NCBI Conserved Domain Search

Conserved domains on [gi|42573355|ref|NP_974774|]

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nuclear factor Y, subunit A1 [Arabidopsis thaliana]

Protein Classification

CCAAT-binding transcription factor( domain architecture ID 10649995)

CCAAT-binding transcription factor similar to nuclear transcription factor Y subunit alpha, which is a component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes

Gene Ontology: GO:0003700|GO:0006355|GO:0016602

PubMed: 1549471

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

CBF

smart00521

CCAAT-Binding transcription Factor;

168-229

8.70e-32

CCAAT-Binding transcription Factor;

Pssm-ID: 128795 [Multi-domain] Cd Length: 62 Bit Score: 111.74 E-value: 8.70e-32

                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42573355    168 MAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKK 229
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62

Name

Accession

Description

Interval

E-value

CBF

smart00521

CCAAT-Binding transcription Factor;

168-229

8.70e-32

CCAAT-Binding transcription Factor;

Pssm-ID: 128795 [Multi-domain] Cd Length: 62 Bit Score: 111.74 E-value: 8.70e-32

                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42573355    168 MAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKK 229
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62

CBFB_NFYA

pfam02045

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

171-226

2.11e-31

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

Pssm-ID: 396572 Cd Length: 56 Bit Score: 110.74 E-value: 2.11e-31

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 42573355   171 EPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF 226
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56

HAP2

COG5224

CCAAT-binding factor, subunit B [Transcription];

169-270

6.59e-15

CCAAT-binding factor, subunit B [Transcription];

Pssm-ID: 227549 [Multi-domain] Cd Length: 248 Bit Score: 72.14 E-value: 6.59e-15

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573355 169 AQEPVYVNAKQYEGILRRRKARAKaeLERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAGEDAGgrdrergsa 248
Cdd:COG5224 157 SFQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTG--------- 225

                        90       100
                ....*....|....*....|..
gi 42573355 249 tNSSGSEQVETDSNETLNSSGA 270
Cdd:COG5224 226 -NTQDSMIIGQQTYPSHGSSGT 246

Name

Accession

Description

Interval

E-value

CBF

smart00521

CCAAT-Binding transcription Factor;

168-229

8.70e-32

CCAAT-Binding transcription Factor;

Pssm-ID: 128795 [Multi-domain] Cd Length: 62 Bit Score: 111.74 E-value: 8.70e-32

                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42573355    168 MAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKK 229
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62

CBFB_NFYA

pfam02045

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

171-226

2.11e-31

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;

Pssm-ID: 396572 Cd Length: 56 Bit Score: 110.74 E-value: 2.11e-31

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 42573355   171 EPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF 226
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56

HAP2

COG5224

CCAAT-binding factor, subunit B [Transcription];

169-270

6.59e-15

CCAAT-binding factor, subunit B [Transcription];

Pssm-ID: 227549 [Multi-domain] Cd Length: 248 Bit Score: 72.14 E-value: 6.59e-15

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573355 169 AQEPVYVNAKQYEGILRRRKARAKaeLERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAGEDAGgrdrergsa 248
Cdd:COG5224 157 SFQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTG--------- 225

                        90       100
                ....*....|....*....|..
gi 42573355 249 tNSSGSEQVETDSNETLNSSGA 270
Cdd:COG5224 226 -NTQDSMIIGQQTYPSHGSSGT 246

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01