|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
777-1343 |
2.24e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.91 E-value: 2.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 777 QELRKELKQQKAR-FASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEYVRKKLKLLED 855
Cdd:COG1196 216 RELKEELKELEAElLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 856 EKVILRHKYSENQDEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRTDLEEQIRILKNAL 935
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 936 DNSEAErkicEDKWQKEFEMLRTHNREREETLMTDCEWQlRQMQRQCKDKTDKSNYERKQATAKAEELELELQSRRRESE 1015
Cdd:COG1196 376 EAEEEL----EELAEELLEALRAAAELAAQLEELEEAEE-ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1016 MLRTcQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANENLEAQIEAvhkikyqcdNAIYDKERQMIYKIDEVRNEA 1095
Cdd:COG1196 451 EAEL-EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA---------EADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1096 --------AAFWENKLYTEMTRLTNELESVYVDERREALDKLQNEHIEE---------LRALTNRYTANEEELRSEIDDL 1158
Cdd:COG1196 521 glagavavLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflpLDKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1159 HESLEQKKQDFLSLRERSDNALLQTRMHLDKADreyqNAMCREEDRRVELEERLQKEFEAEKAEMEEKFRERLGQVKEEF 1238
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLE----AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1239 AKELQLSTQEMVESHRKELDSQKAKLQAEKEEALQELVERHRAKMAAADERIKFEEMRMRYERRDPRAEDLREITELRTr 1318
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE- 755
|
570 580
....*....|....*....|....*
gi 221458389 1319 cESQERDLYVLTDRLREMQIQMSEM 1343
Cdd:COG1196 756 -LPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
923-1329 |
1.34e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 1.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 923 DLEEQIRILKNALDNSEAERKicedkwqkefeMLRTHNREREEtlmtdcewQLRQMQRQCKDKTDKSNYERKQATAKAEE 1002
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALA-----------ELRKELEELEE--------ELEQLRKELEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1003 LELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANENLEAQIEAvhkikyqcdnaiydker 1082
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA----------------- 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1083 qmiykIDEVRNEAAAfwENKLYTEMTRLTNELESVYVDERREALDKLQ-----NEHIEELRALTNRYTANEEELRSEIDD 1157
Cdd:TIGR02168 805 -----LDELRAELTL--LNEEAANLRERLESLERRIAATERRLEDLEEqieelSEDIESLAAEIEELEELIEELESELEA 877
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1158 LHESLEQKKQDFLSLRERSDNA---LLQTRMHLDKADREYQNAMcreeDRRVELEERLQKefeaekaemeekFRERLGQV 1234
Cdd:TIGR02168 878 LLNERASLEEALALLRSELEELseeLRELESKRSELRRELEELR----EKLAQLELRLEG------------LEVRIDNL 941
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1235 KEEFAKELQLsTQEMVESHRKELDSQKAKLQAEKEEALQELVERHRAKMAAADErikFEEMRMRYERRDPRAEDLRE--- 1311
Cdd:TIGR02168 942 QERLSEEYSL-TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEE---YEELKERYDFLTAQKEDLTEake 1017
|
410 420
....*....|....*....|...
gi 221458389 1312 -----ITELRTRCESQERDLYVL 1329
Cdd:TIGR02168 1018 tleeaIEEIDREARERFKDTFDQ 1040
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
777-1294 |
1.64e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 66.02 E-value: 1.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 777 QELRKELKQQKARFASQLDEahknasqLEAKVGDMQFKIQKLEQELSVKqwnVERLQGELSAAHKDDEYVRKKLKLLEDE 856
Cdd:pfam12128 261 SHLHFGYKSDETLIASRQEE-------RQETSAELNQLLRTLDDQWKEK---RDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 857 KVIL-------RHKYSENQDEFQNKYDELEAQYNELTEKY-KVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRTDLEEQI 928
Cdd:pfam12128 331 HGAFldadietAAADQEQLPSWQSELENLEERLKALTGKHqDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQL 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 929 RILKNALDNSEAErkicedkWQKEFEMLRTHNREREETLMTDCEW---QLRQMQRQCKDKTDKSNYErkQATAKAEElel 1005
Cdd:pfam12128 411 AVAEDDLQALESE-------LREQLEAGKLEFNEEEYRLKSRLGElklRLNQATATPELLLQLENFD--ERIERARE--- 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1006 ELQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTlmdRIENLKGDLQSANENLEAQIEAVHKIkyqcdnaiydkerqmi 1085
Cdd:pfam12128 479 EQEAANAEVERLQSELRQARKRRDQASEALRQASR---RLEERQSALDELELQLFPQAGTLLHF---------------- 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1086 ykideVRNEAAAFWEN--KLYTEMTRLTNELESVYVDERREALDKLQNEHIEELRALTNRYTANEEELRSEIDDLHESLe 1163
Cdd:pfam12128 540 -----LRKEAPDWEQSigKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEAL- 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1164 qkkQDFLSLRERSDNALLQTRMHLDKADRE-------YQNAmcREEDRRVELEERLQKEFEAEKAEMEEKFRERLGQVKE 1236
Cdd:pfam12128 614 ---QSAREKQAAAEEQLVQANGELEKASREetfartaLKNA--RLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLE 688
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 221458389 1237 EFAKELQLSTQEMVEshrkELDSQKAKLQAEKEEALQELVERHRAKMAAADERIKFEE 1294
Cdd:pfam12128 689 AQLKQLDKKHQAWLE----EQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARR 742
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
777-1077 |
1.06e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 777 QELRKE---LKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEYVRKKLKLL 853
Cdd:TIGR02168 701 AELRKEleeLEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 854 EDEKVILRHKYSENQDEFQN---KYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRTDLEE---Q 927
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKAlreALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESlaaE 860
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 928 IRILKNALDNSEAERKICEDKWQKEFEMLRTHnREREETLMTD---CEWQLRQMQRQCKDKTDK-SNYERKQATAKAEEL 1003
Cdd:TIGR02168 861 IEELEELIEELESELEALLNERASLEEALALL-RSELEELSEElreLESKRSELRRELEELREKlAQLELRLEGLEVRID 939
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1004 ELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLKG-------DLQSANE---NLEAQIEAVHKIKYQC 1073
Cdd:TIGR02168 940 NLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPvnlaaieEYEELKErydFLTAQKEDLTEAKETL 1019
|
....
gi 221458389 1074 DNAI 1077
Cdd:TIGR02168 1020 EEAI 1023
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
781-1240 |
2.32e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 2.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 781 KELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELsvkqwnvERLQGELSAAHKDDEYVRKKLKLLEDEKVIL 860
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL-------EELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 861 rhkySENQDEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRTDL-EEQIRILKNALDNSE 939
Cdd:TIGR02168 753 ----SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 940 AERKIceDKWQKEFEMLRTHNREREETLMtdcewQLRQMQRQCKDKTDKSNYERKQATAKAEELELELQSRRRESEMLrt 1019
Cdd:TIGR02168 829 LERRI--AATERRLEDLEEQIEELSEDIE-----SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL-- 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1020 cQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANENLEAQIEAVhkikyqcdNAIYdkerQMIYKIDEVRNEAAAFW 1099
Cdd:TIGR02168 900 -SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL--------SEEY----SLTLEEAEALENKIEDD 966
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1100 ENKLYTEMTRLTNELEsvyvderreALDKLQNEHIEELRALTNRYtaneEELRSEIDDLHESLEQkkqdflslrersdna 1179
Cdd:TIGR02168 967 EEEARRRLKRLENKIK---------ELGPVNLAAIEEYEELKERY----DFLTAQKEDLTEAKET--------------- 1018
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221458389 1180 LLQTrmhLDKADREyqnamCREEdrrveleerlqkefeaekaemeekFRERLGQVKEEFAK 1240
Cdd:TIGR02168 1019 LEEA---IEEIDRE-----ARER------------------------FKDTFDQVNENFQR 1047
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
780-1350 |
2.75e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 2.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 780 RKELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEYVRKKLKLLEDEKVi 859
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE- 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 860 lrhKYSENQDEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVE-------AEEWRQQVEKIRTD---LEEQIR 929
Cdd:TIGR02168 320 ---ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEleelesrLEELEEQLETLRSKvaqLELQIA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 930 ILKNALDNSEAERKICEDKWQKEFEMLRTHNREREETLMTDCEWQLRQMQRQCKDKTDKSNYERKQATAKAEELELELQS 1009
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1010 RRRESEMLRTCQAQVNSLRGVVSEQE---QSIQTLMDRIENLKG------DLQSANENLEAQIEAV---HKIKYQCDNai 1077
Cdd:TIGR02168 477 LDAAERELAQLQARLDSLERLQENLEgfsEGVKALLKNQSGLSGilgvlsELISVDEGYEAAIEAAlggRLQAVVVEN-- 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1078 ydkerqmiykiDEVRNEAAAFWENKlytEMTRLTNELESVYVDERREALDKLQNEHIEELRALTNRYTANEEELRSEI-- 1155
Cdd:TIGR02168 555 -----------LNAAKKAIAFLKQN---ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALsy 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1156 --------DDLHESLEQKKQdfLSLRER---SDNALLQTRMHLDKADREYQNAMCREEDRRVELEERLQKEFeaekaeme 1224
Cdd:TIGR02168 621 llggvlvvDDLDNALELAKK--LRPGYRivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELE-------- 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1225 EKFRE---RLGQVKEEFAKELQLSTQEMVESHRKELDSQKAKLQAEKEEALQELVERHRAKMAAADERIKFEEM---RMR 1298
Cdd:TIGR02168 691 EKIAElekALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEeleERL 770
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 221458389 1299 YERRDPRAEDLREITELRTRCESQERDLYVLTDRLREMQIQMSEMQQNGDRK 1350
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
777-1342 |
9.06e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 9.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 777 QELRKELKQ-QKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDdeyvrkklklled 855
Cdd:TIGR02168 216 KELKAELRElELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE------------- 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 856 ekvilrhkysenQDEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQ----------VEKIRTDLE 925
Cdd:TIGR02168 283 ------------IEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKldelaeelaeLEEKLEELK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 926 EQIRILKNALDNSEAERKICEDKWQKEFEMLRTHNREREETL--MTDCEWQLRQM--------QRQCKDKTDKSNYERKQ 995
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLElqIASLNNEIERLearlerleDRRERLQQEIEELLKKL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 996 ATAKAEELELELQSRRRESEMLRTC----QAQVNSLRGVVSEQEQ-----------------SIQTLMDRIENLK----- 1049
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEElerlEEALEELREELEEAEQaldaaerelaqlqarldSLERLQENLEGFSegvka 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1050 ---------------GDLQSANENLEAQIEAV---HKIKYQCDNAiyDKERQMIYKIDEVRNEAAAFWENKL-------Y 1104
Cdd:TIGR02168 511 llknqsglsgilgvlSELISVDEGYEAAIEAAlggRLQAVVVENL--NAAKKAIAFLKQNELGRVTFLPLDSikgteiqG 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1105 TEMTRLTNE------------------------LESVY-VDERREALDKLQNEH-------------------------- 1133
Cdd:TIGR02168 589 NDREILKNIegflgvakdlvkfdpklrkalsylLGGVLvVDDLDNALELAKKLRpgyrivtldgdlvrpggvitggsakt 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1134 ----------IEELRALTNRYTANEEELRSEIDDLHESLEQKKQDFLSLR---ERSDNALLQTRMHLDKADREYQNAMCR 1200
Cdd:TIGR02168 669 nssilerrreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkelEELSRQISALRKDLARLEAEVEQLEER 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1201 EEDRRVELEERLQKEFEAEKAEMEEKFRERLGQVKEEFAKELQLSTQEMVESHRKELDSQKAKLQAEKEEALQELVERHR 1280
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 221458389 1281 AKMAAADERIKFEEMRMRYERRDPRAEDLR-EITELRTRCESQERDLYVLTDRLREMQIQMSE 1342
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAaEIEELEELIEELESELEALLNERASLEEALAL 891
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
779-1298 |
1.60e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.36 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 779 LRKELKQQKARFASQLDEAHKNASQLEAKVGDMQF----KIQKLEQEL-----SVKQWNVERLQGELSAAHKDDEYVRKK 849
Cdd:pfam15921 304 IQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRmyedKIEELEKQLvlansELTEARTERDQFSQESGNLDDQLQKLL 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 850 LKLLEDEKVILRHKYSENQ--DEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRTDLEEQ 927
Cdd:pfam15921 384 ADLHKREKELSLEKEQNKRlwDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKV 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 928 IRILKNALDNSEAERKICEDKWQKEFEMlrthnrEREETLMTDCEWQLRQMQRqckdKTDKSNYERKQATAKAEELELEL 1007
Cdd:pfam15921 464 SSLTAQLESTKEMLRKVVEELTAKKMTL------ESSERTVSDLTASLQEKER----AIEATNAEITKLRSRVDLKLQEL 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1008 QSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLkgdlqsanenleAQIEAVHKikyQCDNAIYDKERQMIYK 1087
Cdd:pfam15921 534 QHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENM------------TQLVGQHG---RTAGAMQVEKAQLEKE 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1088 IDEVRNEAAAFweNKLYTEMTRLTNELESVYVDERREALdKLQNEHIEELRALTNRYTANEEEL------RSEIDDLHES 1161
Cdd:pfam15921 599 INDRRLELQEF--KILKDKKDAKIRELEARVSDLELEKV-KLVNAGSERLRAVKDIKQERDQLLnevktsRNELNSLSED 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1162 LEQKKQDFLSLRERSDNALLQTRMHLDKADREYqnamcreedrrveleERLQKEFEAEKAEMEEKFRERLGQVKEEFAKE 1241
Cdd:pfam15921 676 YEVLKRNFRNKSEEMETTTNKLKMQLKSAQSEL---------------EQTRNTLKSMEGSDGHAMKVAMGMQKQITAKR 740
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 221458389 1242 LQL----STQEMVESHRKELDSQKAKLQAEKEEALQEL--VERHRAKMAAADERIKFEEMRMR 1298
Cdd:pfam15921 741 GQIdalqSKIQFLEEAMTNANKEKHFLKEEKNKLSQELstVATEKNKMAGELEVLRSQERRLK 803
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
974-1288 |
3.87e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 3.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 974 QLRQMQRQCKDKTDKSNYERKQATAKAEELELELQSRRRESEMLrtcQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQ 1053
Cdd:COG1196 201 QLEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEEL---EAELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1054 SANENLEAQIEAVhkikYQCDNAIYDKERQMIYKIDEVRNEAAAfwENKLYTEMTRLTNELESvyVDERREALDKLQNEH 1133
Cdd:COG1196 278 ELELELEEAQAEE----YELLAELARLEQDIARLEERRRELEER--LEELEEELAELEEELEE--LEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1134 IEELRALTNRYTANEEELRSEIDDLHEsLEQKKQDFLSLRERSDNALLQTRMHLDKADREYQNAMCREEDRRVELEERLQ 1213
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAE-AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 221458389 1214 KEFEAEKAEMEEKFRERLGQVKEEFAKELQLSTQEMVESHRKELDSQKAKLQAEKEEALQELVERHRAKMAAADE 1288
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
993-1312 |
5.25e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 5.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 993 RKQAtAKAEE-LELELQSRRRESEM----LRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSAN---ENLEAQIE 1064
Cdd:COG1196 206 ERQA-EKAERyRELKEELKELEAELlllkLRELEAELEELEAELEELEAELEELEAELAELEAELEELRlelEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1065 AVHKIKYQCDNAIYDKERQMIYKIDEVRNEAaafwenklytemtrltnelesvyvderrEALDKLQNEhIEELRALTNRY 1144
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELE----------------------------ERLEELEEE-LAELEEELEEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1145 TANEEELRSEIDDLHESLEQKKQDFLSLRERSDNALLQTRMHLDKADREYQNAMcREEDRRVELEERLQKEFEAEKAEME 1224
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL-EALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1225 EkfRERLGQVKEEFAKELQLSTQEMVESHRKELDSQKAKLQAEkEEALQELVERHRAKMAAADERIKFEEMRMRYERRDP 1304
Cdd:COG1196 415 R--LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE-EEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
....*...
gi 221458389 1305 RAEDLREI 1312
Cdd:COG1196 492 RLLLLLEA 499
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
777-1318 |
5.70e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 5.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 777 QELRK-ELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEYVRKKLKLLED 855
Cdd:PTZ00121 1299 EEKKKaDEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 856 EKVILRHKYSENQ--DEFQNKYDELEAQYNELTEKykvtqglakslqtqlACAQVEAEEWRQQVEKIRTdLEEQIRILKN 933
Cdd:PTZ00121 1379 KADAAKKKAEEKKkaDEAKKKAEEDKKKADELKKA---------------AAAKKKADEAKKKAEEKKK-ADEAKKKAEE 1442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 934 ALDNSEAERKICEDKWQKEFEMLRTHNREREETlmtdcewqlrQMQRQCKDKTDKSNYERKQATAKAEELELELQSRRRE 1013
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA----------KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1014 SEmLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANENL---EAQIEAVHKIKYQCDNAIYDKERQMIYKIDE 1090
Cdd:PTZ00121 1513 DE-AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1091 VRNEaaafwenklytemtrltnELESVYVDERREALDKLQNEHIEELRALTNRytaNEEELRSEIDDLHESLEQKKQDFL 1170
Cdd:PTZ00121 1592 ARIE------------------EVMKLYEEEKKMKAEEAKKAEEAKIKAEELK---KAEEEKKKVEQLKKKEAEEKKKAE 1650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1171 SLRERSDNALLQTRMHLDKAD---REYQNAMCREEDRRVELEERLQKEFEAEKAEMEEKFRERLGQVKEEFAKELQLSTQ 1247
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEedkKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221458389 1248 EMVESHRKELDSQKAKLQAEKEEALQELVERHRAKMAAADERIKFEEMRMRYERRDPRAEDLREITELRTR 1318
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
768-1345 |
1.22e-07 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 56.30 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 768 VRQESPLDNQELRKELKQQKARFASQLDEAHKNA-SQLEAKVGDMQFKIQKLE-------QELSVKQWNVERLQGELSAA 839
Cdd:pfam07111 130 VRKNLEEGSQRELEEIQRLHQEQLSSLTQAHEEAlSSLTSKAEGLEKSLNSLEtkrageaKQLAEAQKEAELLRKQLSKT 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 840 HKDDE---YVRKKLKLLEDEKV---ILRHKYSENQDEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEW 913
Cdd:pfam07111 210 QEELEaqvTLVESLRKYVGEQVppeVHSQTWELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRK 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 914 RQQVEKIRTDLEEQIRILKNALDNS----EAERKICEDKWQKEFEMLRTHNREREETLMTDCEWQlRQMQRQCKDKTDKS 989
Cdd:pfam07111 290 IQPSDSLEPEFPKKCRSLLNRWREKvfalMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQ-AILQRALQDKAAEV 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 990 NYERKQATAKAEELELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANENLEAQIEAVHKI 1069
Cdd:pfam07111 369 EVERMSAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTI 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1070 KyqcdnaiydkerqmiykidevrneaaAFWENKLYTEMTRltneLESVYVDERREALDKLQNEHIEELRALTNRYTAnee 1149
Cdd:pfam07111 449 K--------------------------GLMARKVALAQLR----QESCPPPPPAPPVDADLSLELEQLREERNRLDA--- 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1150 elrseidDLHESLEQKKQDFLSLRERSDnallQTRMHLDKADREYQNAMCREEDRRVELEERLQ--KEFEAEKAEMEEKF 1227
Cdd:pfam07111 496 -------ELQLSAHLIQQEVGRAREQGE----AERQQLSEVAQQLEQELQRAQESLASVGQQLEvaRQGQQESTEEAASL 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1228 RERLGQVKEEFAKELQLSTQEMVESHRKELDSQKAKLQAEKEEALQELVERHRAKMAAADERIKFEEMRMRYErrDPRAE 1307
Cdd:pfam07111 565 RQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQD--EARKE 642
|
570 580 590
....*....|....*....|....*....|....*...
gi 221458389 1308 DLREITElrtRCESQERDLYVLTDRLREMQIQMSEMQQ 1345
Cdd:pfam07111 643 EGQRLAR---RVQELERDKNLMLATLQQEGLLSRYKQQ 677
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
982-1278 |
2.27e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 982 CKDKTDKSNYERKQATAKAEELELELQSRRRESEMLrtcQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANENLEA 1061
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL---EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1062 QIEAVHKIKYQCdNAIYDKERQmiYKIDEVRNEAaafweNKLYTEMTRLTNELESVYVDERREALDK-LQNEHIEELRAL 1140
Cdd:TIGR02169 770 LEEDLHKLEEAL-NDLEARLSH--SRIPEIQAEL-----SKLEEEVSRIEARLREIEQKLNRLTLEKeYLEKEIQELQEQ 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1141 TNRYTANEEELRSEIDDLH-----------------ESLEQKKQDFLSLRERSDNALLQTRMHLDKADREYQNAMCREED 1203
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIENLNgkkeeleeeleeleaalRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1204 RRVELEERLQKEFEAEKAEMEEKFRERLGQVKEEFAKELQLSTQEM----------------VESHRKELDSQKAKLQAE 1267
Cdd:TIGR02169 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIralepvnmlaiqeyeeVLKRLDELKEKRAKLEEE 1001
|
330
....*....|.
gi 221458389 1268 KEEaLQELVER 1278
Cdd:TIGR02169 1002 RKA-ILERIEE 1011
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
876-1329 |
3.31e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 3.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 876 DELEAQYNELtekYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRtDLEEQIRILKNALDNSEAERKICEDKWQKEFEM 955
Cdd:COG4717 49 ERLEKEADEL---FKPQGRKPELNLKELKELEEELKEAEEKEEEYA-ELQEELEELEEELEELEAELEELREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 956 LRTHN----REREETLMTDCEWQLRQMQRQCKD----KTDKSNYERKQATAKAEELELELQSRRRESEMLRTCQAQVNSL 1027
Cdd:COG4717 125 LQLLPlyqeLEALEAELAELPERLEELEERLEElrelEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1028 RGVVSEQEQSIQTLMDRIENLKGDLQSANENLEAQiEAVHKIKYQC--------------DNAIYDKERQMIYKIDEVRN 1093
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARlllliaaallallgLGGSLLSLILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1094 EAAAFWENKLYTEMTRLTNELESVYVDERREALDKlqnehiEELRALTNRYTANEEELRSEIDDLHESLEQKKQDFLSLR 1173
Cdd:COG4717 284 GLLALLFLLLAREKASLGKEAEELQALPALEELEE------EELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1174 ERSDNALLQTRMHLDKADREYQNAMCREE-DRRVELEERLQKEfeaekaemeekfRERLGQVKEEFAKELQLSTQEMVES 1252
Cdd:COG4717 358 ELEEELQLEELEQEIAALLAEAGVEDEEElRAALEQAEEYQEL------------KEELEELEEQLEELLGELEELLEAL 425
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 221458389 1253 HRKELDSQKAKLQAEkEEALQELVERHRAKMAAADERIKfeemrmRYERRDPRAEDLREITELRTRCESQERDLYVL 1329
Cdd:COG4717 426 DEEELEEELEELEEE-LEELEEELEELREELAELEAELE------QLEEDGELAELLQELEELKAELRELAEEWAAL 495
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
941-1266 |
5.15e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.36 E-value: 5.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 941 ERKICEDKWQKEFEmlrthnREREETLMTDCEWQLRQMQRQCK----DKTDKSNYERkQATAKAEELELELQsrrRESEM 1016
Cdd:pfam17380 281 QKAVSERQQQEKFE------KMEQERLRQEKEEKAREVERRRKleeaEKARQAEMDR-QAAIYAEQERMAME---REREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1017 LRTCQAQVNSLRGVVSEQEQSIQ-TLMDRIENLKGDLQSANENLEAQIEAVHKIKyqcdnaIYDKERQMIYKIDEVRNEA 1095
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAMEiSRMRELERLQMERQQKNERVRQELEAARKVK------ILEEERQRKIQQQKVEMEQ 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1096 A-AFWENKLYTEMTRLTNELESVYVDERREALDKLQneHIEELRALTNRYTANEEELRSEIDDLHESLEQKKQDFLSLRE 1174
Cdd:pfam17380 425 IrAEQEEARQREVRRLEEERAREMERVRLEEQERQQ--QVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1175 RSDNALLQ---TRMHLDKADREYQNAMCREEDRRVELEERlqkeFEAEKAEMEEKFRERLGQVKEEFAKELQLSTQEMVE 1251
Cdd:pfam17380 503 ERKQAMIEeerKRKLLEKEMEERQKAIYEEERRREAEEER----RKQQEMEERRRIQEQMRKATEERSRLEAMEREREMM 578
|
330
....*....|....*
gi 221458389 1252 SHRKELDSQKAKLQA 1266
Cdd:pfam17380 579 RQIVESEKARAEYEA 593
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
911-1343 |
9.24e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 9.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 911 EEWRQQVEKIRTDLEEQIRILKNALDNSEAErkiCEDKWQKEF-EMLRTHNREREETlmtdcewqlrqmqrqcKDKTDKS 989
Cdd:PRK02224 165 EEYRERASDARLGVERVLSDQRGSLDQLKAQ---IEEKEEKDLhERLNGLESELAEL----------------DEEIERY 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 990 NYERKQATAKAEELELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLK---GDLQSAN---------- 1056
Cdd:PRK02224 226 EEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRerlEELEEERddllaeagld 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1057 ----ENLEAQIEAVHKIKYQCDNAIYDKERQmiykIDEVRNEAAAFWEN---------KLYTEMTRLTNELES--VYVDE 1121
Cdd:PRK02224 306 dadaEAVEARREELEDRDEELRDRLEECRVA----AQAHNEEAESLREDaddleeraeELREEAAELESELEEarEAVED 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1122 RREALDKLQNEhIEELRALTN-------RYTANEEELRSEIDDLHESLEQKKQDFLSLRERSDNA--LLQT----RMHLD 1188
Cdd:PRK02224 382 RREEIEELEEE-IEELRERFGdapvdlgNAEDFLEELREERDELREREAELEATLRTARERVEEAeaLLEAgkcpECGQP 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1189 KADREYQNAMCREEDRRVELEERLQKEFEAEKAEMeekfrERLGQVKEEFAKELQLST--------QEMVESHR------ 1254
Cdd:PRK02224 461 VEGSPHVETIEEDRERVEELEAELEDLEEEVEEVE-----ERLERAEDLVEAEDRIERleerredlEELIAERRetieek 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1255 ----KELDSQKAKLQAEKEEALQELVERHRAKMAAADERIKFEEMRMRYERRDPRAEDLREITELRTRCESQerdlyvlT 1330
Cdd:PRK02224 536 reraEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDE-------I 608
|
490
....*....|...
gi 221458389 1331 DRLREMQIQMSEM 1343
Cdd:PRK02224 609 ERLREKREALAEL 621
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
778-1173 |
1.11e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 778 ELRKELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEYVRKKLKLLEDEK 857
Cdd:PRK02224 314 ARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 858 VILRHKYSENQDEFQN---KYDELEAQYNELTEKYKVTQGLAKSLQTQLA-------------CAQ-VE-------AEEW 913
Cdd:PRK02224 394 EELRERFGDAPVDLGNaedFLEELREERDELREREAELEATLRTARERVEeaealleagkcpeCGQpVEgsphvetIEED 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 914 RQQVEKI---RTDLEEQIRILKNALDNSEAERKIcedkwQKEFEMLRThNREREETLMTDCEWQLrqmqrqcKDKTDKSN 990
Cdd:PRK02224 474 RERVEELeaeLEDLEEEVEEVEERLERAEDLVEA-----EDRIERLEE-RREDLEELIAERRETI-------EEKRERAE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 991 YERKQAT---AKAEELELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQS---IQTLMDRIENLKGDLQSANENLEAQIE 1064
Cdd:PRK02224 541 ELRERAAeleAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESlerIRTLLAAIADAEDEIERLREKREALAE 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1065 AVHKIKYQCDnAIYDKERQMIYKIDEVRNEAAAfwenklyTEMTRLTNELESV--YVDERREALDKLQNE------HIEE 1136
Cdd:PRK02224 621 LNDERRERLA-EKRERKRELEAEFDEARIEEAR-------EDKERAEEYLEQVeeKLDELREERDDLQAEigavenELEE 692
|
410 420 430
....*....|....*....|....*....|....*..
gi 221458389 1137 LRALTNRYTANEEELrSEIDDLHESLEQKKQDFLSLR 1173
Cdd:PRK02224 693 LEELRERREALENRV-EALEALYDEAEELESMYGDLR 728
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1119-1371 |
1.17e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1119 VDERREALDKLQNEHIEELRALtNRYTANEEELRSEIDDLHESLEQKKQDFLSLRERSDNALLQtRMHLDKADREYQNAM 1198
Cdd:COG1196 283 LEEAQAEEYELLAELARLEQDI-ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE-LEEAEEELEEAEAEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1199 CREEDRRVELEERLQKEFEAEKAEMEEKFRERLGQVKEEfakELQLSTQEMVESHRKELDSQKAKLQAEKEEALQELVER 1278
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA---AQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1279 HRAKMAAADERIKFEEMRMRYERRDPRAEDLREITELRTRCESQERDLYVLTDRLREMQIQMSEmQQNGDRKGGGKAVKK 1358
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA-DYEGFLEGVKAALLL 516
|
250
....*....|...
gi 221458389 1359 PPPKSIATSCDVI 1371
Cdd:COG1196 517 AGLRGLAGAVAVL 529
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
961-1318 |
4.83e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 4.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 961 REREETLMTDCEWQLRQMQRQCKDKTDKSNYERKQAtaKAEELELELQSRRRES--EMLRTCQAQVNSLRGVVSEQEQSI 1038
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAERYQALLK--EKREYEGYELLKEKEAleRQKEAIERQLASLEEELEKLTEEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1039 QTLMDRIENLKGDLQSANENLEA-----------QIEAVHKIKYQCDNAIYDKERQMiykidevrnEAAAFWENKLYTEM 1107
Cdd:TIGR02169 261 SELEKRLEEIEQLLEELNKKIKDlgeeeqlrvkeKIGELEAEIASLERSIAEKEREL---------EDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1108 TRLtnelesvyvDERREALDKLQNEHIEELRALTNRYtaneEELRSEIDDLHESLEQKKQDFLSLRERSDnallQTRMHL 1187
Cdd:TIGR02169 332 DKL---------LAEIEELEREIEEERKRRDKLTEEY----AELKEELEDLRAELEEVDKEFAETRDELK----DYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1188 DKADREyQNAMCREEDRRVELEERLqkefeaekaemeekfRERLGQVKEEFAKelqlstqemVESHRKELDSQKAKLQAE 1267
Cdd:TIGR02169 395 EKLKRE-INELKRELDRLQEELQRL---------------SEELADLNAAIAG---------IEAKINELEEEKEDKALE 449
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 221458389 1268 KEEALQELvERHRAKMAAADERI-KFEEMRMRYERRDPRAEdlREITELRTR 1318
Cdd:TIGR02169 450 IKKQEWKL-EQLAADLSKYEQELyDLKEEYDRVEKELSKLQ--RELAEAEAQ 498
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
781-1275 |
4.87e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 4.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 781 KELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVER---LQGELSAAHKDDEYVRKKLKLLEDEK 857
Cdd:TIGR04523 162 NDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKnksLESQISELKKQNNQLKDNIEKKQQEI 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 858 VILRHKYSENQDEFQNKYDELEAQYNELTEKYK---VTQGLAKSLQTQLACAQVE--------AEEWRQQVEKIRTDLEE 926
Cdd:TIGR04523 242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKeleQNNKKIKELEKQLNQLKSEisdlnnqkEQDWNKELKSELKNQEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 927 QIRILKNALDNSeaERKICEDKWQ-----KEFEMLRTHNREREETLmTDCEWQLRQMQRQCKDKTDksnyERKQATAKAE 1001
Cdd:TIGR04523 322 KLEEIQNQISQN--NKIISQLNEQisqlkKELTNSESENSEKQREL-EEKQNEIEKLKKENQSYKQ----EIKNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1002 ELELELQSRRRESEMLrtcQAQVNSLrgvvseqEQSIQTLMDRIENLKGDLQSANE---NLEAQIeAVHKIKYQCDNAIY 1078
Cdd:TIGR04523 395 DLESKIQNQEKLNQQK---DEQIKKL-------QQEKELLEKEIERLKETIIKNNSeikDLTNQD-SVKELIIKNLDNTR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1079 DKERQMIYKIDEVRNEAAAFWENKlYTEMTRLTNELESVyvderrEALDKLQNEHIEELRALTNRYTANEEELRSEIDDL 1158
Cdd:TIGR04523 464 ESLETQLKVLSRSINKIKQNLEQK-QKELKSKEKELKKL------NEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEK 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1159 HESLEQKKQDFLSLRERSDNALLQTRM-HLDKADREYQNAMCREEDRRVELEERLQKEFEAEKAEMEEKfrERLGQVKEE 1237
Cdd:TIGR04523 537 ESKISDLEDELNKDDFELKKENLEKEIdEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI--EEKEKKISS 614
|
490 500 510
....*....|....*....|....*....|....*...
gi 221458389 1238 FAKELqlstqEMVESHRKELDSQKAKLQAEKEEALQEL 1275
Cdd:TIGR04523 615 LEKEL-----EKAKKENEKLSSIIKNIKSKKNKLKQEV 647
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
771-1284 |
5.04e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 5.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 771 ESPLDNQELRKELKQQKARFA---SQLDEAHKNASQLEAKVGDMQ---------FKIQKLEQELSVKQWNVERLQGELSA 838
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIReleERIEELKKEIEELEEKVKELKelkekaeeyIKLSEFYEEYLDELREIEKRLSRLEE 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 839 AHKDdeyVRKKLKLLEDEKVILRhKYSENQDEFQNKYDELEaQYNELTEKYKVTQGLAKSLQTQLACAQVE-AEEWRQQV 917
Cdd:PRK03918 322 EING---IEERIKELEEKEERLE-ELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTPEkLEKELEEL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 918 EKIRTDLEEQIRIL---KNALDNSEAERKICEDKWQKEFEMLRTHNREREEtlmtdcEWQLRQMQRQCKDKTDKSNyerk 994
Cdd:PRK03918 397 EKAKEEIEEEISKItarIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE------EHRKELLEEYTAELKRIEK---- 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 995 qATAKAEELELELQSRRRESEMLRTCQAQVNSLRgvvseqeqsiqTLMDRIENLKGDLQSAN-ENLEAQIEAVHKIKYQC 1073
Cdd:PRK03918 467 -ELKEIEEKERKLRKELRELEKVLKKESELIKLK-----------ELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKL 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1074 DNAIYDKER--QMIYKIDEVRNEAAAFwENKLYT---EMTRLTNELESV------YVDERREALDKLQNEHIE------E 1136
Cdd:PRK03918 535 IKLKGEIKSlkKELEKLEELKKKLAEL-EKKLDEleeELAELLKELEELgfesveELEERLKELEPFYNEYLElkdaekE 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1137 LRALTNRYtaneEELRSEIDDLHESLEQKKQDFLSLRERsdnallqtrmhLDKADREYQNAMCRE-EDRRVELEERLQKE 1215
Cdd:PRK03918 614 LEREEKEL----KKLEEELDKAFEELAETEKRLEELRKE-----------LEELEKKYSEEEYEElREEYLELSRELAGL 678
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 221458389 1216 FEAEkaemeekfrERLGQVKEEFAKELQLSTQEMVESHRKELDSQKAKLQAEKEEALQELVERHRAKMA 1284
Cdd:PRK03918 679 RAEL---------EELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLK 738
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
918-1359 |
5.32e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 5.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 918 EKIRTDLEEQIRILKNALDNSEAERKIceDKWQKefemlrthNREREETLMTDCEWQLRQMQRQCKdKTDKsnYERKqat 997
Cdd:TIGR02168 155 EERRAIFEEAAGISKYKERRKETERKL--ERTRE--------NLDRLEDILNELERQLKSLERQAE-KAER--YKEL--- 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 998 aKAEELELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANENLEAQIEAVHKIKYQCDNAI 1077
Cdd:TIGR02168 219 -KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1078 YDKERQMIYKidevrneaaafwenklytemtrltnelesvyvDERREALDKLQNEHIEELraltnrytaneEELRSEIDD 1157
Cdd:TIGR02168 298 SRLEQQKQIL--------------------------------RERLANLERQLEELEAQL-----------EELESKLDE 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1158 LHESLEQKKQDFLSLRERSDNALLQtrmhLDKADREYQNAMCREEDRRVELEErlqkefeaekaemeekFRERLGQVKEE 1237
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAE----LEELEAELEELESRLEELEEQLET----------------LRSKVAQLELQ 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1238 faKELQLSTQEMVESHRKELDSQKAKLQAEKEEALQELVE--RHRAKMAAADERIKFEEMRMRYERRDPRAEDLR-EITE 1314
Cdd:TIGR02168 395 --IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaeLKELQAELEELEEELEELQEELERLEEALEELReELEE 472
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 221458389 1315 LRTRCESQERDLYVLTDRLREMQIQMSEMQQNGDrkgGGKAVKKP 1359
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLEGFSE---GVKALLKN 514
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
811-1302 |
6.72e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 6.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 811 MQFKIQKLEQELSVKQWNVERLQGELSAAHKDD-EYVRKKLKLLEDEKVILRHKYSEnQDEFQNKYDELEAQYNELTEKY 889
Cdd:COG4717 40 LAFIRAMLLERLEKEADELFKPQGRKPELNLKElKELEEELKEAEEKEEEYAELQEE-LEELEEELEELEAELEELREEL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 890 KVTQGLA---------KSLQTQLACAQVEAEEWRQQVEKIRtDLEEQIRILKNALDNSEAERkicedkwQKEFEMLRTHN 960
Cdd:COG4717 119 EKLEKLLqllplyqelEALEAELAELPERLEELEERLEELR-ELEEELEELEAELAELQEEL-------EELLEQLSLAT 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 961 REREETLMTDCEwQLRQMQRQCKDKTDKSNYERKQATAKAEELELELQSRRRESEMLRTCQAQVnsLRGVVSEQEQSIQT 1040
Cdd:COG4717 191 EEELQDLAEELE-ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL--IAAALLALLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1041 LMDRIENLKGDLQSANENLEAQIEAVHKIKYQCDNAIydKERQMIYKIDEVRNEAAAFWENKLYTEMTRLTNELESVY-- 1118
Cdd:COG4717 268 LLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA--EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLdr 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1119 VDERREALDKL--------QNEHIEELRALTNRYTANEEELRSEIDDLHESLEQKKQDFLSLRERSDNALLQTRMHLDKA 1190
Cdd:COG4717 346 IEELQELLREAeeleeelqLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEAL 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1191 DREyqnamcreedrrvELEERLQKEFEAEKAEmeekfRERLGQVKEEFAkELQLSTQEMVESHrkELDSQKAKLQAEKEE 1270
Cdd:COG4717 426 DEE-------------ELEEELEELEEELEEL-----EEELEELREELA-ELEAELEQLEEDG--ELAELLQELEELKAE 484
|
490 500 510
....*....|....*....|....*....|..
gi 221458389 1271 aLQELVERHRAKMAAadeRIKFEEMRMRYERR 1302
Cdd:COG4717 485 -LRELAEEWAALKLA---LELLEEAREEYREE 512
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
830-1068 |
1.02e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 830 ERLQGELSAAHKDDEYVRKKLKLLEDEKvilrhkysenqDEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVE 909
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEE-----------KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 910 AEEWRQQVEKIRTDLEEQIR------------ILKNALDNSEAERKicedkwqkeFEMLRTHNREREEtlmtdcewQLRQ 977
Cdd:COG4942 92 IAELRAELEAQKEELAELLRalyrlgrqpplaLLLSPEDFLDAVRR---------LQYLKYLAPARRE--------QAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 978 MQRQCKDKTDKsnyeRKQATAKAEELELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANE 1057
Cdd:COG4942 155 LRADLAELAAL----RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
250
....*....|.
gi 221458389 1058 NLEAQIEAVHK 1068
Cdd:COG4942 231 RLEAEAAAAAE 241
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
777-1328 |
1.28e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 777 QELRKELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAhkddeyvRKKLKLLEDE 856
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL-------AADLSKYEQE 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 857 KVILRHKYSENQDEF---QNKYDELEAQ-------------------------YNELTEKYKVTQGLAKSLQT----QLA 904
Cdd:TIGR02169 471 LYDLKEEYDRVEKELsklQRELAEAEAQaraseervrggraveevlkasiqgvHGTVAQLGSVGERYATAIEVaagnRLN 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 905 CAQVEAEEWRQQ-----------------VEKIRTDLEEQIRILKN-----ALDNSEAERKICE---------------- 946
Cdd:TIGR02169 551 NVVVEDDAVAKEaiellkrrkagratflpLNKMRDERRDLSILSEDgvigfAVDLVEFDPKYEPafkyvfgdtlvvedie 630
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 947 ----------------DKWQKEFEMLRTHNREREETLMTDCEW-QLRQMQRQ----------CKDKTDKSNYERKQATAK 999
Cdd:TIGR02169 631 aarrlmgkyrmvtlegELFEKSGAMTGGSRAPRGGILFSRSEPaELQRLRERleglkrelssLQSELRRIENRLDELSQE 710
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1000 AEELELELQSRRRESEMLrtcQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANENLEAQIEAVHKIKYQCdNAIYD 1079
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQL---EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL-NDLEA 786
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1080 KERQmiYKIDEVRNEAaafweNKLYTEMTRLTNELESVYVDERREALDK-LQNEHIEELRALTNRYTANEEELRSEIddl 1158
Cdd:TIGR02169 787 RLSH--SRIPEIQAEL-----SKLEEEVSRIEARLREIEQKLNRLTLEKeYLEKEIQELQEQRIDLKEQIKSIEKEI--- 856
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1159 hESLEQKKQDFLSLRERSDNALLQTRMHLDKADREYQNAmcREEDRRVELEERLQKEFEAEKAEMEEKFRERLGQVKEEF 1238
Cdd:TIGR02169 857 -ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL--EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1239 aKELQLSTQEMVESHRKELDSQkaKLQAEKEEALQELVERHRAKMAAADErikFEEMRMRY----ERRDPRAEDLREITE 1314
Cdd:TIGR02169 934 -SEIEDPKGEDEEIPEEELSLE--DVQAELQRVEEEIRALEPVNMLAIQE---YEEVLKRLdelkEKRAKLEEERKAILE 1007
|
650
....*....|....
gi 221458389 1315 LRTRCESQERDLYV 1328
Cdd:TIGR02169 1008 RIEEYEKKKREVFM 1021
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
813-1346 |
3.45e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 813 FKIQKLEQELSVKQwNVERLQGElsaAHKDDEYVRKKLKLLEDEkvilRHKYSENQDEFQNKYDELEAQYNELTEKYKVT 892
Cdd:PRK03918 176 RRIERLEKFIKRTE-NIEELIKE---KEKELEEVLREINEISSE----LPELREELEKLEKEVKELEELKEEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 893 QGLAKSLQTqLACAQVEAEEWRQQVEKIRTDLEEQIRILKNALDNSEAERKIcedkwQKEFEMLRTHNREREETLmTDCE 972
Cdd:PRK03918 248 ESLEGSKRK-LEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKL-----SEFYEEYLDELREIEKRL-SRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 973 WQLRQMQRQCKDKTDKSnyerkqatAKAEELELELQSRRRESEMLRTcqaqvnslrgvVSEQEQSIQTLMDRIENLKGDL 1052
Cdd:PRK03918 321 EEINGIEERIKELEEKE--------ERLEELKKKLKELEKRLEELEE-----------RHELYEEAKAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1053 QSAN-ENLEAQIEAVHKIKYQcdnaIYDKERQMIYKIDEVRNEAAafwenklytEMTRLTNELESVYVDE---RREaldk 1128
Cdd:PRK03918 382 TGLTpEKLEKELEELEKAKEE----IEEEISKITARIGELKKEIK---------ELKKAIEELKKAKGKCpvcGRE---- 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1129 LQNEHIEELralTNRYTANEEELRSEIDDLHESLEQKKQDFLSLrersDNALLQTRmhldKADREYQNAmcreeDRRVEL 1208
Cdd:PRK03918 445 LTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELREL----EKVLKKES----ELIKLKELA-----EQLKEL 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1209 EERLQK----EFEAEKAEMEEKFRERLGQVKEEFAKELQLSTQEMVESHRKELDSQKAKLQAEKEEALQELVERHRAKMA 1284
Cdd:PRK03918 509 EEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE 588
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 221458389 1285 AADERIK-FEEMRMRYERRDPRAEDLREITELRTRCESQ----ERDLYVLTDRLREMQIQMSEMQQN 1346
Cdd:PRK03918 589 ELEERLKeLEPFYNEYLELKDAEKELEREEKELKKLEEEldkaFEELAETEKRLEELRKELEELEKK 655
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
777-943 |
3.65e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 3.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 777 QELRKELKQQKARFASQLDEAHKNASQL---EAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEYVRKKLKLL 853
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLaalERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 854 ----------EDEKVILRHKYSENQDEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRTD 923
Cdd:COG4942 110 lralyrlgrqPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAA 189
|
170 180
....*....|....*....|
gi 221458389 924 LEEQIRILKNALDNSEAERK 943
Cdd:COG4942 190 LEALKAERQKLLARLEKELA 209
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
866-1346 |
3.87e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 3.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 866 ENQDEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRTDLEEQIRILKNALdnSEAERkIC 945
Cdd:pfam15921 264 QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSEL--REAKR-MY 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 946 EDKWQKEFEMLRTHNREREETlmtdcewqlrqmqrqcKDKTDKSNYERKQATAKAEELELELQSRRRESEMlrtcqaqvn 1025
Cdd:pfam15921 341 EDKIEELEKQLVLANSELTEA----------------RTERDQFSQESGNLDDQLQKLLADLHKREKELSL--------- 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1026 slrgvvsEQEQSiQTLMDR-------IENLKGDLQsaNENLEAQ-IEAVHK-IKYQCDNAIydkERQMiykidevrneAA 1096
Cdd:pfam15921 396 -------EKEQN-KRLWDRdtgnsitIDHLRRELD--DRNMEVQrLEALLKaMKSECQGQM---ERQM----------AA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1097 AFWENKLYTEMTRLTNELESVyvderREALDKLqnehIEELRALTNRYTANEE---ELRSEIDDLHESLEQKKQDFLSLR 1173
Cdd:pfam15921 453 IQGKNESLEKVSSLTAQLEST-----KEMLRKV----VEELTAKKMTLESSERtvsDLTASLQEKERAIEATNAEITKLR 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1174 ERSDnALLQTRMHLDKADREYQNAMCREEDRRVELEERlqKEFEAEKAEMEEKFRERLGQVKEEFAKELQLSTQEMVESH 1253
Cdd:pfam15921 524 SRVD-LKLQELQHLKNEGDHLRNVQTECEALKLQMAEK--DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIN 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1254 RKELDSQKAKLQAEKEEA-LQEL------VERHRAKMAAADErikfEEMRMRYERRDPRAEDLREITELRTRCESQERDL 1326
Cdd:pfam15921 601 DRRLELQEFKILKDKKDAkIRELearvsdLELEKVKLVNAGS----ERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY 676
|
490 500
....*....|....*....|
gi 221458389 1327 YVLTDRLREMQIQMsEMQQN 1346
Cdd:pfam15921 677 EVLKRNFRNKSEEM-ETTTN 695
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
777-928 |
6.28e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 777 QELRKELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEY--VRKKLKLLE 854
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYeaLQKEIESLK 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 221458389 855 DEKVILRHKYSENQDEFqnkyDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRTDLEEQI 928
Cdd:COG1579 103 RRISDLEDEILELMERI----EELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
778-1325 |
1.23e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 778 ELRKELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLE-QELSVKQWNVERLQGELSAA---HKDDEYVRKKLKLL 853
Cdd:pfam12128 287 ELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEdQHGAFLDADIETAAADQEQLpswQSELENLEERLKAL 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 854 EDEKVILRHKY--------SENQDEFQNKYDELEAQYNE----LTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQvekir 921
Cdd:pfam12128 367 TGKHQDVTAKYnrrrskikEQNNRDIAGIKDKLAKIREArdrqLAVAEDDLQALESELREQLEAGKLEFNEEEYR----- 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 922 tdLEEQIRILKNALDNSEAERKICEDKWQKEFEMlrTHNREREETLMTDCEwQLRQMQRQCKDKTDKSNYERKQATAKAE 1001
Cdd:pfam12128 442 --LKSRLGELKLRLNQATATPELLLQLENFDERI--ERAREEQEAANAEVE-RLQSELRQARKRRDQASEALRQASRRLE 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1002 ELELELQS----------------------------RRRESEMLRTCQ----------AQVNSLRGV--------VSEQE 1035
Cdd:pfam12128 517 ERQSALDElelqlfpqagtllhflrkeapdweqsigKVISPELLHRTDldpevwdgsvGGELNLYGVkldlkridVPEWA 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1036 QSIQTLMDRIENLKGDLQSANENLEAQIEAVHKIKYQCDNAIYDKER----------QMIYKIDEVRNEAAAFweNKLYT 1105
Cdd:pfam12128 597 ASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFartalknarlDLRRLFDEKQSEKDKK--NKALA 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1106 EMTRLTNElESVYVDERREALDKLQNEHIEELR--ALTNRyTANEEELRSEIDDLHESLEQKKQDFLSLRERSDNAL--L 1181
Cdd:pfam12128 675 ERKDSANE-RLNSLEAQLKQLDKKHQAWLEEQKeqKREAR-TEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELkaL 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1182 QTRMH--LDKADREYQNAMCREEDRRvELEERLQKEFEAEKAEMEEK--FRERLGQVKEEFAKELqlstqEMVESHRKEL 1257
Cdd:pfam12128 753 ETWYKrdLASLGVDPDVIAKLKREIR-TLERKIERIAVRRQEVLRYFdwYQETWLQRRPRLATQL-----SNIERAISEL 826
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 221458389 1258 DSQKAKLQAEKEEALQEL-VERH--RAKMAAADERIKFEEMRMRY---ERRDPRAEDLREITELRTRCESQERD 1325
Cdd:pfam12128 827 QQQLARLIADTKLRRAKLeMERKasEKQQVRLSENLRGLRCEMSKlatLKEDANSEQAQGSIGERLAQLEDLKL 900
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
777-1257 |
1.27e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 777 QELRKELKQQKARfASQLDEAHKNASQLEAKVGDMQFKIQKLEQELsvkqwnvERLQGELSAAHKDDEYVRKKLKLlede 856
Cdd:COG4717 74 KELEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEELREEL-------EKLEKLLQLLPLYQELEALEAEL---- 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 857 kvilrhkysenqDEFQNKYDELEAQYNELTEkykvtqglakslqtqlacAQVEAEEWRQQVEKIRTDLEEQIRILKNALD 936
Cdd:COG4717 142 ------------AELPERLEELEERLEELRE------------------LEEELEELEAELAELQEELEELLEQLSLATE 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 937 NSEAERKICEDKWQKEFEMLRTHNREREETLMtDCEWQLRQMQRQCKDKTDKSNYERKQATAKAEELELELQ-------- 1008
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEELEEAQEELE-ELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLglggslls 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1009 SRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANENLEAQIEAVHkIKYQCDNAIYDKERQMIYKI 1088
Cdd:COG4717 271 LILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG-LPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1089 DEVRNEAAAfWENKLYTE--MTRLTNELESVYVDERREALDKLqnEHIEELRALTNRYTANEEELRSEIDDLHESLEQKK 1166
Cdd:COG4717 350 QELLREAEE-LEEELQLEelEQEIAALLAEAGVEDEEELRAAL--EQAEEYQELKEELEELEEQLEELLGELEELLEALD 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1167 QDFLSLRersdnaLLQTRMHLDKADREYQNAMCREEDRRVELEERLQKEFEAEKAEMEEKFRERLGQVKEEFAKeLQLsT 1246
Cdd:COG4717 427 EEELEEE------LEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAA-LKL-A 498
|
490
....*....|.
gi 221458389 1247 QEMVESHRKEL 1257
Cdd:COG4717 499 LELLEEAREEY 509
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
776-1063 |
1.35e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 776 NQELRKELKQQKARFA---SQLDEAHKNASQLEAkvgdmqfKIQKLEQELSVKQWNVERLQGELsaahkddeyvRKKLKL 852
Cdd:TIGR04523 309 NKELKSELKNQEKKLEeiqNQISQNNKIISQLNE-------QISQLKKELTNSESENSEKQREL----------EEKQNE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 853 LEDEKvilrhkySENQDEFQNKYDeLEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKI---RTDLEEQIR 929
Cdd:TIGR04523 372 IEKLK-------KENQSYKQEIKN-LESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLketIIKNNSEIK 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 930 ILKNALDNSEAERKICEDKWQKEFEMLRTHNREREETlmtdcEWQLRQMQRQCKDKTDksnyERKQATAKAEELELELQS 1009
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI-----KQNLEQKQKELKSKEK----ELKKLNEEKKELEEKVKD 514
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 221458389 1010 RRRESEMLRTCQAQVNSLrgvVSEQEQSIQTLMDRIENLKGDLQsaNENLEAQI 1063
Cdd:TIGR04523 515 LTKKISSLKEKIEKLESE---KKEKESKISDLEDELNKDDFELK--KENLEKEI 563
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
769-1007 |
2.06e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 769 RQESPLDN-QELRKELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEYVR 847
Cdd:TIGR02169 699 RIENRLDElSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLE 778
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 848 KKLKLLEDekvilrhkySENQDEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVeAEEWRQQVEKIRTDLEEQ 927
Cdd:TIGR02169 779 EALNDLEA---------RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY-LEKEIQELQEQRIDLKEQ 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 928 IRILKNALDNSEAERKicedKWQKEFEMLRTHNREREETL------MTDCEWQLRQMQR---QCKDKTDKSNYERKQATA 998
Cdd:TIGR02169 849 IKSIEKEIENLNGKKE----ELEEELEELEAALRDLESRLgdlkkeRDELEAQLRELERkieELEAQIEKKRKRLSELKA 924
|
....*....
gi 221458389 999 KAEELELEL 1007
Cdd:TIGR02169 925 KLEALEEEL 933
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
835-1066 |
2.17e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 835 ELSAAHKDDEYVRKKLKLLEDEKvilrhkysenqdefqnkydELEAQYNELTEKYKVTQGLAKSLQtqLACAQVEAEEWR 914
Cdd:COG4913 236 DLERAHEALEDAREQIELLEPIR-------------------ELAERYAAARERLAELEYLRAALR--LWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 915 QQVEKIRTDL---EEQIRILKNALDNSEAERKICEDKwqkefemLRTHNREREETLmtdcEWQLRQMQRQCKDKTDKsny 991
Cdd:COG4913 295 AELEELRAELarlEAELERLEARLDALREELDELEAQ-------IRGNGGDRLEQL----EREIERLERELEERERR--- 360
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 221458389 992 eRKQATAKAEELELELQSRRREsemLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANENLEAQIEAV 1066
Cdd:COG4913 361 -RARLEALLAALGLPLPASAEE---FAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1091-1387 |
2.29e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1091 VRNEAAAFWENKLYTEMTRLTNELESVYVDERREALDKLQNEHIEElraltnrytaNEEELRSEIDDLHESLEQKKQDFL 1170
Cdd:pfam17380 258 VRYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQ----------EKEEKAREVERRRKLEEAEKARQA 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1171 SLRERSDNALLQTRMHLDkadREYQNAMCREEDRRVELEERLQKEFEAEKAEMEEKFRERL--GQVKEEFAKELQLS-TQ 1247
Cdd:pfam17380 328 EMDRQAAIYAEQERMAME---RERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMerQQKNERVRQELEAArKV 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1248 EMVESHR----KELDSQKAKLQAEKEEALQELVERHRAKMAAADERIKFEEM-------RMRYERRDPRAEDLREITELR 1316
Cdd:pfam17380 405 KILEEERqrkiQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQerqqqveRLRQQEEERKRKKLELEKEKR 484
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221458389 1317 TRCESQERDLYVLTDRLREMQIQMSEMQQNgdrkgggkavKKPPPKSIATSCDVIYEENEERESPDKENGE 1387
Cdd:pfam17380 485 DRKRAEEQRRKILEKELEERKQAMIEEERK----------RKLLEKEMEERQKAIYEEERRREAEEERRKQ 545
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
781-1060 |
2.52e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 781 KELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAA-----HKDDEYVRKKLKLLED 855
Cdd:pfam05483 338 EELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMtkfknNKEVELEELKKILAED 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 856 EKVILRHKysenqdEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRTDLEEQirILKNAL 935
Cdd:pfam05483 418 EKLLDEKK------QFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKE--KLKNIE 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 936 DNSEAERKICEDK--WQKEFEMLRTHNREREEtlMTDCEWQLRQMQRQCKDKTDKSNYERKQATAKAEELeleLQSRRRE 1013
Cdd:pfam05483 490 LTAHCDKLLLENKelTQEASDMTLELKKHQED--IINCKKQEERMLKQIENLEEKEMNLRDELESVREEF---IQKGDEV 564
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 221458389 1014 SEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLKGDLQSANENLE 1060
Cdd:pfam05483 565 KCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIE 611
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
979-1385 |
2.66e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 979 QRQCKDKTDKSNYERKQAtaKAEELELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQsiqTLMDRIENLKgdlqsanen 1058
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQ--EKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQER---MAMERERELE--------- 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1059 leaqieavhKIKYQcdnaiyDKERQMiykiDEVRNEAAAFwenklytEMTRLtNELESVYVDERRealdklQNEHIEELR 1138
Cdd:pfam17380 352 ---------RIRQE------ERKREL----ERIRQEEIAM-------EISRM-RELERLQMERQQ------KNERVRQEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1139 ALTNRYTANEEELRSEIDDLHESLEQKKQDFLSLRERSDNALLQTR------MHLDKADREYQNAMCR--EEDRR----- 1205
Cdd:pfam17380 399 EAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERaremerVRLEEQERQQQVERLRqqEEERKrkkle 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1206 VELEERLQKEFEAekaemeekfrerlgQVKEEFAKELQLSTQEMVESHRKeldsqKAKLQAEKEEALQELVERHRAKMaA 1285
Cdd:pfam17380 479 LEKEKRDRKRAEE--------------QRRKILEKELEERKQAMIEEERK-----RKLLEKEMEERQKAIYEEERRRE-A 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1286 ADERIKFEEMrmryERRDPRAEDLREITELRTRCESQERDlyvltdrlREMQIQMSEMQqngdrkgggKAVKKPPPKSIA 1365
Cdd:pfam17380 539 EEERRKQQEM----EERRRIQEQMRKATEERSRLEAMERE--------REMMRQIVESE---------KARAEYEATTPI 597
|
410 420
....*....|....*....|.
gi 221458389 1366 TSCDVIYEEN-EERESPDKEN 1385
Cdd:pfam17380 598 TTIKPIYRPRiSEYQPPDVES 618
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
764-1164 |
4.05e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.90 E-value: 4.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 764 LNKPVRQESPLDNQELRKELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELsvkqwnvERLQGELSAAHKDD 843
Cdd:PRK11281 45 LDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAEL-------EALKDDNDEETRET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 844 eYVRKKLKLLEDekvilrhKYSENQDEFQNKYDELeAQYNeltekykvtqGLAKSLQTQLACAQVEAEEWRQQVEKIRtd 923
Cdd:PRK11281 118 -LSTLSLRQLES-------RLAQTLDQLQNAQNDL-AEYN----------SQLVSLQTQPERAQAALYANSQRLQQIR-- 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 924 leeqiRILKNALDNSEAERKICEDKWQKEFEMLRTHNREREE-----TLMTDCE--------WQLRQMQRQCKDKTDKSN 990
Cdd:PRK11281 177 -----NLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKslegnTQLQDLLqkqrdyltARIQRLEHQLQLLQEAIN 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 991 YER-KQATAKAEELEL---------------ELQSRRRESEMLRTCQAQVNSLrgvvSEQEQSIQTLMDRienlkgdLQS 1054
Cdd:PRK11281 252 SKRlTLSEKTVQEAQSqdeaariqanplvaqELEINLQLSQRLLKATEKLNTL----TQQNLRVKNWLDR-------LTQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1055 ANENLEAQIEAVH------KIKYQCDNAI-YDKE-----------RQMIYKIDEVRNE---AAAFWEN---KLYTEMT-R 1109
Cdd:PRK11281 321 SERNIKEQISVLKgslllsRILYQQQQALpSADLiegladriadlRLEQFEINQQRDAlfqPDAYIDKleaGHKSEVTdE 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 221458389 1110 LTNELESVyVDERREALDKLqnehIEELRALTN---RYTANEEELRSEIDDLHESLEQ 1164
Cdd:PRK11281 401 VRDALLQL-LDERRELLDQL----NKQLNNQLNlaiNLQLNQQQLLSVSDSLQSTLTQ 453
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1089-1346 |
4.82e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 4.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1089 DEVRNEAAAFWENKLYTEMTRLTNELESVYVDERRE----ALDKLQNEHIEELRALTNRYTAN-EEELRSEIDDLHESLE 1163
Cdd:COG3206 113 EASREAAIERLRKNLTVEPVKGSNVIEISYTSPDPElaaaVANALAEAYLEQNLELRREEARKaLEFLEEQLPELRKELE 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1164 QKKQDFLSLRERSDNALLQTRMHLdkadreyqnamcrEEDRRVELEERLQKEFEAEKAEmeekfRERLGQVKEEFAKELQ 1243
Cdd:COG3206 193 EAEAALEEFRQKNGLVDLSEEAKL-------------LLQQLSELESQLAEARAELAEA-----EARLAALRAQLGSGPD 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1244 LSTQEMVESHRKELDSQKAKLQAEKEEALQELVERH------RAKMAAADERIKFEEMRMRYERRDPRAEDLREITELRT 1317
Cdd:COG3206 255 ALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHpdvialRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQA 334
|
250 260
....*....|....*....|....*....
gi 221458389 1318 RCESQERDLyvltDRLREMQIQMSEMQQN 1346
Cdd:COG3206 335 QLAQLEARL----AELPELEAELRRLERE 359
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
777-1143 |
4.96e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 777 QELRKELKQQKarfaSQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEYVRKKLKLLEDE 856
Cdd:pfam05483 467 EHYLKEVEDLK----TELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEK 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 857 KVILRHKYSENQDEFQNKYDELEaqyneltekykvtqglakslqtqlaCAQVEAEEWRQQVEKIRTDLEEQIRILKNALD 936
Cdd:pfam05483 543 EMNLRDELESVREEFIQKGDEVK-------------------------CKLDKSEENARSIEYEVLKKEKQMKILENKCN 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 937 NSeaeRKICEDKwqkefemlrthNREREEtlmtdcewqLRQMQRQCKDKTDKSNYERKQATAKAEELELELQSRRRE-SE 1015
Cdd:pfam05483 598 NL---KKQIENK-----------NKNIEE---------LHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKfEE 654
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1016 MLRTCQAQVNSLRgvVSEqeqsiqtlmdriENLKGDLQSANENLEAQIEAVHKIKYQCDN------AIYDKERQMIYKID 1089
Cdd:pfam05483 655 IIDNYQKEIEDKK--ISE------------EKLLEEVEKAKAIADEAVKLQKEIDKRCQHkiaemvALMEKHKHQYDKII 720
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 221458389 1090 EVRNEAAAFWENK----------LYTEMTRLTNELESV--YVDERREALDKLQNEHIEELRALTNR 1143
Cdd:pfam05483 721 EERDSELGLYKNKeqeqssakaaLEIELSNIKAELLSLkkQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
793-1343 |
8.57e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 8.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 793 QLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQwnvERLQGELSAAHKDDEyvrkklklledekviLRHKYSENQDEFQ 872
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKHQQLCEEKNALQ---EQLQAETELCAEAEE---------------MRARLAARKQELE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 873 NKYDELEAQYNELTEKYKVTQGLAKSLQTQLAC--AQVEAEE-WRQ--QVEKIRTD-----LEEQIRILKNALDNSEAER 942
Cdd:pfam01576 75 EILHELESRLEEEEERSQQLQNEKKKMQQHIQDleEQLDEEEaARQklQLEKVTTEakikkLEEDILLLEDQNSKLSKER 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 943 KICEDKW---------QKEFEMLRTHNREREETLMTDCEWQLRqmqrqckdKTDKSNYERKQATAKAEELELELQsrrre 1013
Cdd:pfam01576 155 KLLEERIseftsnlaeEEEKAKSLSKLKNKHEAMISDLEERLK--------KEEKGRQELEKAKRKLEGESTDLQ----- 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1014 sEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIE---NLKGDLQSANENLEAQIEAVHKikyqcdnaIYDKERQMIYKIDE 1090
Cdd:pfam01576 222 -EQIAELQAQIAELRAQLAKKEEELQAALARLEeetAQKNNALKKIRELEAQISELQE--------DLESERAARNKAEK 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1091 VRNEaaafwenkLYTEMTRLTNELESVY--VDERREALDKLQNEHIEELRAL---TNRYTANEEELR----SEIDDLHES 1161
Cdd:pfam01576 293 QRRD--------LGEELEALKTELEDTLdtTAAQQELRSKREQEVTELKKALeeeTRSHEAQLQEMRqkhtQALEELTEQ 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1162 LEQKKQDFLSLrERSDNALLQTRMHLDKADREYQNAMCREEDRRVELEERLQKEFEAEKAEMEEkfRERLGQVKEEFAKE 1241
Cdd:pfam01576 365 LEQAKRNKANL-EKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQ--RAELAEKLSKLQSE 441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1242 LQLSTQEMVESHRKELDSQK--AKLQAEKEEALQELVERHRAKMAAAderikfEEMRMRYERRDPRAEDLREITELRtrc 1319
Cdd:pfam01576 442 LESVSSLLNEAEGKNIKLSKdvSSLESQLQDTQELLQEETRQKLNLS------TRLRQLEDERNSLQEQLEEEEEAK--- 512
|
570 580
....*....|....*....|....
gi 221458389 1320 ESQERDLYVLTDRLREMQIQMSEM 1343
Cdd:pfam01576 513 RNVERQLSTLQAQLSDMKKKLEED 536
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
793-1014 |
9.28e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 9.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 793 QLDEAHKNASQLEAKVGDMQfKIQKLEQELSVKQWNVERLQGELSAAhkDDEYVRKKLKLLEDEKVILRHKYSENQ---D 869
Cdd:COG4913 236 DLERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEaelE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 870 EFQNKYDELEAQYNELTEKYKvTQGLA--KSLQTQLACAQVEaeewRQQVEKIRTDLEEQIRILKNALDNSEAErkiced 947
Cdd:COG4913 313 RLEARLDALREELDELEAQIR-GNGGDrlEQLEREIERLERE----LEERERRRARLEALLAALGLPLPASAEE------ 381
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 221458389 948 kwqkeFEMLRTHNREREEtlmtdcewQLRQMQRQCKDKTDKSNYERKQATAKAEELELELQS-RRRES 1014
Cdd:COG4913 382 -----FAALRAEAAALLE--------ALEEELEALEEALAEAEAALRDLRRELRELEAEIASlERRKS 436
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
732-1142 |
9.97e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 9.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 732 SRSNSPKQRSRDDSCLgQDMTPCIEIVEDGSVLNKPVRQESPLDNQELRKELKQQKarFASQLDEAHKNAS----QLEAK 807
Cdd:TIGR01612 1386 DKSEKLIKKIKDDINL-EECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDT--YFKNADENNENVLllfkNIEMA 1462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 808 VGDMQF--KIQKlEQELSVKQWNVERLQGELSAAHKDDEYVRKKLKLLEDEKvILRHKYSENQDEFQNKYDELEAQyNEL 885
Cdd:TIGR01612 1463 DNKSQHilKIKK-DNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNK-ELFEQYKKDVTELLNKYSALAIK-NKF 1539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 886 TEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRtdlEEQIRILKNALDNSEAERKICEDKwqkefemLRTHNREREE 965
Cdd:TIGR01612 1540 AKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIK---KEKFRIEDDAAKNDKSNKAAIDIQ-------LSLENFENKF 1609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 966 TLMTDcewqLRQMQRQCKDKTDksNYERKQATAKAEELELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRI 1045
Cdd:TIGR01612 1610 LKISD----IKKKINDCLKETE--SIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEI 1683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1046 ENLKGDLQSANENLEAQIeaVHKIKyqcDNAIYDKErqmiyKIDEVRNEAAAFWENKLYTEMtrlTNELESVYVDERREA 1125
Cdd:TIGR01612 1684 EKIEIDVDQHKKNYEIGI--IEKIK---EIAIANKE-----EIESIKELIEPTIENLISSFN---TNDLEGIDPNEKLEE 1750
|
410
....*....|....*..
gi 221458389 1126 LDKLQNEHIEELRALTN 1142
Cdd:TIGR01612 1751 YNTEIGDIYEEFIELYN 1767
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1119-1301 |
1.17e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1119 VDERREALDKLQNEHIEELRALTNRYTANE---EELRSEIDDLHESLEQKKQDFLSLRERSDNalLQTRMHLDKADREYQ 1195
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEarlEAAKTELEDLEKEIKRLELEIEEVEARIKK--YEEQLGNVRNNKEYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1196 nAMCRE----EDRRVELEERLQkefeaekaemeeKFRERLGQVKEEFAKelqlsTQEMVESHRKELDSQKAKLQAEKEEA 1271
Cdd:COG1579 93 -ALQKEieslKRRISDLEDEIL------------ELMERIEELEEELAE-----LEAELAELEAELEEKKAELDEELAEL 154
|
170 180 190
....*....|....*....|....*....|
gi 221458389 1272 LQELvERHRAKMAAADERIKfEEMRMRYER 1301
Cdd:COG1579 155 EAEL-EELEAEREELAAKIP-PELLALYER 182
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
814-1035 |
1.23e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 814 KIQKLEQELSVKQWNVERLQGELSAAhkddeyvrKKLKLLEDEKviLRHKYSENQDEFQNKYDELEAQYNELtekykvtQ 893
Cdd:pfam17380 376 RMRELERLQMERQQKNERVRQELEAA--------RKVKILEEER--QRKIQQQKVEMEQIRAEQEEARQREV-------R 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 894 GLAKSLQTQLACAQVEAEEWRQQVEKIRTDLEEQIRiLKNALDNSEAERKICEDKWQKefeMLRTHNREREETLMTdcEW 973
Cdd:pfam17380 439 RLEEERAREMERVRLEEQERQQQVERLRQQEEERKR-KKLELEKEKRDRKRAEEQRRK---ILEKELEERKQAMIE--EE 512
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 221458389 974 QLRQMQRQCKDKTDKSNYERKQATAKAEE--LELELQSRRRESEMLRTCQAQVNSLRGVVSEQE 1035
Cdd:pfam17380 513 RKRKLLEKEMEERQKAIYEEERRREAEEErrKQQEMEERRRIQEQMRKATEERSRLEAMERERE 576
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
974-1249 |
1.73e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.21 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 974 QLRQMQRQCKDKTDKSNYERKQATAKAEELELELQSRRRE----SEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIENLK 1049
Cdd:COG1340 19 ELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEaqelREKRDELNEKVKELKEERDELNEKLNELREELDELR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1050 GDLQSANEN------LEAQIEAVHKiKYQCDNAIYDKERQMIYKIDEVRNEA-AAFWENKLYTEMTRLTNELESVYvDER 1122
Cdd:COG1340 99 KELAELNKAggsidkLRKEIERLEW-RQQTEVLSPEEEKELVEKIKELEKELeKAKKALEKNEKLKELRAELKELR-KEA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1123 REAldklqNEHIEELRALTNRYTANEEELRSEIDDLHESLEQKKQDFLSLRERsdnallqtrmhLDKADREYQNAMCREE 1202
Cdd:COG1340 177 EEI-----HKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEK-----------ADELHEEIIELQKELR 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 221458389 1203 DRRVELEERLQKEFEAEKAEMEEKFRERLGQVKEEFAKELQLSTQEM 1249
Cdd:COG1340 241 ELRKELKKLRKKQRALKREKEKEELEEKAEEIFEKLKKGEKLTTEEL 287
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
781-943 |
2.22e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 781 KELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEYVRKKLKLLedekviL 860
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER------A 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 861 RHKY--------------SENQDEFQNKYDELEA---QYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIRTD 923
Cdd:COG3883 93 RALYrsggsvsyldvllgSESFSDFLDRLSALSKiadADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAE 172
|
170 180
....*....|....*....|
gi 221458389 924 LEEQIRILKNALDNSEAERK 943
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEA 192
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
775-1010 |
2.32e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 775 DNQELRKELKQQKARF-ASQLDEAHKNASQLEAKVgdMQFKIQK----LEQELSVKQWNVERLQGELSAAHKDDEYVRKK 849
Cdd:COG3206 164 QNLELRREEARKALEFlEEQLPELRKELEEAEAAL--EEFRQKNglvdLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 850 LKLLE-----DEKVILRHKYSENQDEFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQveaEEWRQQVEKIRTDL 924
Cdd:COG3206 242 LAALRaqlgsGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALR---AQLQQEAQRILASL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 925 EEQIRILKNALDNSEAERKICEDKwqkefeMLRTHNREREetlmtdcewqLRQMQRQCkdKTDKSNYErkQATAKAEELE 1004
Cdd:COG3206 319 EAELEALQAREASLQAQLAQLEAR------LAELPELEAE----------LRRLEREV--EVARELYE--SLLQRLEEAR 378
|
....*.
gi 221458389 1005 LELQSR 1010
Cdd:COG3206 379 LAEALT 384
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
775-941 |
2.41e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 775 DNQELRKELKQQKARFASQLDEAHKNASQLEAKVGDMQfKIQKLEQELSVKQW---NVERLQGELSAAHKDDEYVRK--- 848
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ-ERREALQRLAEYSWdeiDVASAEREIAELEAELERLDAssd 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 849 KLKLLEDEKVILRHKYSENQDEfqnkYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEW--------------R 914
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEE----LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElralleerfaaalgD 761
|
170 180
....*....|....*....|....*..
gi 221458389 915 QQVEKIRTDLEEQIRILKNALDNSEAE 941
Cdd:COG4913 762 AVERELRENLEERIDALRARLNRAEEE 788
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
884-1264 |
3.11e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 884 ELTEKYKVTQGLAKSLQTQLACAQVEAEEwrQQVEKIRTDLEEQIRILKNALDNSEAERKICEDKWQKEFEMLRTHNRER 963
Cdd:pfam02463 657 GLAEKSEVKASLSELTKELLEIQELQEKA--ESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKI 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 964 EETLMtdcewQLRQMQRQCKDKTDKSNYER--KQATAKAEELELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTL 1041
Cdd:pfam02463 735 NEELK-----LLKQKIDEEEEEEEKSRLKKeeKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEE 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1042 MDRIENLKGDLQSANENLEAQIEAVHKIKYQCDNAIYDKERQMIYKIDEVRNEAAAFWENKLYTEMTRLTNELESVyvDE 1121
Cdd:pfam02463 810 LKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLK--DE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1122 RREALDKLQNEHIEELRALTNRYTANEEELRSEIDDLHESLEQKKQDFLSLRERSDNALLQTRMHLDKAD---REYQNAM 1198
Cdd:pfam02463 888 LESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEeeeRNKRLLL 967
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 221458389 1199 CREEDRRVELEERLQKEFEAEKAEMEEKFRERLGQVKEEFAKELQLSTQEMVESHRKELDSQKAKL 1264
Cdd:pfam02463 968 AKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGW 1033
|
|
| Tropomyosin |
pfam00261 |
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 ... |
777-1008 |
3.13e-03 |
|
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites. The protein is best known for its role in regulating the interaction between actin and myosin in muscle contraction, but is also involved in the organization and dynamics of the cytoskeleton in non-muscle cells. There are multiple cell-specific isoforms, expressed by alternative promoters and alternative RNA processing of at least four genes. Muscle isoforms of tropomyosin are characterized by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region.
Pssm-ID: 459736 [Multi-domain] Cd Length: 235 Bit Score: 40.78 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 777 QELRKELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEYVRKKLKLLEDe 856
Cdd:pfam00261 7 KEELDEAEERLKEAMKKLEEAEKRAEKAEAEVAALNRRIQLLEEELERTEERLAEALEKLEEAEKAADESERGRKVLEN- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 857 kvilrhkySENQDEfqNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWRQQVEKIR---TDLEEQIRILKN 933
Cdd:pfam00261 86 --------RALKDE--EKMEILEAQLKEAKEIAEEADRKYEEVARKLVVVEGDLERAEERAELAEskiVELEEELKVVGN 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 221458389 934 ALDNSEA-ERKIC--EDKWQKEFEMLRTHNRErEETLMTDCEWQLRQMQRQCKDKTDKSNYERKQATAKAEELELELQ 1008
Cdd:pfam00261 156 NLKSLEAsEEKASerEDKYEEQIRFLTEKLKE-AETRAEFAERSVQKLEKEVDRLEDELEAEKEKYKAISEELDQTLA 232
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
994-1193 |
3.41e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 994 KQATAKAEELELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLMDRIenlkGDLQSANENLEAQIEAVhkiKYQC 1073
Cdd:COG4913 664 ASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEI----GRLEKELEQAEEELDEL---QDRL 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1074 DNAIYDKERQMIYKIDEVRNEAAAfwENKLYTEMTRLTNELESVyvderREALDKLQNEHIEELRALTNRYTANEEELRS 1153
Cdd:COG4913 737 EAAEDLARLELRALLEERFAAALG--DAVERELRENLEERIDAL-----RARLNRAEEELERAMRAFNREWPAETADLDA 809
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 221458389 1154 EIDDLHE-----------SLEQKKQDFL-SLRERSDNALLQTRMHLDKADRE 1193
Cdd:COG4913 810 DLESLPEylalldrleedGLPEYEERFKeLLNENSIEFVADLLSKLRRAIRE 861
|
|
| MAP65_ASE1 |
pfam03999 |
Microtubule associated protein (MAP65/ASE1 family); |
760-1027 |
4.26e-03 |
|
Microtubule associated protein (MAP65/ASE1 family);
Pssm-ID: 427641 [Multi-domain] Cd Length: 477 Bit Score: 41.53 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 760 DGSVLNKPVRQESPLDNQELRKELKQQKARFASQLDEAHKNASQLEAKVGDMQFKIQKLEQELsvkqwnverlqGELSAA 839
Cdd:pfam03999 65 CLYMRNRLLHEERDPFEPKKGMSLLQKEKKLDTQLEHLRKEKAPRLAEIKELLEQLQQLCEEL-----------GEEPLP 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 840 HKDD--------EYVRKKLKLLEDEKVILRHKYSENQDEFQNKYDELE------AQYNELTEKyKVTQGLAKSLQTQLAC 905
Cdd:pfam03999 134 LLIDplpsleelESFRKHLENLRNEKERRLEEVNELKKQIKLLMEELDlvpgtdFEEDLLCES-EDNFCLSRENIDKLRK 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 906 AQVEAEEWRQQVEKIRTDLEEQIRILKNALDNS--EAERKICE---------DKWQKEFEMLRTHNREREETLMTDCEWQ 974
Cdd:pfam03999 213 LIKQLEEQKAEREEKIDDLREKILELWNRLQVPqeEQESFVREnnslsqdtiDALREELQRLEELKKKNIKKLIEDLRVE 292
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 221458389 975 LRQMQrqckDKTDKSNYERKQATAKAEELelelqsrrRESEMLRTCQAQVNSL 1027
Cdd:pfam03999 293 IEELW----DKLFYSTEQRKRFIPFFEEL--------YTEDLLELHELELKRL 333
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
778-1017 |
5.17e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.26 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 778 ELRKELKQQKARFAsQLDEAHKNASQLEAKVGDMQFKIQKLE---QELSVKQWNVERLQGELSAAHKDD----------E 844
Cdd:pfam05557 201 ELEKELERLREHNK-HLNENIENKLLLKEEVEDLKRKLEREEkyrEEAATLELEKEKLEQELQSWVKLAqdtglnlrspE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 845 YVRKKLK-LLEDEKVILRHKYSENQD---------EFQNKYDELEAQYNELTEKYKVTQGLAKSLQTQLACAQVEAEEWR 914
Cdd:pfam05557 280 DLSRRIEqLQQREIVLKEENSSLTSSarqlekarrELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYR 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 915 QQVEKIRTDLEEQIRILKNALDNSEAERKIceDKWQKEFEMLRTHNREREETL--------MTDCEWQLRQMQRQCKDKT 986
Cdd:pfam05557 360 AILESYDKELTMSNYSPQLLERIEEAEDMT--QKMQAHNEEMEAQLSVAEEELggykqqaqTLERELQALRQQESLADPS 437
|
250 260 270
....*....|....*....|....*....|.
gi 221458389 987 dKSNYERKQATAKAEELELELQSRRRESEML 1017
Cdd:pfam05557 438 -YSKEEVDSLRRKLETLELERQRLREQKNEL 467
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
847-1330 |
5.48e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 5.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 847 RKKLKLLEDEKVilrHKYSENQDEFQNKYDELEAQYNELTEKYkvtqglakSLQTQLACAQVEAEEWRQQV-EKIRTDLE 925
Cdd:TIGR00618 164 EKKELLMNLFPL---DQYTQLALMEFAKKKSLHGKAELLTLRS--------QLLTLCTPCMPDTYHERKQVlEKELKHLR 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 926 EQIRILKNALDNSEAERKICE--DKWQKEFEMLRTHNREREeTLMTDCEWQLRQMQRQCKDKTDKSNYER-KQATAKAEE 1002
Cdd:TIGR00618 233 EALQQTQQSHAYLTQKREAQEeqLKKQQLLKQLRARIEELR-AQEAVLEETQERINRARKAAPLAAHIKAvTQIEQQAQR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1003 LELELQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLM---DRIENLKGDLQSANENLEAQIEAVHKIK--YQCDNAI 1077
Cdd:TIGR00618 312 IHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHsqeIHIRDAHEVATSIREISCQQHTLTQHIHtlQQQKTTL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1078 YDKERQMIYKIDEVRNEAA-------AFWENKLYTEMTRLTNELESVYVDERREALDKLQNEHIEELRALTN--RYTANE 1148
Cdd:TIGR00618 392 TQKLQSLCKELDILQREQAtidtrtsAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQEsaQSLKER 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1149 EELRSEIDDLHESLEQKKQdflsLRERSDNALLQTRMHLDKADREY-------------QNAMCREEDRRVELEERLQKE 1215
Cdd:TIGR00618 472 EQQLQTKEQIHLQETRKKA----VVLARLLELQEEPCPLCGSCIHPnparqdidnpgplTRRMQRGEQTYAQLETSEEDV 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1216 FEAEKAEmeekfRERLGQVKEEfAKELQLSTQemveshrkELDSQKAKLQAEKEEALQELVE-RHRAKMAAADERIKFEE 1294
Cdd:TIGR00618 548 YHQLTSE-----RKQRASLKEQ-MQEIQQSFS--------ILTQCDNRSKEDIPNLQNITVRlQDLTEKLSEAEDMLACE 613
|
490 500 510
....*....|....*....|....*....|....*.
gi 221458389 1295 MRMRYERRDPRAEDLREITELRTRCESQERDLYVLT 1330
Cdd:TIGR00618 614 QHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALH 649
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
722-1206 |
5.87e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.43 E-value: 5.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 722 HFIPIHVEGRSRSNSPKQRSRDDSCLGQDMTPcieiveDGSVLNKPVRQESPLDNQELRK--ELKQQKARFASQLDEAHK 799
Cdd:PLN02939 29 RRLAVSCRARRRGFSSQQKKKRGKNIAPKQRS------SNSKLQSNTDENGQLENTSLRTvmELPQKSTSSDDDHNRASM 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 800 NASQLEAKVGDMQFKIQKLEQELSVKQwnVERLQGELSAAHKDDEYVRK-KLKLLEDEKVILRHKysenqDEFQNKYDEL 878
Cdd:PLN02939 103 QRDEAIAAIDNEQQTNSKDGEQLSDFQ--LEDLVGMIQNAEKNILLLNQaRLQALEDLEKILTEK-----EALQGKINIL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 879 EAQYNELTEKYKVTqglakslqtqlacAQveaeewrqqvEKIRTD-LEEQIRILKNALDNSEAERKICEDKWQKEFEMLR 957
Cdd:PLN02939 176 EMRLSETDARIKLA-------------AQ----------EKIHVEiLEEQLEKLRNELLIRGATEGLCVHSLSKELDVLK 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 958 THNRereeTLMTDCEWqLRQMQRQCKDkTDKSNY--ERKQATAKAEELELELQSRRRESEMLrtcqaQVNSLRgvvseqe 1035
Cdd:PLN02939 233 EENM----LLKDDIQF-LKAELIEVAE-TEERVFklEKERSLLDASLRELESKFIVAQEDVS-----KLSPLQ------- 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1036 qsIQTLMDRIENLKGDLQSANENLEAQIeavhkikyqcdnAIYDKERQMIYKIDEVRNEAAAFWENKLYTEMTRLTNElE 1115
Cdd:PLN02939 295 --YDCWWEKVENLQDLLDRATNQVEKAA------------LVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQ-K 359
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1116 SVYVDERREALDKLQNEHIEELRALTNRYTANEEELR--SEIDDLHESLEQKKQDFLS-LRERSDNALLQTRMHLDKAD- 1191
Cdd:PLN02939 360 LKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKeeSKKRSLEHPADDMPSEFWSrILLLIDGWLLEKKISNNDAKl 439
|
490
....*....|....*.
gi 221458389 1192 -REyqnaMCREEDRRV 1206
Cdd:PLN02939 440 lRE----MVWKRDGRI 451
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
989-1291 |
5.89e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 40.90 E-value: 5.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 989 SNYERKQATAKAEELELELQSRRRESEMLRTCQAQVNSLR-GVVSEQEQSIQTLMDRIEN-LKGDLQSANE----NLEAQ 1062
Cdd:pfam09731 73 SAVTGESKEPKEEKKQVKIPRQSGVSSEVAEEEKEATKDAaEAKAQLPKSEQEKEKALEEvLKEAISKAESatavAKEAK 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1063 IEAVHKIKYQCD---NAIYDKERQMIYKIDEVRNEAAAFWENKLYTEMTRLTNELESV--YVDERREALDKLQNEHIEEL 1137
Cdd:pfam09731 153 DDAIQAVKAHTDslkEASDTAEISREKATDSALQKAEALAEKLKEVINLAKQSEEEAAppLLDAAPETPPKLPEHLDNVE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1138 RALTNrytanEEELRSEIDDLHESLEQKKQDF----------LSLRERSDNALLQTRMH--LDKADREYQNAMCREEDRR 1205
Cdd:pfam09731 233 EKVEK-----AQSLAKLVDQYKELVASERIVFqqelvsifpdIIPVLKEDNLLSNDDLNslIAHAHREIDQLSKKLAELK 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1206 VELEERLQKEFEAEKAEMEEKFRE-----------RLGQVKEEFAKELQLSTQEMVESHRKELD---------------S 1259
Cdd:pfam09731 308 KREEKHIERALEKQKEELDKLAEElsarleevraaDEAQLRLEFEREREEIRESYEEKLRTELErqaeaheehlkdvlvE 387
|
330 340 350
....*....|....*....|....*....|....*.
gi 221458389 1260 QKAKLQAEKEEALQELVERHRA----KMAAADERIK 1291
Cdd:pfam09731 388 QEIELQREFLQDIKEKVEEERAgrllKLNELLANLK 423
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1035-1249 |
7.36e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1035 EQSIQTLMDRIENLKGdLQSANENLEAQIEAVHKIKYQCDNaiYDKERQMIYKIDEVRnEAAAFWENK-----LYTEMTR 1109
Cdd:COG4913 224 FEAADALVEHFDDLER-AHEALEDAREQIELLEPIRELAER--YAAARERLAELEYLR-AALRLWFAQrrlelLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1110 LTNELESVyvDERREALDKLQNEHIEELRALTNRYTAN----EEELRSEIDDLHESLEQKKQ------------------ 1167
Cdd:COG4913 300 LRAELARL--EAELERLEARLDALREELDELEAQIRGNggdrLEQLEREIERLERELEERERrrarleallaalglplpa 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1168 ---DFLSLRERSDNALLQtrmhLDKADREYQNAMCREEDRRVELEERLQKEFEAEKAEMEEKFR--ERLGQVKEEFAKEL 1242
Cdd:COG4913 378 saeEFAALRAEAAALLEA----LEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNipARLLALRDALAEAL 453
|
....*..
gi 221458389 1243 QLSTQEM 1249
Cdd:COG4913 454 GLDEAEL 460
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
805-1174 |
8.16e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 8.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 805 EAKVGDMQFKIQKLEQELSVKQWNVERLQGELSAAHKDDEYVRKKLKLLEDEKVILRHKYSENQDefqnKYDELEAQYNE 884
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKD----KINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 885 LTEKYKVTQGLAKSLQTQLAcaqvEAEEWRQQVEKIRTDLEEQIRILKNALDNSEAerKICEDKWQKEfemlrthNRERE 964
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELN----KLEKQKKENKKNIDKFLTEIKKKEKELEKLNN--KYNDLKKQKE-------ELENE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 965 ETLMtdcewqlrqmqrqckdKTDKSNYERKQATAKAEELELE--LQSRRRESEMLRTCQAQVNSLRGVVSEQEQSIQTLM 1042
Cdd:TIGR04523 175 LNLL----------------EKEKLNIQKNIDKIKNKLLKLEllLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQ 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221458389 1043 DRIENLKGDLQSANENLEAQIEAVHKIKYQCDNAIYDKERQMIyKIDEVRNEAaafweNKLYTEMTRLTNELESVYVDER 1122
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNK-KIKELEKQL-----NQLKSEISDLNNQKEQDWNKEL 312
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 221458389 1123 REALDKLQNehieELRALTNRYTANEE---ELRSEIDDLHESLEQKKQDFLSLRE 1174
Cdd:TIGR04523 313 KSELKNQEK----KLEEIQNQISQNNKiisQLNEQISQLKKELTNSESENSEKQR 363
|
|
| |
