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Conserved domains on  [gi|42573061|ref|NP_974627|]
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intracellular protein transporter [Arabidopsis thaliana]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
EnvC super family cl34844
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
163-320 1.44e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG4942:

Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.38  E-value: 1.44e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061 163 SESGSDIFSKREVIQKLRQQLKRRDDMIVEMQEQILELQNSLNAqmghsshIQTQLDATNRDLFESEREVQRLRKAIADH 242
Cdd:COG4942  37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA-------LEAELAELEKEIAELRAELEAQKEELAEL 109
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061 243 cVGHTGSNGWSGDVNSENNYESPENGIR-----------DGERIEMLRKEVGELKEVIDgkeyLLRSYKEQKTELLQKVK 311
Cdd:COG4942 110 -LRALYRLGRQPPLALLLSPEDFLDAVRrlqylkylapaRREQAEELRADLAELAALRA----ELEAERAELEALLAELE 184

                ....*....
gi 42573061 312 ELQQRLDSQ 320
Cdd:COG4942 185 EERAALEAL 193
 
Name Accession Description Interval E-value
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
163-320 1.44e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.38  E-value: 1.44e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061 163 SESGSDIFSKREVIQKLRQQLKRRDDMIVEMQEQILELQNSLNAqmghsshIQTQLDATNRDLFESEREVQRLRKAIADH 242
Cdd:COG4942  37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA-------LEAELAELEKEIAELRAELEAQKEELAEL 109
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061 243 cVGHTGSNGWSGDVNSENNYESPENGIR-----------DGERIEMLRKEVGELKEVIDgkeyLLRSYKEQKTELLQKVK 311
Cdd:COG4942 110 -LRALYRLGRQPPLALLLSPEDFLDAVRrlqylkylapaRREQAEELRADLAELAALRA----ELEAERAELEALLAELE 184

                ....*....
gi 42573061 312 ELQQRLDSQ 320
Cdd:COG4942 185 EERAALEAL 193
PRK09039 PRK09039
peptidoglycan -binding protein;
179-315 3.14e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 41.88  E-value: 3.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061  179 LRQQLKRRDDMIVEMQEQILELQNSLNAQMGHSSHIQTQLDATNRDLFESEREVQRLRKAIADHCVGHTGSNGWSGDVNS 258
Cdd:PRK09039  44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42573061  259 ENNYESPEnGIRDGERIEMLRKEVGELKEVIDGKEYLLRSYKEQKTE---------------LLQKVKELQQ 315
Cdd:PRK09039 124 ELDSEKQV-SARALAQVELLNQQIAALRRQLAALEAALDASEKRDREsqakiadlgrrlnvaLAQRVQELNR 194
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
169-318 8.27e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 8.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061    169 IFSKREVIQKLRQQLKrrddmivEMQEQILELQNSLNAQMGHSSHIQTQLDATNRDLFESEREVQRLRKAIADHcvghtg 248
Cdd:TIGR02168  672 ILERRREIEELEEKIE-------ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL------ 738
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061    249 sngwsgdVNSENNYEspengirdgERIEMLRKEVGELKEVIDGKEYLLRSYKEQKTELLQKVKELQQRLD 318
Cdd:TIGR02168  739 -------EAEVEQLE---------ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792
 
Name Accession Description Interval E-value
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
163-320 1.44e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.38  E-value: 1.44e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061 163 SESGSDIFSKREVIQKLRQQLKRRDDMIVEMQEQILELQNSLNAqmghsshIQTQLDATNRDLFESEREVQRLRKAIADH 242
Cdd:COG4942  37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA-------LEAELAELEKEIAELRAELEAQKEELAEL 109
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061 243 cVGHTGSNGWSGDVNSENNYESPENGIR-----------DGERIEMLRKEVGELKEVIDgkeyLLRSYKEQKTELLQKVK 311
Cdd:COG4942 110 -LRALYRLGRQPPLALLLSPEDFLDAVRrlqylkylapaRREQAEELRADLAELAALRA----ELEAERAELEALLAELE 184

                ....*....
gi 42573061 312 ELQQRLDSQ 320
Cdd:COG4942 185 EERAALEAL 193
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
167-320 7.03e-06

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 47.13  E-value: 7.03e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061 167 SDIFSKREVIQKLRQQLKRRDDMIVEMQEQILELQNSLNAQMGHSSHIQTQLDATNRDLFESEREVQRLRKAIADHCVG- 245
Cdd:COG3883  16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAl 95
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42573061 246 -HTGSNGWSGDV--NSEnnyeSPENGIrdgERIEMLRKEVGELKEVIDGKEYLLRSYKEQKTELLQKVKELQQRLDSQ 320
Cdd:COG3883  96 yRSGGSVSYLDVllGSE----SFSDFL---DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
167-319 2.99e-04

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 42.20  E-value: 2.99e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061 167 SDIFSKREVIQKLRQQLKRRDDMIVEMQEQILELQNSLNAQMGHSSHIQTQLDATNRDLFESEREVQRLRKAIADhcvgh 246
Cdd:COG4372  52 EELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQD----- 126
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42573061 247 tgsngwsgdvnsennyespengirdgeriemLRKEVGELKEVIDGKEYLLRSYKEQKTELLQKVKELQQRLDS 319
Cdd:COG4372 127 -------------------------------LEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAA 168
PRK09039 PRK09039
peptidoglycan -binding protein;
179-315 3.14e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 41.88  E-value: 3.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061  179 LRQQLKRRDDMIVEMQEQILELQNSLNAQMGHSSHIQTQLDATNRDLFESEREVQRLRKAIADHCVGHTGSNGWSGDVNS 258
Cdd:PRK09039  44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42573061  259 ENNYESPEnGIRDGERIEMLRKEVGELKEVIDGKEYLLRSYKEQKTE---------------LLQKVKELQQ 315
Cdd:PRK09039 124 ELDSEKQV-SARALAQVELLNQQIAALRRQLAALEAALDASEKRDREsqakiadlgrrlnvaLAQRVQELNR 194
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
169-318 8.27e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 8.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061    169 IFSKREVIQKLRQQLKrrddmivEMQEQILELQNSLNAQMGHSSHIQTQLDATNRDLFESEREVQRLRKAIADHcvghtg 248
Cdd:TIGR02168  672 ILERRREIEELEEKIE-------ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL------ 738
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061    249 sngwsgdVNSENNYEspengirdgERIEMLRKEVGELKEVIDGKEYLLRSYKEQKTELLQKVKELQQRLD 318
Cdd:TIGR02168  739 -------EAEVEQLE---------ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
176-320 8.50e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 40.29  E-value: 8.50e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061 176 IQKLRQQLKRRDDMIVEMQEQILELQNSLNAqmghsshIQTQLDATNRDLFESEREVQRLRKAIADhcvghtgsngwsgd 255
Cdd:COG1579  19 LDRLEHRLKELPAELAELEDELAALEARLEA-------AKTELEDLEKEIKRLELEIEEVEARIKK-------------- 77
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 42573061 256 vnsennYESPENGIRDGERIEMLRKEVGELKEVIDGKEYLLRSYKEQKTELLQKVKELQQRLDSQ 320
Cdd:COG1579  78 ------YEEQLGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAEL 136
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
162-320 7.33e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 38.11  E-value: 7.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061    162 VSESGSDIFSKREVIQKLRQQLKRRDDMIVEMQEQILElqnslnaqmghsshIQTQLDATNRDLFESEREVQRLRKAIAd 241
Cdd:TIGR02168  248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE--------------LQKELYALANEISRLEQQKQILRERLA- 312
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42573061    242 hcvghtgsngwsgdvNSENNYESPENGI--------RDGERIEMLRKEVGELKEVIDGKEYLLRSYKEQKTELLQKVKEL 313
Cdd:TIGR02168  313 ---------------NLERQLEELEAQLeeleskldELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377

                   ....*..
gi 42573061    314 QQRLDSQ 320
Cdd:TIGR02168  378 EEQLETL 384
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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