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Conserved domains on  [gi|47087339|ref|NP_998554|]
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transmembrane 9 superfamily member 3 precursor [Danio rerio]

Protein Classification

transmembrane 9 family protein( domain architecture ID 10503172)

transmembrane 9 (TM9) family protein similar to human TM9 member 1 (hMP70) that plays a role in autophagy, and to Dictyostelium discoideum phagocytic receptors that are involved in adhesion and phagocytosis

Gene Ontology:  GO:0016020
PubMed:  12857872
TCDB:  8.A.68

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
EMP70 pfam02990
Endomembrane protein 70;
54-523 0e+00

Endomembrane protein 70;


:

Pssm-ID: 460774  Cd Length: 512  Bit Score: 590.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339    54 TYKYFSL-PFCVGTKKTISHyhETLGEALQGVELEFSGLDIKFKEEVLQTTYCDIELDKPKRDAFVYAIKNHYWYQMYID 132
Cdd:pfam02990   1 PYDYYDLlPFCPPEDGIKKE--ESLGEILFGDRIYNSPYELKFGKDETCKVLCTKTLTKEDVKFLKELIKNGYRVNWIID 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   133 DLPIW----------GIVGEADENGEDYYLWTYKKLEIGHN------GNRIVDVNLT-----------SEGKVKLVPNTR 185
Cdd:pfam02990  79 NLPVAttfysagfplGFVGSEDTDDNKYYLNNHLDFVIRYHkvsgdeGYRIVGFEVYpksvkhedacpKNPLEVEDEDTT 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   186 IPMSYSVKWKKSD-VKFEDRFDKYLDpsFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMDrd 264
Cdd:pfam02990 159 IPFTYSVYWRESDdVPWATRWDKYLH--VPDPKIHWFSIINSLVIVLFLSGIVAMILLRTLRKDIARYNELDDEEEED-- 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   265 pGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFSVSLIVIILAMIEDLY-TERGSMLSTAIFVYAATSPVNGYFGGSL 343
Cdd:pfam02990 235 -QEESGWKLVHGDVFRPPSHPMLLSVLVGSGVQLLFMALGTILFALLGFLSpSNRGSLLTAMIVLYVLTGFVAGYVSARL 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   344 YAKQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICLFVILPLNLVGTILGRNlSGQPNF 423
Cdd:pfam02990 314 YKTFGGENWKRNILLTALLFPGLVFIIFFILNLFLWAKGSSGAIPFGTLLALLLLWFLISVPLSLIGSYFGFK-KPAIEH 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   424 PCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFL 503
Cdd:pfam02990 393 PVRTNQIPRQIPPQPWYLKPLPSMLLGGILPFGAIFIELYFIFTSLWLNKIYYMFGFLFLVFIILIITTAEVTILLTYFQ 472
                         490       500
                  ....*....|....*....|
gi 47087339   504 LNAEDYRWQWTSFLSAASTA 523
Cdd:pfam02990 473 LCAEDYRWWWRSFLTGGSTA 492
 
Name Accession Description Interval E-value
EMP70 pfam02990
Endomembrane protein 70;
54-523 0e+00

Endomembrane protein 70;


Pssm-ID: 460774  Cd Length: 512  Bit Score: 590.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339    54 TYKYFSL-PFCVGTKKTISHyhETLGEALQGVELEFSGLDIKFKEEVLQTTYCDIELDKPKRDAFVYAIKNHYWYQMYID 132
Cdd:pfam02990   1 PYDYYDLlPFCPPEDGIKKE--ESLGEILFGDRIYNSPYELKFGKDETCKVLCTKTLTKEDVKFLKELIKNGYRVNWIID 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   133 DLPIW----------GIVGEADENGEDYYLWTYKKLEIGHN------GNRIVDVNLT-----------SEGKVKLVPNTR 185
Cdd:pfam02990  79 NLPVAttfysagfplGFVGSEDTDDNKYYLNNHLDFVIRYHkvsgdeGYRIVGFEVYpksvkhedacpKNPLEVEDEDTT 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   186 IPMSYSVKWKKSD-VKFEDRFDKYLDpsFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMDrd 264
Cdd:pfam02990 159 IPFTYSVYWRESDdVPWATRWDKYLH--VPDPKIHWFSIINSLVIVLFLSGIVAMILLRTLRKDIARYNELDDEEEED-- 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   265 pGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFSVSLIVIILAMIEDLY-TERGSMLSTAIFVYAATSPVNGYFGGSL 343
Cdd:pfam02990 235 -QEESGWKLVHGDVFRPPSHPMLLSVLVGSGVQLLFMALGTILFALLGFLSpSNRGSLLTAMIVLYVLTGFVAGYVSARL 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   344 YAKQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICLFVILPLNLVGTILGRNlSGQPNF 423
Cdd:pfam02990 314 YKTFGGENWKRNILLTALLFPGLVFIIFFILNLFLWAKGSSGAIPFGTLLALLLLWFLISVPLSLIGSYFGFK-KPAIEH 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   424 PCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFL 503
Cdd:pfam02990 393 PVRTNQIPRQIPPQPWYLKPLPSMLLGGILPFGAIFIELYFIFTSLWLNKIYYMFGFLFLVFIILIITTAEVTILLTYFQ 472
                         490       500
                  ....*....|....*....|
gi 47087339   504 LNAEDYRWQWTSFLSAASTA 523
Cdd:pfam02990 473 LCAEDYRWWWRSFLTGGSTA 492
 
Name Accession Description Interval E-value
EMP70 pfam02990
Endomembrane protein 70;
54-523 0e+00

Endomembrane protein 70;


Pssm-ID: 460774  Cd Length: 512  Bit Score: 590.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339    54 TYKYFSL-PFCVGTKKTISHyhETLGEALQGVELEFSGLDIKFKEEVLQTTYCDIELDKPKRDAFVYAIKNHYWYQMYID 132
Cdd:pfam02990   1 PYDYYDLlPFCPPEDGIKKE--ESLGEILFGDRIYNSPYELKFGKDETCKVLCTKTLTKEDVKFLKELIKNGYRVNWIID 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   133 DLPIW----------GIVGEADENGEDYYLWTYKKLEIGHN------GNRIVDVNLT-----------SEGKVKLVPNTR 185
Cdd:pfam02990  79 NLPVAttfysagfplGFVGSEDTDDNKYYLNNHLDFVIRYHkvsgdeGYRIVGFEVYpksvkhedacpKNPLEVEDEDTT 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   186 IPMSYSVKWKKSD-VKFEDRFDKYLDpsFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMDrd 264
Cdd:pfam02990 159 IPFTYSVYWRESDdVPWATRWDKYLH--VPDPKIHWFSIINSLVIVLFLSGIVAMILLRTLRKDIARYNELDDEEEED-- 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   265 pGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFSVSLIVIILAMIEDLY-TERGSMLSTAIFVYAATSPVNGYFGGSL 343
Cdd:pfam02990 235 -QEESGWKLVHGDVFRPPSHPMLLSVLVGSGVQLLFMALGTILFALLGFLSpSNRGSLLTAMIVLYVLTGFVAGYVSARL 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   344 YAKQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICLFVILPLNLVGTILGRNlSGQPNF 423
Cdd:pfam02990 314 YKTFGGENWKRNILLTALLFPGLVFIIFFILNLFLWAKGSSGAIPFGTLLALLLLWFLISVPLSLIGSYFGFK-KPAIEH 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47087339   424 PCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFL 503
Cdd:pfam02990 393 PVRTNQIPRQIPPQPWYLKPLPSMLLGGILPFGAIFIELYFIFTSLWLNKIYYMFGFLFLVFIILIITTAEVTILLTYFQ 472
                         490       500
                  ....*....|....*....|
gi 47087339   504 LNAEDYRWQWTSFLSAASTA 523
Cdd:pfam02990 473 LCAEDYRWWWRSFLTGGSTA 492
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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