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Conserved domains on  [gi|42572015|ref|NP_974098|]
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ribulose bisphosphate carboxylase small chain 1A [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02289 super family cl42969
ribulose-bisphosphate carboxylase small chain
 1-100 6.17e-69

ribulose-bisphosphate carboxylase small chain


The actual alignment was detected with superfamily member PLN02289:

Pssm-ID: 215163 [Multi-domain]  Cd Length: 176  Bit Score: 205.48  E-value: 6.17e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572015    1 MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSE 80
Cdd:PLN02289   1 MASSMLSSAAVATSPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMQVWPPIGKKKFETLSYLPDLTDEE 80

                         90       100
                 ....*....|....*....|
gi 42572015   81 LAKEVDYLIRNKWIPCVEFD 100
Cdd:PLN02289  81 LAKEVDYLLRNKWVPCLEFE 100
 
Name Accession Description Interval E-value
PLN02289 PLN02289
ribulose-bisphosphate carboxylase small chain
 1-100 6.17e-69

ribulose-bisphosphate carboxylase small chain


Pssm-ID: 215163 [Multi-domain]  Cd Length: 176  Bit Score: 205.48  E-value: 6.17e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572015    1 MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSE 80
Cdd:PLN02289   1 MASSMLSSAAVATSPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMQVWPPIGKKKFETLSYLPDLTDEE 80

                         90       100
                 ....*....|....*....|
gi 42572015   81 LAKEVDYLIRNKWIPCVEFD 100
Cdd:PLN02289  81 LAKEVDYLLRNKWVPCLEFE 100
RuBisCO_small cd03527
Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a ...
 65-102 2.34e-17

Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.


Pssm-ID: 239603  Cd Length: 99  Bit Score: 71.52  E-value: 2.34e-17
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 42572015  65 KKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFDTD 102
Cdd:cd03527   1 RTFETFSYLPPLTDEQIAKQIDYIISNGWAPCLEFTEP 38
RuBisCO_small pfam00101
Ribulose bisphosphate carboxylase, small chain;
67-102 1.37e-16

Ribulose bisphosphate carboxylase, small chain;


Pssm-ID: 425465  Cd Length: 97  Bit Score: 69.83  E-value: 1.37e-16
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 42572015    67 FETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFDTD 102
Cdd:pfam00101   1 FETFSYLPPLTDEQIAKQVQYILSQGWIPGIEFTDD 36
RbcS COG4451
Ribulose bisphosphate carboxylase small subunit [Carbohydrate transport and metabolism];
66-99 3.84e-10

Ribulose bisphosphate carboxylase small subunit [Carbohydrate transport and metabolism];


Pssm-ID: 443549  Cd Length: 102  Bit Score: 53.28  E-value: 3.84e-10
                        10        20        30
                ....*....|....*....|....*....|....
gi 42572015  66 KFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEF 99
Cdd:COG4451   4 TQETFSYLPPLLDAEIVAQVRYLLAQGWAIGIEH 37
 
Name Accession Description Interval E-value
PLN02289 PLN02289
ribulose-bisphosphate carboxylase small chain
 1-100 6.17e-69

ribulose-bisphosphate carboxylase small chain


Pssm-ID: 215163 [Multi-domain]  Cd Length: 176  Bit Score: 205.48  E-value: 6.17e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42572015    1 MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSE 80
Cdd:PLN02289   1 MASSMLSSAAVATSPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMQVWPPIGKKKFETLSYLPDLTDEE 80

                         90       100
                 ....*....|....*....|
gi 42572015   81 LAKEVDYLIRNKWIPCVEFD 100
Cdd:PLN02289  81 LAKEVDYLLRNKWVPCLEFE 100
RuBisCO_small cd03527
Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a ...
 65-102 2.34e-17

Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.


Pssm-ID: 239603  Cd Length: 99  Bit Score: 71.52  E-value: 2.34e-17
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 42572015  65 KKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFDTD 102
Cdd:cd03527   1 RTFETFSYLPPLTDEQIAKQIDYIISNGWAPCLEFTEP 38
RuBisCO_small pfam00101
Ribulose bisphosphate carboxylase, small chain;
67-102 1.37e-16

Ribulose bisphosphate carboxylase, small chain;


Pssm-ID: 425465  Cd Length: 97  Bit Score: 69.83  E-value: 1.37e-16
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 42572015    67 FETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFDTD 102
Cdd:pfam00101   1 FETFSYLPPLTDEQIAKQVQYILSQGWIPGIEFTDD 36
RbcS pfam12338
Ribulose-1,5-bisphosphate carboxylase small subunit; This domain family is found in eukaryotes, ...
 2-42 6.15e-14

Ribulose-1,5-bisphosphate carboxylase small subunit; This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam00101. There is a conserved APF sequence motif. There are two completely conserved residues (L and P) that may be functionally important. This family is the small subunit of ribulose-1,5-bisphosphate.


Pssm-ID: 403524  Cd Length: 45  Bit Score: 61.54  E-value: 6.15e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 42572015     2 ASSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANND 42
Cdd:pfam12338   1 ASSMVSSAAVAtinrAAPAQASMVAPFTGLKSTAAFPVTRKANND 45
RbcS COG4451
Ribulose bisphosphate carboxylase small subunit [Carbohydrate transport and metabolism];
66-99 3.84e-10

Ribulose bisphosphate carboxylase small subunit [Carbohydrate transport and metabolism];


Pssm-ID: 443549  Cd Length: 102  Bit Score: 53.28  E-value: 3.84e-10
                        10        20        30
                ....*....|....*....|....*....|....
gi 42572015  66 KFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEF 99
Cdd:COG4451   4 TQETFSYLPPLLDAEIVAQVRYLLAQGWAIGIEH 37
rbcS CHL00130
ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
 66-102 8.06e-08

ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed


Pssm-ID: 177052  Cd Length: 138  Bit Score: 47.83  E-value: 8.06e-08
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 42572015   66 KFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFDTD 102
Cdd:CHL00130   4 TQGTFSFLPDLTDQQIEKQIQYAISKGWALNVEWTDD 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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