NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|158262028|ref|NP_998775|]
View 

uncharacterized protein C6orf136 homolog [Rattus norvegicus]

Protein Classification

DUF2358 domain-containing protein( domain architecture ID 10562819)

DUF2358 domain-containing protein belonging to the nuclear transport factor 2 superfamily, similar to human protein C6orf136

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2358 pfam10184
Uncharacterized conserved protein (DUF2358); DUF2358 is a family of conserved proteins found ...
 145-270 3.50e-43

Uncharacterized conserved protein (DUF2358); DUF2358 is a family of conserved proteins found from plants to humans. The function is unknown.


:

Pssm-ID: 370865  Cd Length: 113  Bit Score: 143.94  E-value: 3.50e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262028  145 AVMHERLRQELPTLFLRSHDYTIYSMDVEFINEIlnVRTKGRTFYVMSLTLCRFLAWNYFAQFRLEILQLTRHPEnWTLQ 224
Cdd:pfam10184   1 ADVVEILREDLPRLFPKDQDYSIYSEDVYFIDPL--NKFRGIDRYKKMFWAIRFLGRLFFADISLELHDITQHGD-NTIK 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 158262028  225 ARWRLIGLPVHmlflrFYRRDKedlyrTFDAFSTFYLNSSGLICRH 270
Cdd:pfam10184  78 TRWTLRGIPPL-----PWKPRI-----TFDGTSEYKLNADGLIYSH 113
 
Name Accession Description Interval E-value
DUF2358 pfam10184
Uncharacterized conserved protein (DUF2358); DUF2358 is a family of conserved proteins found ...
 145-270 3.50e-43

Uncharacterized conserved protein (DUF2358); DUF2358 is a family of conserved proteins found from plants to humans. The function is unknown.


Pssm-ID: 370865  Cd Length: 113  Bit Score: 143.94  E-value: 3.50e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262028  145 AVMHERLRQELPTLFLRSHDYTIYSMDVEFINEIlnVRTKGRTFYVMSLTLCRFLAWNYFAQFRLEILQLTRHPEnWTLQ 224
Cdd:pfam10184   1 ADVVEILREDLPRLFPKDQDYSIYSEDVYFIDPL--NKFRGIDRYKKMFWAIRFLGRLFFADISLELHDITQHGD-NTIK 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 158262028  225 ARWRLIGLPVHmlflrFYRRDKedlyrTFDAFSTFYLNSSGLICRH 270
Cdd:pfam10184  78 TRWTLRGIPPL-----PWKPRI-----TFDGTSEYKLNADGLIYSH 113
 
Name Accession Description Interval E-value
DUF2358 pfam10184
Uncharacterized conserved protein (DUF2358); DUF2358 is a family of conserved proteins found ...
 145-270 3.50e-43

Uncharacterized conserved protein (DUF2358); DUF2358 is a family of conserved proteins found from plants to humans. The function is unknown.


Pssm-ID: 370865  Cd Length: 113  Bit Score: 143.94  E-value: 3.50e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158262028  145 AVMHERLRQELPTLFLRSHDYTIYSMDVEFINEIlnVRTKGRTFYVMSLTLCRFLAWNYFAQFRLEILQLTRHPEnWTLQ 224
Cdd:pfam10184   1 ADVVEILREDLPRLFPKDQDYSIYSEDVYFIDPL--NKFRGIDRYKKMFWAIRFLGRLFFADISLELHDITQHGD-NTIK 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 158262028  225 ARWRLIGLPVHmlflrFYRRDKedlyrTFDAFSTFYLNSSGLICRH 270
Cdd:pfam10184  78 TRWTLRGIPPL-----PWKPRI-----TFDGTSEYKLNADGLIYSH 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH