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Conserved domains on  [gi|42571171|ref|NP_973659|]
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Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

Protein Classification

J domain-containing protein( domain architecture ID 11420683)

J domain-containing protein with tetratricopeptide (TPR) repeats; similar to Homo sapiens DnaJ homolog subfamily C member 7 (DNAJC7) that acts as a co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor

CATH:  1.10.287.110|1.25.40.10
Gene Ontology:  GO:0006457|GO:0001671|GO:0051085|GO:0031072
PubMed:  15170475|9644977|35729039|8016869|30708253|10517866|10542335|9585179
SCOP:  4000605|3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 947-1028 1.28e-18

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


:

Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 80.59  E-value: 1.28e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171    947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:pfam00226    1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPG-------------------DPEAEEKFKEINEAYEVLSDPEKRAI 61


                   ..
gi 42571171   1027 YE 1028
Cdd:pfam00226   62 YD 63
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
550-656 1.01e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.18  E-value: 1.01e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  550 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 629
Cdd:COG0457    5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD----------DAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74

                         90       100
                 ....*....|....*....|....*..
gi 42571171  630 YIKAYMRAANCHLVLGELGSAVQYFNK 656
Cdd:COG0457   75 DAEALNNLGLALQALGRYEEALEDYDK 101
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
713-900 3.83e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.62  E-value: 3.83e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  713 ALSISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQTAERNFVSagiggttnvnglgstyhslivwrWNKISKSHFYLG 792
Cdd:COG0457   34 ALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA-----------------------LNNLGLALQALG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  793 NLEKALDILEKLQQveytcnenqeecrespaslvatiselLRYKNAAICFcNRAAANQALVQIADAIADCSLAMALDENY 872
Cdd:COG0457   91 RYEEALEDYDKALE--------------------------LDPDDAEALY-NLGLALLELGRYDEAIEAYERALELDPDD 143

                        170       180
                 ....*....|....*....|....*...
gi 42571171  873 TKAVSRRATLHEMIRDYDQAASDLQRLI 900
Cdd:COG0457  144 ADALYNLGIALEKLGRYEEALELLEKLE 171
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 947-1028 1.28e-18

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 80.59  E-value: 1.28e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171    947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:pfam00226    1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPG-------------------DPEAEEKFKEINEAYEVLSDPEKRAI 61


                   ..
gi 42571171   1027 YE 1028
Cdd:pfam00226   62 YD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 947-1068 6.87e-17

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 78.59  E-value: 6.87e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPG-------------------DPEAEEKFKEINEAYEVLSDPEKRAA 61

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 42571171 1027 Y-------ELEEEIRKARASRESYRSRKAAEASSPPYQTSRRYWKDSWR 1068
Cdd:COG0484   62 YdrfghaaELLLATELAESAAAEAAAAEAKEEAAEAGASEYEAIAEEAS 110
DnaJ smart00271
DnaJ molecular chaperone homology domain;
947-1023 4.50e-15

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 70.34  E-value: 4.50e-15
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42571171     947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQIlvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTK 1023
Cdd:smart00271    2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------------------KEEAEEKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 947-1020 2.16e-14

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 68.34  E-value: 2.16e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 42571171  947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSD 1020
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD-------------------DPEAEEKFKEINEAYEVLSD 55
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 947-1027 2.67e-13

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 72.63  E-value: 2.67e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171    947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevhKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:TIGR02349    1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--------------------KEAEEKFKEINEAYEVLSDPEKRAQ 60


                   .
gi 42571171   1027 Y 1027
Cdd:TIGR02349   61 Y 61
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 947-1028 7.30e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 71.42  E-value: 7.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAaqilvrsesegpwlKEileevhKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14298    6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN--------------KE------PDAEEKFKEISEAYAVLSDAEKRAQ 65


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14298   66 YD 67
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
550-656 1.01e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.18  E-value: 1.01e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  550 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 629
Cdd:COG0457    5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD----------DAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74

                         90       100
                 ....*....|....*....|....*..
gi 42571171  630 YIKAYMRAANCHLVLGELGSAVQYFNK 656
Cdd:COG0457   75 DAEALNNLGLALQALGRYEEALEDYDK 101
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 498-651 2.36e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 51.52  E-value: 2.36e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171    498 RHKKLQAVKKYRRKVnnslpKSNLNATMRNNQENQPVNTGQAKQDSGSTSMMPDVCEVWRL--------------RGNQA 563
Cdd:TIGR00990   63 RESKPKISKKERRKR-----KQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLseeerkkyaaklkeKGNKA 137

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171    564 YKNGYMSKAEECYTHGInsspskdnseySVKPLALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLV 643
Cdd:TIGR00990  138 YRNKDFNKAIKLYSKAI-----------ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206


                   ....*...
gi 42571171    644 LGELGSAV 651
Cdd:TIGR00990  207 LGKYADAL 214
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
713-900 3.83e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.62  E-value: 3.83e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  713 ALSISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQTAERNFVSagiggttnvnglgstyhslivwrWNKISKSHFYLG 792
Cdd:COG0457   34 ALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA-----------------------LNNLGLALQALG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  793 NLEKALDILEKLQQveytcnenqeecrespaslvatiselLRYKNAAICFcNRAAANQALVQIADAIADCSLAMALDENY 872
Cdd:COG0457   91 RYEEALEDYDKALE--------------------------LDPDDAEALY-NLGLALLELGRYDEAIEAYERALELDPDD 143

                        170       180
                 ....*....|....*....|....*...
gi 42571171  873 TKAVSRRATLHEMIRDYDQAASDLQRLI 900
Cdd:COG0457  144 ADALYNLGIALEKLGRYEEALELLEKLE 171
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 559-650 4.14e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 47.09  E-value: 4.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   559 RGNQAYKNGYMSKAEECYTHGINSSPSKdnseysvkplALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAA 638
Cdd:PLN03088    8 KAKEAFVDDDFALAVDLYTQAIDLDPNN----------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

                          90
                  ....*....|..
gi 42571171   639 NCHLVLGELGSA 650
Cdd:PLN03088   78 TACMKLEEYQTA 89
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 835-896 1.86e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 45.36  E-value: 1.86e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42571171    835 YKNAAIC------FCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDL 896
Cdd:TIGR00990  150 YSKAIECkpdpvyYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
TPR_1 pfam00515
Tetratricopeptide repeat;
597-630 1.22e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 1.22e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 42571171    597 ALCYGNRAAARISLGRLREAISDCEMAASLDPSY 630
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 602-659 1.92e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.46  E-value: 1.92e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 42571171  602 NRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNKCMK 659
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIE 62
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 947-1028 1.28e-18

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 80.59  E-value: 1.28e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171    947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:pfam00226    1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPG-------------------DPEAEEKFKEINEAYEVLSDPEKRAI 61


                   ..
gi 42571171   1027 YE 1028
Cdd:pfam00226   62 YD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 947-1068 6.87e-17

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 78.59  E-value: 6.87e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPG-------------------DPEAEEKFKEINEAYEVLSDPEKRAA 61

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 42571171 1027 Y-------ELEEEIRKARASRESYRSRKAAEASSPPYQTSRRYWKDSWR 1068
Cdd:COG0484   62 YdrfghaaELLLATELAESAAAEAAAAEAKEEAAEAGASEYEAIAEEAS 110
DnaJ smart00271
DnaJ molecular chaperone homology domain;
947-1023 4.50e-15

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 70.34  E-value: 4.50e-15
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 42571171     947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQIlvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTK 1023
Cdd:smart00271    2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------------------KEEAEEKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 947-1020 2.16e-14

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 68.34  E-value: 2.16e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 42571171  947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSD 1020
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD-------------------DPEAEEKFKEINEAYEVLSD 55
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
947-1052 5.92e-14

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 68.21  E-value: 5.92e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEIleevhkgADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:COG2214    6 DHYAVLGVPPDASLEEIRQAYRRLAKLLHPDR-----------GGELKAL-------AEELFQRLNEAYEVLSDPERRAE 67

                         90       100
                 ....*....|....*....|....*.
gi 42571171 1027 YELeeEIRKARASRESYRSRKAAEAS 1052
Cdd:COG2214   68 YDR--ELGQSGKGSASQPSAAAQRLA 91
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 947-1027 2.67e-13

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 72.63  E-value: 2.67e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171    947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevhKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:TIGR02349    1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--------------------KEAEEKFKEINEAYEVLSDPEKRAQ 60


                   .
gi 42571171   1027 Y 1027
Cdd:TIGR02349   61 Y 61
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 947-1028 7.30e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 71.42  E-value: 7.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAaqilvrsesegpwlKEileevhKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14298    6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN--------------KE------PDAEEKFKEISEAYAVLSDAEKRAQ 65


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14298   66 YD 67
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 947-1027 3.41e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 69.40  E-value: 3.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEileevhkgADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK10767    5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDR-----------NPGDKE--------AEEKFKEIKEAYEVLSDPQKRAA 65


                  .
gi 42571171  1027 Y 1027
Cdd:PRK10767   66 Y 66
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 947-1024 8.01e-12

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 61.17  E-value: 8.01e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42571171  947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrsesegpwlkeilEEVHKGADRLFKMIGEAYSVLSDPTKR 1024
Cdd:COG5407    1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDR-------------------NKGDPKAEERFKEINEAYELLSDAEKR 59
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
550-656 1.01e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.18  E-value: 1.01e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  550 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 629
Cdd:COG0457    5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD----------DAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74

                         90       100
                 ....*....|....*....|....*..
gi 42571171  630 YIKAYMRAANCHLVLGELGSAVQYFNK 656
Cdd:COG0457   75 DAEALNNLGLALQALGRYEEALEDYDK 101
PRK14280 PRK14280
molecular chaperone DnaJ;
947-1028 1.32e-11

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 67.44  E-value: 1.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESegpwlkeileevhkGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14280    5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPD------INKEE--------------GADEKFKEISEAYEVLSDDQKRAQ 64


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14280   65 YD 66
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 946-1028 1.60e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 67.22  E-value: 1.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   946 LDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevhKGADRLFKMIGEAYSVLSDPTKRS 1025
Cdd:PRK14292    2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--------------------KGAAEKFAQINEAYAVLSDAEKRA 61


                  ...
gi 42571171  1026 DYE 1028
Cdd:PRK14292   62 HYD 64
PRK14279 PRK14279
molecular chaperone DnaJ;
941-1039 2.82e-11

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 66.68  E-value: 2.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   941 KEGIHLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSD 1020
Cdd:PRK14279    4 REWVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG-------------------DPAAEERFKAVSEAHDVLSD 64

                          90
                  ....*....|....*....
gi 42571171  1021 PTKRSDYeleEEIRKARAS 1039
Cdd:PRK14279   65 PAKRKEY---DETRRLFAG 80
PRK14289 PRK14289
molecular chaperone DnaJ;
947-1028 5.87e-11

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 65.62  E-value: 5.87e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEileevhkgADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14289    6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDK-----------NPGDKE--------AEEKFKEAAEAYDVLSDPDKRSR 66


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14289   67 YD 68
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 947-1028 6.67e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 65.17  E-value: 6.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEileevhkgADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14294    5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDR-----------NPGDKE--------AEELFKEAAEAYEVLSDPKKRGI 65


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14294   66 YD 67
PRK14295 PRK14295
molecular chaperone DnaJ;
940-1028 7.48e-11

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 65.26  E-value: 7.48e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   940 SKEGIHLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilvrsesegpwlkeileeVHKG---ADRLFKMIGEAYS 1016
Cdd:PRK14295    3 TKDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPD----------------------ANKGdakAEERFKEISEAYD 60

                          90
                  ....*....|..
gi 42571171  1017 VLSDPTKRSDYE 1028
Cdd:PRK14295   61 VLSDEKKRKEYD 72
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
550-656 1.15e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.10  E-value: 1.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  550 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 629
Cdd:COG0457   39 PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD----------DAEALNNLGLALQALGRYEEALEDYDKALELDPD 108

                         90       100
                 ....*....|....*....|....*..
gi 42571171  630 YIKAYMRAANCHLVLGELGSAVQYFNK 656
Cdd:COG0457  109 DAEALYNLGLALLELGRYDEAIEAYER 135
PRK14297 PRK14297
molecular chaperone DnaJ;
947-1028 1.29e-10

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 64.42  E-value: 1.29e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14297    5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG-------------------NKEAEEKFKEINEAYQVLSDPQKKAQ 65


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14297   66 YD 67
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
596-872 1.45e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 62.72  E-value: 1.45e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  596 LALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNKCMKstssvcLDRRtTIEAA 675
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALE------LDPD-DAEAL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  676 EGLqqaqrvadftscASIFLEKRTPDGASDALvpiANALSISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQtAERNF 755
Cdd:COG0457   80 NNL------------GLALQALGRYEEALEDY---DKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALE-LDPDD 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  756 VSAgiggttnvnglgstyhslivwrWNKISKSHFYLGNLEKALDILEKLQQVEytcnENQEECRESPASLVATISELLRY 835
Cdd:COG0457  144 ADA----------------------LYNLGIALEKLGRYEEALELLEKLEAAA----LAALLAAALGEAALALAAAEVLL 197

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 42571171  836 KNAAICFCNRAAANQALVQIADAIADCSLAMALDENY 872
Cdd:COG0457  198 ALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 947-1028 1.56e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 64.44  E-value: 1.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilvrsesegpwlkeiLEEVHKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14277    6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPD-------------------LNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14277   67 YD 68
PRK14293 PRK14293
molecular chaperone DnaJ;
947-1028 5.60e-10

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 62.70  E-value: 5.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilvrsesegpwlkeileeVHK--GADRLFKMIGEAYSVLSDPTKR 1024
Cdd:PRK14293    4 DYYEILGVSRDADKDELKRAYRRLARKYHPD----------------------VNKepGAEDRFKEINRAYEVLSDPETR 61


                  ....
gi 42571171  1025 SDYE 1028
Cdd:PRK14293   62 ARYD 65
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 947-1028 1.23e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 61.38  E-value: 1.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrSESEgpwlkeileevhkGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14283    6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDV-------SEEE-------------GAEEKFKEISEAYAVLSDDEKRQR 65


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14283   66 YD 67
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 946-1028 1.46e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 61.40  E-value: 1.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   946 LDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAqilvrSESEgpwlkeileevhkgADRLFKMIGEAYSVLSDPTKRS 1025
Cdd:PRK14284    1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNP-----GDAE--------------AEKRFKEVSEAYEVLSDAQKRE 61


                  ...
gi 42571171  1026 DYE 1028
Cdd:PRK14284   62 SYD 64
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 947-1028 1.59e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 61.36  E-value: 1.59e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEileevhkgADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14281    4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDK-----------NPDNKE--------AEEHFKEVNEAYEVLSNDDKRRR 64


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14281   65 YD 66
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 947-1028 1.99e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 59.95  E-value: 1.99e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilvrsesegpwlkeileeVHK--GADRLFKMIGEAYSVLSDPTKR 1024
Cdd:PRK14299    5 DYYAILGVPKNASQDEIKKAFKKLARKYHPD----------------------VNKspGAEEKFKEINEAYTVLSDPEKR 62


                  ....
gi 42571171  1025 SDYE 1028
Cdd:PRK14299   63 RIYD 66
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 947-1028 2.05e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 60.87  E-value: 2.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESegpwlkeileevhkGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14276    5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPD------INKEP--------------GAEEKYKEVQEAYETLSDPQKRAA 64


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14276   65 YD 66
PRK10266 PRK10266
curved DNA-binding protein;
947-1028 2.57e-09

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 59.83  E-value: 2.57e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESEgpwlkeileevhkgADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK10266    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPD------VSKEPD--------------AEARFKEVAEAWEVLSDEQRRAE 64


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK10266   65 YD 66
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 947-1028 3.09e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 60.17  E-value: 3.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevhKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14291    4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--------------------PEAEEKFKEINEAYQVLSDPEKRKL 63


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14291   64 YD 65
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
550-656 4.58e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.48  E-value: 4.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  550 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 629
Cdd:COG0457   73 PDDAEALNNLGLALQALGRYEEALEDYDKALELDPD----------DAEALYNLGLALLELGRYDEAIEAYERALELDPD 142

                         90       100
                 ....*....|....*....|....*..
gi 42571171  630 YIKAYMRAANCHLVLGELGSAVQYFNK 656
Cdd:COG0457  143 DADALYNLGIALEKLGRYEEALELLEK 169
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 945-1028 1.30e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 58.21  E-value: 1.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   945 HLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEileevhkgADRLFKMIGEAYSVLSDPTKR 1024
Cdd:PRK14301    3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDR-----------NPDNPE--------AEQKFKEAAEAYEVLRDAEKR 63


                  ....
gi 42571171  1025 SDYE 1028
Cdd:PRK14301   64 ARYD 67
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 554-659 1.93e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 1.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  554 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYsvkplalcYGNRAAARISLGRLREAISDCEMAASLDPSYIKA 633
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDP--DNPEA--------FALLGEILLQLGDLDEAIVLLHEALELDPDEPEA 74

                         90       100
                 ....*....|....*....|....*.
gi 42571171  634 YMRAANCHLVLGELGSAVQYFNKCMK 659
Cdd:COG4783   75 RLNLGLALLKAGDYDEALALLEKALK 100
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 948-1032 2.04e-08

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 57.91  E-value: 2.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   948 FFLIMGVKTSDSAADIKKAYRKAALRHHPDKAaqilvrsesegpwlkeileevhkGADRLFKMIGEAYSVLSDPTKRSDY 1027
Cdd:PTZ00037   30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG-----------------------GDPEKFKEISRAYEVLSDPEKRKIY 86


                  ....*.
gi 42571171  1028 -ELEEE 1032
Cdd:PTZ00037   87 dEYGEE 92
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 554-659 3.71e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 3.71e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  554 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYsvkplalcYGNRAAARISLGRLREAISDCEMAASLDPSYIKA 633
Cdd:COG4235   18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADA--------LLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87

                         90       100
                 ....*....|....*....|....*.
gi 42571171  634 YMRAANCHLVLGELGSAVQYFNKCMK 659
Cdd:COG4235   88 LYLLGLAAFQQGDYAEAIAAWQKLLA 113
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 550-659 5.60e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.93  E-value: 5.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  550 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 629
Cdd:COG3914  109 PDNAEALFNLGNLLLALGRLEEALAALRRALALNPD----------FAEAYLNLGEALRRLGRLEEAIAALRRALELDPD 178

                         90       100       110
                 ....*....|....*....|....*....|
gi 42571171  630 YIKAYMRAANCHLVLGELGSAVQYFNKCMK 659
Cdd:COG3914  179 NAEALNNLGNALQDLGRLEEAIAAYRRALE 208
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 947-1028 1.16e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 55.32  E-value: 1.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseseGPWLKEILEEVhkgadrlFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14290    4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDL-----------HPGNKAEAEEK-------FKEISEAYEVLSDPQKRRQ 65


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14290   66 YD 67
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 550-659 1.20e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 1.20e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  550 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYsvkplalcYGNRAAARISLGRLREAISDCEMAASLDPS 629
Cdd:COG4783   35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP--DEPEA--------RLNLGLALLKAGDYDEALALLEKALKLDPE 104

                         90       100       110
                 ....*....|....*....|....*....|
gi 42571171  630 YIKAYMRAANCHLVLGELGSAVQYFNKCMK 659
Cdd:COG4783  105 HPEAYLRLARAYRALGRPDEAIAALEKALE 134
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 947-1029 1.21e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 55.06  E-value: 1.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESEgpwlkeileevhkgADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14278    4 DYYGLLGVSRNASDAEIKRAYRKLARELHPD------VNPDEE--------------AQEKFKEISVAYEVLSDPEKRRI 63


                  ...
gi 42571171  1027 YEL 1029
Cdd:PRK14278   64 VDL 66
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 947-1028 1.50e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 55.02  E-value: 1.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevhKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14300    4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA--------------------KDAEKKFKEINAAYDVLKDEQKRAA 63


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14300   64 YD 65
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 947-1028 1.67e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 54.80  E-value: 1.67e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAqilvrsesegpwlkeileEVHKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14282    5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHP------------------ENRKEAEQKFKEIQEAYEVLSDPQKRAM 66


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14282   67 YD 68
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 948-1028 1.68e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 54.61  E-value: 1.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   948 FFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrseSEGpwlkeileevHKGADRLFKMIGEAYSVLSDPTKRSDY 1027
Cdd:PRK14286    6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDK---------NKG----------NKESEEKFKEATEAYEILRDPKKRQAY 66


                  .
gi 42571171  1028 E 1028
Cdd:PRK14286   67 D 67
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 947-1028 1.69e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 54.61  E-value: 1.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKaaqilvrsesegpwlkeilEEVHKGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14285    4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDK-------------------NKGNKEAESIFKEATEAYEVLIDDNKRAQ 64


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14285   65 YD 66
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
947-1021 1.80e-07

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 49.41  E-value: 1.80e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 42571171  947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQILvrSESEgpwlKEIleevhkgADRLFKMIGEAYSVLSDP 1021
Cdd:COG1076    5 DAFELLGLPPDADDAELKRAYRKLQREHHPDRLAAGL--PEEE----QRL-------ALQKAAAINEAYETLKDP 66
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 947-1028 4.49e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 53.47  E-value: 4.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESEgpwlkeileevhkgADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14287    5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPD------VNKAPD--------------AEDKFKEVKEAYDTLSDPQKKAH 64


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14287   65 YD 66
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 554-685 7.40e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 7.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  554 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYSVkplalcygNRAAARISLGRLREAISDCEMAASLDPSYIKA 633
Cdd:COG2956  145 HAYCELAELYLEQGDYDEAIEALEKALKLDP--DCARALL--------LLAELYLEQGDYEEAIAALERALEQDPDYLPA 214

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 42571171  634 YMRAANCHLVLGELGSAVQYFNKCMKSTSSVCLDRRTT--IEAAEGLQQAQRVA 685
Cdd:COG2956  215 LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAdlLERKEGLEAALALL 268
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
563-663 8.51e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.24  E-value: 8.51e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  563 AYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAIsDCEMAASLDPSYIKAYMRAANCHL 642
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPD----------NADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLL 70

                         90       100
                 ....*....|....*....|.
gi 42571171  643 VLGELGSAVQYFNKCMKSTSS 663
Cdd:COG3063   71 ELGDYDEALAYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
596-656 1.37e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 50.68  E-value: 1.37e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 42571171  596 LALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNK 656
Cdd:COG4785   72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDR 132
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 498-651 2.36e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 51.52  E-value: 2.36e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171    498 RHKKLQAVKKYRRKVnnslpKSNLNATMRNNQENQPVNTGQAKQDSGSTSMMPDVCEVWRL--------------RGNQA 563
Cdd:TIGR00990   63 RESKPKISKKERRKR-----KQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLseeerkkyaaklkeKGNKA 137

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171    564 YKNGYMSKAEECYTHGInsspskdnseySVKPLALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLV 643
Cdd:TIGR00990  138 YRNKDFNKAIKLYSKAI-----------ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206


                   ....*...
gi 42571171    644 LGELGSAV 651
Cdd:TIGR00990  207 LGKYADAL 214
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
713-900 3.83e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.62  E-value: 3.83e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  713 ALSISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQTAERNFVSagiggttnvnglgstyhslivwrWNKISKSHFYLG 792
Cdd:COG0457   34 ALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA-----------------------LNNLGLALQALG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  793 NLEKALDILEKLQQveytcnenqeecrespaslvatiselLRYKNAAICFcNRAAANQALVQIADAIADCSLAMALDENY 872
Cdd:COG0457   91 RYEEALEDYDKALE--------------------------LDPDDAEALY-NLGLALLELGRYDEAIEAYERALELDPDD 143

                        170       180
                 ....*....|....*....|....*...
gi 42571171  873 TKAVSRRATLHEMIRDYDQAASDLQRLI 900
Cdd:COG0457  144 ADALYNLGIALEKLGRYEEALELLEKLE 171
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 563-660 4.06e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.03  E-value: 4.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  563 AYKNGYMSKAEECYTHGINSSPskDNSEYsvkplalcYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHL 642
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDP--NNPEL--------YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133

                         90
                 ....*....|....*...
gi 42571171  643 VLGELGSAVQYFNKCMKS 660
Cdd:COG5010  134 SLGQDDEAKAALQRALGT 151
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
781-985 5.66e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.85  E-value: 5.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  781 WNKISKSHFYLGNLEKALDILEKLQQVEytcnenqEECRESPASLVATISELLRYKNAAICF--------------CNRA 846
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELD-------PDDAEALYNLGLAYLRLGRYEEALADYeqaleldpddaealNNLG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  847 AANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISIlvkqsdKTKTPETSVDRASSRKEL 926
Cdd:COG0457   84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL------DPDDADALYNLGIALEKL 157

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 42571171  927 KQARQRLSVMEEKSKEGIHLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQILVR 985
Cdd:COG0457  158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
550-659 6.16e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.76  E-value: 6.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  550 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSkdnseysvkpLALCYGNRAAARISLGRLREAISDCEMAASLDPS 629
Cdd:COG4785   70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPD----------LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD 139

                         90       100       110
                 ....*....|....*....|....*....|
gi 42571171  630 YIKAYMRAANCHLVLGELGSAVQYFNKCMK 659
Cdd:COG4785  140 YAYAYLNRGIALYYLGRYELAIADLEKALE 169
djlA PRK09430
co-chaperone DjlA;
951-978 6.68e-06

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 49.04  E-value: 6.68e-06
                          10        20
                  ....*....|....*....|....*...
gi 42571171   951 IMGVKTSDSAADIKKAYRKAALRHHPDK 978
Cdd:PRK09430  205 VLGVSESDDDQEIKRAYRKLMSEHHPDK 232
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 550-702 9.66e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.61  E-value: 9.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  550 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYsvkplalcYGNRAAARISLGRLREAISDCEMAASLDPS 629
Cdd:COG3914  143 PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP--DNAEA--------LNNLGNALQDLGRLEEAIAAYRRALELDPD 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  630 YIKAY------MRAANCHLVLGELGSAVQYFNKCMKSTSSVCLDRRTTIEAAEGLQQAQRVADF-----TSCASIFLEKR 698
Cdd:COG3914  213 NADAHsnllfaLRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLvaaaaAPELPPPPNPR 292


                 ....
gi 42571171  699 TPDG 702
Cdd:COG3914  293 DPDR 296
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
837-902 1.15e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.08  E-value: 1.15e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 42571171  837 NAAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISI 902
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL 71
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 554-806 1.50e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 1.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  554 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPskDNSEYSVKpLALCYgnraaarISLGRLREAISDCEMAASLDPSYIKA 633
Cdd:COG2956   43 EAHLALGNLYRRRGEYDRAIRIHQKLLERDP--DRAEALLE-LAQDY-------LKAGLLDRAEELLEKLLELDPDDAEA 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  634 YMRAANCHLVLGELGSAVQYFNKcmkstssvcLDRRTTIEAAEGLQQAQrvadftscasIFLEKRTPDGASDALvpiANA 713
Cdd:COG2956  113 LRLLAEIYEQEGDWEKAIEVLER---------LLKLGPENAHAYCELAE----------LYLEQGDYDEAIEAL---EKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  714 LSISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQtAERNFVSAgiggttnVNGLGSTYHSlivwrwnkiskshfyLGN 793
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALE-QDPDYLPA-------LPRLAELYEK---------------LGD 227

                        250
                 ....*....|...
gi 42571171  794 LEKALDILEKLQQ 806
Cdd:COG2956  228 PEEALELLRKALE 240
PRK14288 PRK14288
molecular chaperone DnaJ;
944-1028 1.58e-05

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 48.53  E-value: 1.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   944 IHLDFFLIMGVKTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileevHKGADRLFKMIGEAYSVLSDPTK 1023
Cdd:PRK14288    1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG-------------------DKEAEEKFKLINEAYGVLSDEKK 61


                  ....*
gi 42571171  1024 RSDYE 1028
Cdd:PRK14288   62 RALYD 66
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 595-902 3.10e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 3.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  595 PLALCYGNRAAARISL--GRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNKcmkstssvcldrrtti 672
Cdd:COG2956    4 PVAAALGWYFKGLNYLlnGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQK---------------- 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  673 eaaeglqqaqrvadftscasifLEKRTPDgasdalvpianalsisscSDKLLQMKAEALFMIRRYKEVIELCENTLQTAE 752
Cdd:COG2956   68 ----------------------LLERDPD------------------RAEALLELAQDYLKAGLLDRAEELLEKLLELDP 107

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  753 RNFvsagiggttnvnglgSTYHSLIvwrwnkisKSHFYLGNLEKALDILEKLQQVeytcnenqeecrespaslvatisel 832
Cdd:COG2956  108 DDA---------------EALRLLA--------EIYEQEGDWEKAIEVLERLLKL------------------------- 139

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  833 lrYKNAAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISI 902
Cdd:COG2956  140 --GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ 207
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
839-933 3.98e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.06  E-value: 3.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  839 AICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLIsilvkqSDKTKTPETSVD 918
Cdd:COG4785  107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKAL------ELDPNDPERALW 180

                         90
                 ....*....|....*..
gi 42571171  919 R--ASSRKELKQARQRL 933
Cdd:COG4785  181 LylAERKLDPEKALALL 197
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 559-650 4.14e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 47.09  E-value: 4.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   559 RGNQAYKNGYMSKAEECYTHGINSSPSKdnseysvkplALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAA 638
Cdd:PLN03088    8 KAKEAFVDDDFALAVDLYTQAIDLDPNN----------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

                          90
                  ....*....|..
gi 42571171   639 NCHLVLGELGSA 650
Cdd:PLN03088   78 TACMKLEEYQTA 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 600-656 9.40e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.80  E-value: 9.40e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 42571171  600 YGNRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNK 656
Cdd:COG5010   57 ESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEK 113
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 938-1069 1.48e-04

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 45.41  E-value: 1.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  938 EKSKEGIHLDFFLIMGV---KTSDSAADIKKAYRKAALRHHPDKAAQilvrsesegpwlkeileEVHKGADRLFKMIGEA 1014
Cdd:COG5269   35 EDFKNWKKVDLYALLGLskyRTKAIPPQILKAHKKKVYKYHPDKTAA-----------------GGNKGCDEFFKLIQKA 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171 1015 YSVLSDPTKRSDYE---LEEEIRKARAS--------------RESYRSRKAAEASSPPYQTSRR-------YWK--DSWR 1068
Cdd:COG5269   98 REVLGDRKLRLQYDsndFDADVPPPRIYtpdeffevwepvfeREARFSKKQPVPSLGPSDSSLKeveefyeFWSnfDSWR 177


                 .
gi 42571171 1069 T 1069
Cdd:COG5269  178 T 178
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 835-896 1.86e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 45.36  E-value: 1.86e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 42571171    835 YKNAAIC------FCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDL 896
Cdd:TIGR00990  150 YSKAIECkpdpvyYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 947-1028 2.79e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 44.55  E-value: 2.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   947 DFFLIMGVKTSDSAADIKKAYRKAALRHHPDkaaqilVRSESegpwlkeileevhkGADRLFKMIGEAYSVLSDPTKRSD 1026
Cdd:PRK14296    5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPD------LNKSP--------------DAHDKMVEINEAADVLLDKDKRKQ 64


                  ..
gi 42571171  1027 YE 1028
Cdd:PRK14296   65 YD 66
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
550-659 4.14e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.98  E-value: 4.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  550 PDVCEVWRLRGNQAYKNGYMSKAEECYTHGINSSPSKDNSeysvkplalcYGNRAAARISLGRLREAISDCEMAASLDPS 629
Cdd:COG4785  104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA----------YLNRGIALYYLGRYELAIADLEKALELDPN 173

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 42571171  630 ----YIKAYMRA----------------ANCHLVLGELGSAVQYFNKCMK 659
Cdd:COG4785  174 dperALWLYLAErkldpekalallledwATAYLLQGDTEEARELFKLALA 223
TPR_1 pfam00515
Tetratricopeptide repeat;
597-630 1.22e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 1.22e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 42571171    597 ALCYGNRAAARISLGRLREAISDCEMAASLDPSY 630
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
606-653 1.28e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 1.28e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 42571171  606 ARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQY 653
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL 48
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
823-902 1.33e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.44  E-value: 1.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  823 ASLVATISELLRYKNAAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISI 902
Cdd:COG4785   57 ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 602-659 1.92e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.46  E-value: 1.92e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 42571171  602 NRAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNKCMK 659
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIE 62
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 603-656 2.07e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 42.29  E-value: 2.07e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 42571171  603 RAAARISLGRLREAISDCEMAASLDPSYIKAYMRAANCHLVLGELGSAVQYFNK 656
Cdd:COG3914   84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRR 137
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 781-903 2.61e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 2.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  781 WNKISKSHFYLGNLEKALDILEKLQQVEytcnenqeecRESPASLVAtISELLRYKNaaicfcnraaanqalvQIADAIA 860
Cdd:COG4235   20 WLLLGRAYLRLGRYDEALAAYEKALRLD----------PDNADALLD-LAEALLAAG----------------DTEEAEE 72

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 42571171  861 DCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISIL 903
Cdd:COG4235   73 LLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
LPA1 PLN03098
LOW PSII ACCUMULATION1; Provisional
 571-652 4.98e-03

LOW PSII ACCUMULATION1; Provisional


Pssm-ID: 215573 [Multi-domain]  Cd Length: 453  Bit Score: 40.64  E-value: 4.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171   571 KAEECYTHG-----INSSPSKDNSEYSVKPLALCYgNRAAARISLGRLREAISDCEMAASLDPSYIK---AYMRAANCHL 642
Cdd:PLN03098   45 RAPRRLLFGrssssPSSSPAKDGSEADVKTAEDAV-NLGLSLFSKGRVKDALAQFETALELNPNPDEaqaAYYNKACCHA 123

                          90
                  ....*....|
gi 42571171   643 VLGELGSAVQ 652
Cdd:PLN03098  124 YREEGKKAAD 133
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 554-749 5.20e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 5.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  554 EVWRLRGNQAYKNGYMSKAEECYTHGINSSPSKdnseysvkplALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKA 633
Cdd:COG2956  111 EALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN----------AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42571171  634 YMRAANCHLVLGELGSAVQYFNKCMKstssvcldrrttieaaeglQQAQRVADFTSCASIFLEKRTPDGASDALvpiANA 713
Cdd:COG2956  181 LLLLAELYLEQGDYEEAIAALERALE-------------------QDPDYLPALPRLAELYEKLGDPEEALELL---RKA 238

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 42571171  714 LSISSCSDKLLqMKAEALFMIRRYKEVIELCENTLQ 749
Cdd:COG2956  239 LELDPSDDLLL-ALADLLERKEGLEAALALLERQLR 273
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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