NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|46249421|ref|NP_996841|]
View 

latent-transforming growth factor beta-binding protein 1 isoform LTBP-1S precursor [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
363-403 1.41e-12

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


:

Pssm-ID: 459903  Cd Length: 44  Bit Score: 63.07  E-value: 1.41e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 46249421    363 CMHPLSVHLTKQICCC-SVGKAWGPHCEKCPLPGTAAFKEIC 403
Cdd:pfam00683    3 CSNPLPGNVTKSECCCtSVGRAWGSPCELCPPPGTDEFRELC 44
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
1032-1074 1.38e-10

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


:

Pssm-ID: 459903  Cd Length: 44  Bit Score: 57.67  E-value: 1.38e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 46249421   1032 CDNVLAPNVTKQECCCTS-GAGWGDNCEifPCPVQGTAEFTEMC 1074
Cdd:pfam00683    3 CSNPLPGNVTKSECCCTSvGRAWGSPCE--LCPPPGTDEFRELC 44
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
1208-1250 4.35e-09

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


:

Pssm-ID: 459903  Cd Length: 44  Bit Score: 53.44  E-value: 4.35e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 46249421   1208 VCSRPLVGkQTTYTECCCLY-GEAWGMQCALCPMKDSDDYAQLC 1250
Cdd:pfam00683    2 RCSNPLPG-NVTKSECCCTSvGRAWGSPCELCPPPGTDEFRELC 44
EGF_CA smart00179
Calcium-binding EGF-like domain;
876-917 4.96e-08

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 50.32  E-value: 4.96e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     876 DINECAQPGLCGSHGECLNTQGSFHCVCEQGFSisaDGRTCE 917
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
794-834 7.20e-07

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 46.86  E-value: 7.20e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     794 DIDECEHHHLCSHG-QCRNTEGSFQCVCNQGYRAsvlGDHCE 834
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCECPPGYTD---GRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
753-784 2.99e-06

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 45.32  E-value: 2.99e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 46249421     753 DIDECQQGNLCMNG-QCRNTDGSFRCTCGQGYQ 784
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCECPPGYT 33
EGF_CA smart00179
Calcium-binding EGF-like domain;
918-959 1.12e-05

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 43.39  E-value: 1.12e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     918 DIDECVNNTVCDSHGFCDNTAGSFRCLCYQGFqapQDGQGCV 959
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGY---TDGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
300-330 2.23e-05

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 42.62  E-value: 2.23e-05
                            10        20        30
                    ....*....|....*....|....*....|..
gi 46249421     300 DINECQLQGVCPNG-ECLNTMGSYRCSCKMGF 330
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCECPPGY 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
589-630 2.51e-05

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 42.62  E-value: 2.51e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 46249421     589 DIDECAQvRHLCSQG-RCENTEGSFLCVCPAGFmasEEGTNCI 630
Cdd:smart00179    1 DIDECAS-GNPCQNGgTCVNTVGSYRCECPPGY---TDGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
712-752 4.31e-05

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.85  E-value: 4.31e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     712 DVDECLQPKVCTNGS-CTNLEGSYMCSCHRGYSptpDHRHCQ 752
Cdd:smart00179    1 DIDECASGNPCQNGGtCVNTVGSYRCECPPGYT---DGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
835-871 4.76e-05

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.85  E-value: 4.76e-05
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 46249421     835 DINECLEDSSVCQGGDCINTAGSYDCTCPDGFQLNDN 871
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRN 37
PHA03247 super family cl33720
large tegument protein UL36; Provisional
385-542 6.66e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 6.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46249421   385 GPHCEKCPLPGTAAfkeicPGGmgytvsGVHRRRPIHQHIGKEAVYVKPKNTQ----PVAKSTH----PPPLPAKEEPVE 456
Cdd:PHA03247 2844 GPPPPSLPLGGSVA-----PGG------DVRRRPPSRSPAAKPAAPARPPVRRlarpAVSRSTEsfalPPDQPERPPQPQ 2912
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46249421   457 ALTSSWEHGPRGAEPEVVTAPPEKEIPSLDQEKTRLEPGQPQLSPGVSTI---HLHP-QFPVVVEKTSPPVPVEVAPEAS 532
Cdd:PHA03247 2913 APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPwlgALVPgRVAVPRFRVPQPAPSREAPASS 2992
                         170
                  ....*....|
gi 46249421   533 TSSASQVIAP 542
Cdd:PHA03247 2993 TPPLTGHSLS 3002
EGF_CA smart00179
Calcium-binding EGF-like domain;
1335-1369 2.38e-04

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 39.92  E-value: 2.38e-04
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 46249421    1335 DVNECSELNNrmslCKN-AKCINTEGSYKCLCLPGY 1369
Cdd:smart00179    1 DIDECASGNP----CQNgGTCVNTVGSYRCECPPGY 32
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
241-276 2.52e-03

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


:

Pssm-ID: 459903  Cd Length: 44  Bit Score: 36.87  E-value: 2.52e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 46249421    241 QCGKALPG-LSKQEDCCGTVGTSWGfNKCQKCPKKQS 276
Cdd:pfam00683    2 RCSNPLPGnVTKSECCCTSVGRAWG-SPCELCPPPGT 37
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
672-705 3.88e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


:

Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.46  E-value: 3.88e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 46249421  672 DIDECLKPSTCPEE-QCVNTPGSYQCVpCTEGFRG 705
Cdd:cd00054    1 DIDECASGNPCQNGgTCVNTVGSYRCS-CPPGYTG 34
EGF_CA smart00179
Calcium-binding EGF-like domain;
631-667 5.14e-03

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 36.07  E-value: 5.14e-03
                            10        20        30
                    ....*....|....*....|....*....|....*...
gi 46249421     631 DVDECLRPDMCRDG-RCINTAGAFRCEyCDSGYRMSRR 667
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCE-CPPGYTDGRN 37
 
Name Accession Description Interval E-value
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
363-403 1.41e-12

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


Pssm-ID: 459903  Cd Length: 44  Bit Score: 63.07  E-value: 1.41e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 46249421    363 CMHPLSVHLTKQICCC-SVGKAWGPHCEKCPLPGTAAFKEIC 403
Cdd:pfam00683    3 CSNPLPGNVTKSECCCtSVGRAWGSPCELCPPPGTDEFRELC 44
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
1032-1074 1.38e-10

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


Pssm-ID: 459903  Cd Length: 44  Bit Score: 57.67  E-value: 1.38e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 46249421   1032 CDNVLAPNVTKQECCCTS-GAGWGDNCEifPCPVQGTAEFTEMC 1074
Cdd:pfam00683    3 CSNPLPGNVTKSECCCTSvGRAWGSPCE--LCPPPGTDEFRELC 44
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
1208-1250 4.35e-09

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


Pssm-ID: 459903  Cd Length: 44  Bit Score: 53.44  E-value: 4.35e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 46249421   1208 VCSRPLVGkQTTYTECCCLY-GEAWGMQCALCPMKDSDDYAQLC 1250
Cdd:pfam00683    2 RCSNPLPG-NVTKSECCCTSvGRAWGSPCELCPPPGTDEFRELC 44
EGF_CA smart00179
Calcium-binding EGF-like domain;
876-917 4.96e-08

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 50.32  E-value: 4.96e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     876 DINECAQPGLCGSHGECLNTQGSFHCVCEQGFSisaDGRTCE 917
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNCE 39
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
876-917 2.82e-07

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 48.02  E-value: 2.82e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 46249421  876 DINECAQPGLCGSHGECLNTQGSFHCVCEQGFSisadGRTCE 917
Cdd:cd00054    1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYT----GRNCE 38
EGF_CA smart00179
Calcium-binding EGF-like domain;
794-834 7.20e-07

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 46.86  E-value: 7.20e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     794 DIDECEHHHLCSHG-QCRNTEGSFQCVCNQGYRAsvlGDHCE 834
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCECPPGYTD---GRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
753-784 2.99e-06

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 45.32  E-value: 2.99e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 46249421     753 DIDECQQGNLCMNG-QCRNTDGSFRCTCGQGYQ 784
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCECPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
794-834 3.21e-06

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 44.94  E-value: 3.21e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 46249421  794 DIDECEHHHLCS-HGQCRNTEGSFQCVCNQGYRasvlGDHCE 834
Cdd:cd00054    1 DIDECASGNPCQnGGTCVNTVGSYRCSCPPGYT----GRNCE 38
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
753-785 5.35e-06

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 44.55  E-value: 5.35e-06
                         10        20        30
                 ....*....|....*....|....*....|....
gi 46249421  753 DIDECQQGNLCMN-GQCRNTDGSFRCTCGQGYQL 785
Cdd:cd00054    1 DIDECASGNPCQNgGTCVNTVGSYRCSCPPGYTG 34
EGF_CA smart00179
Calcium-binding EGF-like domain;
918-959 1.12e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 43.39  E-value: 1.12e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     918 DIDECVNNTVCDSHGFCDNTAGSFRCLCYQGFqapQDGQGCV 959
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGY---TDGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
300-330 2.23e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 42.62  E-value: 2.23e-05
                            10        20        30
                    ....*....|....*....|....*....|..
gi 46249421     300 DINECQLQGVCPNG-ECLNTMGSYRCSCKMGF 330
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCECPPGY 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
589-630 2.51e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 42.62  E-value: 2.51e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 46249421     589 DIDECAQvRHLCSQG-RCENTEGSFLCVCPAGFmasEEGTNCI 630
Cdd:smart00179    1 DIDECAS-GNPCQNGgTCVNTVGSYRCECPPGY---TDGRNCE 39
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
918-950 3.63e-05

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 42.24  E-value: 3.63e-05
                         10        20        30
                 ....*....|....*....|....*....|...
gi 46249421  918 DIDECVNNTVCDSHGFCDNTAGSFRCLCYQGFQ 950
Cdd:cd00054    1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYT 33
EGF_CA smart00179
Calcium-binding EGF-like domain;
712-752 4.31e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.85  E-value: 4.31e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     712 DVDECLQPKVCTNGS-CTNLEGSYMCSCHRGYSptpDHRHCQ 752
Cdd:smart00179    1 DIDECASGNPCQNGGtCVNTVGSYRCECPPGYT---DGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
835-871 4.76e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.85  E-value: 4.76e-05
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 46249421     835 DINECLEDSSVCQGGDCINTAGSYDCTCPDGFQLNDN 871
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRN 37
PHA03247 PHA03247
large tegument protein UL36; Provisional
385-542 6.66e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 6.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46249421   385 GPHCEKCPLPGTAAfkeicPGGmgytvsGVHRRRPIHQHIGKEAVYVKPKNTQ----PVAKSTH----PPPLPAKEEPVE 456
Cdd:PHA03247 2844 GPPPPSLPLGGSVA-----PGG------DVRRRPPSRSPAAKPAAPARPPVRRlarpAVSRSTEsfalPPDQPERPPQPQ 2912
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46249421   457 ALTSSWEHGPRGAEPEVVTAPPEKEIPSLDQEKTRLEPGQPQLSPGVSTI---HLHP-QFPVVVEKTSPPVPVEVAPEAS 532
Cdd:PHA03247 2913 APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPwlgALVPgRVAVPRFRVPQPAPSREAPASS 2992
                         170
                  ....*....|
gi 46249421   533 TSSASQVIAP 542
Cdd:PHA03247 2993 TPPLTGHSLS 3002
EGF_CA pfam07645
Calcium-binding EGF domain;
589-619 7.93e-05

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 41.07  E-value: 7.93e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 46249421    589 DIDECAQVRHLCSQ-GRCENTEGSFLCVCPAG 619
Cdd:pfam07645    1 DVDECATGTHNCPAnTVCVNTIGSFECRCPDG 32
EGF_CA pfam07645
Calcium-binding EGF domain;
835-865 8.41e-05

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 41.07  E-value: 8.41e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 46249421    835 DINECLEDSSVC-QGGDCINTAGSYDCTCPDG 865
Cdd:pfam07645    1 DVDECATGTHNCpANTVCVNTIGSFECRCPDG 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
300-330 1.26e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 40.70  E-value: 1.26e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 46249421  300 DINECQLQGVCPN-GECLNTMGSYRCSCKMGF 330
Cdd:cd00054    1 DIDECASGNPCQNgGTCVNTVGSYRCSCPPGY 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
1335-1369 2.38e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 39.92  E-value: 2.38e-04
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 46249421    1335 DVNECSELNNrmslCKN-AKCINTEGSYKCLCLPGY 1369
Cdd:smart00179    1 DIDECASGNP----CQNgGTCVNTVGSYRCECPPGY 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
835-868 2.77e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 39.54  E-value: 2.77e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 46249421  835 DINECLEDSSVCQGGDCINTAGSYDCTCPDGFQL 868
Cdd:cd00054    1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
589-630 3.76e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 39.16  E-value: 3.76e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 46249421  589 DIDECAQvRHLCS-QGRCENTEGSFLCVCPAGFmaseEGTNCI 630
Cdd:cd00054    1 DIDECAS-GNPCQnGGTCVNTVGSYRCSCPPGY----TGRNCE 38
EGF_CA pfam07645
Calcium-binding EGF domain;
876-906 4.17e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 38.76  E-value: 4.17e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 46249421    876 DINECAQPG-LCGSHGECLNTQGSFHCVCEQG 906
Cdd:pfam07645    1 DVDECATGThNCPANTVCVNTIGSFECRCPDG 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
1335-1370 7.56e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.39  E-value: 7.56e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 46249421 1335 DVNECSELNNrmslCKN-AKCINTEGSYKCLCLPGYI 1370
Cdd:cd00054    1 DIDECASGNP----CQNgGTCVNTVGSYRCSCPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
712-752 8.26e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.39  E-value: 8.26e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 46249421  712 DVDECLQPKVCTN-GSCTNLEGSYMCSCHRGYSPtpdhRHCQ 752
Cdd:cd00054    1 DIDECASGNPCQNgGTCVNTVGSYRCSCPPGYTG----RNCE 38
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
241-276 2.52e-03

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


Pssm-ID: 459903  Cd Length: 44  Bit Score: 36.87  E-value: 2.52e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 46249421    241 QCGKALPG-LSKQEDCCGTVGTSWGfNKCQKCPKKQS 276
Cdd:pfam00683    2 RCSNPLPGnVTKSECCCTSVGRAWG-SPCELCPPPGT 37
EGF_CA pfam07645
Calcium-binding EGF domain;
918-948 3.56e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 36.45  E-value: 3.56e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 46249421    918 DIDECVNNT-VCDSHGFCDNTAGSFRCLCYQG 948
Cdd:pfam07645    1 DVDECATGThNCPANTVCVNTIGSFECRCPDG 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
672-705 3.88e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.46  E-value: 3.88e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 46249421  672 DIDECLKPSTCPEE-QCVNTPGSYQCVpCTEGFRG 705
Cdd:cd00054    1 DIDECASGNPCQNGgTCVNTVGSYRCS-CPPGYTG 34
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
736-756 4.52e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 35.85  E-value: 4.52e-03
                           10        20
                   ....*....|....*....|.
gi 46249421    736 CSCHRGYSPTPDHRHCQDIDE 756
Cdd:pfam12662    2 CSCPPGYQLDPDGRTCVDIDE 22
EGF_CA pfam07645
Calcium-binding EGF domain;
300-329 4.87e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 36.06  E-value: 4.87e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 46249421    300 DINEC-QLQGVCP-NGECLNTMGSYRCSCKMG 329
Cdd:pfam07645    1 DVDECaTGTHNCPaNTVCVNTIGSFECRCPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
631-667 5.14e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 36.07  E-value: 5.14e-03
                            10        20        30
                    ....*....|....*....|....*....|....*...
gi 46249421     631 DVDECLRPDMCRDG-RCINTAGAFRCEyCDSGYRMSRR 667
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCE-CPPGYTDGRN 37
EGF_CA smart00179
Calcium-binding EGF-like domain;
672-704 7.33e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 35.69  E-value: 7.33e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 46249421     672 DIDECLKPSTC-PEEQCVNTPGSYQCVpCTEGFR 704
Cdd:smart00179    1 DIDECASGNPCqNGGTCVNTVGSYRCE-CPPGYT 33
 
Name Accession Description Interval E-value
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
363-403 1.41e-12

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


Pssm-ID: 459903  Cd Length: 44  Bit Score: 63.07  E-value: 1.41e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 46249421    363 CMHPLSVHLTKQICCC-SVGKAWGPHCEKCPLPGTAAFKEIC 403
Cdd:pfam00683    3 CSNPLPGNVTKSECCCtSVGRAWGSPCELCPPPGTDEFRELC 44
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
1032-1074 1.38e-10

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


Pssm-ID: 459903  Cd Length: 44  Bit Score: 57.67  E-value: 1.38e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 46249421   1032 CDNVLAPNVTKQECCCTS-GAGWGDNCEifPCPVQGTAEFTEMC 1074
Cdd:pfam00683    3 CSNPLPGNVTKSECCCTSvGRAWGSPCE--LCPPPGTDEFRELC 44
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
1208-1250 4.35e-09

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


Pssm-ID: 459903  Cd Length: 44  Bit Score: 53.44  E-value: 4.35e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 46249421   1208 VCSRPLVGkQTTYTECCCLY-GEAWGMQCALCPMKDSDDYAQLC 1250
Cdd:pfam00683    2 RCSNPLPG-NVTKSECCCTSvGRAWGSPCELCPPPGTDEFRELC 44
EGF_CA smart00179
Calcium-binding EGF-like domain;
876-917 4.96e-08

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 50.32  E-value: 4.96e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     876 DINECAQPGLCGSHGECLNTQGSFHCVCEQGFSisaDGRTCE 917
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNCE 39
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
876-917 2.82e-07

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 48.02  E-value: 2.82e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 46249421  876 DINECAQPGLCGSHGECLNTQGSFHCVCEQGFSisadGRTCE 917
Cdd:cd00054    1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYT----GRNCE 38
EGF_CA smart00179
Calcium-binding EGF-like domain;
794-834 7.20e-07

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 46.86  E-value: 7.20e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     794 DIDECEHHHLCSHG-QCRNTEGSFQCVCNQGYRAsvlGDHCE 834
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCECPPGYTD---GRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
753-784 2.99e-06

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 45.32  E-value: 2.99e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 46249421     753 DIDECQQGNLCMNG-QCRNTDGSFRCTCGQGYQ 784
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCECPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
794-834 3.21e-06

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 44.94  E-value: 3.21e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 46249421  794 DIDECEHHHLCS-HGQCRNTEGSFQCVCNQGYRasvlGDHCE 834
Cdd:cd00054    1 DIDECASGNPCQnGGTCVNTVGSYRCSCPPGYT----GRNCE 38
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
753-785 5.35e-06

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 44.55  E-value: 5.35e-06
                         10        20        30
                 ....*....|....*....|....*....|....
gi 46249421  753 DIDECQQGNLCMN-GQCRNTDGSFRCTCGQGYQL 785
Cdd:cd00054    1 DIDECASGNPCQNgGTCVNTVGSYRCSCPPGYTG 34
EGF_CA smart00179
Calcium-binding EGF-like domain;
918-959 1.12e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 43.39  E-value: 1.12e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     918 DIDECVNNTVCDSHGFCDNTAGSFRCLCYQGFqapQDGQGCV 959
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGY---TDGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
300-330 2.23e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 42.62  E-value: 2.23e-05
                            10        20        30
                    ....*....|....*....|....*....|..
gi 46249421     300 DINECQLQGVCPNG-ECLNTMGSYRCSCKMGF 330
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCECPPGY 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
589-630 2.51e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 42.62  E-value: 2.51e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 46249421     589 DIDECAQvRHLCSQG-RCENTEGSFLCVCPAGFmasEEGTNCI 630
Cdd:smart00179    1 DIDECAS-GNPCQNGgTCVNTVGSYRCECPPGY---TDGRNCE 39
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
918-950 3.63e-05

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 42.24  E-value: 3.63e-05
                         10        20        30
                 ....*....|....*....|....*....|...
gi 46249421  918 DIDECVNNTVCDSHGFCDNTAGSFRCLCYQGFQ 950
Cdd:cd00054    1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYT 33
EGF_CA smart00179
Calcium-binding EGF-like domain;
712-752 4.31e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.85  E-value: 4.31e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 46249421     712 DVDECLQPKVCTNGS-CTNLEGSYMCSCHRGYSptpDHRHCQ 752
Cdd:smart00179    1 DIDECASGNPCQNGGtCVNTVGSYRCECPPGYT---DGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
835-871 4.76e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.85  E-value: 4.76e-05
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 46249421     835 DINECLEDSSVCQGGDCINTAGSYDCTCPDGFQLNDN 871
Cdd:smart00179    1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRN 37
PHA03247 PHA03247
large tegument protein UL36; Provisional
385-542 6.66e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 6.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46249421   385 GPHCEKCPLPGTAAfkeicPGGmgytvsGVHRRRPIHQHIGKEAVYVKPKNTQ----PVAKSTH----PPPLPAKEEPVE 456
Cdd:PHA03247 2844 GPPPPSLPLGGSVA-----PGG------DVRRRPPSRSPAAKPAAPARPPVRRlarpAVSRSTEsfalPPDQPERPPQPQ 2912
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46249421   457 ALTSSWEHGPRGAEPEVVTAPPEKEIPSLDQEKTRLEPGQPQLSPGVSTI---HLHP-QFPVVVEKTSPPVPVEVAPEAS 532
Cdd:PHA03247 2913 APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPwlgALVPgRVAVPRFRVPQPAPSREAPASS 2992
                         170
                  ....*....|
gi 46249421   533 TSSASQVIAP 542
Cdd:PHA03247 2993 TPPLTGHSLS 3002
EGF_CA pfam07645
Calcium-binding EGF domain;
589-619 7.93e-05

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 41.07  E-value: 7.93e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 46249421    589 DIDECAQVRHLCSQ-GRCENTEGSFLCVCPAG 619
Cdd:pfam07645    1 DVDECATGTHNCPAnTVCVNTIGSFECRCPDG 32
EGF_CA pfam07645
Calcium-binding EGF domain;
835-865 8.41e-05

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 41.07  E-value: 8.41e-05
                           10        20        30
                   ....*....|....*....|....*....|..
gi 46249421    835 DINECLEDSSVC-QGGDCINTAGSYDCTCPDG 865
Cdd:pfam07645    1 DVDECATGTHNCpANTVCVNTIGSFECRCPDG 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
300-330 1.26e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 40.70  E-value: 1.26e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 46249421  300 DINECQLQGVCPN-GECLNTMGSYRCSCKMGF 330
Cdd:cd00054    1 DIDECASGNPCQNgGTCVNTVGSYRCSCPPGY 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
1335-1369 2.38e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 39.92  E-value: 2.38e-04
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 46249421    1335 DVNECSELNNrmslCKN-AKCINTEGSYKCLCLPGY 1369
Cdd:smart00179    1 DIDECASGNP----CQNgGTCVNTVGSYRCECPPGY 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
835-868 2.77e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 39.54  E-value: 2.77e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 46249421  835 DINECLEDSSVCQGGDCINTAGSYDCTCPDGFQL 868
Cdd:cd00054    1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
589-630 3.76e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 39.16  E-value: 3.76e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 46249421  589 DIDECAQvRHLCS-QGRCENTEGSFLCVCPAGFmaseEGTNCI 630
Cdd:cd00054    1 DIDECAS-GNPCQnGGTCVNTVGSYRCSCPPGY----TGRNCE 38
EGF_CA pfam07645
Calcium-binding EGF domain;
876-906 4.17e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 38.76  E-value: 4.17e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 46249421    876 DINECAQPG-LCGSHGECLNTQGSFHCVCEQG 906
Cdd:pfam07645    1 DVDECATGThNCPANTVCVNTIGSFECRCPDG 32
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
579-626 4.63e-04

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 43.14  E-value: 4.63e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 46249421  579 KFSEQLRK--CVDIDECAQVRHLCSQGrCENTEGSFLCVCPAGFMASEEG 626
Cdd:cd01475  174 ELTKKFQGkiCVVPDLCATLSHVCQQV-CISTPGSYLCACTEGYALLEDN 222
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
1335-1370 7.56e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.39  E-value: 7.56e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 46249421 1335 DVNECSELNNrmslCKN-AKCINTEGSYKCLCLPGYI 1370
Cdd:cd00054    1 DIDECASGNP----CQNgGTCVNTVGSYRCSCPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
712-752 8.26e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.39  E-value: 8.26e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 46249421  712 DVDECLQPKVCTN-GSCTNLEGSYMCSCHRGYSPtpdhRHCQ 752
Cdd:cd00054    1 DIDECASGNPCQNgGTCVNTVGSYRCSCPPGYTG----RNCE 38
EGF smart00181
Epidermal growth factor-like domain;
756-786 1.25e-03

Epidermal growth factor-like domain;


Pssm-ID: 214544  Cd Length: 35  Bit Score: 37.88  E-value: 1.25e-03
                            10        20        30
                    ....*....|....*....|....*....|.
gi 46249421     756 ECQQGNLCMNGQCRNTDGSFRCTCGQGYQLS 786
Cdd:smart00181    1 ECASGGPCSNGTCINTPGSYTCSCPPGYTGD 31
EGF smart00181
Epidermal growth factor-like domain;
797-825 1.26e-03

Epidermal growth factor-like domain;


Pssm-ID: 214544  Cd Length: 35  Bit Score: 37.50  E-value: 1.26e-03
                            10        20
                    ....*....|....*....|....*....
gi 46249421     797 ECEHHHLCSHGQCRNTEGSFQCVCNQGYR 825
Cdd:smart00181    1 ECASGGPCSNGTCINTPGSYTCSCPPGYT 29
EGF smart00181
Epidermal growth factor-like domain;
303-335 1.88e-03

Epidermal growth factor-like domain;


Pssm-ID: 214544  Cd Length: 35  Bit Score: 37.11  E-value: 1.88e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 46249421     303 ECQLQGVCPNGECLNTMGSYRCSCKMGFGPDPT 335
Cdd:smart00181    1 ECASGGPCSNGTCINTPGSYTCSCPPGYTGDKR 33
TB pfam00683
TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid ...
241-276 2.52e-03

TB domain; This domain is also known as the 8 cysteine domain. This family includes the hybrid domains. This cysteine rich repeat is found in TGF binding protein and fibrillin.


Pssm-ID: 459903  Cd Length: 44  Bit Score: 36.87  E-value: 2.52e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 46249421    241 QCGKALPG-LSKQEDCCGTVGTSWGfNKCQKCPKKQS 276
Cdd:pfam00683    2 RCSNPLPGnVTKSECCCTSVGRAWG-SPCELCPPPGT 37
EGF_CA pfam07645
Calcium-binding EGF domain;
918-948 3.56e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 36.45  E-value: 3.56e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 46249421    918 DIDECVNNT-VCDSHGFCDNTAGSFRCLCYQG 948
Cdd:pfam07645    1 DVDECATGThNCPANTVCVNTIGSFECRCPDG 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
672-705 3.88e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.46  E-value: 3.88e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 46249421  672 DIDECLKPSTCPEE-QCVNTPGSYQCVpCTEGFRG 705
Cdd:cd00054    1 DIDECASGNPCQNGgTCVNTVGSYRCS-CPPGYTG 34
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
736-756 4.52e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 35.85  E-value: 4.52e-03
                           10        20
                   ....*....|....*....|.
gi 46249421    736 CSCHRGYSPTPDHRHCQDIDE 756
Cdd:pfam12662    2 CSCPPGYQLDPDGRTCVDIDE 22
EGF_CA pfam07645
Calcium-binding EGF domain;
300-329 4.87e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 36.06  E-value: 4.87e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 46249421    300 DINEC-QLQGVCP-NGECLNTMGSYRCSCKMG 329
Cdd:pfam07645    1 DVDECaTGTHNCPaNTVCVNTIGSFECRCPDG 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
631-667 5.14e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 36.07  E-value: 5.14e-03
                            10        20        30
                    ....*....|....*....|....*....|....*...
gi 46249421     631 DVDECLRPDMCRDG-RCINTAGAFRCEyCDSGYRMSRR 667
Cdd:smart00179    1 DIDECASGNPCQNGgTCVNTVGSYRCE-CPPGYTDGRN 37
EGF cd00053
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
879-908 5.62e-03

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.


Pssm-ID: 238010  Cd Length: 36  Bit Score: 35.92  E-value: 5.62e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 46249421  879 ECAQPGLCGSHGECLNTQGSFHCVCEQGFS 908
Cdd:cd00053    1 ECAASNPCSNGGTCVNTPGSYRCVCPPGYT 30
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
900-921 5.66e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 35.46  E-value: 5.66e-03
                           10        20
                   ....*....|....*....|..
gi 46249421    900 HCVCEQGFSISADGRTCEDIDE 921
Cdd:pfam12662    1 TCSCPPGYQLDPDGRTCVDIDE 22
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
871-915 6.11e-03

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 39.68  E-value: 6.11e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 46249421  871 NKGCQDINECAqpglCGSHGE---CLNTQGSFHCVCEQGFSISADGRT 915
Cdd:cd01475  181 GKICVVPDLCA----TLSHVCqqvCISTPGSYLCACTEGYALLEDNKT 224
EGF_CA smart00179
Calcium-binding EGF-like domain;
672-704 7.33e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 35.69  E-value: 7.33e-03
                            10        20        30
                    ....*....|....*....|....*....|....
gi 46249421     672 DIDECLKPSTC-PEEQCVNTPGSYQCVpCTEGFR 704
Cdd:smart00179    1 DIDECASGNPCqNGGTCVNTVGSYRCE-CPPGYT 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH