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Conserved domains on  [gi|45553139|ref|NP_996097|]
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aaRS-interacting multifunctional protein 2, isoform B [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Thioredoxin_16 pfam18569
Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl ...
102-193 1.04e-32

Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl tRNA synthetase complex interacting multifunctional protein 2). Aimp2 is a component of human multi-tRNA synthetase complex (MSC). MSC is a macromolecular protein complex consisting of nine different ARSs and three ARS-interacting multifunctional proteins (AIMPs).


:

Pssm-ID: 436585  Cd Length: 93  Bit Score: 115.87  E-value: 1.04e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45553139   102 PLQDVVINGHPNFIPYALLALKNAWRNLYTIDVKTFTHSTMADIGPAA-REFEANLAKVPvnPALPKISVTLIWKNCEH- 179
Cdd:pfam18569   2 ALHDIVINANPSNPPYSLLVLHKLLKDRYKVLVKVHTHSSVSSVPENLlKCFGENTSKDS--RNDYQIGITLIWKDVPKg 79
                          90
                  ....*....|....
gi 45553139   180 TEMISSPTMYVPIY 193
Cdd:pfam18569  80 PEMVVSPTSQCPIE 93
GST_C_family cd00299
C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione ...
242-294 2.89e-08

C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxins, stringent starvation protein A, and aminoacyl-tRNA synthetases.


:

Pssm-ID: 198286 [Multi-domain]  Cd Length: 100  Bit Score: 50.58  E-value: 2.89e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 45553139 242 AMVRLLDKRLQKQQYFGGSQMSVADVGVYSSLIRMPAVTE----KDLTPALVAWRKR 294
Cdd:cd00299  43 ALLAALEQLLAGRPYLAGDQFSLADVALAPVLARLEALGPyydlLDEYPRLKAWYDR 99
 
Name Accession Description Interval E-value
Thioredoxin_16 pfam18569
Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl ...
102-193 1.04e-32

Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl tRNA synthetase complex interacting multifunctional protein 2). Aimp2 is a component of human multi-tRNA synthetase complex (MSC). MSC is a macromolecular protein complex consisting of nine different ARSs and three ARS-interacting multifunctional proteins (AIMPs).


Pssm-ID: 436585  Cd Length: 93  Bit Score: 115.87  E-value: 1.04e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45553139   102 PLQDVVINGHPNFIPYALLALKNAWRNLYTIDVKTFTHSTMADIGPAA-REFEANLAKVPvnPALPKISVTLIWKNCEH- 179
Cdd:pfam18569   2 ALHDIVINANPSNPPYSLLVLHKLLKDRYKVLVKVHTHSSVSSVPENLlKCFGENTSKDS--RNDYQIGITLIWKDVPKg 79
                          90
                  ....*....|....
gi 45553139   180 TEMISSPTMYVPIY 193
Cdd:pfam18569  80 PEMVVSPTSQCPIE 93
GST_C_family cd00299
C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione ...
242-294 2.89e-08

C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxins, stringent starvation protein A, and aminoacyl-tRNA synthetases.


Pssm-ID: 198286 [Multi-domain]  Cd Length: 100  Bit Score: 50.58  E-value: 2.89e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 45553139 242 AMVRLLDKRLQKQQYFGGSQMSVADVGVYSSLIRMPAVTE----KDLTPALVAWRKR 294
Cdd:cd00299  43 ALLAALEQLLAGRPYLAGDQFSLADVALAPVLARLEALGPyydlLDEYPRLKAWYDR 99
GST_C_2 pfam13410
Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.
241-294 2.77e-05

Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.


Pssm-ID: 433185 [Multi-domain]  Cd Length: 67  Bit Score: 41.15  E-value: 2.77e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 45553139   241 VAMVRLLDKRLQKQQYFGGSQMSVADVGVYSSLIRM----PAVTEKDLTPALVAWRKR 294
Cdd:pfam13410  10 RAALDALEARLADGPGLLGDRPTLADIALAPVLARLdaayPGLDLREGYPRLRAWLER 67
 
Name Accession Description Interval E-value
Thioredoxin_16 pfam18569
Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl ...
102-193 1.04e-32

Thioredoxin-like domain; This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl tRNA synthetase complex interacting multifunctional protein 2). Aimp2 is a component of human multi-tRNA synthetase complex (MSC). MSC is a macromolecular protein complex consisting of nine different ARSs and three ARS-interacting multifunctional proteins (AIMPs).


Pssm-ID: 436585  Cd Length: 93  Bit Score: 115.87  E-value: 1.04e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45553139   102 PLQDVVINGHPNFIPYALLALKNAWRNLYTIDVKTFTHSTMADIGPAA-REFEANLAKVPvnPALPKISVTLIWKNCEH- 179
Cdd:pfam18569   2 ALHDIVINANPSNPPYSLLVLHKLLKDRYKVLVKVHTHSSVSSVPENLlKCFGENTSKDS--RNDYQIGITLIWKDVPKg 79
                          90
                  ....*....|....
gi 45553139   180 TEMISSPTMYVPIY 193
Cdd:pfam18569  80 PEMVVSPTSQCPIE 93
GST_C_family cd00299
C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione ...
242-294 2.89e-08

C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxins, stringent starvation protein A, and aminoacyl-tRNA synthetases.


Pssm-ID: 198286 [Multi-domain]  Cd Length: 100  Bit Score: 50.58  E-value: 2.89e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 45553139 242 AMVRLLDKRLQKQQYFGGSQMSVADVGVYSSLIRMPAVTE----KDLTPALVAWRKR 294
Cdd:cd00299  43 ALLAALEQLLAGRPYLAGDQFSLADVALAPVLARLEALGPyydlLDEYPRLKAWYDR 99
GST_C_2 pfam13410
Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.
241-294 2.77e-05

Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.


Pssm-ID: 433185 [Multi-domain]  Cd Length: 67  Bit Score: 41.15  E-value: 2.77e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 45553139   241 VAMVRLLDKRLQKQQYFGGSQMSVADVGVYSSLIRM----PAVTEKDLTPALVAWRKR 294
Cdd:pfam13410  10 RAALDALEARLADGPGLLGDRPTLADIALAPVLARLdaayPGLDLREGYPRLRAWLER 67
GST_C_Delta_Epsilon cd03177
C-terminal, alpha helical domain of Class Delta and Epsilon Glutathione S-transferases; ...
246-296 4.16e-04

C-terminal, alpha helical domain of Class Delta and Epsilon Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.


Pssm-ID: 198287 [Multi-domain]  Cd Length: 117  Bit Score: 39.44  E-value: 4.16e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 45553139 246 LLDKRLQKQQYFGGSQMSVADVGVYSSLIRMPAVtEKDLT--PALVAWRKRAK 296
Cdd:cd03177  49 FLETFLEGSDYVAGDQLTIADLSLVATVSTLEVV-GFDLSkyPNVAAWYERLK 100
GST_C_AIMP2 cd03200
Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase ...
200-275 1.62e-03

Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 2; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein (AIMP) 2 subfamily; AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex that functions as a molecular hub to coordinate protein synthesis. There are three AIMPs, named AIMP1-3, which play diverse regulatory roles. AIMP2, also called p38 or JTV-1, contains a C-terminal domain with similarity to the C-terminal alpha helical domain of GSTs. It plays an important role in the control of cell fate via antiproliferative (by enhancing the TGF-beta signal) and proapoptotic (activation of p53 and TNF-alpha) activities. Its roles in the control of cell proliferation and death suggest that it is a potent tumor suppressor. AIMP2 heterozygous mice with lower than normal expression of AIMP2 show high susceptibility to tumorigenesis. AIMP2 is also a substrate of Parkin, an E3 ubiquitin ligase that is involved in the ubiquitylation and proteasomal degradation of its substrates. Mutations in the Parkin gene is found in 50% of patients with autosomal-recessive early-onset parkinsonism. The accumulation of AIMP2, due to impaired Parkin function, may play a role in the pathogenesis of Parkinson's disease.


Pssm-ID: 198309 [Multi-domain]  Cd Length: 96  Bit Score: 37.11  E-value: 1.62e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45553139 200 RYLGRVGPAEYRyeGSPLCNEIDLVLDICYQLLRCNTHKTQVAMVRLLDKRLQKQQYFGGSQMSVADVGVYSSLIR 275
Cdd:cd03200   2 RFLFRLLGDESD--DPVNATLIDSWVDTAIFQLLEGSSKEKAAVLRALNSALGRSPWLVGSEPTVADIALWSAVLQ 75
GST_C_Omega_like cd03190
C-terminal, alpha helical domain of Class Omega-like Glutathione S-transferases; Glutathione ...
207-294 3.16e-03

C-terminal, alpha helical domain of Class Omega-like Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae Omega-like subfamily; composed of three Saccharomyces cerevisiae GST omega-like (Gto) proteins, Gto1p, Gto2p (also known as Extracellular mutant protein 4 or ECM4p), and Gto3p, as well as similar uncharacterized proteins from fungi and bacteria. The three Saccharomyces cerevisiae Gto proteins are omega-class GSTs with low or no GST activity against standard substrates, but have glutaredoxin/thiol oxidoreductase and dehydroascorbate reductase activity through a single cysteine residue in the active site. Gto1p is located in the peroxisomes while Gto2p and Gto3p are cytosolic. The gene encoding Gto2p, called ECM4, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.


Pssm-ID: 198299 [Multi-domain]  Cd Length: 142  Bit Score: 37.17  E-value: 3.16e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45553139 207 PAEYRyegsplcNEIDLVLDICYQLL-----RCNTHKTQVA----------MVRLLDKRLQKQQYFGGSQMSVADVGVYS 271
Cdd:cd03190   1 PEELR-------KEIDELNEWIYDNInngvyKAGFATTQEAydkavkelfeALDKLEKRLSKQPYLLGDRLTEADIRLFT 73
                        90       100       110
                ....*....|....*....|....*....|..
gi 45553139 272 SLIRMPAV-------TEKDLT--PALVAWRKR 294
Cdd:cd03190  74 TLIRFDPVyhqhfkcNLKTIRdyPNLWRYLRR 105
GST_C_GTT2_like cd03182
C-terminal, alpha helical domain of GTT2-like Glutathione S-transferases; Glutathione ...
245-294 4.19e-03

C-terminal, alpha helical domain of GTT2-like Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the Saccharomyces cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.


Pssm-ID: 198291 [Multi-domain]  Cd Length: 116  Bit Score: 36.53  E-value: 4.19e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 45553139 245 RLLDKRLQKQQYFGGSQMSVADVGVYSSLIRMPAVteKDLTP----ALVAWRKR 294
Cdd:cd03182  58 PVLDKRLAESPYVAGDRFSIADITAFVALDFAKNL--KLPVPeeltALRRWYER 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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