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Conserved domains on  [gi|42571459|ref|NP_973820|]
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PsbQ-like 2 [Arabidopsis thaliana]

Protein Classification

PLN02999 family protein( domain architecture ID 10010963)

PLN02999 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN02999 PLN02999
photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
1-159 1.70e-111

photosystem II oxygen-evolving enhancer 3 protein (PsbQ)


:

Pssm-ID: 178577  Cd Length: 190  Bit Score: 314.83  E-value: 1.70e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571459    1 MSSFTTTNTPPPYLLRKIYHRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYF 80
Cdd:PLN02999   1 MSSFTTTNTPPPYLLRKIYHRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYF 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 42571459   81 MPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEV 159
Cdd:PLN02999  81 MPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEL 159
 
Name Accession Description Interval E-value
PLN02999 PLN02999
photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
1-159 1.70e-111

photosystem II oxygen-evolving enhancer 3 protein (PsbQ)


Pssm-ID: 178577  Cd Length: 190  Bit Score: 314.83  E-value: 1.70e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571459    1 MSSFTTTNTPPPYLLRKIYHRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYF 80
Cdd:PLN02999   1 MSSFTTTNTPPPYLLRKIYHRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYF 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 42571459   81 MPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEV 159
Cdd:PLN02999  81 MPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEL 159
PsbQ pfam05757
Oxygen evolving enhancer protein 3 (PsbQ); This family consists of the plant specific oxygen ...
21-158 2.17e-27

Oxygen evolving enhancer protein 3 (PsbQ); This family consists of the plant specific oxygen evolving enhancer protein 3 (PsbQ). Photosystem II (PSII)1 is a pigment-protein complex, which consists of at least 25 different protein subunits, at present denoted PsbA-Z according to the genes that encode them. PsbQ plays an important role in the lumenal oxygen-evolving activity of PSII from higher plants and green algae.


Pssm-ID: 399050  Cd Length: 198  Bit Score: 101.35  E-value: 2.17e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571459    21 RRVNQPFSVVCCTGEPQQDIFTRRRTLtSLITFTVIGGATSSALAQE----------------------KWGTRSF---I 75
Cdd:pfam05757   6 VAVRRGGVVVRASQAAGPAQTSRRAVL-GLAAAGLAAGSLAAAVLAAaatpiklgpppppnggvpgtdnSDGARDFdlpL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571459    76 KEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVEN 155
Cdd:pfam05757  85 KEGFYLAPLGPAEAAARVKESAKDILALEDLIGKKAWPYVRNYLRLKSTYLRYDLNTLISAKPKDEKKPLLDLANKLFDN 164

                  ...
gi 42571459   156 MSE 158
Cdd:pfam05757 165 FEE 167
 
Name Accession Description Interval E-value
PLN02999 PLN02999
photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
1-159 1.70e-111

photosystem II oxygen-evolving enhancer 3 protein (PsbQ)


Pssm-ID: 178577  Cd Length: 190  Bit Score: 314.83  E-value: 1.70e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571459    1 MSSFTTTNTPPPYLLRKIYHRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYF 80
Cdd:PLN02999   1 MSSFTTTNTPPPYLLRKIYHRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYF 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 42571459   81 MPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEV 159
Cdd:PLN02999  81 MPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEL 159
PsbQ pfam05757
Oxygen evolving enhancer protein 3 (PsbQ); This family consists of the plant specific oxygen ...
21-158 2.17e-27

Oxygen evolving enhancer protein 3 (PsbQ); This family consists of the plant specific oxygen evolving enhancer protein 3 (PsbQ). Photosystem II (PSII)1 is a pigment-protein complex, which consists of at least 25 different protein subunits, at present denoted PsbA-Z according to the genes that encode them. PsbQ plays an important role in the lumenal oxygen-evolving activity of PSII from higher plants and green algae.


Pssm-ID: 399050  Cd Length: 198  Bit Score: 101.35  E-value: 2.17e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571459    21 RRVNQPFSVVCCTGEPQQDIFTRRRTLtSLITFTVIGGATSSALAQE----------------------KWGTRSF---I 75
Cdd:pfam05757   6 VAVRRGGVVVRASQAAGPAQTSRRAVL-GLAAAGLAAGSLAAAVLAAaatpiklgpppppnggvpgtdnSDGARDFdlpL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571459    76 KEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVEN 155
Cdd:pfam05757  85 KEGFYLAPLGPAEAAARVKESAKDILALEDLIGKKAWPYVRNYLRLKSTYLRYDLNTLISAKPKDEKKPLLDLANKLFDN 164

                  ...
gi 42571459   156 MSE 158
Cdd:pfam05757 165 FEE 167
PLN02729 PLN02729
PSII-Q subunit
64-159 1.17e-10

PSII-Q subunit


Pssm-ID: 215388  Cd Length: 220  Bit Score: 57.57  E-value: 1.17e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571459   64 LAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRN 143
Cdd:PLN02729  94 IVNEKTGTRSFLKKGIYMADIGTKGRMYRVKKYAFDLLALEDLIGPDTLNYVRKYLRLKSTFMYYDFDKLISAAPVDDKQ 173
                         90
                 ....*....|....*.
gi 42571459  144 DYVQAANELVENMSEV 159
Cdd:PLN02729 174 PLTDLANRLFDNFEKL 189
PLN02956 PLN02956
PSII-Q subunit
33-142 3.62e-03

PSII-Q subunit


Pssm-ID: 215515  Cd Length: 185  Bit Score: 36.34  E-value: 3.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571459   33 TGEPQQDIFTRRRTLTSLITFTVIGgATSSALAQEKWGTRSFikeKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSW 112
Cdd:PLN02956  33 TSRRPLRSISRRRGALAAVAGVLLA-QLEASFNVAIAFGFDL---RLTAPERTVEEAESGVRGHAENLLRVKALIESESW 108
                         90       100       110
                 ....*....|....*....|....*....|
gi 42571459  113 RYVIFYIRLKQAYLSQDLTNAMNILPESRR 142
Cdd:PLN02956 109 KEAQKALRRSASNLKQDLYAIIQAKPGKDR 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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