLASYR--GLPNVLIILGVLILVYSFVTNRT 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 189 SVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLLGYELTVLAAVVLGGTSLLGGRG 268
Cdd:NF040906 246 VIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVG 325
|
330 340 350
....*....|....*....|....*....|....*....
gi 446741644 269 TLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVA 307
Cdd:NF040906 326 TVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLA 364
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
46-308 |
1.32e-18 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 83.85 E-value: 1.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 46 LTILACGL-FVVLISGGIDISFPAMTIIAQYGMVLLLQKIGGNFAVAFALAGCIGILLGLINALLVNRLRVPSIIITIST 124
Cdd:pfam02653 12 YAIAALGLtLIYGIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKINEVIITLLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 125 LNIFYGLLLWLSKGVWLYDFPPWFEQGVMLFKYTDADgydYGLGLPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESA 204
Cdd:pfam02653 92 NLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLS---FAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGENEEAA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 205 SRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDS-LLGYELTVLAAVVLGGTsllggrGTLTGTLLGVVLLAVM 283
Cdd:pfam02653 169 RAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNfGVGLGLDAIAAVVLGGA------GSPIGVVIGSLIIGLV 242
|
250 260
....*....|....*....|....*.
gi 446741644 284 QN-GLNLLGVSSYWQTLITGIIIVAS 308
Cdd:pfam02653 243 QSlGLGALGSPPELSLLVLGALLILV 268
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
9-320 |
1.27e-81 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 250.02 E-value: 1.27e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 9 EFWLALLIVVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISFPAMTIIAQYGMVLLLQKIGGNF 88
Cdd:COG1172 18 ELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALGLPI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 89 AVAFALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEQGvmlfkytdADGYDYGLG 168
Cdd:COG1172 98 LLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRAL--------GQGSLLGIP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 169 LPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLLGY 248
Cdd:COG1172 170 VPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGY 249
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446741644 249 ELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASISATAWSQHQNR 320
Cdd:COG1172 250 ELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRA 321
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
44-312 |
5.34e-71 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 221.13 E-value: 5.34e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 44 AMLTILACGLFVVLISGGIDISFPAMTIIAQYGMVLLLQKIGGNFAVAFALAGCIGILLGLINALLVNRLRVPSIIITIS 123
Cdd:cd06579 2 AVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 124 TLNIFYGLLLWLSKGVWLYDFPPWFeqgvmlfKYTDADGYDYGLGLPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRES 203
Cdd:cd06579 82 TMFILRGLALLITGGRPISGLPPLF-------SFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 204 ASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLLGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVM 283
Cdd:cd06579 155 ARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVL 234
|
250 260
....*....|....*....|....*....
gi 446741644 284 QNGLNLLGVSSYWQTLITGIIIVASISAT 312
Cdd:cd06579 235 NNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
12-321 |
1.67e-44 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 156.43 E-value: 1.67e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 12 LALLIVVLFVGlAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISfpAMTIIAQYGMV--LLLQKIGGNFA 89
Cdd:COG4214 29 IALVVIWIVFQ-ILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLS--VGSVSGFVGAVaaVLMVNWGLPWW 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 90 VAFALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEQ------------------- 150
Cdd:COG4214 106 LAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAigngflpdilgtlswvlga 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 151 ---------------------------------------GVMLFKYTDADgyDYGLGLPLIAMITVVLLTAFIMNFTSVG 191
Cdd:COG4214 186 vavaayvalqlrsrrrrrryglpveplwlfvlklallavLILGAVYLLNS--YRGIPIVVLILLVLVVVYTFVLTRTVFG 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 192 RKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLLGYELTVLAAVVLGGTSLLGGRGTLT 271
Cdd:COG4214 264 RHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTVY 343
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 446741644 272 GTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASISATAWSQHQNRS 321
Cdd:COG4214 344 GAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRRGA 393
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
14-309 |
5.58e-44 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 153.55 E-value: 5.58e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 14 LLIVVLFVGLAWRsdeFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISFPAmtIIAQYGMVLLLQKIGGNFAVAFA 93
Cdd:COG4158 37 ILLCIGFELLTPN---FLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGS--ILAASAVVAVLVSLLPGLGLLGI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 94 LAGCI-GILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEqgvmlfkytdADGYDYGLGLPLI 172
Cdd:COG4158 112 PAALLvGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFA----------WIGNGYLLGIPWL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 173 AMIT--VVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSL-LGYE 249
Cdd:COG4158 182 VVIAlaVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLQLgQGYE 261
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 250 LTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASI 309
Cdd:COG4158 262 LDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAV 321
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
16-309 |
9.33e-39 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 139.47 E-value: 9.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 16 IVVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISfpAMTIIAQYGMVLL-LQKIGGNFAVAFAL 94
Cdd:PRK09512 25 LLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLS--VGSLLALTGAVAAsIVGIEVNALVAVPA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 95 AGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGvwlYDFPPWFEQGVMLFKYTdADGYDYGLGLPLIAM 174
Cdd:PRK09512 103 ALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDG---SPINTGFTDNADLFGWF-GIGRPLGIPTPVWIM 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 175 ITVVLLTAFIMNFTSVGRKIYALGGNrESASRI-GFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLLGYELTVL 253
Cdd:PRK09512 179 AIVFLAAWYMLHHTRLGRYIYALGGN-EAATRLsGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAI 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 446741644 254 AAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASI 309
Cdd:PRK09512 258 AAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAV 313
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
9-309 |
6.03e-38 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 137.50 E-value: 6.03e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 9 EFWLALLIVVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISfpAMTIIAQYGMVL-LLQKIGGN 87
Cdd:PRK11285 29 QYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLS--VASVVAFAGVVTaVVINATES 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 88 FAVAFALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKG--VWLYDfPPWFEQGVMLFkytdadgydY 165
Cdd:PRK11285 107 LWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGkaVGISD-ERFFALGYANF---------F 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 166 GLGLPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSL 245
Cdd:PRK11285 177 GVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTS 256
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446741644 246 LGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASI 309
Cdd:PRK11285 257 IGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAV 320
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
14-310 |
8.06e-38 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 136.83 E-value: 8.06e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 14 LLIVVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISFPAmtIIAQYGMVLLLQKIGGNFAVAFA 93
Cdd:PRK09699 17 ILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGA--ILALSGMVTAKLMLAGVDPFLAA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 94 LAGCI--GILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPpwfeqgvmlFKYTDADGYD-YGLGLP 170
Cdd:PRK09699 95 LIGGVlvGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFS---------FDFVNFFAASvIGIPVP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 171 LIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLLGYEL 250
Cdd:PRK09699 166 VIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFET 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 251 TVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASIS 310
Cdd:PRK09699 246 YAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVA 305
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
4-307 |
8.84e-30 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 115.98 E-value: 8.84e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 4 LKKRHEFWLALLIVVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISFPAMTIIAQYGMVLLLQK 83
Cdd:PRK15432 5 IQNNRELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 84 iGGNFAVAFALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEQ-GVMLFkytdadg 162
Cdd:PRK15432 85 -GYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQlSAPIL------- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 163 ydygLGLPLIAMITVVLL--TAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTV 240
Cdd:PRK15432 157 ----LGISPIGWLTLILIlaMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFI 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446741644 241 APDSLLGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVA 307
Cdd:PRK15432 233 PNQTGTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLG 299
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
13-309 |
5.34e-27 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 107.73 E-value: 5.34e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 13 ALLIVVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISFPAmtIIAQYGMVL--LLQKIGGNFAV 90
Cdd:PRK11618 12 IGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGS--VIAFTGVFLakLIGDYGWSPLL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 91 AFALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEQGVMLFKYTDadgyDYGLGLP 170
Cdd:PRK11618 90 AFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSLAWKLPG----GGRLSAM 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 171 LIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLLGYEL 250
Cdd:PRK11618 166 ALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVEL 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 251 TVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLG-VSSYWQTLITGIIIVASI 309
Cdd:PRK11618 246 DAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGtLSSWWTKIVIGILLFVFI 305
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
14-307 |
1.83e-24 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 101.77 E-value: 1.83e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 14 LLIVVLFVglAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISfpAMTIIAQYGMV--LLLQKIGGNFAVA 91
Cdd:NF040906 12 VAIVVLFQ--ILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLS--VGSVVAFVGAVaaVLMVNWGMPWWLA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 92 FALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEQ--------------------- 150
Cdd:NF040906 88 VLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKissgflpdlfggtglhlltll 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 151 ------------------------------------------GVMLFKYTDADGYdyGLGLPLIAMITVVLLTAFIMNFT 188
Cdd:NF040906 168 lgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaAILFFTYLLASYR--GLPNVLIILGVLILVYSFVTNRT 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 189 SVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLLGYELTVLAAVVLGGTSLLGGRG 268
Cdd:NF040906 246 VIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVG 325
|
330 340 350
....*....|....*....|....*....|....*....
gi 446741644 269 TLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVA 307
Cdd:NF040906 326 TVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLA 364
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
14-310 |
3.95e-24 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 100.53 E-value: 3.95e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 14 LLIVVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISFPAMTIIAQYGMVLLLQKIGG------- 86
Cdd:PRK09478 20 VVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNankvfpe 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 87 ----NFAVAFALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLllwlskGVWLYDFPP-----WFEQGVMLFKY 157
Cdd:PRK09478 100 latmPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGI------NSLYYDFVGaspisGFDSGFSTFAQ 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 158 TDADGYDYGLGLPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTV 237
Cdd:PRK09478 174 GFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRI 253
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446741644 238 MTVAPDSLLGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASIS 310
Cdd:PRK09478 254 GSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVA 326
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
9-319 |
4.96e-19 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 86.04 E-value: 4.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 9 EFWLALLIVVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISFPAMTIIAQYGMVLLLQkIGGNF 88
Cdd:PRK15038 8 ELALAALLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQ-SGVPM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 89 AVAFALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLS--KGVWLYD----FPPWFeqgvmlfkyTD-AD 161
Cdd:PRK15038 87 PLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSgmAGATGYEgiggFPMAF---------TDfAN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 162 GYDYGLGLPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVA 241
Cdd:PRK15038 158 LDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSAR 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446741644 242 PDSLLGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASISATAWSQHQN 319
Cdd:PRK15038 238 SDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHRH 315
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
46-308 |
1.32e-18 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 83.85 E-value: 1.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 46 LTILACGL-FVVLISGGIDISFPAMTIIAQYGMVLLLQKIGGNFAVAFALAGCIGILLGLINALLVNRLRVPSIIITIST 124
Cdd:pfam02653 12 YAIAALGLtLIYGIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKINEVIITLLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 125 LNIFYGLLLWLSKGVWLYDFPPWFEQGVMLFKYTDADgydYGLGLPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESA 204
Cdd:pfam02653 92 NLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLS---FAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGENEEAA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 205 SRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDS-LLGYELTVLAAVVLGGTsllggrGTLTGTLLGVVLLAVM 283
Cdd:pfam02653 169 RAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNfGVGLGLDAIAAVVLGGA------GSPIGVVIGSLIIGLV 242
|
250 260
....*....|....*....|....*.
gi 446741644 284 QN-GLNLLGVSSYWQTLITGIIIVAS 308
Cdd:pfam02653 243 QSlGLGALGSPPELSLLVLGALLILV 268
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
38-307 |
5.14e-13 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 68.18 E-value: 5.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 38 DLANNYAMLTILACGLFVVLISGGIdISF--PAMTIIAQYGMVLLLQKIGGNFAVAFALAGCIGILLGLINALLVNRLR- 114
Cdd:COG4177 6 SLLTLILIYAILALGLNLLLGYTGL-LSLghAAFFGIGAYAAALLTTHLGLPFWLALLLAGLVAALLGLLIGLPALRLRg 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 115 VPSIIITISTLNIFYGLLL---WLSKGVW-LYDFPPWFEQGVMLfkYTDADGYdyglGLPLIAMITVVLLTAFIMNfTSV 190
Cdd:COG4177 85 DYLAIATLAFAEIVRLLALnleSLTGGADgLSGIPRPTLFGLDL--GSPLAFY----YLVLALLVLVLLLLRRLVR-SRF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 191 GRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVAPDSLlGYELTVLAAVVLggtsLLGGRGTL 270
Cdd:COG4177 158 GRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESF-SFLLSIEILLMV----VLGGLGSL 232
|
250 260 270
....*....|....*....|....*....|....*..
gi 446741644 271 TGTLLGVVLLAVMQNGLNLLGvssYWQTLITGIIIVA 307
Cdd:COG4177 233 LGPVLGAVLLVLLPELLRSLP---EYRLLIFGLLLIL 266
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
75-307 |
1.66e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 63.62 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 75 YGMVLLLQKIGGNFAVAFALAGCIGILLGLINALLVNRLR-VPSIIITISTLNIFYGLLL---WLSKGvwlydfppwfEQ 150
Cdd:cd06581 34 YTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRgVYFAIATLAFAEIVRLLALnwsSLTGG----------SN 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 151 GVMLFKYTDADGYDYGLGLPLIAMITVVLLTAFIMNF----TSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMS 226
Cdd:cd06581 104 GLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRrlvrSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALA 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 227 GAAGVVQSWTVMTVAPDSlLGYELTVLAAVVLggtsLLGGRGTLTGTLLGVVLLAVMQNGLNLLGvsSYWQTLITGIIIV 306
Cdd:cd06581 184 GLAGALYAHYLGFVSPES-FGFALSIELLLMV----VLGGLGSLLGPVLGAALLVLLPELLRSLG--PGLRLLVFGLLLI 256
|
.
gi 446741644 307 A 307
Cdd:cd06581 257 L 257
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
44-306 |
7.58e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 61.68 E-value: 7.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 44 AMLTILACGLFVVL-ISGGIDISFPAMTIIAQYGMVLLLQKIGGNFAVAFALAGCIGILLG-LINALLVNRLR---VPSI 118
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGvLLERLVLRPLRgapLLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 119 IITISTLNIFYGLLLWLSKGVWLYDFPPWFEQGVMLFkytDADGYDYGLGLPLIAMITVVLLTAFiMNFTSVGRKIYALG 198
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELG---GVTIPPYRLFIIAVALVLLAALYLF-LRRTRLGRAIRAVA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 199 GNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSwTVMTVAPDSLLGYELTVLAAVVLGGTsllggrGTLTGTLLGVV 278
Cdd:cd06582 162 QNPEAARLLGINVRRVFALTFALGAALAGLAGVLLA-PITGVSPTMGLLLLLKAFAAVVLGGL------GSIPGAVVGGL 234
|
250 260
....*....|....*....|....*...
gi 446741644 279 LLAVMQNGLNLLGVSSYWQTLITGIIIV 306
Cdd:cd06582 235 LLGLAESLAAAYLSSGYKDAVAFVLLIL 262
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
44-306 |
3.41e-10 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 59.69 E-value: 3.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 44 AMLTILACGLFVVL-ISGGIDISFPAMTIIAQYGMVLLLQKIGGNFAVAFALAGCIGILLG-LINALLVNRLR----VPS 117
Cdd:COG0559 16 SIYALIALGLTLIFgVMGVINFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGvLLERLVIRPLRgappLAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 118 IIITISTLNIFYGLLLWLSkGVWLYDFPPWFEQGVMLFkytDADGYDYGLGLPLIAMITVVLLTAFImNFTSVGRKIYAL 197
Cdd:COG0559 96 LLATIGLSLVLQGLVLLIF-GADPRSFPALLSGSVELG---GVSIPAYRLFIIVVALVLLAALWLFL-RRTRLGLAMRAV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 198 GGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSwTVMTVAPDSLLGYELTVLAAVVLGGTsllggrGTLTGTLLGV 277
Cdd:COG0559 171 AQNREAARLMGINVDRVIALTFALGAALAGLAGVLLA-PIYSVSPTMGFLLGLKAFAAVVLGGL------GSIPGAVVGG 243
|
250 260
....*....|....*....|....*....
gi 446741644 278 VLLAVMQNGLNLLGVSSYWQTLITGIIIV 306
Cdd:COG0559 244 LLLGLAESLGAAYLPSGYKDVVAFVLLIL 272
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
85-305 |
1.71e-08 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 54.37 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 85 GGNFAVAFALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLskgvwlydfppwfeqgvmlfkytdadgyd 164
Cdd:cd06580 47 TGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLTSYL----------------------------- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 165 yglglpLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTV-MTVAPD 243
Cdd:cd06580 98 ------LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVLGVqGRFTEG 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446741644 244 SLLGYELTVLAAVVLGGTSLLggrgtltGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIII 305
Cdd:cd06580 172 MSAGYGFIAIAVALLGRWNPL-------GILLAALLFGALEAGGIALQRSGGVPSELVQVLP 226
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
79-309 |
1.87e-08 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 54.59 E-value: 1.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 79 LLLQKIGGNFAVAFALAGCIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGvwlYDFPPWFEQGVMLFKYT 158
Cdd:cd06574 37 AILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILIMIGLYSINLRIMGG---PNIPLGTRDTLLGLLLL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446741644 159 DADGYDYGLGLPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVM 238
Cdd:cd06574 114 FGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQG 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446741644 239 TVAPDSLLGYELTVLAAVVLGGTSLLG--GRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASI 309
Cdd:cd06574 194 FADVNMGIGTGVIGLAAVIIGGAIVGRrtIKASILGVIIGAILYRIALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| |
