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Conserved domains on  [gi|41054589|ref|NP_955883|]
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protein Red [Danio rerio]

Protein Classification

RED_N and RED_C domain-containing protein( domain architecture ID 10544693)

RED_N and RED_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RED_N pfam07808
RED-like protein N-terminal region; This family contains sequences that are similar to the ...
 84-295 7.11e-113

RED-like protein N-terminal region; This family contains sequences that are similar to the N-terminal region of Red protein. This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region, suggesting that these proteins are expressed in the nucleus. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated of that the protein self-aggregates extremely efficiently.


:

Pssm-ID: 462273  Cd Length: 227  Bit Score: 334.68  E-value: 7.11e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589    84 LRQQEMERERELAEKYRDRARERRDGVNKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLV 163
Cdd:pfam07808   1 LKKQEEDKLAELAPKYRDRAKERREGANPDYQNEDPVSTTSAYRAVAPDAKSGLDAAERRKQMIQESKFLGGDMEHTHLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589   164 KGLDFALLQKVRAEITSKEREEEDMIEKV-------QKEVKKDEDPEQKIEFKTRMGRNIYRN-VFKGRQLERNELFLPG 235
Cdd:pfam07808  81 KGLDYALLQKVRSEITKKEDEQEEEEEKLleqkaeaKLQKEKEKKEEEEIKFKTRLAKSIYRQiLFKQKKPERNELFLPG 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589   236 RMAYVVDLEDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGTRN 295
Cdd:pfam07808 161 RMAYVIDLEDEYADSDIPTTLIRSKADCPNAESTTTLTTNDIVINKLAQILSYLRQGSSG 220
RED_C pfam07807
RED-like protein C-terminal region; This family contains sequences that are similar to the ...
 436-540 1.72e-56

RED-like protein C-terminal region; This family contains sequences that are similar to the C-terminal region of Red protein. This and related proteins are thought to be localized to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently.


:

Pssm-ID: 462272  Cd Length: 112  Bit Score: 184.89  E-value: 1.72e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589   436 YAECYPATM--DDLAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSDYMNNKEALPKAAFQYGIKMSEGRKTRRFKET 513
Cdd:pfam07807   1 YAECYPGMAeyNDALVDSDDEADYSKMDMGNKKGPVGRWDFDTQEEYSSYMEKKEALPKAAFQYGVKMADGRKTRRQGEK 80

                          90       100
                  ....*....|....*....|....*..
gi 41054589   514 NEKAELDRQWKKISAIIEKRKKMEADG 540
Cdd:pfam07807  81 DEKAKLDRELQKIQNIIQKRKGGGGGA 107
 
Name Accession Description Interval E-value
RED_N pfam07808
RED-like protein N-terminal region; This family contains sequences that are similar to the ...
 84-295 7.11e-113

RED-like protein N-terminal region; This family contains sequences that are similar to the N-terminal region of Red protein. This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region, suggesting that these proteins are expressed in the nucleus. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated of that the protein self-aggregates extremely efficiently.


Pssm-ID: 462273  Cd Length: 227  Bit Score: 334.68  E-value: 7.11e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589    84 LRQQEMERERELAEKYRDRARERRDGVNKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLV 163
Cdd:pfam07808   1 LKKQEEDKLAELAPKYRDRAKERREGANPDYQNEDPVSTTSAYRAVAPDAKSGLDAAERRKQMIQESKFLGGDMEHTHLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589   164 KGLDFALLQKVRAEITSKEREEEDMIEKV-------QKEVKKDEDPEQKIEFKTRMGRNIYRN-VFKGRQLERNELFLPG 235
Cdd:pfam07808  81 KGLDYALLQKVRSEITKKEDEQEEEEEKLleqkaeaKLQKEKEKKEEEEIKFKTRLAKSIYRQiLFKQKKPERNELFLPG 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589   236 RMAYVVDLEDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGTRN 295
Cdd:pfam07808 161 RMAYVIDLEDEYADSDIPTTLIRSKADCPNAESTTTLTTNDIVINKLAQILSYLRQGSSG 220
RED_C pfam07807
RED-like protein C-terminal region; This family contains sequences that are similar to the ...
 436-540 1.72e-56

RED-like protein C-terminal region; This family contains sequences that are similar to the C-terminal region of Red protein. This and related proteins are thought to be localized to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently.


Pssm-ID: 462272  Cd Length: 112  Bit Score: 184.89  E-value: 1.72e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589   436 YAECYPATM--DDLAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSDYMNNKEALPKAAFQYGIKMSEGRKTRRFKET 513
Cdd:pfam07807   1 YAECYPGMAeyNDALVDSDDEADYSKMDMGNKKGPVGRWDFDTQEEYSSYMEKKEALPKAAFQYGVKMADGRKTRRQGEK 80

                          90       100
                  ....*....|....*....|....*..
gi 41054589   514 NEKAELDRQWKKISAIIEKRKKMEADG 540
Cdd:pfam07807  81 DEKAKLDRELQKIQNIIQKRKGGGGGA 107
 
Name Accession Description Interval E-value
RED_N pfam07808
RED-like protein N-terminal region; This family contains sequences that are similar to the ...
 84-295 7.11e-113

RED-like protein N-terminal region; This family contains sequences that are similar to the N-terminal region of Red protein. This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region, suggesting that these proteins are expressed in the nucleus. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated of that the protein self-aggregates extremely efficiently.


Pssm-ID: 462273  Cd Length: 227  Bit Score: 334.68  E-value: 7.11e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589    84 LRQQEMERERELAEKYRDRARERRDGVNKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLV 163
Cdd:pfam07808   1 LKKQEEDKLAELAPKYRDRAKERREGANPDYQNEDPVSTTSAYRAVAPDAKSGLDAAERRKQMIQESKFLGGDMEHTHLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589   164 KGLDFALLQKVRAEITSKEREEEDMIEKV-------QKEVKKDEDPEQKIEFKTRMGRNIYRN-VFKGRQLERNELFLPG 235
Cdd:pfam07808  81 KGLDYALLQKVRSEITKKEDEQEEEEEKLleqkaeaKLQKEKEKKEEEEIKFKTRLAKSIYRQiLFKQKKPERNELFLPG 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589   236 RMAYVVDLEDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGTRN 295
Cdd:pfam07808 161 RMAYVIDLEDEYADSDIPTTLIRSKADCPNAESTTTLTTNDIVINKLAQILSYLRQGSSG 220
RED_C pfam07807
RED-like protein C-terminal region; This family contains sequences that are similar to the ...
 436-540 1.72e-56

RED-like protein C-terminal region; This family contains sequences that are similar to the C-terminal region of Red protein. This and related proteins are thought to be localized to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently.


Pssm-ID: 462272  Cd Length: 112  Bit Score: 184.89  E-value: 1.72e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41054589   436 YAECYPATM--DDLAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSDYMNNKEALPKAAFQYGIKMSEGRKTRRFKET 513
Cdd:pfam07807   1 YAECYPGMAeyNDALVDSDDEADYSKMDMGNKKGPVGRWDFDTQEEYSSYMEKKEALPKAAFQYGVKMADGRKTRRQGEK 80

                          90       100
                  ....*....|....*....|....*..
gi 41054589   514 NEKAELDRQWKKISAIIEKRKKMEADG 540
Cdd:pfam07807  81 DEKAKLDRELQKIQNIIQKRKGGGGGA 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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