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Conserved domains on  [gi|919184439|ref|NP_955460|]
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nucleophosmin 1a [Danio rerio]

Protein Classification

nucleoplasmin-like domain-containing protein( domain architecture ID 11140131)

nucleoplasmin-like domain-containing protein similar to Homo sapiens nucleoplasmin-2 and nucleoplasmin-3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nucleoplasmin pfam03066
Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation ...
 12-111 8.47e-45

Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays.


:

Pssm-ID: 460792  Cd Length: 102  Bit Score: 147.02  E-value: 8.47e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919184439   12 LYGCELKAGKD-ITFNPEDD-DYDHQLSVRMACVDPSTKDELNVVEIEGQDSEGQKVKAVLATLKPSTLPSVCLGGFEIT 89
Cdd:pfam03066   1 LWGCELKKEKKtVTFDVEEDeDCEHQLSLKTICLGAKAKDELNVVEVEAMNYKKKPIKVPIASLKVSVLPMVSLDGLEPT 80

                          90       100
                  ....*....|....*....|..
gi 919184439   90 PPVVFRLRTGSGPVHISGQHLV 111
Cdd:pfam03066  81 PPVTFRLKSGSGPVHISGQHLV 102
NPM1-C pfam16276
Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly ...
 229-277 8.95e-23

Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly found in Nucleophosmin proteins in mammalia species. Nucleophosmin, a nucleocytoplasmic shuttling protein, is related with cancer and involved in serveral cellluar functions, such as ribosome maturatation and export, centrosome duplication, and response to stress stimuli. This domain has a three-helix bundle which can bind G-quadruplex DNA and the interaction involves helices H1 and H2 of the NPM1-C domain mainly through electrostatic contacts with G-quadruplex phosphates, indicating a crucial role in rescuring its function in leukemia.


:

Pssm-ID: 465081  Cd Length: 49  Bit Score: 88.20  E-value: 8.95e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 919184439  229 ADIKSKMMESVAKGVSLPKVQLKFENYVNNCFKGTDPKVVEELWKWRQT 277
Cdd:pfam16276   1 EEIKAKMQESVEKGVSLPKVEAKFENFVKNCFKMTDQKVIQDLWQWRQS 49
 
Name Accession Description Interval E-value
Nucleoplasmin pfam03066
Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation ...
 12-111 8.47e-45

Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays.


Pssm-ID: 460792  Cd Length: 102  Bit Score: 147.02  E-value: 8.47e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919184439   12 LYGCELKAGKD-ITFNPEDD-DYDHQLSVRMACVDPSTKDELNVVEIEGQDSEGQKVKAVLATLKPSTLPSVCLGGFEIT 89
Cdd:pfam03066   1 LWGCELKKEKKtVTFDVEEDeDCEHQLSLKTICLGAKAKDELNVVEVEAMNYKKKPIKVPIASLKVSVLPMVSLDGLEPT 80

                          90       100
                  ....*....|....*....|..
gi 919184439   90 PPVVFRLRTGSGPVHISGQHLV 111
Cdd:pfam03066  81 PPVTFRLKSGSGPVHISGQHLV 102
NPM1-C pfam16276
Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly ...
 229-277 8.95e-23

Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly found in Nucleophosmin proteins in mammalia species. Nucleophosmin, a nucleocytoplasmic shuttling protein, is related with cancer and involved in serveral cellluar functions, such as ribosome maturatation and export, centrosome duplication, and response to stress stimuli. This domain has a three-helix bundle which can bind G-quadruplex DNA and the interaction involves helices H1 and H2 of the NPM1-C domain mainly through electrostatic contacts with G-quadruplex phosphates, indicating a crucial role in rescuring its function in leukemia.


Pssm-ID: 465081  Cd Length: 49  Bit Score: 88.20  E-value: 8.95e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 919184439  229 ADIKSKMMESVAKGVSLPKVQLKFENYVNNCFKGTDPKVVEELWKWRQT 277
Cdd:pfam16276   1 EEIKAKMQESVEKGVSLPKVEAKFENFVKNCFKMTDQKVIQDLWQWRQS 49
 
Name Accession Description Interval E-value
Nucleoplasmin pfam03066
Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation ...
 12-111 8.47e-45

Nucleoplasmin/nucleophosmin domain; Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays.


Pssm-ID: 460792  Cd Length: 102  Bit Score: 147.02  E-value: 8.47e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919184439   12 LYGCELKAGKD-ITFNPEDD-DYDHQLSVRMACVDPSTKDELNVVEIEGQDSEGQKVKAVLATLKPSTLPSVCLGGFEIT 89
Cdd:pfam03066   1 LWGCELKKEKKtVTFDVEEDeDCEHQLSLKTICLGAKAKDELNVVEVEAMNYKKKPIKVPIASLKVSVLPMVSLDGLEPT 80

                          90       100
                  ....*....|....*....|..
gi 919184439   90 PPVVFRLRTGSGPVHISGQHLV 111
Cdd:pfam03066  81 PPVTFRLKSGSGPVHISGQHLV 102
NPM1-C pfam16276
Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly ...
 229-277 8.95e-23

Nucleophosmin C-terminal domain; This domain, approximately 50 residues in length, is mainly found in Nucleophosmin proteins in mammalia species. Nucleophosmin, a nucleocytoplasmic shuttling protein, is related with cancer and involved in serveral cellluar functions, such as ribosome maturatation and export, centrosome duplication, and response to stress stimuli. This domain has a three-helix bundle which can bind G-quadruplex DNA and the interaction involves helices H1 and H2 of the NPM1-C domain mainly through electrostatic contacts with G-quadruplex phosphates, indicating a crucial role in rescuring its function in leukemia.


Pssm-ID: 465081  Cd Length: 49  Bit Score: 88.20  E-value: 8.95e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 919184439  229 ADIKSKMMESVAKGVSLPKVQLKFENYVNNCFKGTDPKVVEELWKWRQT 277
Cdd:pfam16276   1 EEIKAKMQESVEKGVSLPKVEAKFENFVKNCFKMTDQKVIQDLWQWRQS 49
NPL pfam17800
Nucleoplasmin-like domain;
12-107 1.85e-12

Nucleoplasmin-like domain;


Pssm-ID: 465511  Cd Length: 90  Bit Score: 61.85  E-value: 1.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919184439   12 LYGCELKAGKDITFNPEDDdydhqLSVRMACVDPSTKDELNVVEIEgqdsEGQKVKAVLATLKPSTLPSVCLgGFEITP- 90
Cdd:pfam17800   1 FWGLEVPPGKPVTLEVPED-----LHITNAALGPSAKPETVVKVKV----DDEEEEFVLCTLTPGKVEQQPL-DLVFSEg 70

                          90
                  ....*....|....*...
gi 919184439   91 -PVVFRLrTGSGPVHISG 107
Cdd:pfam17800  71 eEVTFSV-KGKNTVHLTG 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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