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Conserved domains on  [gi|47085975|ref|NP_998352|]
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dehydrodolichyl diphosphate synthase complex subunit DHDDS [Danio rerio]

Protein Classification

undecaprenyl diphosphate synthase family protein( domain architecture ID 10087541)

undecaprenyl diphosphate synthase (UPPS) family protein catalyzes consecutive condensation reactions of farnesyl diphosphate (FPP) with specific numbers of isopentenyl diphosphate (IPP) to form long-chain polyprenyl diphosphates

CATH:  3.40.1180.10
EC:  2.5.1.-
Gene Ontology:  GO:0004659|GO:0016094
PubMed:  16900467|12636086|12135472
SCOP:  4003318

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 28-248 9.42e-124

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


:

Pssm-ID: 259850  Cd Length: 219  Bit Score: 353.99  E-value: 9.42e-124
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  28 HVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQKFSRLLte 107
Cdd:cd00475   1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKEL-- 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975 108 qENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIKSSDVSEVL 187
Cdd:cd00475  79 -EELHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVKAGELDPEDITEEL 157

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 47085975 188 LSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQ 248
Cdd:cd00475 158 ISKHLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQ 218
 
Name Accession Description Interval E-value
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 28-248 9.42e-124

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 353.99  E-value: 9.42e-124
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  28 HVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQKFSRLLte 107
Cdd:cd00475   1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKEL-- 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975 108 qENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIKSSDVSEVL 187
Cdd:cd00475  79 -EELHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVKAGELDPEDITEEL 157

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 47085975 188 LSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQ 248
Cdd:cd00475 158 ISKHLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQ 218
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 32-252 1.69e-112

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 325.47  E-value: 1.69e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975    32 IMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQKFsrLLTEQENL 111
Cdd:pfam01255   1 IMDGNRRWAKKRGLPREAGHRAGAEALREVLEWCLELGIKYLTLYAFSTENWKRPKEEVDALMELLKEEY--LRRELPEL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   112 EKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAwgVEQGLIKSSDVSEVLLSEC 191
Cdd:pfam01255  79 HKNGVRVRVIGDLSLLPEDLQEAIEEAEEATKNNTGLTLNIALNYGGRDEIVDAVRKIV--KEGKKLDPEDIDEELISSH 156

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 47085975   192 LYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:pfam01255 157 LYTAGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRKEDLLRAIRDYQRRER 217
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
13-259 7.44e-105

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 306.98  E-value: 7.44e-105
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  13 ERLTANILKAGPMPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDG 92
Cdd:COG0020   3 ERALLPEIDPGNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWKRPKEEVSF 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  93 LMELARQKFSRlltEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWG 172
Cdd:COG0020  83 LMGLLREYLRR---ELDELHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTGLTLNIALNYGGRWEIVDAVRKIARD 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975 173 VEQGLIKSSDVSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:COG0020 160 VAAGELDPEDIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQRRER 239


                ....*..
gi 47085975 253 SIQKARE 259
Cdd:COG0020 240 RFGGTSE 246
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 27-255 1.03e-88

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 265.42  E-value: 1.03e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975    27 KHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQKFSRllt 106
Cdd:TIGR00055   1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDR--- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   107 EQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIKSSDVSEV 186
Cdd:TIGR00055  78 EVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEE 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47085975   187 LLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHRSIQ 255
Cdd:TIGR00055 158 TLNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226
PRK14831 PRK14831
undecaprenyl pyrophosphate synthase; Provisional
 20-252 4.07e-75

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184841  Cd Length: 249  Bit Score: 231.37  E-value: 4.07e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   20 LKAGPMPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELarq 99
Cdd:PRK14831  15 LDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTL--- 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  100 kFSRLL-TEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLI 178
Cdd:PRK14831  92 -FERVLrRELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQGEL 170

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 47085975  179 KSSDVSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:PRK14831 171 DPSEIDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRER 244
 
Name Accession Description Interval E-value
Cis_IPPS cd00475
Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) ...
 28-248 9.42e-124

Cis (Z)-Isoprenyl Diphosphate Synthases; Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.


Pssm-ID: 259850  Cd Length: 219  Bit Score: 353.99  E-value: 9.42e-124
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  28 HVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQKFSRLLte 107
Cdd:cd00475   1 HVAIIMDGNRRWAKKRGLPRTEGHRAGAEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDALMKLLREYLEKEL-- 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975 108 qENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIKSSDVSEVL 187
Cdd:cd00475  79 -EELHKNGVRLRVIGDLSLLPEDLREAIEEAEEATKNNTGLTLNIALNYGGRDEIVRAVRKIARDVKAGELDPEDITEEL 157

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 47085975 188 LSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQ 248
Cdd:cd00475 158 ISKHLYTADLPDPDLLIRTSGEQRLSNFLLWQSAYAELYFTDVLWPDFRKEDLLRAILDYQ 218
Prenyltransf pfam01255
Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family ...
 32-252 1.69e-112

Putative undecaprenyl diphosphate synthase; Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.


Pssm-ID: 460138  Cd Length: 220  Bit Score: 325.47  E-value: 1.69e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975    32 IMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQKFsrLLTEQENL 111
Cdd:pfam01255   1 IMDGNRRWAKKRGLPREAGHRAGAEALREVLEWCLELGIKYLTLYAFSTENWKRPKEEVDALMELLKEEY--LRRELPEL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   112 EKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAwgVEQGLIKSSDVSEVLLSEC 191
Cdd:pfam01255  79 HKNGVRVRVIGDLSLLPEDLQEAIEEAEEATKNNTGLTLNIALNYGGRDEIVDAVRKIV--KEGKKLDPEDIDEELISSH 156

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 47085975   192 LYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:pfam01255 157 LYTAGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRKEDLLRAIRDYQRRER 217
UppS COG0020
Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];
13-259 7.44e-105

Undecaprenyl pyrophosphate synthase [Lipid transport and metabolism];


Pssm-ID: 439791  Cd Length: 248  Bit Score: 306.98  E-value: 7.44e-105
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  13 ERLTANILKAGPMPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDG 92
Cdd:COG0020   3 ERALLPEIDPGNLPRHVAIIMDGNGRWAKKRGLPRIEGHRAGVEAVREVVEACAELGIKYLTLYAFSTENWKRPKEEVSF 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  93 LMELARQKFSRlltEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWG 172
Cdd:COG0020  83 LMGLLREYLRR---ELDELHKNNVRVRVIGDRSRLPESLQEAIEEAEELTKNNTGLTLNIALNYGGRWEIVDAVRKIARD 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975 173 VEQGLIKSSDVSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:COG0020 160 VAAGELDPEDIDEETISRYLYTADLPDPDLLIRTSGEQRISNFLLWQLAYAELYFTDVLWPDFDKEDLLRAIRDYQRRER 239


                ....*..
gi 47085975 253 SIQKARE 259
Cdd:COG0020 240 RFGGTSE 246
uppS TIGR00055
undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule ...
 27-255 1.03e-88

undecaprenyl diphosphate synthase; This enzyme builds undecaprenyl diphosphate, a molecule that in bacteria is used a carrier in synthesizing cell wall components. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 129165  Cd Length: 226  Bit Score: 265.42  E-value: 1.03e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975    27 KHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQKFSRllt 106
Cdd:TIGR00055   1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDR--- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   107 EQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIKSSDVSEV 186
Cdd:TIGR00055  78 EVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEE 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47085975   187 LLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHRSIQ 255
Cdd:TIGR00055 158 TLNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226
PRK14831 PRK14831
undecaprenyl pyrophosphate synthase; Provisional
 20-252 4.07e-75

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184841  Cd Length: 249  Bit Score: 231.37  E-value: 4.07e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   20 LKAGPMPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELarq 99
Cdd:PRK14831  15 LDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTL--- 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  100 kFSRLL-TEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLI 178
Cdd:PRK14831  92 -FERVLrRELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQGEL 170

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 47085975  179 KSSDVSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:PRK14831 171 DPSEIDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRER 244
PRK14830 PRK14830
undecaprenyl pyrophosphate synthase; Provisional
 20-252 1.59e-74

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 184840  Cd Length: 251  Bit Score: 230.15  E-value: 1.59e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   20 LKAGPMPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQ 99
Cdd:PRK14830  17 LDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVE 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  100 KFSRLLTEqenLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIK 179
Cdd:PRK14830  97 FLDKFVPE---LIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLN 173

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 47085975  180 SSDVSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:PRK14830 174 PEDITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQSRQR 246
PRK14832 PRK14832
undecaprenyl pyrophosphate synthase; Provisional
 25-252 5.33e-64

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237827  Cd Length: 253  Bit Score: 203.31  E-value: 5.33e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   25 MPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELarqkFSRL 104
Cdd:PRK14832  18 IPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLL----FERL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  105 L-TEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIKSSDV 183
Cdd:PRK14832  94 LrRELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLSADAV 173

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47085975  184 SEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:PRK14832 174 NEQLVEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLSYQKRDR 242
PRK14836 PRK14836
undecaprenyl pyrophosphate synthase; Provisional
 19-236 6.09e-64

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237831  Cd Length: 253  Bit Score: 202.99  E-value: 6.09e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   19 ILKAGPMPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELAR 98
Cdd:PRK14836   8 IPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   99 QKFSRlltEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLI 178
Cdd:PRK14836  88 KALDR---EVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKL 164

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 47085975  179 KSSDVSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYS 236
Cdd:PRK14836 165 APDEIDEALLAQHLALADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFD 222
PRK14834 PRK14834
isoprenyl transferase;
26-252 7.29e-62

isoprenyl transferase;


Pssm-ID: 237829  Cd Length: 249  Bit Score: 197.67  E-value: 7.29e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   26 PKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARqKFSRll 105
Cdd:PRK14834  15 PRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLR-LFIR-- 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  106 TEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIKSSDVSE 185
Cdd:PRK14834  92 RDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPASIDA 171

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 47085975  186 VLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:PRK14834 172 ETISANLDTADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEYARRER 238
PRK14835 PRK14835
isoprenyl transferase;
13-252 1.34e-55

isoprenyl transferase;


Pssm-ID: 237830  Cd Length: 275  Bit Score: 182.35  E-value: 1.34e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   13 ERLTANIlKAGPMPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDG 92
Cdd:PRK14835  30 QRLEREV-KHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVET 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   93 LMELARQKfSRLLTEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWG 172
Cdd:PRK14835 109 LMNLFERE-ARRMAVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLE 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  173 VEQGLIKSSDVSEVL----LSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQ 248
Cdd:PRK14835 188 AAATGKSPEEVAAELtpehISAHLYTAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRDYQ 267


                 ....
gi 47085975  249 MSHR 252
Cdd:PRK14835 268 GRER 271
PRK14840 PRK14840
undecaprenyl pyrophosphate synthase; Provisional
 12-253 1.81e-55

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173301  Cd Length: 250  Bit Score: 181.20  E-value: 1.81e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   12 LERLTANILKAGPMPKHVAFIMDGNRRYAQKEHKERQ----EGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSK 87
Cdd:PRK14840   5 LEQAQENFPSLQSLPRHVAIIMDGNRRWYRKHEQFCQkraiSGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSK 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   88 EEVDGLMELarqkFSRLLTEQ-ENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAV 166
Cdd:PRK14840  85 EEVAELFSL----FNSQLDSQlPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  167 KEMAWGVEQGLIKSSDVSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQ 246
Cdd:PRK14840 161 KKLHQDLANKKISSDDISEELISSYLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPNDLLEAIKT 240


                 ....*..
gi 47085975  247 FQmsHRS 253
Cdd:PRK14840 241 YQ--QRS 245
PRK14838 PRK14838
isoprenyl transferase;
25-259 1.06e-52

isoprenyl transferase;


Pssm-ID: 184846  Cd Length: 242  Bit Score: 173.91  E-value: 1.06e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   25 MPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELarqkfsrL 104
Cdd:PRK14838  10 IPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSL-------L 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  105 LT--EQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIKSSD 182
Cdd:PRK14838  83 LDsiEEETFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGELNPEE 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 47085975  183 VSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHRSIQKARE 259
Cdd:PRK14838 163 ITEESISEHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDYQKRERRFGKTSE 239
PRK14833 PRK14833
di-trans,poly-cis-decaprenylcistransferase;
25-252 1.34e-52

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237828  Cd Length: 233  Bit Score: 173.08  E-value: 1.34e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   25 MPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQkfsRL 104
Cdd:PRK14833   4 TLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKK---YL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  105 LTEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMawgVEQ--GLIKSSD 182
Cdd:PRK14833  81 KDERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKL---LESppSHIGELE 157

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  183 VSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:PRK14833 158 SLEEEISNCLDTADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVR 227
PRK14828 PRK14828
undecaprenyl pyrophosphate synthase; Provisional
 11-253 1.05e-49

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237825  Cd Length: 256  Bit Score: 166.46  E-value: 1.05e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   11 LLERLTANILKAGPMPKHVAFIMDGNRRYAQKE-HKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEE 89
Cdd:PRK14828  12 VYARRLLGELDGAQVPGHVGIIVDGNRRWARKAgFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEE 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   90 VDGLM----ELARQkfsrlLTEQENLEKHGVcirvlGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANA 165
Cdd:PRK14828  92 LNPLLdiieDVVRQ-----LAPDGRWRVRHV-----GSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDA 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  166 VKEMawgVEQGLIKSSDVSEV-------LLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFW 238
Cdd:PRK14828 162 VRSL---LTEHKDKGTSIDELaesvtvdAISTHLYTGGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYYFCETYWPAFRKV 238

                        250
                 ....*....|....*
gi 47085975  239 NLCEAILQFQMSHRS 253
Cdd:PRK14828 239 DFLRALRDYSQRERR 253
PRK14841 PRK14841
undecaprenyl pyrophosphate synthase; Provisional
 25-252 2.88e-49

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173302  Cd Length: 233  Bit Score: 164.78  E-value: 2.88e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   25 MPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQKFSRl 104
Cdd:PRK14841   3 IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDR- 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  105 ltEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGliKSSDVS 184
Cdd:PRK14841  82 --EMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQG--KKIELT 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 47085975  185 EVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:PRK14841 158 EETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKRER 225
PRK14829 PRK14829
undecaprenyl pyrophosphate synthase; Provisional
 22-253 2.12e-48

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 237826  Cd Length: 243  Bit Score: 162.65  E-value: 2.12e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   22 AGPMPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQKF 101
Cdd:PRK14829  11 KNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  102 SRlltEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIKSS 181
Cdd:PRK14829  91 HR---RREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKISGD 167

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47085975  182 DVSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFqmSHRS 253
Cdd:PRK14829 168 RVTEKMISDHLYNPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWAAIDEY--AHRD 237
PRK14827 PRK14827
undecaprenyl pyrophosphate synthase; Provisional
 20-242 4.62e-47

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173288  Cd Length: 296  Bit Score: 160.89  E-value: 4.62e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   20 LKAGPMPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARQ 99
Cdd:PRK14827  62 IPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRD 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  100 KFSRlltEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIK 179
Cdd:PRK14827 142 VVRR---RRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREAAAGRLN 218

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 47085975  180 SSDVSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEY---SFWNLCE 242
Cdd:PRK14827 219 PERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYdrrDLWAACE 284
PRK14839 PRK14839
di-trans,poly-cis-decaprenylcistransferase;
28-252 3.98e-43

di-trans,poly-cis-decaprenylcistransferase;


Pssm-ID: 237832  Cd Length: 239  Bit Score: 148.75  E-value: 3.98e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   28 HVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARqkfSRLLTE 107
Cdd:PRK14839  12 HVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLR---AYLRNE 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  108 QENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEmAWGVEqGLIKSSdvsevl 187
Cdd:PRK14839  89 TERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAK-ALGPE-GLSREA------ 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 47085975  188 LSECLySSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:PRK14839 161 FSDLL-TGDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHGRER 224
PRK10240 PRK10240
(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;
33-235 6.10e-43

(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase;


Pssm-ID: 182326  Cd Length: 229  Bit Score: 148.21  E-value: 6.10e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   33 MDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELarqkFSRLL-TEQENL 111
Cdd:PRK10240   1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMEL----FVWALdSEVKSL 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  112 EKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMAWGVEQGLIKSSDVSEVLLSEC 191
Cdd:PRK10240  77 HRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQH 156

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 47085975  192 LYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEY 235
Cdd:PRK10240 157 ICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDF 200
PRK14837 PRK14837
undecaprenyl pyrophosphate synthase; Provisional
 20-236 5.64e-42

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173298  Cd Length: 230  Bit Score: 145.74  E-value: 5.64e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   20 LKAGPMPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVDGLMELARq 99
Cdd:PRK14837   1 MNKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIA- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  100 kfSRLLTEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKEMawgVEQGLIK 179
Cdd:PRK14837  80 --DYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKF---LSSGLDL 154

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 47085975  180 SSdVSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYS 236
Cdd:PRK14837 155 ET-LNENVFSKFLDNPELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYY 210
PRK14842 PRK14842
undecaprenyl pyrophosphate synthase; Provisional
 25-252 5.03e-40

undecaprenyl pyrophosphate synthase; Provisional


Pssm-ID: 173303  Cd Length: 241  Bit Score: 140.89  E-value: 5.03e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   25 MPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKEEVdglmelaRQKFSRL 104
Cdd:PRK14842   8 IPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEI-------RSIFGLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  105 L----TEQENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIANAVKE-MAWGVEQGLIK 179
Cdd:PRK14842  81 VefieTRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEvFLARKAKKVTL 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 47085975  180 SSDVSEVLLSECLYSSNSPNPDLLIRTSGEVRLSDFLLWQTSYSCLVFQSVLWPEYSFWNLCEAILQFQMSHR 252
Cdd:PRK14842 161 EKPLKEKEFEKFLYTSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKWYETRTR 233
PTZ00349 PTZ00349
dehydrodolichyl diphosphate synthetase; Provisional
 9-249 1.55e-27

dehydrodolichyl diphosphate synthetase; Provisional


Pssm-ID: 185571  Cd Length: 322  Bit Score: 109.70  E-value: 1.55e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975    9 LSLLERLTANILKAGPMPKHVAFIMDGNRRYAQKEHKERQEGHTQGFEKLAETLRWCLNLGIHEVTVYAFSIENFKRSKE 88
Cdd:PTZ00349   3 LNIIERFITSLLRDFINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975   89 EVDGLMELarqKFSRLLTEQ---ENLEKHGVCIRVLGDLTLLPEDLQTLIAKAVVSTRAHNKCFLNVCFAYTSRHEIA-- 163
Cdd:PTZ00349  83 EIHFLFYL---NLLILINEDfffKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSlc 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47085975  164 ------------NAVKE---------MAWGVEQGLIKSSDVSEvllsECLY----------------------------- 193
Cdd:PTZ00349 160 kfnpnlyfdtykNLLEEkkilcgsniLTDPIKEGTFAIPDDED----ECDYldheleneridldlkfdgdcicgeksfln 235

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 47085975  194 --------------SSNSPNPDLLIRTSGEVRLSDFLLWQTS-YSCLVFQSVLWPEYSFWNLCEAILQFQM 249
Cdd:PTZ00349 236 eeqieivnyhkkllTSDLPPPNILIRTSGEKRLSDFMLYQISeFTEIYFINEYWPIFNFLQFIYIILHYTI 306
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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