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Conserved domains on  [gi|446410506|ref|WP_000488361|]
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MULTISPECIES: type II secretion system-associated lipoprotein [Leptospira]

Protein Classification

Spiro_T2SS_lipo family protein( domain architecture ID 10025157)

Spiro_T2SS_lipo family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spiro_T2SS_lipo TIGR04410
type II secretion system-associated lipoprotein; Members of this family occur only in ...
 2-120 2.30e-60

type II secretion system-associated lipoprotein; Members of this family occur only in spirochetes (Leptospira, Leptonema, Turneriella), as part of a type II secretion system (T2SS) cassette. Properly extended gene models always include an N-terminal signal sequence ending with a Cys residue, suggesting this small protein (about 100 amino acids) is a lipoprotein.


:

Pssm-ID: 275203  Cd Length: 117  Bit Score: 181.09  E-value: 2.30e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446410506    2 FRIAVFLLPSVFIFlaGCGNRLIRKDAVAQINEHYSEKIYYLTKDKKVSNTETFKKGMLVRIYVESTPSMVKIKCYPADH 81
Cdd:TIGR04410   1 IRFVVFLLALVFSF--GCGSRLIKKERLREINEYYQGKIYALKEDIKVSQTETFKKGTLVKIYVESTPSLVKVKAYPADQ 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 446410506   82 KREYAIGRMILYQLNDEYSGKKITVEDLDKLIANELVEY 120
Cdd:TIGR04410  79 KRESAIGKLILYQVNDDFKKKTIELEDLRKIIANELTEV 117
 
Name Accession Description Interval E-value
Spiro_T2SS_lipo TIGR04410
type II secretion system-associated lipoprotein; Members of this family occur only in ...
 2-120 2.30e-60

type II secretion system-associated lipoprotein; Members of this family occur only in spirochetes (Leptospira, Leptonema, Turneriella), as part of a type II secretion system (T2SS) cassette. Properly extended gene models always include an N-terminal signal sequence ending with a Cys residue, suggesting this small protein (about 100 amino acids) is a lipoprotein.


Pssm-ID: 275203  Cd Length: 117  Bit Score: 181.09  E-value: 2.30e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446410506    2 FRIAVFLLPSVFIFlaGCGNRLIRKDAVAQINEHYSEKIYYLTKDKKVSNTETFKKGMLVRIYVESTPSMVKIKCYPADH 81
Cdd:TIGR04410   1 IRFVVFLLALVFSF--GCGSRLIKKERLREINEYYQGKIYALKEDIKVSQTETFKKGTLVKIYVESTPSLVKVKAYPADQ 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 446410506   82 KREYAIGRMILYQLNDEYSGKKITVEDLDKLIANELVEY 120
Cdd:TIGR04410  79 KRESAIGKLILYQVNDDFKKKTIELEDLRKIIANELTEV 117
 
Name Accession Description Interval E-value
Spiro_T2SS_lipo TIGR04410
type II secretion system-associated lipoprotein; Members of this family occur only in ...
 2-120 2.30e-60

type II secretion system-associated lipoprotein; Members of this family occur only in spirochetes (Leptospira, Leptonema, Turneriella), as part of a type II secretion system (T2SS) cassette. Properly extended gene models always include an N-terminal signal sequence ending with a Cys residue, suggesting this small protein (about 100 amino acids) is a lipoprotein.


Pssm-ID: 275203  Cd Length: 117  Bit Score: 181.09  E-value: 2.30e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446410506    2 FRIAVFLLPSVFIFlaGCGNRLIRKDAVAQINEHYSEKIYYLTKDKKVSNTETFKKGMLVRIYVESTPSMVKIKCYPADH 81
Cdd:TIGR04410   1 IRFVVFLLALVFSF--GCGSRLIKKERLREINEYYQGKIYALKEDIKVSQTETFKKGTLVKIYVESTPSLVKVKAYPADQ 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 446410506   82 KREYAIGRMILYQLNDEYSGKKITVEDLDKLIANELVEY 120
Cdd:TIGR04410  79 KRESAIGKLILYQVNDDFKKKTIELEDLRKIIANELTEV 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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