|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
139-462 |
2.98e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 99.42 E-value: 2.98e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 139 LAMSLHVLAAIYCSLGRFDEAVPPLERAIQVpDPtrgpdHSLAAfsgHMQLGDTLSMLGQIDRSIACYEEGLKIqiqtlg 218
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALEL-DP-----ETVEA---HLALGNLYRRRGEYDRAIRIHQKLLER------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 219 dtDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIhRAHSEPAsleeaadRRLMAIICEAKGDYENALEHLvlasMAMI 298
Cdd:COG2956 72 --DPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL-DPDDAEA-------LRLLAEIYEQEGDWEKAIEVL----ERLL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 299 ASGQESEVASIDvsIGNIYMSLCRFDEAVFSYQKALtvfkaskgETHPTVASVFVRLAELYHRTGKLRESKSYCENALRI 378
Cdd:COG2956 138 KLGPENAHAYCE--LAELYLEQGDYDEAIEALEKAL--------KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ 207
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 379 YNKPVPgttveeiagGLTEISAIYESVDEPEEALKLLQksmKLLEDKPGQQSAIAglearMGVMYYTVGRYEDARNAFES 458
Cdd:COG2956 208 DPDYLP---------ALPRLAELYEKLGDPEEALELLR---KALELDPSDDLLLA-----LADLLERKEGLEAALALLER 270
|
....
gi 42572867 459 AVTK 462
Cdd:COG2956 271 QLRR 274
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
138-334 |
9.36e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 82.75 E-value: 9.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 138 DLAMSLHVLAAIYCSLGRFDEAVPPLERAIQVpdptrGPDHSLAafsgHMQLGDTLSMLGQIDRSIACYEEGLKIqiqtl 217
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPDDAEA----LYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 218 gdtDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPasleeaadRRLMAIICEAKGDYENALEHLVLAsmam 297
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEA--------LYNLGLALLELGRYDEAIEAYERA---- 136
|
170 180 190
....*....|....*....|....*....|....*..
gi 42572867 298 IAsgQESEVASIDVSIGNIYMSLCRFDEAVFSYQKAL 334
Cdd:COG0457 137 LE--LDPDDADALYNLGIALEKLGRYEEALELLEKLE 171
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
138-379 |
6.99e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.85 E-value: 6.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 138 DLAMSLHVLAAIYCSLGRFDEAVPPLERAIQVPdptrgPDHSLAafsgHMQLGDTLSMLGQIDRSIACYEEGLKIqiqtl 217
Cdd:COG2956 74 DRAEALLELAQDYLKAGLLDRAEELLEKLLELD-----PDDAEA----LRLLAEIYEQEGDWEKAIEVLERLLKL----- 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 218 gdtDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPasleeaadRRLMAIICEAKGDYENALEHL--VLAsm 295
Cdd:COG2956 140 ---GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA--------LLLLAELYLEQGDYEEAIAALerALE-- 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 296 amiasgQESEVASIDVSIGNIYMSLCRFDEAVFSYQKALtvfkaskgETHPTvASVFVRLAELYHRTGKLRESKSYCENA 375
Cdd:COG2956 207 ------QDPDYLPALPRLAELYEKLGDPEEALELLRKAL--------ELDPS-DDLLLALADLLERKEGLEAALALLERQ 271
|
....
gi 42572867 376 LRIY 379
Cdd:COG2956 272 LRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
221-466 |
8.10e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 74.27 E-value: 8.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 221 DPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPasleeaadRRLMAIICEAKGDYENALEHL--VLAsmami 298
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA--------LYNLGLAYLRLGRYEEALADYeqALE----- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 299 asgQESEVASIDVSIGNIYMSLCRFDEAVFSYQKALtvfkaskgETHPTVASVFVRLAELYHRTGKLRESKSYCENALRI 378
Cdd:COG0457 71 ---LDPDDAEALNNLGLALQALGRYEEALEDYDKAL--------ELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 379 ynKPvpgttveEIAGGLTEISAIYESVDEPEEALKLLQKSMKLLEDKPGQQSAIAGLEARMGVMYYTVGRYEDARNAFES 458
Cdd:COG0457 140 --DP-------DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210
|
....*...
gi 42572867 459 AVTKLRAA 466
Cdd:COG0457 211 LAILTLAA 218
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
180-500 |
9.33e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.68 E-value: 9.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 180 LAAFSGHMQLGDTLSMLGQIDRSIACYEEGLKIqiqtlgdtDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRahs 259
Cdd:COG2956 5 VAAALGWYFKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 260 epasleeaadrrlmaiiceakgDYENALEHLvlasmamiasgqesevasidvsiGNIYMSLCRFDEAVFSYQKALtvfka 339
Cdd:COG2956 74 ----------------------DRAEALLEL-----------------------AQDYLKAGLLDRAEELLEKLL----- 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 340 skgETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNKPvpgttveeiAGGLTEISAIYESVDEPEEALKLLQKsm 419
Cdd:COG2956 104 ---ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN---------AHAYCELAELYLEQGDYDEAIEALEK-- 169
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 420 kLLEDKPGQQSAIAGLearmGVMYYTVGRYEDARNAFESAVtklraagEKSAFFGVVLNQMGLACVQLFKIDEAGELFEE 499
Cdd:COG2956 170 -ALKLDPDCARALLLL----AELYLEQGDYEEAIAALERAL-------EQDPDYLPALPRLAELYEKLGDPEEALELLRK 237
|
.
gi 42572867 500 A 500
Cdd:COG2956 238 A 238
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
343-531 |
5.17e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.80 E-value: 5.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 343 ETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYnkpvpgttvEEIAGGLTEISAIYESVDEPEEALKLLQKSMKLl 422
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD---------PDDAEALYNLGLAYLRLGRYEEALADYEQALEL- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 423 edKPGQQSAIAGLearmGVMYYTVGRYEDARNAFESAVtklraagEKSAFFGVVLNQMGLACVQLFKIDEAGELFEEARG 502
Cdd:COG0457 72 --DPDDAEALNNL----GLALQALGRYEEALEDYDKAL-------ELDPDDAEALYNLGLALLELGRYDEAIEAYERALE 138
|
170 180
....*....|....*....|....*....
gi 42572867 503 IleqergpcDQDTLGVYSNLAATYDAMGR 531
Cdd:COG0457 139 L--------DPDDADALYNLGIALEKLGR 159
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
137-293 |
1.65e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.94 E-value: 1.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 137 LDLAMSLHVLAAIYCSLGRFDEAVPPLERAIQvpdptRGPDHSLAafsgHMQLGDTLSMLGQIDRSIACYEEGLKIqiqt 216
Cdd:COG3914 75 LLLAALLELAALLLQALGRYEEALALYRRALA-----LNPDNAEA----LFNLGNLLLALGRLEEALAALRRALAL---- 141
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42572867 217 lgdtDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPasleeaadRRLMAIICEAKGDYENALEHLVLA 293
Cdd:COG3914 142 ----NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA--------LNNLGNALQDLGRLEEAIAAYRRA 206
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
279-531 |
5.13e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.59 E-value: 5.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 279 AKGDYENALEHLVlasmAMIAsgQESEVASIDVSIGNIYMSLCRFDEAVFSYQKALtvfkaskgETHPTVASVFVRLAEL 358
Cdd:COG2956 20 LNGQPDKAIDLLE----EALE--LDPETVEAHLALGNLYRRRGEYDRAIRIHQKLL--------ERDPDRAEALLELAQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 359 YHRTGKLRESKSYCENALRIYnkpvpgttvEEIAGGLTEISAIYESVDEPEEALKLLQKsmkLLEDKPGQqsaiAGLEAR 438
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELD---------PDDAEALRLLAEIYEQEGDWEKAIEVLER---LLKLGPEN----AHAYCE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 439 MGVMYYTVGRYEDARNAFESAVTKLRAAGEksaffgvVLNQMGLACVQLFKIDEAGELFEEargILEQergpcDQDTLGV 518
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCAR-------ALLLLAELYLEQGDYEEAIAALER---ALEQ-----DPDYLPA 214
|
250
....*....|...
gi 42572867 519 YSNLAATYDAMGR 531
Cdd:COG2956 215 LPRLAELYEKLGD 227
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
138-274 |
5.29e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.10 E-value: 5.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 138 DLAMSLHVLAAIYCSLGRFDEAVPPLERAIQVPdptrgPDHSLAafsgHMQLGDTLSMLGQIDRSIACYEEGLKIqiqtl 217
Cdd:COG0457 74 DDAEALNNLGLALQALGRYEEALEDYDKALELD-----PDDAEA----LYNLGLALLELGRYDEAIEAYERALEL----- 139
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 42572867 218 gdtDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPASLEEAADRRLMA 274
Cdd:COG0457 140 ---DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAA 193
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
265-461 |
5.52e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.93 E-value: 5.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 265 EEAADRRLMAIICEAKGDYENALEHLVLASMAMI----ASGQESEVASIDVSIGNIYMSLCRFDEAVFSYQKALtvfkas 340
Cdd:COG3914 32 LEAAALAAALGLALLLLAALAEAAAAALLALAAGeaaaAAAALLLLAALLELAALLLQALGRYEEALALYRRAL------ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 341 kgETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIynKPvpgttveEIAGGLTEISAIYESVDEPEEALKLLQksmK 420
Cdd:COG3914 106 --ALNPDNAEALFNLGNLLLALGRLEEALAALRRALAL--NP-------DFAEAYLNLGEALRRLGRLEEAIAALR---R 171
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 42572867 421 LLEDKPGQQSAIAGLearmGVMYYTVGRYEDARNAFESAVT 461
Cdd:COG3914 172 ALELDPDNAEALNNL----GNALQDLGRLEEAIAAYRRALE 208
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
231-379 |
6.67e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.51 E-value: 6.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 231 LAEAYVQAMQFNKAEELCKKTLEIHRAHSEPasleeaadRRLMAIICEAKGDYENALEHLvlaSMAMIASGQESEVAsid 310
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEA--------FALLGEILLQLGDLDEAIVLL---HEALELDPDEPEAR--- 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 42572867 311 VSIGNIYMSLCRFDEAVFSYQKALtvfkaskgETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIY 379
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKAL--------KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
305-381 |
1.02e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 55.09 E-value: 1.02e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42572867 305 EVASIDVSIGNIYMSLCRFDEAVFSYQKALTVFKASKGETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNK 381
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
138-264 |
1.17e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.78 E-value: 1.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 138 DLAMSLHVLAAIYCSLGRFDEAVPPLERAIQVpdptrGPDHSLAafsgHMQLGDTLSMLGQIDRSIACYEEGLKIqiqtl 217
Cdd:COG3914 110 DNAEALFNLGNLLLALGRLEEALAALRRALAL-----NPDFAEA----YLNLGEALRRLGRLEEAIAALRRALEL----- 175
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 42572867 218 gdtDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPASL 264
Cdd:COG3914 176 ---DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
138-215 |
3.72e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 53.55 E-value: 3.72e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42572867 138 DLAMSLHVLAAIYCSLGRFDEAVPPLERAIQVPDPTRGPDHSLAAFSgHMQLGDTLSMLGQIDRSIACYEEGLKIQIQ 215
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATT-LLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
185-290 |
6.21e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.24 E-value: 6.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 185 GHMQLGDTLSMLGQIDRSIACYEEGLKIqiqtlgdtDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPasl 264
Cdd:COG4235 19 GWLLLGRAYLRLGRYDEALAAYEKALRL--------DPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA--- 87
|
90 100
....*....|....*....|....*.
gi 42572867 265 eeaadRRLMAIICEAKGDYENALEHL 290
Cdd:COG4235 88 -----LYLLGLAAFQQGDYAEAIAAW 108
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
140-293 |
1.74e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.27 E-value: 1.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 140 AMSLHVLAAIYCSLGRFDEAVPPLERAIQvpdptRGPDHSLAafsgHMQLGDTLSMLGQIDRSIACYEEGLKIqiqtlgd 219
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALE-----LDPDNPEA----FALLGEILLQLGDLDEAIVLLHEALEL------- 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 42572867 220 tDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPasleeaadRRLMAIICEAKGDYENALEHLVLA 293
Cdd:COG4783 68 -DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA--------YLRLARAYRALGRPDEAIAALEKA 132
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
145-297 |
2.37e-08 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 55.78 E-value: 2.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 145 VLAAIYCSLGRFDEAVPPLERAIQVpdpTRGPDHSLAAFSGHMQLGDTLSMLGQIDRSIACYEEGLKIQIQTLGDTDPRV 224
Cdd:pfam17874 45 VLGEAYLCLGDLDAALQAMREAEAL---ARRADSPHVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHGLQHLPLH 121
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42572867 225 GETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPASLEEAAdrrLMAIICEAKGDYENALEHLVLASMAM 297
Cdd:pfam17874 122 GFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPDAAVDAYV---LLARIALAQGELEEALTLLRRAELLA 191
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
146-460 |
6.30e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.47 E-value: 6.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 146 LAAIYCSLGRFDEAVPPLERAIQvpdptRGPDHSLA---AFSGHMQLGDT------LSMLGQIDRSIACY---------- 206
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALG-----LDPDDPAAlslLGEAYLALGDFekaaeyLAKATELDPENAAArtqlgiskls 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 207 ----EEGLKiQIQTLGDTDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEihrahSEPASleeAADRRLMAIICEAKGD 282
Cdd:TIGR02917 410 qgdpSEAIA-DLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK-----KQPDN---ASLHNLLGAIYLGKGD 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 283 YENALEHLvlaSMAM-IASG---QESEVASIDVSIGNIymslcrfDEAVFSYQKALTvfkaskgeTHPTVASVFVRLAEL 358
Cdd:TIGR02917 481 LAKAREAF---EKALsIEPDffpAAANLARIDIQEGNP-------DDAIQRFEKVLT--------IDPKNLRAILALAGL 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 359 YHRTGKLRESKSYCENALRIYNKpvpgttveEIAGGLTEISAiYESVDEPEEALKLLQKSMKLledKPGQQSAIAGLear 438
Cdd:TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQ--------EIEPALALAQY-YLGKGQLKKALAILNEAADA---APDSPEAWLML--- 607
|
330 340
....*....|....*....|..
gi 42572867 439 mGVMYYTVGRYEDARNAFESAV 460
Cdd:TIGR02917 608 -GRAQLAAGDLNKAVSSFKKLL 628
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
143-255 |
7.16e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.35 E-value: 7.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 143 LHVLAAIYCSLGRFDEAVPPLERAIQvpdptRGPDHSLAafsgHMQLGDTLSMLGQIDRSIACYEEGLKIqiqtlgdtDP 222
Cdd:COG4783 41 FALLGEILLQLGDLDEAIVLLHEALE-----LDPDEPEA----RLNLGLALLKAGDYDEALALLEKALKL--------DP 103
|
90 100 110
....*....|....*....|....*....|...
gi 42572867 223 RVGETCRYLAEAYVQAMQFNKAEELCKKTLEIH 255
Cdd:COG4783 104 EHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
143-270 |
7.44e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 7.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 143 LHVLAAIYCSLGRFDEAVPPLERAIQvpdptRGPDHSLAafsgHMQLGDTLSMLGQIDRSIACYEEGLKIqiqtlgdtDP 222
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALR-----LDPDNADA----LLDLAEALLAAGDTEEAEELLERALAL--------DP 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 42572867 223 RVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPASLEEAADR 270
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
304-460 |
1.69e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.58 E-value: 1.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 304 SEVASIDVSIGNIYMSLCRFDEAVFSYQKALtvfkaskgETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNKpv 383
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKAL--------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD-- 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42572867 384 pgttvEEIAggLTEISAIYESVDEPEEALKLLQKSMKLLEDKPgqqsaiaGLEARMGVMYYTVGRYEDARNAFESAV 460
Cdd:COG4783 71 -----EPEA--RLNLGLALLKAGDYDEALALLEKALKLDPEHP-------EAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
149-254 |
6.06e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 6.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 149 IYCSLGRFDEAVPPLERAIQvpdptRGPDHSLAafsgHMQLGDTLSMLGQIDRSIAcYEEGLKIqiqtlgdtDPRVGETC 228
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALE-----LDPDNADA----LNNLGLLLLEQGRYDEAIA-LEKALKL--------DPNNAEAL 62
|
90 100
....*....|....*....|....*.
gi 42572867 229 RYLAEAYVQAMQFNKAEELCKKTLEI 254
Cdd:COG3063 63 LNLAELLLELGDYDEALAYLERALEL 88
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
186-257 |
1.58e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.84 E-value: 1.58e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42572867 186 HMQLGDTLSMLGQIDRSIACYEEGLKIQIQTLGDTDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRA 257
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
137-255 |
2.29e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.65 E-value: 2.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 137 LDLAMSLHVLAAIYCSLGRFDEAVPPLERAIQVpdptrGPDHSLAafsgHMQLGDTLSMLGQIDRSIACYEEGLKIqiqt 216
Cdd:COG5010 51 AKAFAIESPSDNLYNKLGDFEESLALLEQALQL-----DPNNPEL----YYNLALLYSRSGDKDEAKEYYEKALAL---- 117
|
90 100 110
....*....|....*....|....*....|....*....
gi 42572867 217 lgdtDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIH 255
Cdd:COG5010 118 ----SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
231-290 |
2.82e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 2.82e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 231 LAEAYVQAMQFNKAEELCKKTLEIHRAHSEPASLEEAADRRLMAIICEAKGDYENALEHL 290
Cdd:pfam13424 9 LAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELL 68
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
265-424 |
3.39e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.72 E-value: 3.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 265 EEAADRRLMAIICEAKGDYENALEHL--VLAsmamiasgQESEVASIDVSIGNIYMSLCRFDEAVFSYQKALtvfkaskg 342
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLekALE--------LDPDNPEAFALLGEILLQLGDLDEAIVLLHEAL-------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 343 ETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYnkpvpgttvEEIAGGLTEISAIYESVDEPEEALKLLQKSMKLL 422
Cdd:COG4783 66 ELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLD---------PEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
..
gi 42572867 423 ED 424
Cdd:COG4783 137 PD 138
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
313-439 |
4.40e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 4.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 313 IGNIYMSLCRFDEAVFSYQKALtvfkaskgETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNKPVPgttveeia 392
Cdd:COG4235 23 LGRAYLRLGRYDEALAAYEKAL--------RLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPE-------- 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 42572867 393 gGLTEISAIYESVDEPEEALKLLQksmKLLEDKPGqQSAIAGLEARM 439
Cdd:COG4235 87 -ALYLLGLAAFQQGDYAEAIAAWQ---KLLALLPA-DAPARLLEASI 128
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
255-421 |
5.25e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.49 E-value: 5.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 255 HRAHSEPASLEEAADRRLMAIICEAKGDYENALEHLVLASMAMIASGQESEVASIDVSIGNIYMSLCRFDEAVFSYQKAL 334
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 335 tvfkaskgETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNKPVpgttveEIAGGLteiSAIYESVDEPEEALKL 414
Cdd:COG5010 82 --------QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP------NAYSNL---AALLLSLGQDDEAKAA 144
|
....*..
gi 42572867 415 LQKSMKL 421
Cdd:COG5010 145 LQRALGT 151
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
87-341 |
6.33e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 48.01 E-value: 6.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 87 FLLKLARDAIASGEgPNKALDYAIRATKSFerccaavappipggSDGGPVLDLamslhvLAAIYCSLGRFDEAVPPLERA 166
Cdd:cd24142 2 ELLEKAEELLDQGN-FELALKFLQRALELE--------------PNNVEALEL------LGEILLELGDVEEAREVLLRA 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 167 IQVpDPTRGPdhslaafSGHMQlgdtlsmLGQI---DRSIACYEEGLKI---QIQTL----GDTDPRVGETCRYLAEAYV 236
Cdd:cd24142 61 IEL-DPDGGY-------EKYLY-------LGQLsggEEALQYYEKGIEIleeELQALqaasAEAEEEAEELKRKLSSALC 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 237 qAMqfnkAE----ELCkktleihrahsepasLEEAADRRlmaiiCEAkgdyenalehlvLASMAMIASGQESEVASidvS 312
Cdd:cd24142 126 -AL----AEiymtDLC---------------DEPDAEQR-----CEE------------LITKALELDPTNPEALQ---T 165
|
250 260
....*....|....*....|....*....
gi 42572867 313 IGNIYMSLCRFDEAVFSYQKALTVFKASK 341
Cdd:cd24142 166 LASLRISQQRPDEAKEALRRSLELWKDLK 194
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
225-417 |
1.37e-05 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 47.31 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 225 GETCRYLAEAYVQAMQFNKAEELCKKTLeihrAHSEPASLEE-AADRRLMAIICEAKGDYENALEHLVLASMAMIASGQE 303
Cdd:pfam17874 1 GEIAALRAQLAISKGDAERALELAEQAL----ALLPEDDLLArGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 304 SEVASIDVSIGNIYMSLCRFDEAVFSYQKALTVFKASKGETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNKPV 383
Cdd:pfam17874 77 HVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWE 156
|
170 180 190
....*....|....*....|....*....|....
gi 42572867 384 PGTTVEEIAGglteISAIYESVDEPEEALKLLQK 417
Cdd:pfam17874 157 PDAAVDAYVL----LARIALAQGELEEALTLLRR 186
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
143-437 |
2.28e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 143 LHVLAAIYCSLGRFDEAVPPLERAIQVpDPTRGpdhslaafSGHMQLGdtLSMLGQIDRSIAcyEEGLkiqiQTLGDTDP 222
Cdd:TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATEL-DPENA--------AARTQLG--ISKLSQGDPSEA--IADL----ETAAQLDP 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 223 RVGETCRYLAEAYVQAMQFNKAEELCKKTLEihrahSEPASleeAADRRLMAIICEAKGDYENALEHLvlaSMAM-IASG 301
Cdd:TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEK-----KQPDN---ASLHNLLGAIYLGKGDLAKAREAF---EKALsIEPD 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 302 ---QESEVASIDVSIGNIYMSLCRFDEAVFSYQK------ALTVFKASKG-------------ETHPTVASVFVRLAELY 359
Cdd:TIGR02917 498 ffpAAANLARIDIQEGNPDDAIQRFEKVLTIDPKnlrailALAGLYLRTGneeeavawlekaaELNPQEIEPALALAQYY 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 360 HRTGKL--------------RESKSYCENALRIY------NKPVPG-TTVEEIAG----GLTEISAIYESVDEPEEALKL 414
Cdd:TIGR02917 578 LGKGQLkkalailneaadaaPDSPEAWLMLGRAQlaagdlNKAVSSfKKLLALQPdsalALLLLADAYAVMKNYAKAITS 657
|
330 340
....*....|....*....|...
gi 42572867 415 LQKSMKLLEDKPGQQSAIAGLEA 437
Cdd:TIGR02917 658 LKRALELKPDNTEAQIGLAQLLL 680
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
276-378 |
3.80e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 276 ICEAKGDYENALEHLvlasmaMIASGQESEVASIDVSIGNIYMSLCRFDEAVfSYQKALtvfkaskgETHPTVASVFVRL 355
Cdd:COG3063 1 LYLKLGDLEEAEEYY------EKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKAL--------KLDPNNAEALLNL 65
|
90 100
....*....|....*....|...
gi 42572867 356 AELYHRTGKLRESKSYCENALRI 378
Cdd:COG3063 66 AELLLELGDYDEALAYLERALEL 88
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
476-531 |
4.35e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.99 E-value: 4.35e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 42572867 476 VLNQMGLACVQLFKIDEAGELFEEARGILEQERGPCDQDTLGVYSNLAATYDAMGR 531
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGR 60
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
407-531 |
5.43e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.75 E-value: 5.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 407 EPEEALKLLQKsmkLLEDKPGQQSAIAGLearmGVMYYTVGRYEDARNAFESAvtkLRAAGEksafFGVVLNQMGLACVQ 486
Cdd:COG3914 93 RYEEALALYRR---ALALNPDNAEALFNL----GNLLLALGRLEEALAALRRA---LALNPD----FAEAYLNLGEALRR 158
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 42572867 487 LFKIDEAGELFEEArgiLEQErgPcdqDTLGVYSNLAATYDAMGR 531
Cdd:COG3914 159 LGRLEEAIAALRRA---LELD--P---DNAEALNNLGNALQDLGR 195
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
217-531 |
1.33e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 44.91 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 217 LGDTDPRVGET----CRYLaeaYVQAmQFNKAEELCKKTLEIHRAHSEPASLEEAADRRLMAIICEAKGDYENALE--HL 290
Cdd:NF040586 384 LESDDPEVRRLlldqVRYL---YLRG-DYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAREldED 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 291 VLASM--AMIASGQESEVASIDVSIGNIYMSLCRFDEAVFSYQKALTVFKASKGETHPTVASVFVRLAELYHRTGKLREs 368
Cdd:NF040586 460 TLERQrrVLGLGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYRE- 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 369 ksycenALRIYnkpvpgttveeiagglteisaiyesvdepEEALKLLQKSmkLLEDKPGQQSAIAGLeARMgvmYYTVGR 448
Cdd:NF040586 539 ------ALELD-----------------------------REVLRRRRRV--LGPDHPRTLLSANNL-ARD---LRELGR 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 449 YEDARNAFESAVTKLRAAGEKSAFFGVVLNQMGLAcVQLFK---IDEAGELFEEARGILEQERGPCDQDTLGVYSNLAAT 525
Cdd:NF040586 578 YAEALDLLEEALERYREVLGGPDHPDTLRAAKSLA-VALRRagrLEEALELAEDTYERYRRRFGPDHPDTLAAALSLAND 656
|
....*.
gi 42572867 526 YDAMGR 531
Cdd:NF040586 657 LRALGD 662
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
139-178 |
1.35e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 39.41 E-value: 1.35e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 42572867 139 LAMSLHVLAAIYCSLGRFDEAVPPLERAIQVpdpTR---GPDH 178
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAI---RErvlGPDH 40
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
432-506 |
1.37e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.45 E-value: 1.37e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42572867 432 IAGLEARMGVMYYTVGRYEDARNAFESAVTKLRAA-GEKSAFFGVVLNQMGLACVQLFKIDEAGELFEEARGILEQ 506
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
325-465 |
1.40e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 325 EAVFSYQKALtvfkaskgETHPTVASVFVRLAELYHRTGKLRESKSYCENALRIynKPvpgttveEIAGGLTEISAIYES 404
Cdd:COG4235 1 EAIARLRQAL--------AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL--DP-------DNADALLDLAEALLA 63
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 42572867 405 VDEPEEALKLLQKSMKLledKPGQQSAIAGLearmGVMYYTVGRYEDARNAFESAVTKLRA 465
Cdd:COG4235 64 AGDTEEAEELLERALAL---DPDNPEALYLL----GLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
138-293 |
3.32e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.21 E-value: 3.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 138 DLAMSLHVLAAIYCSLGRFDEAVPPLERAIQvpdptRGPDHSLAafsgHMQLGDTLSMLGQIDRSIACYEEGLKIqiqtl 217
Cdd:COG4785 71 DLAQLYYERGVAYDSLGDYDLAIADFDQALE-----LDPDLAEA----YNNRGLAYLLLGDYDAALEDFDRALEL----- 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 218 gdtDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPASLE---------EAADRRLMAIIC---EAKGDYEN 285
Cdd:COG4785 137 ---DPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLylaerkldpEKALALLLEDWAtayLLQGDTEE 213
|
....*...
gi 42572867 286 ALEHLVLA 293
Cdd:COG4785 214 ARELFKLA 221
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
349-500 |
5.94e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.18 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 349 ASVFVRLAELYHRTGKLRESKSYCENALRIYnkpvpgttvEEIAGGLTEISAIYESVDEPEEALKLLQKSMKLledKPGQ 428
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELD---------PDNPEAFALLGEILLQLGDLDEAIVLLHEALEL---DPDE 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 42572867 429 QSAIAGLearmGVMYYTVGRYEDARNAFESAVtklraagEKSAFFGVVLNQMGLACVQLFKIDEAGELFEEA 500
Cdd:COG4783 72 PEARLNL----GLALLKAGDYDEALALLEKAL-------KLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| SNAP |
pfam14938 |
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ... |
322-500 |
6.10e-04 |
|
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.
Pssm-ID: 405606 [Multi-domain] Cd Length: 273 Bit Score: 41.78 E-value: 6.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 322 RFDEAVFSYQKALTVFKASKgeTHPTVASVFVRLAELYHRTGklreSKSYCENAlriynkpvpgttveeiaggLTEISAI 401
Cdd:pfam14938 22 KYEEAADLYIQAANAYKLAK--NWEEAGEAFEKAAECQLKLG----SKDEAANA-------------------YVEAAKC 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 402 YESVDePEEALKLLQKSMKLLEDKpGQQSAIAGLEARMGVMYYT-VGRYEDARNAFESAVTKLRAAGEKSAFfgvvlNQM 480
Cdd:pfam14938 77 YKKVD-PEEAVRALEKAIEIYTEM-GRFRRAAKHKKEIAELYEQeLGDLEKAIEAYEQAADWYEGEGASALA-----NKC 149
|
170 180
....*....|....*....|....
gi 42572867 481 GLACVQLFKIDE----AGELFEEA 500
Cdd:pfam14938 150 YLKVADLSAELEdypkAIEIYEKV 173
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
138-213 |
7.52e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.00 E-value: 7.52e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42572867 138 DLAMSLHVLAAIYCSLGRFDEAVpPLERAIQVpdptrGPDHSLAafsgHMQLGDTLSMLGQIDRSIACYEEGLKIQ 213
Cdd:COG3063 24 DNADALNNLGLLLLEQGRYDEAI-ALEKALKL-----DPNNAEA----LLNLAELLLELGDYDEALAYLERALELD 89
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
400-503 |
8.79e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 8.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 400 AIYESVDEPEEALKLLQKSMKLledKPGQQSAIAGLearmGVMYYTVGRYEDARNAFESAVtklraagEKSAFFGVVLNQ 479
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQL---DPNNPELYYNL----ALLYSRSGDKDEAKEYYEKAL-------ALSPDNPNAYSN 127
|
90 100
....*....|....*....|....
gi 42572867 480 MGLACVQLFKIDEAGELFEEARGI 503
Cdd:COG5010 128 LAALLLSLGQDDEAKAALQRALGT 151
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
397-531 |
8.88e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 8.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 397 EISAIYESVDEPEEALKLLQKSMKLLEDKPGQQSAIAGLEARMGVMYYTVGRYEDARNAFESAVtklraagEKSAFFGVV 476
Cdd:COG5010 18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL-------QLDPNNPEL 90
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 42572867 477 LNQMGLACVQLFKIDEAGELFEEARGIleqergpcDQDTLGVYSNLAATYDAMGR 531
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQ 137
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
322-499 |
8.91e-04 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 41.41 E-value: 8.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 322 RFDEAVFSYQKALTVFKASKgeTHPTVASVFVRLAELYHRTGKLRESKSYCENALRIYNKpvpgttveeiagglteisai 401
Cdd:cd15832 27 KYEEAAELYEKAANAFKLAK--NWEEAGDAFLKAAECQLKLDSKHDAANAYVEAAKCYKK-------------------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 402 yesvDEPEEALKLLQKSMKLLEDKpGQQSAIAGLEARMGVMYYTV-GRYEDARNAFESAVTKLRAAGEKSAFfgvvlNQM 480
Cdd:cd15832 85 ----VDPQEAVNCLEKAIEIYTEM-GRFRQAAKHLKEIAELYENElGDLDKAIEAYEQAADYYEGEGANSLA-----NKC 154
|
170 180
....*....|....*....|...
gi 42572867 481 GLACVQLF----KIDEAGELFEE 499
Cdd:cd15832 155 YLKVADLAaqleDYDKAIEIYEQ 177
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
312-336 |
1.02e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 1.02e-03
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
188-290 |
1.25e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 188 QLGDTLSMLGQIDRSIACYEEGLKIqiqtlgdtDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRAHSEPasleea 267
Cdd:COG5010 59 PSDNLYNKLGDFEESLALLEQALQL--------DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA------ 124
|
90 100
....*....|....*....|...
gi 42572867 268 adRRLMAIICEAKGDYENALEHL 290
Cdd:COG5010 125 --YSNLAALLLSLGQDDEAKAAL 145
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
186-290 |
1.28e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 40.64 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 186 HMQLGDTLSMLGQIDRSIACYEEGLKIQIQTlgDTDPRVGetcryLAEAYVQAMQFnkaeELCKKTLE-IHRAHSEPASL 264
Cdd:COG4700 92 RVRLADALLELGRYDEAIELYEEALTGIFAD--DPHILLG-----LAQALFELGRY----AEALETLEkLIAKNPDFKSS 160
|
90 100
....*....|....*....|....*.
gi 42572867 265 EEAAdrrLMAIICEAKGDYENALEHL 290
Cdd:COG4700 161 DAHL---LYARALEALGDLEAAEAEL 183
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
401-500 |
1.49e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 401 IYESVDEPEEALKLLQKSMKLledKPGQQSAIAGLearmGVMYYTVGRYEDARnafesavtKLRAAGEKSAFFGVVLNQM 480
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL---DPDNADALNNL----GLLLLEQGRYDEAI--------ALEKALKLDPNNAEALLNL 65
|
90 100
....*....|....*....|
gi 42572867 481 GLACVQLFKIDEAGELFEEA 500
Cdd:COG3063 66 AELLLELGDYDEALAYLERA 85
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
313-336 |
1.99e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 1.99e-03
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
230-335 |
3.36e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 39.07 E-value: 3.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 230 YLAEAYVQAMQFNKAEELCKKTLEihraHSEPASLEEAADRRLmAIICEAKGDYENALEHLvlasMAMIASGQESEVASI 309
Cdd:COG2976 95 LLAKAAVDAGDLDKAAAQLQWVLD----NAKDPALKALARLRL-ARVLLAQKKYDEALATL----DAVKPEAFAALYAEL 165
|
90 100
....*....|....*....|....*.
gi 42572867 310 dvsIGNIYMSLCRFDEAVFSYQKALT 335
Cdd:COG2976 166 ---RGDILLAQGDKAEARAAYQKALA 188
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
88-169 |
4.29e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 4.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 88 LLKLARDAIASGEgPNKALDYAIRATKSFERccaavappipggSDGGPVLDLAMSLHVLAAIYCSLGRFDEAVPPLERAI 167
Cdd:pfam13424 6 LNNLAAVLRRLGR-YDEALELLEKALEIARR------------LLGPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
..
gi 42572867 168 QV 169
Cdd:pfam13424 73 AL 74
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
408-506 |
5.77e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 39.46 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 408 PEEALKLLQKSMKLLEDKPGQQSAIAgLEARMGVMYYTVGRYEDARNAFESA----VTKLRAAGEKSAFFGVVLNQMGLA 483
Cdd:COG3899 721 YAEALRYLERALELLPPDPEEEYRLA-LLLELAEALYLAGRFEEAEALLERAlaarALAALAALRHGNPPASARAYANLG 799
|
90 100
....*....|....*....|...
gi 42572867 484 CVQLFKIDEAGELFEEARGILEQ 506
Cdd:COG3899 800 LLLLGDYEEAYEFGELALALAER 822
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
431-531 |
7.20e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 36.91 E-value: 7.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 431 AIAGLEAR-------------MGVMYYTVGRYEDARNAFESAvtkLRAAGEKSAffgvVLNQMGLACVQLFKIDEAGELF 497
Cdd:COG4235 2 AIARLRQAlaanpndaegwllLGRAYLRLGRYDEALAAYEKA---LRLDPDNAD----ALLDLAEALLAAGDTEEAEELL 74
|
90 100 110
....*....|....*....|....*....|....
gi 42572867 498 EEArgiLEQergpcDQDTLGVYSNLAATYDAMGR 531
Cdd:COG4235 75 ERA---LAL-----DPDNPEALYLLGLAAFQQGD 100
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
206-424 |
7.32e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 38.74 E-value: 7.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 206 YEEGLKiQIQTLGDTDPRVGETCRYLAEAYVQAMQFNKAEELCKKtLEIHRAHSEPA--SLEEAADRRLMAiicEAKGDY 283
Cdd:COG3071 101 AEQALA-TLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPA-LRKHKALSAEEaqALERRAYLGLLR---QAARDA 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 284 ENALEH--------------LVLASMAMIASGQESEVASI---------DVSIGNIYmSLCRFDEAvfsyQKALTVF-KA 339
Cdd:COG3071 176 EALKALwkalpraerrdpelAAAYARALIALGDHDEAERLlrealkrqwDPRLVRLY-GRLQGGDP----AKQLKRAeKW 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 340 SKgeTHPTVASVFVRLAELYHRTGKLRESKSYCENALRIynKPVPGTtveeiaggLTEISAIYESVDEPEEALKLLQKSM 419
Cdd:COG3071 251 LK--KHPNDPDLLLALGRLCLRNQLWGKAREYLEAALAL--RPSAEA--------YAELARLLEQLGDPEEAAEHYRKAL 318
|
....*
gi 42572867 420 KLLED 424
Cdd:COG3071 319 ALALG 323
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
430-531 |
8.51e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 36.71 E-value: 8.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 430 SAIAGLEARMGVMYYTVGRYEDARNAFESAVtklraagEKSAFFGVVLNQMGLACVQLFKIDEAGELFEEARGIleqerg 509
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKAL-------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67
|
90 100
....*....|....*....|..
gi 42572867 510 pcDQDTLGVYSNLAATYDAMGR 531
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGD 87
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
146-208 |
8.86e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.12 E-value: 8.86e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 42572867 146 LAAIYCSLGRFDEAVPPLERAIQvpdptRGPDHSLAAFSgHMQLGDTLSMLGQIDRSIACYEE 208
Cdd:COG1729 36 LGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDA-LLKLGLSYLELGDYDKARATLEE 92
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| DUF3856 |
pfam12968 |
Domain of Unknown Function (DUF3856); TPR-like protein. The 2hr2 structure belongs to the SCOP ... |
313-428 |
9.79e-03 |
|
Domain of Unknown Function (DUF3856); TPR-like protein. The 2hr2 structure belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family. A DALI search gives hits with the putative peptidyl-prolyl isomerase 2fbn (Z=16), the SGTA protein (Z=16), the PLCR protein 2qfc (Z=16), a putative FK506-binding protein (PDB:1qz2-A; DALI Z-score 15.3; RMSD 2.9; 16% sequence identity within 132 superimposed residues), and with the tetratricopeptide repeats of the protein phosphatase 5 (PDB:2bug; DALI Z-score 15.1; RMSD 2.5; 19% sequence identity within 117 superimposed residues).
Pssm-ID: 463761 [Multi-domain] Cd Length: 142 Bit Score: 36.76 E-value: 9.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 313 IGNIYMSLCR---------FDEAVFSYQKALTVfkaskGETHPTV---------ASVFVRLAELYHRTGKLRESKSYCEN 374
Cdd:pfam12968 6 VGESYLALSQgekqleaaaFEEAAESYRRAMEM-----SRTIPTEeafdydgfdAFCHAGLSEALIGLGRYEEALHSAEK 80
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90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572867 375 ALRIYNKPVPGTTVEeiagGLTEISAIY------ESVDEPEEALKLLQKSMKLLEDKPGQ 428
Cdd:pfam12968 81 ALRYFNRRGELHQDE----GKLWIAAVFskaralEGLGRKEEAIKYFRMAGEMIAERKGE 136
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