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Conserved domains on  [gi|41393067|ref|NP_958857|]
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cell division cycle protein 27 homolog [Danio rerio]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 12124078)

tetratricopeptide repeat (TPR) protein with an ANAPC3 (anaphase-promoting complex, subunit 3) domain, such as human cell division cycle protein 27 homolog and Dictyostelium discoideum anaphase-promoting complex/cyclosome (APC/C) subunit 3

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  16896351|21153002|10517866|30708253
SCOP:  4001344

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 532-731 1.59e-33

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 130.23  E-value: 1.59e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 532 WCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQE 611
Cdd:COG2956  11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 612 KFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEEL 691
Cdd:COG2956  91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 41393067 692 KQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 731
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 17-92 1.24e-21

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


:

Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 89.62  E-value: 1.24e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41393067    17 NHYAYRDAVFLAERLY-AEVHSEEALFLLATCYYRSGKAYKAYHLLKRH--SCTTPQCKYLPAKCCVELSKLAEGEQIL 92
Cdd:pfam12895   1 DQHQYKNAIFLAERLLaAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAklNGSSLGCRYLFAQCLLKLKKYDEALDAL 79
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 466-593 7.70e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 7.70e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 466 QIGRAHFELAEYMQAERIFSEVRRIESYRVEGMDIYSTTLWHLQK-DVALSALsKDLTDMDKNSPEPWCVVGNCFSLQRE 544
Cdd:COG4783   9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDlDEAIVLL-HEALELDPDEPEARLNLGLALLKAGD 87

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 41393067 545 HDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLN 593
Cdd:COG4783  88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 532-731 1.59e-33

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 130.23  E-value: 1.59e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 532 WCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQE 611
Cdd:COG2956  11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 612 KFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEEL 691
Cdd:COG2956  91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 41393067 692 KQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 731
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 17-92 1.24e-21

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 89.62  E-value: 1.24e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41393067    17 NHYAYRDAVFLAERLY-AEVHSEEALFLLATCYYRSGKAYKAYHLLKRH--SCTTPQCKYLPAKCCVELSKLAEGEQIL 92
Cdd:pfam12895   1 DQHQYKNAIFLAERLLaAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAklNGSSLGCRYLFAQCLLKLKKYDEALDAL 79
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 542-743 1.16e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.20  E-value: 1.16e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   542 QREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGL------------------ 603
Cdd:TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALatilieagefeeaekhad 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   604 ----------------GMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLC 667
Cdd:TIGR02917 252 allkkapnsplahylkALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 41393067   668 KFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDK 743
Cdd:TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 466-593 7.70e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 7.70e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 466 QIGRAHFELAEYMQAERIFSEVRRIESYRVEGMDIYSTTLWHLQK-DVALSALsKDLTDMDKNSPEPWCVVGNCFSLQRE 544
Cdd:COG4783   9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDlDEAIVLL-HEALELDPDEPEARLNLGLALLKAGD 87

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 41393067 545 HDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLN 593
Cdd:COG4783  88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
TPR_12 pfam13424
Tetratricopeptide repeat;
598-663 7.34e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.38  E-value: 7.34e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 41393067   598 NAWYGLGMIYYKQEKFNLAEIHFKKAFSI--------NPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPK 663
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 597-629 5.17e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.59  E-value: 5.17e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 41393067    597 YNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 629
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 544-659 6.39e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.70  E-value: 6.39e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 544 EHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYnawyglgmiyykQEKF-NLAEIH--- 619
Cdd:cd24142  15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG------------YEKYlYLGQLSgge 82

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 41393067 620 -----FKKAFSInpqssvLLCHIGVVQHALKKSDHALETLNRAIS 659
Cdd:cd24142  83 ealqyYEKGIEI------LEEELQALQAASAEAEEEAEELKRKLS 121
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 532-731 1.59e-33

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 130.23  E-value: 1.59e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 532 WCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQE 611
Cdd:COG2956  11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 612 KFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEEL 691
Cdd:COG2956  91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 41393067 692 KQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 731
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
523-693 4.10e-33

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 128.20  E-value: 4.10e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 523 DMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYG 602
Cdd:COG0457   2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 603 LGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYK 682
Cdd:COG0457  82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                       170
                ....*....|.
gi 41393067 683 AALQELEELKQ 693
Cdd:COG0457 162 EALELLEKLEA 172
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
556-722 3.79e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 125.50  E-value: 3.79e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 556 IQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLC 635
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 636 HIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQT 715
Cdd:COG0457  81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160


                ....*..
gi 41393067 716 HLALMNF 722
Cdd:COG0457 161 EEALELL 167
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 509-730 1.90e-30

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 121.37  E-value: 1.90e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 509 QKDVALSALsKDLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRN 588
Cdd:COG2956  23 QPDKAIDLL-EEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 589 AIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCK 668
Cdd:COG2956 102 LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL 181

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 41393067 669 FHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDP 730
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
523-691 5.42e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 104.70  E-value: 5.42e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 523 DMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYG 602
Cdd:COG0457  36 ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYN 115

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 603 LGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYK 682
Cdd:COG0457 116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195


                ....*....
gi 41393067 683 AALQELEEL 691
Cdd:COG0457 196 LLALLLALE 204
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 470-691 7.09e-25

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 105.20  E-value: 7.09e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 470 AHFELA-------EYMQAERIFSEVRRIESYRVEGM----DIYsttlwHLQKDV--ALSALSKdLTDMDKNSPEPWCVVG 536
Cdd:COG2956  44 AHLALGnlyrrrgEYDRAIRIHQKLLERDPDRAEALlelaQDY-----LKAGLLdrAEELLEK-LLELDPDDAEALRLLA 117

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 537 NCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLA 616
Cdd:COG2956 118 EIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEA 197

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 41393067 617 EIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLcKFHRASILFANEKYKAALQELEEL 691
Cdd:COG2956 198 IAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
590-751 2.86e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 102.39  E-value: 2.86e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 590 IRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKF 669
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 670 HRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDD 749
Cdd:COG0457  81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160


                ..
gi 41393067 750 DE 751
Cdd:COG0457 161 EE 162
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 542-694 3.12e-23

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 105.08  E-value: 3.12e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 542 QREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFK 621
Cdd:COG3914  91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 41393067 622 KAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQI 694
Cdd:COG3914 171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAAL 243
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 536-664 3.99e-22

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 92.95  E-value: 3.99e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 536 GNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNL 615
Cdd:COG4783  11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 41393067 616 AEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKN 664
Cdd:COG4783  91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 17-92 1.24e-21

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 89.62  E-value: 1.24e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41393067    17 NHYAYRDAVFLAERLY-AEVHSEEALFLLATCYYRSGKAYKAYHLLKRH--SCTTPQCKYLPAKCCVELSKLAEGEQIL 92
Cdd:pfam12895   1 DQHQYKNAIFLAERLLaAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAklNGSSLGCRYLFAQCLLKLKKYDEALDAL 79
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 599-731 1.32e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 88.71  E-value: 1.32e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 599 AWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFAN 678
Cdd:COG4783   6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 41393067 679 EKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 731
Cdd:COG4783  86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 563-698 1.46e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 88.33  E-value: 1.46e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 563 AYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQH 642
Cdd:COG4783   4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 41393067 643 ALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKE 698
Cdd:COG4783  84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 461-719 2.43e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 91.71  E-value: 2.43e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 461 GWVLgqIGRAHFELAEYMQAERIFSEVRRIESYRVEgmdIYST--TLWHLQKDV--ALSALSKdLTDMDKNSPEPWCVVG 536
Cdd:COG2956  10 GWYF--KGLNYLLNGQPDKAIDLLEEALELDPETVE---AHLAlgNLYRRRGEYdrAIRIHQK-LLERDPDRAEALLELA 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 537 NCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLA 616
Cdd:COG2956  84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 617 EIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVP 696
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243

                       250       260
                ....*....|....*....|...
gi 41393067 697 kESLVYFLIGKVYKKLGQTHLAL 719
Cdd:COG2956 244 -SDDLLLALADLLERKEGLEAAL 265
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 581-704 1.15e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 85.44  E-value: 1.15e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 581 KALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISI 660
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 41393067 661 DPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFL 704
Cdd:COG4235  81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 554-705 2.57e-17

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 86.59  E-value: 2.57e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 554 RAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVL 633
Cdd:COG3914  69 AAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA 148

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 41393067 634 LCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLI 705
Cdd:COG3914 149 YLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
459-691 5.30e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.21  E-value: 5.30e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 459 NTGWVLGQIGRAHFELAEYMQAERIFSEVRRIESYRVEGMDIYSTTLWHLQK-DVALSALSKDLtDMDKNSPEPWCVVGN 537
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQAL-ELDPDDAEALNNLGL 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 538 CFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAE 617
Cdd:COG0457  85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 41393067 618 IHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEEL 691
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 516-630 9.45e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 77.54  E-value: 9.45e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 516 ALSKDLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKR 595
Cdd:COG4783  25 ALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE 104

                        90       100       110
                ....*....|....*....|....*....|....*
gi 41393067 596 HYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQS 630
Cdd:COG4783 105 HPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 527-631 2.04e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 76.20  E-value: 2.04e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 527 NSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMI 606
Cdd:COG4235  15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                        90       100
                ....*....|....*....|....*
gi 41393067 607 YYKQEKFNLAEIHFKKAFSINPQSS 631
Cdd:COG4235  95 AFQQGDYAEAIAAWQKLLALLPADA 119
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
536-686 4.79e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 78.03  E-value: 4.79e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 536 GNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNL 615
Cdd:COG4785  80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 41393067 616 AEIHFKKAFSINPQS--SVLLCHIgvvQHALKKSDHALETLNRAIsidPKNPLCKFHRASilfANEKYKAALQ 686
Cdd:COG4785 160 AIADLEKALELDPNDpeRALWLYL---AERKLDPEKALALLLEDW---ATAYLLQGDTEE---ARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 548-674 5.59e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 75.04  E-value: 5.59e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 548 AIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSIN 627
Cdd:COG4235   2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 41393067 628 PQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASI 674
Cdd:COG4235  82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 541-731 3.47e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.65  E-value: 3.47e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 541 LQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHF 620
Cdd:COG3914  22 AAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALY 101

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 621 KKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESL 700
Cdd:COG3914 102 RRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE 181

                       170       180       190
                ....*....|....*....|....*....|.
gi 41393067 701 VYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 731
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 525-637 9.54e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 78.11  E-value: 9.54e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 525 DKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLG 604
Cdd:COG3914 108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                        90       100       110
                ....*....|....*....|....*....|...
gi 41393067 605 MIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHI 637
Cdd:COG3914 188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 542-743 1.16e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.20  E-value: 1.16e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   542 QREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGL------------------ 603
Cdd:TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALatilieagefeeaekhad 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   604 ----------------GMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLC 667
Cdd:TIGR02917 252 allkkapnsplahylkALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 41393067   668 KFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDK 743
Cdd:TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
538-628 1.60e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 69.81  E-value: 1.60e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 538 CFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGcFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAE 617
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                        90
                ....*....|.
gi 41393067 618 IHFKKAFSINP 628
Cdd:COG3063  80 AYLERALELDP 90
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 554-662 1.88e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 71.53  E-value: 1.88e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 554 RAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVL 633
Cdd:COG5010  45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124

                        90       100
                ....*....|....*....|....*....
gi 41393067 634 LCHIGVVQHALKKSDHALETLNRAISIDP 662
Cdd:COG5010 125 YSNLAALLLSLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
599-742 3.42e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 72.64  E-value: 3.42e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 599 AWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFAN 678
Cdd:COG4785  75 LYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41393067 679 EKYKAALQELEELKQIVPKESLVYFLIGKVYKKLG-QTHLALMNFSWAMDL----DPKGANNQIKEAID 742
Cdd:COG4785 155 GRYELAIADLEKALELDPNDPERALWLYLAERKLDpEKALALLLEDWATAYllqgDTEEARELFKLALA 223
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 537-628 4.89e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 70.37  E-value: 4.89e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 537 NCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLA 616
Cdd:COG5010  62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141

                        90
                ....*....|..
gi 41393067 617 EIHFKKAFSINP 628
Cdd:COG5010 142 KAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 548-734 6.94e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 75.89  E-value: 6.94e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   548 AIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSIN 627
Cdd:TIGR02917 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   628 PQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGK 707
Cdd:TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGD 711

                         170       180
                  ....*....|....*....|....*..
gi 41393067   708 VYKKLGQTHLALMNFSWAMDLDPKGAN 734
Cdd:TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQN 738
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
606-697 8.12e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 67.50  E-value: 8.12e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 606 IYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALEtLNRAISIDPKNPLCKFHRASILFANEKYKAAL 685
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                        90
                ....*....|..
gi 41393067 686 QELEELKQIVPK 697
Cdd:COG3063  80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 554-696 8.73e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 69.60  E-value: 8.73e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 554 RAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVL 633
Cdd:COG5010  11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 41393067 634 LCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVP 696
Cdd:COG5010  91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
627-731 1.84e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.55  E-value: 1.84e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 627 NPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIG 706
Cdd:COG4785  69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG 148

                        90       100
                ....*....|....*....|....*
gi 41393067 707 KVYKKLGQTHLALMNFSWAMDLDPK 731
Cdd:COG4785 149 IALYYLGRYELAIADLEKALELDPN 173
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 639-730 7.87e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 61.13  E-value: 7.87e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 639 VVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLA 718
Cdd:COG5010  62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141

                        90
                ....*....|..
gi 41393067 719 LMNFSWAMDLDP 730
Cdd:COG5010 142 KAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
640-731 3.44e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.49  E-value: 3.44e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 640 VQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQeLEELKQIVPKESLVYFLIGKVYKKLGQTHLAL 719
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                        90
                ....*....|..
gi 41393067 720 MNFSWAMDLDPK 731
Cdd:COG3063  80 AYLERALELDPS 91
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 464-633 6.51e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 6.51e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 464 LGQIGRAHFELAEYMQAERIFSEVRRIESYRVEGMDIYSTTLWHLQKDV-ALSALSKdLTDMDKNSPEPWCVVGNCFSLQ 542
Cdd:COG3914  81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEeALAALRR-ALALNPDFAEAYLNLGEALRRL 159

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 543 REHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKK 622
Cdd:COG3914 160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL 239

                       170
                ....*....|.
gi 41393067 623 AFSINPQSSVL 633
Cdd:COG3914 240 LAALARGPSEL 250
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 466-593 7.70e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 7.70e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 466 QIGRAHFELAEYMQAERIFSEVRRIESYRVEGMDIYSTTLWHLQK-DVALSALsKDLTDMDKNSPEPWCVVGNCFSLQRE 544
Cdd:COG4783   9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDlDEAIVLL-HEALELDPDEPEARLNLGLALLKAGD 87

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 41393067 545 HDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLN 593
Cdd:COG4783  88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 468-731 4.33e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 60.10  E-value: 4.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   468 GRAHFELAEYMQAERIFSEVRRIESYRVEGMDIYSTTLWHL-QKDVALSALSkDLTDMDKNSPEPWCVVGNCFSLQREHD 546
Cdd:TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLgRVDEAIATLS-PALGLDPDDPAALSLLGEAYLALGDFE 380

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   547 IAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSI 626
Cdd:TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   627 NPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIG 706
Cdd:TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540

                         250       260
                  ....*....|....*....|....*
gi 41393067   707 KVYKKLGQTHLALMNFSWAMDLDPK 731
Cdd:TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQ 565
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 548-751 5.36e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 59.71  E-value: 5.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   548 AIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFN--LAEIHFKKAFS 625
Cdd:TIGR02917  41 AIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQqvLDELPGKTLLD 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   626 iNPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLI 705
Cdd:TIGR02917 121 -DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 41393067   706 GKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDDDE 751
Cdd:TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 563-751 7.03e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.24  E-value: 7.03e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 563 AYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQH 642
Cdd:COG3914  10 AALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQ 89

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 643 ALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNF 722
Cdd:COG3914  90 ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 41393067 723 SWAMDLDPKGAN------------NQIKEAID--KRYL---PDDDE 751
Cdd:COG3914 170 RRALELDPDNAEalnnlgnalqdlGRLEEAIAayRRALeldPDNAD 215
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 580-665 4.69e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.92  E-value: 4.69e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 580 EKALGCFRNAIRLNKRHY---NAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSSVL---LCHIGVVQHALKKSDHALET 653
Cdd:COG1729  10 DEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKARAT 89

                        90
                ....*....|..
gi 41393067 654 LNRAISIDPKNP 665
Cdd:COG1729  90 LEELIKKYPDSE 101
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 508-701 2.58e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 54.32  E-value: 2.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   508 LQKDVALS-ALSKDLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCF 586
Cdd:TIGR02917 579 GKGQLKKAlAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   587 RNAIRLNKRHYNAWYGL----------------------------------GMIYYKQEKFNLAEIHFKKAFSINPqSSV 632
Cdd:TIGR02917 659 KRALELKPDNTEAQIGLaqlllaakrtesakkiakslqkqhpkaalgfeleGDLYLRQKDYPAAIQAYRKALKRAP-SSQ 737

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 41393067   633 LLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLV 701
Cdd:TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806
TPR_12 pfam13424
Tetratricopeptide repeat;
598-663 7.34e-07

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.38  E-value: 7.34e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 41393067   598 NAWYGLGMIYYKQEKFNLAEIHFKKAFSI--------NPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPK 663
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_1 pfam00515
Tetratricopeptide repeat;
597-629 1.21e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.49  E-value: 1.21e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 41393067   597 YNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 629
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 513-594 1.35e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.80  E-value: 1.35e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 513 ALSALSKDLtDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRL 592
Cdd:COG5010  73 SLALLEQAL-QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151


                ..
gi 41393067 593 NK 594
Cdd:COG5010 152 SP 153
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 597-629 5.17e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.59  E-value: 5.17e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 41393067    597 YNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 629
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
511-597 6.03e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.16  E-value: 6.03e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 511 DVALSALSKdLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFfTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAI 590
Cdd:COG3063   9 EEAEEYYEK-ALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86


                ....*..
gi 41393067 591 RLNKRHY 597
Cdd:COG3063  87 ELDPSAL 93
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 599-629 3.60e-05

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 41.35  E-value: 3.60e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 41393067   599 AWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 629
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 541-727 4.13e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 46.90  E-value: 4.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   541 LQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQEKFNLAEIHF 620
Cdd:TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   621 KKAFSINPQSSVLLCHIGVVQHALKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQ------ELEelKQI 694
Cdd:TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEkfdtaiELE--KET 500

                         170       180       190
                  ....*....|....*....|....*....|...
gi 41393067   695 VPKESLVYFLIGKvykklgqthlALMNFSWAMD 727
Cdd:TIGR00990 501 KPMYMNVLPLINK----------ALALFQWKQD 523
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 605-697 5.28e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.06  E-value: 5.28e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 605 MIYYKQEKFNLAEIHFKKAFSINPQSSVL---LCHIGVVQHALKKSDHALETLNRAISIDPKNPL---CKFHRASILFAN 678
Cdd:COG1729   1 KALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80

                        90
                ....*....|....*....
gi 41393067 679 EKYKAALQELEELKQIVPK 697
Cdd:COG1729  81 GDYDKARATLEELIKKYPD 99
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 544-659 6.39e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.70  E-value: 6.39e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 544 EHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRHYnawyglgmiyykQEKF-NLAEIH--- 619
Cdd:cd24142  15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG------------YEKYlYLGQLSgge 82

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 41393067 620 -----FKKAFSInpqssvLLCHIGVVQHALKKSDHALETLNRAIS 659
Cdd:cd24142  83 ealqyYEKGIEI------LEEELQALQAASAEAEEEAEELKRKLS 121
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 513-593 3.99e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 3.99e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 513 ALSALSKdLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSFAYAYTLLGHELVPTEELEKALGCFRNAIRL 592
Cdd:COG4235  36 ALAAYEK-ALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114


                .
gi 41393067 593 N 593
Cdd:COG4235 115 L 115
TPR_8 pfam13181
Tetratricopeptide repeat;
597-629 4.81e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 38.15  E-value: 4.81e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 41393067   597 YNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 629
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
661-734 5.80e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.21  E-value: 5.80e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 41393067 661 DPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGAN 734
Cdd:COG4785  69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAY 142
TPR_1 pfam00515
Tetratricopeptide repeat;
532-562 6.10e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 6.10e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 41393067   532 WCVVGNCFSLQREHDIAIKFFTRAIQVDPSF 562
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 645-731 7.43e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 7.43e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 645 KKSDHALETLNRAISIDPKNPL---CKFHRASILFANEKYKAALQELEELKQIVPKESLV---YFLIGKVYKKLGQTHLA 718
Cdd:COG1729   7 GDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKA 86

                        90
                ....*....|...
gi 41393067 719 LMNFSWAMDLDPK 731
Cdd:COG1729  87 RATLEELIKKYPD 99
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 604-719 9.82e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 42.20  E-value: 9.82e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067 604 GMIYYKQEKFNLAEIHFKKAFSINPQSsvLLCHIGVVQ--HALKKSDHALETLNRAISIDPKNPL-CKFHRASILFANEK 680
Cdd:COG3071  23 GLLALAEGRYARAEKLLSKAAEHSEAP--LLAYLLAARaaQALGDYERRDEYLAQALELAPEAELaVLLTRAELLLDQGQ 100

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 41393067 681 YKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLAL 719
Cdd:COG3071 101 AEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELL 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 517-692 1.01e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   517 LSKDLTDMDKNSPEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSfAYAYTLLGHELVPTEELEKALGCFRNAIRLNKRH 596
Cdd:TIGR02917 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   597 YNAWYGLGMIYYKQEKFNLAEIHF---------------------------------KKAFSINPQSSVLLCHIGVVQHA 643
Cdd:TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYqtvvkkapdnavvlnnlawlylelkdpraleyaERALKLAPNIPAILDTLGWLLVE 849

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 41393067   644 LKKSDHALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELK 692
Cdd:TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 674-734 1.10e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 1.10e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 41393067 674 ILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGAN 734
Cdd:COG5010  63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123
TPR_11 pfam13414
TPR repeat;
570-610 1.23e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.07  E-value: 1.23e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 41393067   570 GHELVPTEELEKALGCFRNAIRLNKRHYNAWYGLGMIYYKQ 610
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
TPR_12 pfam13424
Tetratricopeptide repeat;
563-629 1.48e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.14  E-value: 1.48e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 41393067   563 AYAYTLLGHELVPTEELEKALGCFRNAIRLNKR--------HYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQ 629
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllgpdhplTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 669-742 1.88e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 1.88e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 41393067 669 FHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAID 742
Cdd:COG2956  12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQD 85
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 568-631 1.90e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.32  E-value: 1.90e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 41393067   568 LLGHELVPTEELEKALGCFRNAIRLNKR---HYNAWYGLGMIYYKQEKFNLAEIHFKKAFSINPQSS 631
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_19 pfam14559
Tetratricopeptide repeat;
650-708 2.32e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 2.32e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 41393067   650 ALETLNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKV 708
Cdd:pfam14559   7 ALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 577-731 2.63e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.12  E-value: 2.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41393067   577 EELEKALGCFRNAIRLNKRHYNAWYGL---GMIYYKQEKFNLAEIHFKKAFSINPQSSVLLCHIGVVQHALKKSDHALET 653
Cdd:TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALnlrGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 41393067   654 LNRAISIDPKNPLCKFHRASILFANEKYKAALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPK 731
Cdd:TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465
TPR_1 pfam00515
Tetratricopeptide repeat;
634-664 3.06e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 3.06e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 41393067   634 LCHIGVVQHALKKSDHALETLNRAISIDPKN 664
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 529-562 5.12e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 5.12e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 41393067    529 PEPWCVVGNCFSLQREHDIAIKFFTRAIQVDPSF 562
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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