|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
643-1306 |
1.27e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 1.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 643 ELENTVESLKRQQER-ELFRlnqenyilqaKLSSFEETSRKQRWLQfgetsdpltgeKLKQIQKEIQEQETLLQGYQQEN 721
Cdd:COG1196 197 ELERQLEPLERQAEKaERYR----------ELKEELKELEAELLLL-----------KLRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 722 ERLYNQVKDLQEqnkkneermfkenqnlfsELASLKEQMHKnhflsqaventeptKNQSFTDLLAELRAAQKEKNHLMED 801
Cdd:COG1196 256 EELEAELAELEA------------------ELEELRLELEE--------------LELELEEAQAEEYELLAELARLEQD 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 802 IKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEklyeikilEETHKQEVSRLQKRLqwyAENQELLDRDAARLREANE 881
Cdd:COG1196 304 IARLEERRRELEERLEELEEELAELEEELEELEEE--------LEELEEELEEAEEEL---EEAEAELAEAEEALLEAEA 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 882 ETEKLRLEIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQVKEMEGILKRRypnslpALILAASAAGDSVDRNTVEF 961
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL------EEALAELEEEEEEEEEALEE 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 962 MERRIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDIKEA- 1040
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAv 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1041 HQITVRKLEAEIDVLKHQNADLEHKKNDKGDQGLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRM 1120
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1121 MLSRQIPRSR--EETAAKRLKKDPNRGHGNAFPETLDGKLyHPHTFTDSHISEVLEENYRLRSELEGLILERSKLKMESE 1198
Cdd:COG1196 607 DLREADARYYvlGDTLLGRTLVAARLEAALRRAVTLAGRL-REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1199 AAVCQLEnsmKRVKDDAAAHIASLKASHEREIEKLLCQNAIENSSSKVAELNRKIATQEVLLKHFQGQVnELQGKQESLA 1278
Cdd:COG1196 686 ERLAEEE---LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE-ALEELPEPPD 761
|
650 660 670
....*....|....*....|....*....|....*..
gi 147905039 1279 VSQVREEI--LQKQITKL-------LEELKEAKENHT 1306
Cdd:COG1196 762 LEELERELerLEREIEALgpvnllaIEEYEELEERYD 798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
783-1364 |
1.68e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 1.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 783 DLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAyATGEKLYEIKILEETHKQEVSRLQKRLQwy 862
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-EAQAEEYELLAELARLEQDIARLEERRR-- 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 863 aENQELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQVKEMEGILKRRYpnslpa 942
Cdd:COG1196 313 -ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA------ 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 943 liLAASAAgdsvdrntvefmERRIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQLLAHRQKEapQSQRN 1022
Cdd:COG1196 386 --EELLEA------------LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL--EEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1023 SSSRLKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEHKKNDKGDQGLQSIEFqvEQAQARAKLARLNEELAAKGR 1102
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF--LEGVKAALLLAGLRGLAGAVA 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1103 EIQDLTKTVERLQKERRMMLSRQIPRSREETAAKRLK--KDPNRGHGNAFPETLDGKlyhphtftdshiSEVLEENYRLR 1180
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEylKAAKAGRATFLPLDKIRA------------RAALAAALARG 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1181 SELEGLILERSKLKMESEAAVCQLENSMKRVKDDAAAHIAS--LKASHEREIEKLLCQNAIENSSSKVAELNRKIATQEV 1258
Cdd:COG1196 596 AIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALrrAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1259 LLKhfqgqvnELQGKQESLAVSQVREEILQKQITKLLEELKEAKENHTPEMKHFMGLERKIKQMEMRHRQREQELQQIIQ 1338
Cdd:COG1196 676 EAE-------AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580
....*....|....*....|....*..
gi 147905039 1339 QTRQVVETEQNKEVEKW-KRLAQLKNR 1364
Cdd:COG1196 749 EEEALEELPEPPDLEELeRELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
642-1385 |
1.90e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 1.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 642 KELENTVESLKRQ------------QEREL------FRLNQENYILQAKLSSFEETSRKQRWLQFGETsdpLTGEKLKQI 703
Cdd:TIGR02168 196 NELERQLKSLERQaekaerykelkaELRELelallvLRLEELREELEELQEELKEAEEELEELTAELQ---ELEEKLEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 704 QKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMfkenQNLFSELASLKEQmhknhflSQAVENTEPTKNQSFTD 783
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL----ANLERQLEELEAQ-------LEELESKLDELAEELAE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 784 LLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAyATGEKLYEIKILEETHKQEVSRLQKRLQWYA 863
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA-QLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 864 ENQELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKERALDAKR--IQDLERQVKEMEGILK-------- 933
Cdd:TIGR02168 421 QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEqaLDAAERELAQLQARLDslerlqen 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 934 -RRYPNSLPALILAASAAGDSVDR--NTVEFMERRIKKLEADLEG--------KDEEAKKSLRTMEQ------------- 989
Cdd:TIGR02168 501 lEGFSEGVKALLKNQSGLSGILGVlsELISVDEGYEAAIEAALGGrlqavvveNLNAAKKAIAFLKQnelgrvtflplds 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 990 ----QFQKMKIQYEQRLEEQEQLLAHRQKEAPQSQrnsssrlKALETELG------DIKEAHQITVRKLEAEIDVLKhqN 1059
Cdd:TIGR02168 581 ikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLR-------KALSYLLGgvlvvdDLDNALELAKKLRPGYRIVTL--D 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1060 ADLEHK------KNDKGDQGLQsiEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMMLSRQIPRSREET 1133
Cdd:TIGR02168 652 GDLVRPggvitgGSAKTNSSIL--ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1134 AAKrlkkdpnrghgnafpetldgKLYHPHTFTDSHISEVLEENYRLRSELEGLILERSKLKMESEAAVCQLENSMKRVKD 1213
Cdd:TIGR02168 730 ALR--------------------KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1214 DAAAHIASLKAShEREIEKLlcqnaiensSSKVAELNRKIATQEVLLKHFQGQVNELQGKQESLAVSQVREEILQKQITK 1293
Cdd:TIGR02168 790 QIEQLKEELKAL-REALDEL---------RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1294 LLEELKEAKENHTPEMKHFMGLERKIKQMEMRHRQREQELQQIIQQTRQVVETEQNKEVEKWKRLAQLKNReLDKFRTEL 1373
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR-LEGLEVRI 938
|
810
....*....|..
gi 147905039 1374 DSILDVLRELHR 1385
Cdd:TIGR02168 939 DNLQERLSEEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
606-1140 |
9.68e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 9.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 606 REKEL-LMLKRAQDAEEKWTGAQALMEQMKMTFCEKEKELENtVESLKRQQERELFRLNQENYILQAKLSsfeetsrkqr 684
Cdd:COG1196 223 KELEAeLLLLKLRELEAELEELEAELEELEAELEELEAELAE-LEAELEELRLELEELELELEEAQAEEY---------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 685 wlqfgetsdpLTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMfkenQNLFSELASLKEQMHKNH 764
Cdd:COG1196 292 ----------ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 765 FLSQAVENTEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLYEIKIL 844
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 845 EETHKQEVSRLQKRLQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKE-------RALDAKR 917
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYegflegvKAALLLA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 918 IQDLERQVKEMEGILKRRYPNSLPAlilAASAAGDSVDRNTVEFMERRIKKLEADLEGKDEEAkkSLRTMEQQFQKMKIQ 997
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEA---ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFL--PLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 998 YEQRLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEHkkndkgdQGLQSI 1077
Cdd:COG1196 593 ARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG-------GSLTGG 665
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 147905039 1078 EFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMMLSRQIPRSREETAAKRLKK 1140
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
615-1379 |
6.47e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 6.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 615 RAQDAEEKWTGAQALMEQMKMTFCEKEKELENTVEslkrqqerELFRLNQENYILQAKLSSFEET-SRKQRWLQFGETSD 693
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALAN--------EISRLEQQKQILRERLANLERQlEELEAQLEELESKL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 694 PLTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMfkenQNLFSELASLKEQMHKnhfLSQAVENT 773
Cdd:TIGR02168 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----ETLRSKVAQLELQIAS---LNNEIERL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 774 EPTKNQSftdllaELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAyATGEKLYEIKILEETHKQEVS 853
Cdd:TIGR02168 406 EARLERL------EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELE-RLEEALEELREELEEAEQALD 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 854 RLQKRLQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSK-ERALDA---KRIQDL--ERQVKE 927
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyEAAIEAalgGRLQAVvvENLNAA 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 928 MEGILKRRYPNSLPALILAASAAGDSVDRNTVEFM---ERRIKKLEADLEGKDEEAKKSLRTMEQQF-----------QK 993
Cdd:TIGR02168 559 KKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREIlknIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvddldnaleLA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 994 MKIQYEQRLEEQEQLLAHRQ-------KEAPQSQRNSSSRLKALETELGDIKEAhqitVRKLEAEIDVLKHQNADLEHKK 1066
Cdd:TIGR02168 639 KKLRPGYRIVTLDGDLVRPGgvitggsAKTNSSILERRREIEELEEKIEELEEK----IAELEKALAELRKELEELEEEL 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1067 NDKgdqglqsiefQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERrmmlsRQIPRSREETAAKRLKKDPNRGH 1146
Cdd:TIGR02168 715 EQL----------RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL-----TELEAEIEELEERLEEAEEELAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1147 GNAFPETLDGKlyhphtftdshISEVLEENYRLRSELEGLILERSKLKMESEAAVCQLENSMKRVkDDAAAHIASLKASH 1226
Cdd:TIGR02168 780 AEAEIEELEAQ-----------IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-AATERRLEDLEEQI 847
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1227 EREIEKllcqnaIENSSSKVAELNRKIATQEVLLKHFQgqvNELQGKQESLAVSQVREEILQKQITKLLEELKEAKENHT 1306
Cdd:TIGR02168 848 EELSED------IESLAAEIEELEELIEELESELEALL---NERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 147905039 1307 PEMKHFMGLERKIKQMEMRHRQREQELQQIIQQTRQVVETEQNKEVEKWKRLAqlknRELDKFRTELDSILDV 1379
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR----RRLKRLENKIKELGPV 987
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
613-1121 |
1.25e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 613 LKRAQDAEEKWTGAQALMEQMKMTFCEKEKELENTVESLKRQQERELFRLNQENYILQAKLSSFEETSRKQRWLQfgETS 692
Cdd:COG1196 283 LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE--AEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 693 DPLTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQ--EQNKKNEERMFKENQNLFSELASLKEQMHKnhfLSQAV 770
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAqlEELEEAEEALLERLERLEEELEELEEALAE---LEEEE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 771 ENTEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLYEIKILEETHKQ 850
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 851 EVSRLQKRLQ-----WYAENQELLDRDAARLREANEETEK-LRLEIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQ 924
Cdd:COG1196 518 GLRGLAGAVAvligvEAAYEAALEAALAAALQNIVVEDDEvAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 925 VKEMEGILKRRYPNSLPALILAASAAGDSVDRNTVEFMERRIKKLEADLEGKDEEAKKSLRTmeqqfqkmkiqyEQRLEE 1004
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG------------GSLTGG 665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1005 QEQLLAHRQKEAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEHKKNDKGDQGLQSIEFQVEQA 1084
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE 745
|
490 500 510
....*....|....*....|....*....|....*..
gi 147905039 1085 QARAKLARLNEELAAkgrEIQDLTKTVERLQKERRMM 1121
Cdd:COG1196 746 ELLEEEALEELPEPP---DLEELERELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
739-1117 |
2.02e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 739 EERMFKENQNLFSELASLKEQMHKnhfLSQAVENTEptknQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEK 818
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDE---LSQELSDAS----RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 819 VKRERDQAKDQIAYATgEKLYEIKILEETHKQEV--SRLQKRLQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTE 896
Cdd:TIGR02169 756 VKSELKELEARIEELE-EDLHKLEEALNDLEARLshSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 897 SGSPATQQRLRSKERALDAKRIQDLERQVKEMEGILKRrypnslpalilaasaagdsvdrntVEFMERRIKKLEADLEGK 976
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE------------------------LEAALRDLESRLGDLKKE 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 977 DEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQLLAHRQkeapqsqrNSSSRLKALETELGDIKEahqitVRKLEAEIDVLK 1056
Cdd:TIGR02169 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE--------ALEEELSEIEDPKGEDEE-----IPEEELSLEDVQ 957
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 147905039 1057 HQNADLEHKKNDKGDQGLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKE 1117
Cdd:TIGR02169 958 AELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
653-1119 |
1.92e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.09 E-value: 1.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 653 RQQERELFRLNQENYILQAKLSSFEETSRKQRWLQfgetsdpltgEKLKQIQKEIQEQETLLQGYQ--QENERLYNQVKD 730
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELE----------AELEELREELEKLEKLLQLLPlyQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 731 LQEQNKKNEERMfKENQNLFSELASLKEQMHKNHF-LSQAVENTEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDK 809
Cdd:COG4717 144 LPERLEELEERL-EELRELEEELEELEAELAELQEeLEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 810 QALEVDLEKVKRERDQAKDQ------------------IAYATGEKLYEIKILEETHKQEVSRLQKRLQWYAENQELLDR 871
Cdd:COG4717 223 EELEEELEQLENELEAAALEerlkearlllliaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 872 DAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQVKEMEGILKRRYPNSLPALILAASAAG 951
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 952 DsvdrntvefmerrikklEADLEGKDEEAKKsLRTMEQQFQKMKIQYEQRLEEQEQLLAHRQKEAPQSqrnsssRLKALE 1031
Cdd:COG4717 383 D-----------------EEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEEELEE------ELEELE 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1032 TELGDIKEAHQitvrKLEAEIDVLKHQNADLEhkkndkGDQGLQSIEFqvEQAQARAKLARLNEELAAKGREIQDLTKTV 1111
Cdd:COG4717 439 EELEELEEELE----ELREELAELEAELEQLE------EDGELAELLQ--ELEELKAELRELAEEWAALKLALELLEEAR 506
|
....*...
gi 147905039 1112 ERLQKERR 1119
Cdd:COG4717 507 EEYREERL 514
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
849-1385 |
3.54e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 3.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 849 KQEVSRLQKRLQWY----------------AENQELLDRDAARLREANEETEKLRLEIEKLKTESGspATQQRLRSKERA 912
Cdd:COG1196 219 KEELKELEAELLLLklreleaeleeleaelEELEAELEELEAELAELEAELEELRLELEELELELE--EAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 913 LdAKRIQDLERQVKEMEGILKRRypnslpaLILAASAAGDSVDRNTVEFMERRIKKLEADLEGKDEEAKKSLRTMEQQFQ 992
Cdd:COG1196 297 L-ARLEQDIARLEERRRELEERL-------EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 993 KMKIQYEQRLEEQEQLLAHRQKEApQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEHKKNDKGDQ 1072
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEAL-RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1073 GLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMMLSRQIPRSREETAAKRLKKDPNRGHG----- 1147
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagava 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1148 ----------NAFPETLDGKLYHPHTFTDSHISEVLEenyRLRSELEGLILERSKLKMESEAAvcQLENSMKRVKDDAAA 1217
Cdd:COG1196 528 vligveaayeAALEAALAAALQNIVVEDDEVAAAAIE---YLKAAKAGRATFLPLDKIRARAA--LAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1218 HIASLKASHE---REIEKLLCQNAIENSSSKVAELNRKIATQEVLLKHFQGQVNELQGKQESLAVSQVREEILQKQITKL 1294
Cdd:COG1196 603 LVASDLREADaryYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1295 LEELKEAKENHtpEMKHFMGLERKIKQMEMRHRQREQELQQIIQQTRQVVETEQNKEVEKWKRLAQLKNRELDKFRTELD 1374
Cdd:COG1196 683 ELAERLAEEEL--ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
570
....*....|.
gi 147905039 1375 SILDVLRELHR 1385
Cdd:COG1196 761 DLEELERELER 771
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
639-1383 |
8.43e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 8.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 639 EKEKELENTVESLKRQQER-ELFRLNQENY-ILQAKLSSFEETSRKQRWLQfgetsdplTGEKLKQIQKEIQEQETLLQG 716
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQLERlRREREKAERYqALLKEKREYEGYELLKEKEA--------LERQKEAIERQLASLEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 717 YQQE----NERLYNQVKDLQEQNKKNEERMFKENQNLFSELASLKEQmhknhfLSQAVENTEptknqsftDLLAELRAAQ 792
Cdd:TIGR02169 256 LTEEiselEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAE------IASLERSIA--------EKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 793 KEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDqiayatgeklyEIKILEETHKQEVSRLQKrlqwyaenqelLDRD 872
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE-----------EYAELKEELEDLRAELEE-----------VDKE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 873 AARLREaneETEKLRLEIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQVKEMEGilkrrypnSLPALILAASAAGD 952
Cdd:TIGR02169 380 FAETRD---ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA--------KINELEEEKEDKAL 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 953 SVdrntvEFMERRIKKLEADLEgkDEEAKKSLRTMEQQfqkmkiQYEQRLEEQEQLLAHRQKEAPQSQRNSSSRlKALET 1032
Cdd:TIGR02169 449 EI-----KKQEWKLEQLAADLS--KYEQELYDLKEEYD------RVEKELSKLQRELAEAEAQARASEERVRGG-RAVEE 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1033 ELGDIKEAHQITVRKLeaeIDVLKHQNADLEHKKN--------DKGDQGLQSIEFQVEQAQARAKLARLNEeLAAKGREI 1104
Cdd:TIGR02169 515 VLKASIQGVHGTVAQL---GSVGERYATAIEVAAGnrlnnvvvEDDAVAKEAIELLKRRKAGRATFLPLNK-MRDERRDL 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1105 Q------------DLTKTVERLQKERRMMLSRQIPRSREEtAAKRLKkdpnrghGNAFPETLDGKLYHP----------- 1161
Cdd:TIGR02169 591 SilsedgvigfavDLVEFDPKYEPAFKYVFGDTLVVEDIE-AARRLM-------GKYRMVTLEGELFEKsgamtggsrap 662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1162 ---HTFTDSHISEVLEENYRLRS---ELEGLILERSKLKMESEAAVCQLENSMKRVKDdAAAHIASLKASHEREIEKL-- 1233
Cdd:TIGR02169 663 rggILFSRSEPAELQRLRERLEGlkrELSSLQSELRRIENRLDELSQELSDASRKIGE-IEKEIEQLEQEEEKLKERLee 741
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1234 ------LCQNAIENSSSKVAELNRKIATQEVLLKHFQGQVNELqgkQESLAVSQVREeiLQKQITKLLEELK-------- 1299
Cdd:TIGR02169 742 leedlsSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL---EARLSHSRIPE--IQAELSKLEEEVSriearlre 816
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1300 -EAKENHTPEMKHFMGLERKIKQMEMRH--------RQREQELQQIIQQTRQVVETEQNKEVEKWKRLAQLKnRELDKFR 1370
Cdd:TIGR02169 817 iEQKLNRLTLEKEYLEKEIQELQEQRIDlkeqiksiEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK-KERDELE 895
|
810
....*....|...
gi 147905039 1371 TELDSILDVLREL 1383
Cdd:TIGR02169 896 AQLRELERKIEEL 908
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
528-1078 |
8.99e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 8.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 528 KKTSKDNTKTKSVRSIPTSNQFRKREILSGTKLIKPAASNKPSPHREGSPATPKRPEDPSDDSFVQLQTEPLGSYGGNRE 607
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 608 KELLMLKRAQDAEEKWTGAQALMEQMKMTFCEKEKELENTVESLKRQQER-ELFRLNQENYILQAK-LSSFEETSRKQRW 685
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKaEAAEKKKEEAKKKADaAKKKAEEKKKADE 1395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 686 LQFGETSDPLTGEKLKQIQKEIQEQETLLQGYQQ-----ENERLYNQVKDLQEQNKKNEERMFKENQNLFSELASLKEQM 760
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEkkkadEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 761 HKNHFLSQAVENTEpTKNQSFTDLLAELRAAQKEKNHlMEDIKRLKQDKQALEVDLEKVKRERDQAKDQiayATGEKLYE 840
Cdd:PTZ00121 1476 KKKAEEAKKADEAK-KKAEEAKKKADEAKKAAEAKKK-ADEAKKAEEAKKADEAKKAEEAKKADEAKKA---EEKKKADE 1550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 841 IKILEETHKQEVSRLQKRLQWYAENQELLDRDAARLREANE----ETEKLRLEIEKLKTESGSPATQQRLRSKE------ 910
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEarieEVMKLYEEEKKMKAEEAKKAEEAKIKAEElkkaee 1630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 911 -RALDAKRIQDLERQVKEMEGILKRRYPNSLPALILAASAAGDSVDRNTVEFMERRIKKLEADLEGKDEEAKKSLRTMEQ 989
Cdd:PTZ00121 1631 eKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 990 QFQKMKIQYEQRLEEQEQLLahRQKEAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEHKKNDK 1069
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKI--KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
....*....
gi 147905039 1070 GDQGLQSIE 1078
Cdd:PTZ00121 1789 DEKRRMEVD 1797
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
662-1119 |
1.15e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 662 LNQENYILQAKLSSFEETSRKQrwlqfgETSDPLTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQ---EQNKKN 738
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQL------KDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQkelEQNNKK 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 739 EERMFKENQNLFSELASLKEQmhKNHFLSQAVENTEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEK 818
Cdd:TIGR04523 283 IKELEKQLNQLKSEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 819 VKRERDQAKDQIAYATGE---KLYEIKILEethkQEVSRLQKRLQWYAENQELLDRdaaRLREANEETEKLRLEIEKLKt 895
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKEnqsYKQEIKNLE----SQINDLESKIQNQEKLNQQKDE---QIKKLQQEKELLEKEIERLK- 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 896 esgspatqqrlrsKERALDAKRIQDLERQVKEMEGILKrrypnSLPALIlaasaagdSVDRNTVEFMERRIKKLEADLEG 975
Cdd:TIGR04523 433 -------------ETIIKNNSEIKDLTNQDSVKELIIK-----NLDNTR--------ESLETQLKVLSRSINKIKQNLEQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 976 KdeeaKKSLRTMEQQFQKMKIQYEQrLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDI------------KEAHQI 1043
Cdd:TIGR04523 487 K----QKELKSKEKELKKLNEEKKE-LEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLedelnkddfelkKENLEK 561
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 147905039 1044 TVRKLEAEIDVLKHQNADLEhKKNDKGDQGLQSIEFQVEQaqaraklarLNEELAAKGREIQDLTKTVERLQKERR 1119
Cdd:TIGR04523 562 EIDEKNKEIEELKQTQKSLK-KKQEEKQELIDQKEKEKKD---------LIKEIEEKEKKISSLEKELEKAKKENE 627
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
652-907 |
2.02e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.24 E-value: 2.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 652 KRQQERELFRLNQEnyiLQAKLSSFEETSRKQRWLQfgetsdpltgEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDL 731
Cdd:COG4942 22 AAEAEAELEQLQQE---IAELEKELAALKKEEKALL----------KQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 732 QEQNKKNEERMfKENQNLFSELASLKEQMHKNHFLSQAVENTEPTKNQSFTDLLAELRAAQKEknhLMEDIKRLKQDKQA 811
Cdd:COG4942 89 EKEIAELRAEL-EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE---QAEELRADLAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 812 LEVDLEKVKRERDQAKDQIAyatgEKLYEIKILEETHKQEVSRLQKRLQWYAENQELLDRDAARLREANEETEKLRLEIE 891
Cdd:COG4942 165 LRAELEAERAELEALLAELE----EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
250
....*....|....*.
gi 147905039 892 KLKTESGSPATQQRLR 907
Cdd:COG4942 241 ERTPAAGFAALKGKLP 256
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
614-1137 |
2.37e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 2.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 614 KRAQDAEEKWTGAQALMEQMKMTFCEKEKELentVESLKRQQERELFRLNQENYILQAKLSSFEETSR--KQRWLQFGet 691
Cdd:COG4913 262 ERYAAARERLAELEYLRAALRLWFAQRRLEL---LEAELEELRAELARLEAELERLEARLDALREELDelEAQIRGNG-- 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 692 sdpltGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERmFKENQnlfSELASLKEQmhknhfLSQAVE 771
Cdd:COG4913 337 -----GDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEE-FAALR---AEAAALLEA------LEEELE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 772 NTEptknQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEkvkrerdQAKDQIAYATGEK---------LYEIK 842
Cdd:COG4913 402 ALE----EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLL-------ALRDALAEALGLDeaelpfvgeLIEVR 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 843 ---------------------ILEETHKQEVSR------LQKRLQWYaenqelldrdaaRLREANEETEKLRLE----IE 891
Cdd:COG4913 471 peeerwrgaiervlggfaltlLVPPEHYAAALRwvnrlhLRGRLVYE------------RVRTGLPDPERPRLDpdslAG 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 892 KLKTESgSPAT---QQRLRSKERALDAKRIQDLERQVKEM--EGILK----------RRYPNSLPalILAASAagdsvdR 956
Cdd:COG4913 539 KLDFKP-HPFRawlEAELGRRFDYVCVDSPEELRRHPRAItrAGQVKgngtrhekddRRRIRSRY--VLGFDN------R 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 957 NTVEFMERRIKKLEADLegkdEEAKKSLRTMEQQFQkmkiQYEQRLEEQEQLLAHR--QKEAPQSQRnsssRLKALETEL 1034
Cdd:COG4913 610 AKLAALEAELAELEEEL----AEAEERLEALEAELD----ALQERREALQRLAEYSwdEIDVASAER----EIAELEAEL 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1035 GDIKEAHQiTVRKLEAEIDVLKHQNADLEHKKNDKGDQgLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERL 1114
Cdd:COG4913 678 ERLDASSD-DLAALEEQLEELEAELEELEEELDELKGE-IGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
570 580
....*....|....*....|....*..
gi 147905039 1115 ----QKERRMMLSRQIPRSREETAAKR 1137
Cdd:COG4913 756 aaalGDAVERELRENLEERIDALRARL 782
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
593-1381 |
3.07e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.44 E-value: 3.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 593 QLQTEPLGSYGGNREKELLMLKRAQDAEEKwtGAQALMEQMKMTFCEKEKELENTVESLKRQQERELFRLNQENYILQAK 672
Cdd:TIGR00618 200 TLRSQLLTLCTPCMPDTYHERKQVLEKELK--HLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEA 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 673 LSSF--EETSRKQRWLQFGETSDPLT--GEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQN 748
Cdd:TIGR00618 278 VLEEtqERINRARKAAPLAAHIKAVTqiEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHI 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 749 lfsELASLKEQMHKNHFlSQAVENTEPTKNQSftdllaelraaqkeknhlmEDIKRLKQDKQALEVDLEKVKRERDQAKD 828
Cdd:TIGR00618 358 ---RDAHEVATSIREIS-CQQHTLTQHIHTLQ-------------------QQKTTLTQKLQSLCKELDILQREQATIDT 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 829 QIAYATGEKLYeikiLEETHKQEVSRLQKRLQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTESGspATQQRLRS 908
Cdd:TIGR00618 415 RTSAFRDLQGQ----LAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQ--IHLQETRK 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 909 KerALDAKRIQDLERQVKEMEGILKRRYPNSLPALILAASAAGDSVDRNTVEFMERRIKKLEADLEGKDEEAkkslrtme 988
Cdd:TIGR00618 489 K--AVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQR-------- 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 989 qqfqkmkiqyeQRLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEHKKND 1068
Cdd:TIGR00618 559 -----------ASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDL 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1069 KgDQGLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMMLSRQIPRSREETAAKRLkkdpnrghgn 1148
Cdd:TIGR00618 628 Q-DVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWK---------- 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1149 afpETLDGKLYHPHTftdshISEVLEENYRLRSELEGLILERSKLKMESEAAVCQLENSMKRVKDDAaahiasLKASHER 1228
Cdd:TIGR00618 697 ---EMLAQCQTLLRE-----LETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV------LKARTEA 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1229 EIEKLLCQNAIENSSSKVAELNRKIATQEVLLKHFQGQVNELQgkqeslavSQVREEILQKQITKLLEELKEAKENhtpE 1308
Cdd:TIGR00618 763 HFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLE--------AEIGQEIPSDEDILNLQCETLVQEE---E 831
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 147905039 1309 MKHFMGLERKIKQMEMRHRQREQELQQIIQQTRQVVETEQNKEVEKWKRLAQLKNR----ELDKFRTELDSILDVLR 1381
Cdd:TIGR00618 832 QFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQfdgdALIKFLHEITLYANVRL 908
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
698-1068 |
4.22e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 4.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 698 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQ---EQNKKNEERMFKENQNLFSELASLKEQMHKNHFLSQAVENTE 774
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 775 PTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLYEIKILEEThKQEVSR 854
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT-ERRLED 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 855 LQKRLqwyAENQELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQVKEMEGILKR 934
Cdd:TIGR02168 843 LEEQI---EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 935 RypnslpalilaasaagdsvdRNTVEFMERRIKKLEADLegkdeeakkslrtmEQQFQKMKIQYEQRLEEQEQLLAHRQK 1014
Cdd:TIGR02168 920 L--------------------REKLAQLELRLEGLEVRI--------------DNLQERLSEEYSLTLEEAEALENKIED 965
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 147905039 1015 EaPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEHKKND 1068
Cdd:TIGR02168 966 D-EEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKET 1018
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
588-1365 |
8.95e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.98 E-value: 8.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 588 DDSFVQLQTEPLGSYGGNREKELLMLKRAQDAEEKWT------GAQALMEQMKMTFCEKEKElENTVESLKRQQERELFR 661
Cdd:TIGR00606 268 DNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNdlyhnhQRTVREKERELVDCQRELE-KLNKERRLLNQEKTELL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 662 LNQENYILQAKLSSFEETSRKQRWLQFGETSDPLTGEKLKQIQKEIQEQETLLQGYQQENERLYNQV--------KDLQE 733
Cdd:TIGR00606 347 VEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLcadlqskeRLKQE 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 734 QNKKNEERMFKENQNLFSELASLKEQMHKNHFLSQAVENTEPT------KNQSFTDLLAELRAAqkEKNHLMEDIKRLKQ 807
Cdd:TIGR00606 427 QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSsdrileLDQELRKAERELSKA--EKNSLTETLKKEVK 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 808 DKQALEVDLEKVKRERDQAKDQ-------------IAYATGEKLYEIKILEETHKQEVSRLQKRLQWYAENQELLDRDAA 874
Cdd:TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQlnhhtttrtqmemLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSK 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 875 RLREANEETEKLRLEIEKLKTESG------SPATQQRLRSKERALDAKRIQ----DLERQVKEMEGILKRRYPNSlPALI 944
Cdd:TIGR00606 585 EINQTRDRLAKLNKELASLEQNKNhinnelESKEEQLSSYEDKLFDVCGSQdeesDLERLKEEIEKSSKQRAMLA-GATA 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 945 LAASAAGDSVDRNT--------VEFMERRIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQRL---EEQEQLLAHRQ 1013
Cdd:TIGR00606 664 VYSQFITQLTDENQsccpvcqrVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLglaPGRQSIIDLKE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1014 KEAPQSQRNSSSRLKALETELGDIKE---------AHQITVRKLEAEIDVLKHQNADLE--HKKNDKGDQGLQSIEFQVE 1082
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEqetllgtimPEEESAKVCLTDVTIMERFQMELKdvERKIAQQAAKLQGSDLDRT 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1083 QAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMMLSRQiprsrEETAAKRLKKDPNRGHGNAFPETLDGKLyhph 1162
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKT-----NELKSEKLQIGTNLQRRQQFEEQLVELS---- 894
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1163 tftdSHISEVLEENYRLRSELEGLILERSKLKMESEAAVCQLENSMKRVKDDAAAHIASLKASH--EREIEKLLCQNAIE 1240
Cdd:TIGR00606 895 ----TEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHgyMKDIENKIQDGKDD 970
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1241 NSSSKVAELNRKIATQEVLLKHFQGQVNELQGKQESLAVSQVREEILQKQITKL-----LEELKEAKENHTPEMKHFMGL 1315
Cdd:TIGR00606 971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRkreneLKEVEEELKQHLKEMGQMQVL 1050
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 147905039 1316 ERKIKQMEMRHRQREQELQQIIQQTRQVVETEQNKEVEKWKRLAQLKNRE 1365
Cdd:TIGR00606 1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAE 1100
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
696-1119 |
9.60e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 9.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 696 TGEKLKQIQKEIQEQETLLQGYQQENERlYNQVKDLQEQNKKNEERMFKENQNLFSELASLkEQMHKNHFLSQAVENTEp 775
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEE-YAELQEELEELEEELEELEAELEELREELEKL-EKLLQLLPLYQELEALE- 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 776 tknQSFTDLLAELRAAQKEknhlMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLyeikileETHKQEVSRL 855
Cdd:COG4717 139 ---AELAELPERLEELEER----LEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL-------QDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 856 QKRLQWYAEnqelldrdaaRLREANEETEKLRLEIEKLKTESGSPATQQRLRSKER-ALDAKRIQDLERQVKEMEGILKR 934
Cdd:COG4717 205 QQRLAELEE----------ELEEAQEELEELEEELEQLENELEAAALEERLKEARLlLLIAAALLALLGLGGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 935 RYPnsLPALILAASAAGDSVDRNTVEFMERRIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQLLAHRQK 1014
Cdd:COG4717 275 IAG--VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQEL 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1015 EAPQSQRNSSSRLKALETELGDI-KEAHQITVRKLEAEIDVLKHQNADLEHKKNDKGDqgLQSIEFQVEQAQARAKLARL 1093
Cdd:COG4717 353 LREAEELEEELQLEELEQEIAALlAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ--LEELLGELEELLEALDEEEL 430
|
410 420
....*....|....*....|....*.
gi 147905039 1094 NEELAAKGREIQDLTKTVERLQKERR 1119
Cdd:COG4717 431 EEELEELEEELEELEEELEELREELA 456
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
846-1052 |
1.35e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 846 ETHKQEVSRLQKRLQwyaENQELLDRDAARLREANEETEKLRLEIEKLKTESGspATQQRLRSKERALDA--KRIQDLER 923
Cdd:COG4942 23 AEAEAELEQLQQEIA---ELEKELAALKKEEKALLKQLAALERRIAALARRIR--ALEQELAALEAELAEleKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 924 QVKEMEGILKRR----YPNSL---PALILAASAAGDSVDRNT-----VEFMERRIKKLEADLEgKDEEAKKSLRTMEQQF 991
Cdd:COG4942 98 ELEAQKEELAELlralYRLGRqppLALLLSPEDFLDAVRRLQylkylAPARREQAEELRADLA-ELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 147905039 992 QKMKIQYEQRLEEQEQLLAHRQKEAPQSQRNSSSRLKALEtELGDIKEAHQITVRKLEAEI 1052
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELA-ELQQEAEELEALIARLEAEA 236
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
605-1380 |
1.69e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.13 E-value: 1.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 605 NREKELLMLKRAQDAEEKWtgAQALMEQMKMTFCEKEKELENTVESLKRQQERELFRLNQENYILQAKLSSFEETSRKQR 684
Cdd:pfam02463 198 QELKLKEQAKKALEYYQLK--EKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENK 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 685 wlqFGETSDPLTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNH 764
Cdd:pfam02463 276 ---EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKRE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 765 FLSQAVENTEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLYEIKIL 844
Cdd:pfam02463 353 AEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEIL 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 845 EETHK-----QEVSRLQKRLQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKERALD-AKRI 918
Cdd:pfam02463 433 EEEEEsielkQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSgLKVL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 919 QDLERQVKEMEGIL----KRRYPNSLPALILAASAAGDSVDRNTVEFMERRIKKLEADLEGKDEEAKKSLRTMEQQFQKM 994
Cdd:pfam02463 513 LALIKDGVGGRIISahgrLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLK 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 995 KIQ--------YEQRLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEhKK 1066
Cdd:pfam02463 593 SIAvleidpilNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLS-EL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1067 NDKGDQGLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMMLSRQIPRSREETAAKRLKKDPNRGH 1146
Cdd:pfam02463 672 TKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEE 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1147 GNAFPETLDGKLYHPHTFTDSHISEVLEENYRLRSELEGLILERSKLKMESEAAvcqlENSMKRVKDDAAAHIASLKASH 1226
Cdd:pfam02463 752 EEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRA----LEEELKEEAELLEEEQLLIEQE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1227 EREIEKLLCQNAIENSSSKVAELNRKIATQEVLLKHfqgQVNELQGKQESLAVSQVREEILQKQITKLLEELKEAKENHT 1306
Cdd:pfam02463 828 EKIKEEELEELALELKEEQKLEKLAEEELERLEEEI---TKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEE 904
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 147905039 1307 PEMKHFMGLERKIKQMEMRHRQREQELQQIIQQTRQVVETEQNKEVEKWKRLAQLKNRELDKFRTELDSILDVL 1380
Cdd:pfam02463 905 ESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLM 978
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
698-1303 |
2.52e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 2.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 698 EKLKQIQKEIQEQETLLQGYQQENErlynQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKnhfLSQAVENTEPTK 777
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTE----NIEELIKEKEKELEEVLREINEISSELPELREELEK---LEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 778 NqSFTDLLAELRAAQKEKNHLMEDIK----RLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLYEikileeTHKQEVS 853
Cdd:PRK03918 238 E-EIEELEKELESLEGSKRKLEEKIReleeRIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE------EYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 854 RLQKRLQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTESGspatqqrlRSKERALDAKRIQDLERQVKEMEGILK 933
Cdd:PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE--------ELEERHELYEEAKAKKEELERLKKRLT 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 934 RRYPNSLPALILAASAAGDSV--DRNTVEFMERRIKKLEADLEGKDEEAKKSLRT--------MEQQFQKMKIQYEQRLE 1003
Cdd:PRK03918 383 GLTPEKLEKELEELEKAKEEIeeEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKELLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1004 EQEQllahRQKEAPQSQRNSSSRLKALETELGDIKEahqitVRKLEAEIDVLKHQNADLEhkkndkgdqglqsiEFQVEQ 1083
Cdd:PRK03918 463 RIEK----ELKEIEEKERKLRKELRELEKVLKKESE-----LIKLKELAEQLKELEEKLK--------------KYNLEE 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1084 AQARAKLAR-LNEELAAKGREIQDLTKTVERLQ--KERRMMLSRQIpRSREETAAKRLKKDPNRGHGNAfpETLDGKLYH 1160
Cdd:PRK03918 520 LEKKAEEYEkLKEKLIKLKGEIKSLKKELEKLEelKKKLAELEKKL-DELEEELAELLKELEELGFESV--EELEERLKE 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1161 PHTFTDSHISEVleenyRLRSELEGLILERSKLKMESEAAVCQLENSMKRVKddaaahiaSLKASHErEIEKLLCQNAIE 1240
Cdd:PRK03918 597 LEPFYNEYLELK-----DAEKELEREEKELKKLEEELDKAFEELAETEKRLE--------ELRKELE-ELEKKYSEEEYE 662
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 147905039 1241 NSSSKVAELNRKIATQEVLLKHFQGQVNELQGKQESL-----AVSQVREEIlqKQITKLLEELKEAKE 1303
Cdd:PRK03918 663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLkeeleEREKAKKEL--EKLEKALERVEELRE 728
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
962-1366 |
2.53e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 2.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 962 MERRIKKLEadlegkdEEAKKSLRtmeqqFQKMKIQYEQRleeQEQLLAHRQKEAPQSQRNSSSRLKALETELgdikEAH 1041
Cdd:COG1196 198 LERQLEPLE-------RQAEKAER-----YRELKEELKEL---EAELLLLKLRELEAELEELEAELEELEAEL----EEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1042 QITVRKLEAEIDVLKHQNADLEhkkndkgdqgLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRmm 1121
Cdd:COG1196 259 EAELAELEAELEELRLELEELE----------LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA-- 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1122 lsrqiprsreetaakrlkkdpnrghgnafpetldgklyhphtftdshisEVLEENYRLRSELEGLILERSKLKMESEAAV 1201
Cdd:COG1196 327 -------------------------------------------------ELEEELEELEEELEELEEELEEAEEELEEAE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1202 CQLENSMKRVKDDAAAHIASLKASHEREIEKLLCQNAIENSSSKVAELNRKIATQEVLLKHFQGQVNELQGKQESLAVSQ 1281
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1282 VREEILQKQITKLLEELKEAKENHTPEMKHFMGLERKIKQmEMRHRQREQELQQIIQQTRQVVETEQNKEVEKWKRLAQL 1361
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA-ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
....*
gi 147905039 1362 KNREL 1366
Cdd:COG1196 517 AGLRG 521
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
698-1402 |
3.61e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 3.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 698 EKLKQIQKEIQEQETLLQGYQQEneRLYNQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNHFLSQAVEntepTK 777
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLRLE--ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE----EL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 778 NQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKD---QIAYATGEKLYEIKILEETHKQEVSR 854
Cdd:TIGR02168 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 855 LQKRLQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTE-SGSPATQQRLRSKERALDaKRIQDLERQVKEMEGILK 933
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARlERLEDRRERLQQEIEELL-KKLEEAELKELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 934 RRYPNSLPALILAASAAGDSVdRNTVEFMERRIKKLEADLEGKDEEaKKSLRTMEQQFQKMKIQYEQRLEEQEQLLAHRQ 1013
Cdd:TIGR02168 446 EEELEELQEELERLEEALEEL-REELEEAEQALDAAERELAQLQAR-LDSLERLQENLEGFSEGVKALLKNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1014 KEAPQSQRNSSSRlKALETELGDIKEAhqITVRKLEAEIDVLKHQnadlehKKNDKGDQG---LQSIEFQVEQAQARAKL 1090
Cdd:TIGR02168 524 VLSELISVDEGYE-AAIEAALGGRLQA--VVVENLNAAKKAIAFL------KQNELGRVTflpLDSIKGTEIQGNDREIL 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1091 ARLNEELAAkgreIQDLTKTVERLQKERRMMLSRQIPRSREETAAKRLKKdpNRGHGNAFpeTLDGKLYHPHTFTdshis 1170
Cdd:TIGR02168 595 KNIEGFLGV----AKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKK--LRPGYRIV--TLDGDLVRPGGVI----- 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1171 evleenYRLRSELEGLILERsklkmeseaavcqlensmkrvkddaaahiaslkashEREIEKLlcqnaiensSSKVAELN 1250
Cdd:TIGR02168 662 ------TGGSAKTNSSILER------------------------------------RREIEEL---------EEKIEELE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1251 RKIATQEVLLKHFQGQVNELQGKQESLAVSQVREEILQKQITKLLEELKEAKENHTPEMKHFMG-LERKIKQMEMRHRQR 1329
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKeLTELEAEIEELEERL 770
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 147905039 1330 EQELQQIIQQTRQVVETEQnkevekwkRLAQLKNrELDKFRTELDSILDVLRELHRQGVVVPMALAGEENTAE 1402
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEA--------QIEQLKE-ELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
769-1139 |
5.60e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 5.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 769 AVENTEPTKNQSFTDLLAELraAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAK------DQIAYATGEKLYEIK 842
Cdd:PRK02224 177 GVERVLSDQRGSLDQLKAQI--EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARetrdeaDEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 843 ILEEthkqEVSRLQKRLqwyAENQELLDRDAARLREANEETEKLRLEIEKLKTESGspatqqrLRSKERALDAKRIQDLE 922
Cdd:PRK02224 255 TLEA----EIEDLRETI---AETEREREELAEEVRDLRERLEELEEERDDLLAEAG-------LDDADAEAVEARREELE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 923 RQVKEMEgilkrrypNSLPALILAASAAGDSVDRNTVEfmerrikklEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQRL 1002
Cdd:PRK02224 321 DRDEELR--------DRLEECRVAAQAHNEEAESLRED---------ADDLEERAEELREEAAELESELEEAREAVEDRR 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1003 EEQEQL------LAHRQKEAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEHKKNDKGDQGLQS 1076
Cdd:PRK02224 384 EEIEELeeeieeLRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEG 463
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 147905039 1077 IEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQ------------KERRMMLSRQIPRSREETAAKRLK 1139
Cdd:PRK02224 464 SPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlveaedrierlEERREDLEELIAERRETIEEKRER 538
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
607-1377 |
7.52e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.90 E-value: 7.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 607 EKELLMLKRAQDAEEKWTGAQALMEQMKMTFCEKEKELENTVESLKRQQ--ERELFRLNQENYILQAKLSSFEETSRKQR 684
Cdd:TIGR00606 419 SKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEgsSDRILELDQELRKAERELSKAEKNSLTET 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 685 WLQFGETSDPLTGEKLKQIQKEIQEQETLlqgyQQENERLyNQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNH 764
Cdd:TIGR00606 499 LKKEVKSLQNEKADLDRKLRKLDQEMEQL----NHHTTTR-TQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKK 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 765 FLSQAVENTEPTKNQS---FTDLLAELRAAQKEKNHLMEDIKRLKQDK-------------QALEVDLEKVKRERDQAKD 828
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTrdrLAKLNKELASLEQNKNHINNELESKEEQLssyedklfdvcgsQDEESDLERLKEEIEKSSK 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 829 QIAYATGEK-LYEIKILEETHKQE--VSRLQKRLQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQR 905
Cdd:TIGR00606 654 QRAMLAGATaVYSQFITQLTDENQscCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAP 733
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 906 LRSKEraldakrIQDLERQVKEMegilkrrypnslpalilaasaagdsvdRNTVEFMERRIKKLEADLEgKDEEAKKSLR 985
Cdd:TIGR00606 734 GRQSI-------IDLKEKEIPEL---------------------------RNKLQKVNRDIQRLKNDIE-EQETLLGTIM 778
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 986 TMEQQFQKMKIQYEQRLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDVLK----HQNAD 1061
Cdd:TIGR00606 779 PEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRkliqDQQEQ 858
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1062 LEHKKNDKGDQGLQSIEFQVEQAQARAklarLNEELAAKGREIQDLTKTVERLQKE---RRMMLSRQIPRSREETAAKRL 1138
Cdd:TIGR00606 859 IQHLKSKTNELKSEKLQIGTNLQRRQQ----FEEQLVELSTEVQSLIREIKDAKEQdspLETFLEKDQQEKEELISSKET 934
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1139 KKDPNRGHGNAFPETLDGKLYHPHTFTDSHISEVLEENYRLRSELEGLIlersklkmeseAAVCQLENSMKRVKDDAAAH 1218
Cdd:TIGR00606 935 SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVN-----------AQLEECEKHQEKINEDMRLM 1003
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1219 IASLKASHEREiekllcqnAIENSSSKVAELNRKIATQEVLLKHFQGQVNELQGKQeslavsqvreeiLQKQITKLLEEL 1298
Cdd:TIGR00606 1004 RQDIDTQKIQE--------RWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQ------------MKQEHQKLEENI 1063
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1299 KEAKENHTPEMKHFMGLERKIKQMEMRHRqreqelqqiiqqTRQVVETEQN-KEVEKWKRLAQLKNRELDKFRTELDSIL 1377
Cdd:TIGR00606 1064 DLIKRNHVLALGRQKGYEKEIKHFKKELR------------EPQFRDAEEKyREMMIVMRTTELVNKDLDIYYKTLDQAI 1131
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
676-1302 |
9.35e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.57 E-value: 9.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 676 FEETSRKQRWLQFGETSDPLTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKneerMFKENQNLFSELAS 755
Cdd:pfam05483 84 YKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKD----LIKENNATRHLCNL 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 756 LKEQMHKNHFLSQAVENTEPTKNQSFTDL----------LAELRAaqKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQ 825
Cdd:pfam05483 160 LKETCARSAEKTKKYEYEREETRQVYMDLnnniekmilaFEELRV--QAENARLEMHFKLKEDHEKIQHLEEEYKKEIND 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 826 AKDQIAY------ATGEKLYEIKILEETHKQEVSRLQKRLQWYAENqelldrdaarLREANEETEKLRLEIEKLKTESGS 899
Cdd:pfam05483 238 KEKQVSLlliqitEKENKMKDLTFLLEESRDKANQLEEKTKLQDEN----------LKELIEKKDHLTKELEDIKMSLQR 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 900 PATQQRLRSKERALDAKRIQDL-ERQVKEMEGILKRRYPNSLPALILAASAAGDS----VDRNTVEFMERRIKKLEADLE 974
Cdd:pfam05483 308 SMSTQKALEEDLQIATKTICQLtEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEellrTEQQRLEKNEDQLKIITMELQ 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 975 GKDEEAkkslrtmeQQFQKMKIQYEQRLEEQEQLLAHRQKEAPQSQR--NSSSRLKALETELGDIKEAHQITVRKLEAEI 1052
Cdd:pfam05483 388 KKSSEL--------EEMTKFKNNKEVELEELKKILAEDEKLLDEKKQfeKIAEELKGKEQELIFLLQAREKEIHDLEIQL 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1053 DVLK----HQNADLEHKKNDKGDQGLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMMLSRqipr 1128
Cdd:pfam05483 460 TAIKtseeHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQ---- 535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1129 sreetaakrlkkdpnrghgnafpetldgklyhphtftdshISEVLEENYRLRSELEGLileRSKLKMESEAAVCQLENSM 1208
Cdd:pfam05483 536 ----------------------------------------IENLEEKEMNLRDELESV---REEFIQKGDEVKCKLDKSE 572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1209 KRVKddaAAHIASLKASHEREIEKLLCQN---AIENSSSKVAELN-------RKIATQEVLLKHFQGQVNELQGKQESLA 1278
Cdd:pfam05483 573 ENAR---SIEYEVLKKEKQMKILENKCNNlkkQIENKNKNIEELHqenkalkKKGSAENKQLNAYEIKVNKLELELASAK 649
|
650 660 670
....*....|....*....|....*....|..
gi 147905039 1279 ------VSQVREEILQKQIT--KLLEELKEAK 1302
Cdd:pfam05483 650 qkfeeiIDNYQKEIEDKKISeeKLLEEVEKAK 681
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
791-1039 |
1.10e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 791 AQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQI-AYATGEKLYEIKILEETHKQEVSRLQKRLqwyaenqELL 869
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERReALQRLAEYSWDEIDVASAEREIAELEAEL-------ERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 870 DRDAARLREANEETEKLRLEIEKLKTEsgspatQQRLRSKERALDaKRIQDLERQVKEMEGILKRRYPNSLPALILA--- 946
Cdd:COG4913 681 DASSDDLAALEEQLEELEAELEELEEE------LDELKGEIGRLE-KELEQAEEELDELQDRLEAAEDLARLELRALlee 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 947 --ASAAGDSVDRNTVEFMERRIKKLEADLEGKDEEAKKSLRTMEQQFQKMKI----------QYEQRLEEQEQLLAHRQK 1014
Cdd:COG4913 754 rfAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETAdldadleslpEYLALLDRLEEDGLPEYE 833
|
250 260 270
....*....|....*....|....*....|.
gi 147905039 1015 EAPQSQRNSSSR------LKALETELGDIKE 1039
Cdd:COG4913 834 ERFKELLNENSIefvadlLSKLRRAIREIKE 864
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
866-1135 |
1.22e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 866 QELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQVKEMEGILKRrypnslpalil 945
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE----------- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 946 aasaagdsvdrntvefMERRIKKLEADLEGKDEEAKKSLRTMeqqfqkmkiqYEQRLEEQEQLLAHrQKEAPQSQRNSSS 1025
Cdd:COG4942 88 ----------------LEKEIAELRAELEAQKEELAELLRAL----------YRLGRQPPLALLLS-PEDFLDAVRRLQY 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1026 rlkaleteLGDIKEAHQITVRKLEAEIDVLKHQNADLEHKKNDK----GDQGLQSIEFQVEQAQARAKLARLNEELAAKG 1101
Cdd:COG4942 141 --------LKYLAPARREQAEELRADLAELAALRAELEAERAELeallAELEEERAALEALKAERQKLLARLEKELAELA 212
|
250 260 270
....*....|....*....|....*....|....
gi 147905039 1102 REIQDLTKTVERLQKERRMMLSRQIPRSREETAA 1135
Cdd:COG4942 213 AELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
853-1217 |
2.35e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 853 SRLQKRLQWYAENQELLDRDAARLREANEETEklRLEIEKLKTESgSPATQQRLRSKERALDAKRIQDLERQVKEMEGIL 932
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLE--RLRREREKAER-YQALLKEKREYEGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 933 --KRRYPNSLPALIlaasaagdSVDRNTVEFMERRIKKLEADLEGKDEEAKKSLRTmeqQFQKMKIQYEQrLEEQEQLLA 1010
Cdd:TIGR02169 247 asLEEELEKLTEEI--------SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE---KIGELEAEIAS-LERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1011 HRQKEAPQSQRNSSSRLKALETELGDIK---EAHQITVRKLEAEIDVLKHQNADLEhkkndkgdQGLQSIEfqVEQAQAR 1087
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEELEreiEEERKRRDKLTEEYAELKEELEDLR--------AELEEVD--KEFAETR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1088 AKLARLNEELAAKGREIQDLTKTVERLQKERRmMLSRQIPRSREETAAKRLKKdpnrghgNAFPETLDGKLYHPHTFTD- 1166
Cdd:TIGR02169 385 DELKDYREKLEKLKREINELKRELDRLQEELQ-RLSEELADLNAAIAGIEAKI-------NELEEEKEDKALEIKKQEWk 456
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 147905039 1167 -SHISEVLE----ENYRLRSELEGLILERSKLKMESEAAVCQLENSMKRVKDDAAA 1217
Cdd:TIGR02169 457 lEQLAADLSkyeqELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV 512
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
642-1321 |
2.48e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 2.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 642 KELENTVESLKRQQERELFRLNQENYILQAKLSSFEETSRKQRWLQFGETSDpltgeklkQIQKEIQEQETLLQGYQQEN 721
Cdd:pfam15921 216 RSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQD--------RIEQLISEHEVEITGLTEKA 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 722 ERLYNQVKDLQEQNKKNEERMFKENQNLFSELASLKEQmhknhflsqaventeptknqsftdlLAELRAAQKEKNHLMED 801
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLEST-------------------------VSQLRSELREAKRMYED 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 802 -IKRLKQDKQALEVDLEKVKRERDQAKdQIAYATGEKLYeiKILEETHKQEvsrlqKRLQWYAE-NQELLDRDAA----- 874
Cdd:pfam15921 343 kIEELEKQLVLANSELTEARTERDQFS-QESGNLDDQLQ--KLLADLHKRE-----KELSLEKEqNKRLWDRDTGnsiti 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 875 -----RLREANEETEKLRLEIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQVKEMEGILkRRYPNSLPAlilaasa 949
Cdd:pfam15921 415 dhlrrELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEML-RKVVEELTA------- 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 950 agdsvDRNTVEFMERRIKKLEADLegkdEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQLlahrqkeapqsqRNSSSRLKA 1029
Cdd:pfam15921 487 -----KKMTLESSERTVSDLTASL----QEKERAIEATNAEITKLRSRVDLKLQELQHL------------KNEGDHLRN 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1030 LETELgdikEAHQITVRKLEAEIDVLKHQnadLEHKKNDKGDQGLQSIEFQVEQAQARAKLARLNEELA-------AKGR 1102
Cdd:pfam15921 546 VQTEC----EALKLQMAEKDKVIEILRQQ---IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQefkilkdKKDA 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1103 EIQDLTKTVERLQKERRMMLSRQIPRSReetAAKRLKKDPNRghgnaFPETLDGKLYHPHTFTDSHisEVLEENYRLRSe 1182
Cdd:pfam15921 619 KIRELEARVSDLELEKVKLVNAGSERLR---AVKDIKQERDQ-----LLNEVKTSRNELNSLSEDY--EVLKRNFRNKS- 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1183 lEGLILERSKLKMESEAAVCQLENSMKRVKddaaahiaSLKAShereiekllcqnaiENSSSKVAELNRKIATQEvllkh 1262
Cdd:pfam15921 688 -EEMETTTNKLKMQLKSAQSELEQTRNTLK--------SMEGS--------------DGHAMKVAMGMQKQITAK----- 739
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 147905039 1263 fQGQVNELQGK----QESLAVSQVREEILQKQITKLLEELKEA---KENHTPEMKHFMGLERKIKQ 1321
Cdd:pfam15921 740 -RGQIDALQSKiqflEEAMTNANKEKHFLKEEKNKLSQELSTVateKNKMAGELEVLRSQERRLKE 804
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
640-1363 |
2.96e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 640 KEKELENTVESLKRQQERELfrlnqENYILQAKLSSFEETSRKQRWLQFGETSDPLTGEKLKQIQKEIQEQETLLQGYQQ 719
Cdd:pfam02463 191 DLEELKLQELKLKEQAKKAL-----EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 720 ENER-LYNQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNHFLSQAVENTEPTKNQSFTDLLAELRAAQKEKNHL 798
Cdd:pfam02463 266 KLAQvLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 799 MEDIKRLKQDKQalEVDLEKVKRERDQAKDQIAYATGEKLYEIKILEETHKQEVSRLQKRLQWYAENQELLDRDAARLRE 878
Cdd:pfam02463 346 ELEIKREAEEEE--EEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 879 ANEETEKLRLEIEKLKTESGSPATQQRL-RSKERALDAKRIQDLERQVKEMEGILKRrypnslpALILAASAAGDSVDRN 957
Cdd:pfam02463 424 EKKEELEILEEEEESIELKQGKLTEEKEeLEKQELKLLKDELELKKSEDLLKETQLV-------KLQEQLELLLSRQKLE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 958 TVEFMERRIKKLEADLEGKDEEAKKSLRTMEQQFQKmkiqyeqRLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDI 1037
Cdd:pfam02463 497 ERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLG-------DLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRA 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1038 KEAHQITVRKLEAEIDVLKHQNADLEHKKNDKGDQG--LQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQ 1115
Cdd:pfam02463 570 LTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLaqLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLR 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1116 K-----ERRMMLSRQIPRSREETAAKRLKKDPNR---------GHGNAFPETLDGKLYHPHTFTDSHISEVLEENYRLRS 1181
Cdd:pfam02463 650 KgvsleEGLAEKSEVKASLSELTKELLEIQELQEkaeselakeEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQE 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1182 ELEGLILERSKLKMESEAAVCQLENSM--KRVKDDAAAHIASLKASHEREIEKLLCQNAIENSSSKVAELNRKIATQEVL 1259
Cdd:pfam02463 730 AQDKINEELKLLKQKIDEEEEEEEKSRlkKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEE 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1260 LKHFQGQVNELQGKQESLAVSQVREEILQKQITKLLEELKEAKENHTPEMKHFMGLERKIKQMEMRHRQREQELQQIIQQ 1339
Cdd:pfam02463 810 LKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELE 889
|
730 740
....*....|....*....|....
gi 147905039 1340 TRQVVETEQNKEVEKWKRLAQLKN 1363
Cdd:pfam02463 890 SKEEKEKEEKKELEEESQKLNLLE 913
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
956-1125 |
3.08e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.94 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 956 RNTVEFMERRIKKLEADLEGKDEEAKK-------------------SLRTMEQQFQKMKIQY---EQRLEEQEQLLAHRQ 1013
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEfrqknglvdlseeaklllqQLSELESQLAEARAELaeaEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1014 KEAPQSQRNSS-----SRLKALETELGDI----KEAHQiTVRKLEAEIdvlkhqnADLEHKKNDKGDQGLQSIEFQVEQA 1084
Cdd:COG3206 254 DALPELLQSPViqqlrAQLAELEAELAELsaryTPNHP-DVIALRAQI-------AALRAQLQQEAQRILASLEAELEAL 325
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 147905039 1085 QAR-----AKLARLNEE---LAAKGREIQDLTKTVERLQKERRMMLSRQ 1125
Cdd:COG3206 326 QAReaslqAQLAQLEARlaeLPELEAELRRLEREVEVARELYESLLQRL 374
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
606-929 |
3.20e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 3.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 606 REKELLMLKRAQDAEEKWTGAQALMEQMKMTFCEKEKelentvesLKRQQERELFRLNQEnyilqaklssfEETSRKQRW 685
Cdd:pfam17380 305 KEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQER--------MAMERERELERIRQE-----------ERKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 686 LQfgetsdpltgEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNHF 765
Cdd:pfam17380 366 RQ----------EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 766 LSQAVENTEPTKnqsftdlLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLYEIK--I 843
Cdd:pfam17380 436 EVRRLEEERARE-------MERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKqaM 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 844 LEETHKQEVsrLQKRLQwyaENQELLDRDAARlREANEETEKlRLEIEklktESGSPATQQRLRSKERA-LDA-KRIQDL 921
Cdd:pfam17380 509 IEEERKRKL--LEKEME---ERQKAIYEEERR-REAEEERRK-QQEME----ERRRIQEQMRKATEERSrLEAmEREREM 577
|
....*...
gi 147905039 922 ERQVKEME 929
Cdd:pfam17380 578 MRQIVESE 585
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
785-1125 |
3.28e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 785 LAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIayatgeKLYEIKILEETHKQEVSRLQKRLQWYAE 864
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREEL------EKLEKLLQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 865 NQELLDRDAARLREANEETEKLRLEIEKLKTE------SGSPATQQRLRSKERALDA----------------KRIQDLE 922
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEEleelleQLSLATEEELQDLAEELEElqqrlaeleeeleeaqEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 923 RQVKEMEG----------ILKRRYPNSLPALILAASAAGDSVDRNTVEFMERRIKKLEADLEGKDEEAKKSLRTMEQQFQ 992
Cdd:COG4717 227 EELEQLENeleaaaleerLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 993 KMKIQYEQRLEEQEQLLAHRQKEAPQSQrnSSSRLKALETELGDIKEAH-QITVRKLEAEIDVLKHQNADLEHKKNDKGD 1071
Cdd:COG4717 307 LQALPALEELEEEELEELLAALGLPPDL--SPEELLELLDRIEELQELLrEAEELEEELQLEELEQEIAALLAEAGVEDE 384
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 147905039 1072 QGLQSIEFQVEQAQA-RAKLARLNEELAAKGR----------------EIQDLTKTVERLQKERRMMLSRQ 1125
Cdd:COG4717 385 EELRAALEQAEEYQElKEELEELEEQLEELLGeleellealdeeeleeELEELEEELEELEEELEELREEL 455
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
626-1193 |
3.38e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.76 E-value: 3.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 626 AQALMEQMKMTFCEKEKELENTVESLKRQQERELFRLNQENYILQAKLSSFEE-----TSRKQRWLQFGETSDPLTGEKL 700
Cdd:pfam12128 270 DETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSelealEDQHGAFLDADIETAAADQEQL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 701 KQIQKEIQEQE---TLLQGYQQENERLYNQVKDL-QEQNKKNEERMFKENQNLFSELASLKEQMhKNHF--LSQAVENTE 774
Cdd:pfam12128 350 PSWQSELENLEerlKALTGKHQDVTAKYNRRRSKiKEQNNRDIAGIKDKLAKIREARDRQLAVA-EDDLqaLESELREQL 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 775 PTKNQSFTDLLAELRAAQKEKNHLMEDI---KRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLYEIKILEET---H 848
Cdd:pfam12128 429 EAGKLEFNEEEYRLKSRLGELKLRLNQAtatPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQAseaL 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 849 KQEVSRLQKRLQWYAENQELLDRDAARLRE-ANEETEKLRLEIEKL-------------KTESGSPATQQRLRSKEraLD 914
Cdd:pfam12128 509 RQASRRLEERQSALDELELQLFPQAGTLLHfLRKEAPDWEQSIGKVispellhrtdldpEVWDGSVGGELNLYGVK--LD 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 915 AKRIQDLERQvkEMEGILKRRypnsLPALILAASAAGDSVDRNTVEFMERRIKKLEADLEgkDEEAKKSLRTMEQQFQKM 994
Cdd:pfam12128 587 LKRIDVPEWA--ASEEELRER----LDKAEEALQSAREKQAAAEEQLVQANGELEKASRE--ETFARTALKNARLDLRRL 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 995 KIQYEQRLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEidvLKHQNADLEHKKNDKGDQGL 1074
Cdd:pfam12128 659 FDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTE---KQAYWQVVEGALDAQLALLK 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1075 QSIEfqVEQAQARAKLARLNE----ELAAKG----------REIQDLTKTVERLQKERRMMLS---------------RQ 1125
Cdd:pfam12128 736 AAIA--ARRSGAKAELKALETwykrDLASLGvdpdviaklkREIRTLERKIERIAVRRQEVLRyfdwyqetwlqrrprLA 813
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 147905039 1126 IPRSREETAAKRLKKDPNRghgnafpETLDGKLYHPHTFTDSHISEVLEenYRLRSELEGLILERSKL 1193
Cdd:pfam12128 814 TQLSNIERAISELQQQLAR-------LIADTKLRRAKLEMERKASEKQQ--VRLSENLRGLRCEMSKL 872
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1046-1402 |
4.63e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 4.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1046 RKLEAEIDVLKHQ--NADLEHKKNDKGDQGLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMMLS 1123
Cdd:COG1196 216 RELKEELKELEAEllLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1124 RQIprsREETAAKRLKkdpnrghgnafpetldgklyhphtftdshisevlEENYRLRSELEGLILERSKLKMESEAAVCQ 1203
Cdd:COG1196 296 ELA---RLEQDIARLE----------------------------------ERRRELEERLEELEEELAELEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1204 LENSMKRVKD------DAAAHIASLKASHEREIEKLlcQNAIENSSSKVAELNRKIATQEVLLKHFQGQVNELQGKQESL 1277
Cdd:COG1196 339 LEELEEELEEaeeeleEAEAELAEAEEALLEAEAEL--AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1278 AVSQVREEILQKQITKLLEELKEAKENHTPEMKHFMGLERKIKQMEMRHRQREQELQQIIQQTRQVVETEQNKEVEKWKR 1357
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 147905039 1358 LAQLKNRELDKFRTELDSILDVLRELHRQGVVVPMALAGEENTAE 1402
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
787-1312 |
5.07e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 5.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 787 ELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLYEIkileethKQEVSRLQKRLQWYAENQ 866
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQL-------EREIERLERELEERERRR 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 867 ELLDRDAARLREANEETEK----LRLEIEKLKTEsgSPATQQRLRSKERALDAkRIQDLERQVKEMEG---ILKRRyPNS 939
Cdd:COG4913 362 ARLEALLAALGLPLPASAEefaaLRAEAAALLEA--LEEELEALEEALAEAEA-ALRDLRRELRELEAeiaSLERR-KSN 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 940 LPALILA-----ASAAGDSVDRNTV--EFMErrIKKLEADLEG---------------KDEEAKKSLRTMEQQFQKMKIQ 997
Cdd:COG4913 438 IPARLLAlrdalAEALGLDEAELPFvgELIE--VRPEEERWRGaiervlggfaltllvPPEHYAAALRWVNRLHLRGRLV 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 998 YeQRLEEqeqllAHRQKEAPQSQRNS-SSRLKA--------LETELGDIKEAHQI-TVRKLEAE-----IDVLKHQNADL 1062
Cdd:COG4913 516 Y-ERVRT-----GLPDPERPRLDPDSlAGKLDFkphpfrawLEAELGRRFDYVCVdSPEELRRHpraitRAGQVKGNGTR 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1063 eHKKNDKGDqglqSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMMLSRQiprsreeTAAKRLKKdp 1142
Cdd:COG4913 590 -HEKDDRRR----IRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERR-------EALQRLAE-- 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1143 nrghgnafpetldgklyhpHTFTDSHISEVLEENYRLRSELEGLILERSKLK-MESEAAVCQLE-NSMKRVKDDAAAHIA 1220
Cdd:COG4913 656 -------------------YSWDEIDVASAEREIAELEAELERLDASSDDLAaLEEQLEELEAElEELEEELDELKGEIG 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1221 SLKASHEReiekllCQNAIENSSSKVAELNRKIATQEVLLkhFQGQVNELQGKQeslAVSQVREEiLQKQITKLLEELKE 1300
Cdd:COG4913 717 RLEKELEQ------AEEELDELQDRLEAAEDLARLELRAL--LEERFAAALGDA---VERELREN-LEERIDALRARLNR 784
|
570
....*....|..
gi 147905039 1301 AKENHTPEMKHF 1312
Cdd:COG4913 785 AEEELERAMRAF 796
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
613-1383 |
7.18e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 7.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 613 LKRAQDAEEKWTGAQALM-EQMKMTFCEKEKELENTVESlKRQQERELFRLNQENYILQAKLSSFEET--SRKQRWLQFG 689
Cdd:TIGR02169 200 LERLRREREKAERYQALLkEKREYEGYELLKEKEALERQ-KEAIERQLASLEEELEKLTEEISELEKRleEIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 690 ETSDPLTGEKLKQIQKEIQE---QETLLQGYQQENERlynQVKDLQEQNKKNEERMFK-----------------ENQNL 749
Cdd:TIGR02169 279 KKIKDLGEEEQLRVKEKIGEleaEIASLERSIAEKER---ELEDAEERLAKLEAEIDKllaeieelereieeerkRRDKL 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 750 FSELASLKEQMHKNHFLSQAVENTEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQ 829
Cdd:TIGR02169 356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 830 IAY---ATGEKLYEIKILEethkQEVSRLQKRLQwyAENQELLDRDAaRLREANEETEKLRLEIEKLKTESGSPATQQRL 906
Cdd:TIGR02169 436 INEleeEKEDKALEIKKQE----WKLEQLAADLS--KYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 907 RSKERALDAKRIQDLERQVKEMeGILKRRYpnsLPALILAASAAGDSVDRNTVEFMERRIKKLEADLEG----------K 976
Cdd:TIGR02169 509 GRAVEEVLKASIQGVHGTVAQL-GSVGERY---ATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGratflplnkmR 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 977 DEEAKKSLRTMEQ--QFQKMKIQYEQRLEE------QEQLLAHRQKEApqSQRNSSSRLKALETELGDIKEAHQITVRKL 1048
Cdd:TIGR02169 585 DERRDLSILSEDGviGFAVDLVEFDPKYEPafkyvfGDTLVVEDIEAA--RRLMGKYRMVTLEGELFEKSGAMTGGSRAP 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1049 EAEIDVLKHQNADLEHKKNDKGdqglqsiEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMmLSRQIPR 1128
Cdd:TIGR02169 663 RGGILFSRSEPAELQRLRERLE-------GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ-LEQEEEK 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1129 SREETAAKRLKKdpnrghgnafpetldgklyhphtftdSHISEVLEENYRLRSELEGLILERSKLKMESEAAVCQLENSM 1208
Cdd:TIGR02169 735 LKERLEELEEDL--------------------------SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1209 KRVK-DDAAAHIASLKASHeREIEKLLcqNAIENSSSKVaELNRKIATQEVllKHFQGQVNELQGKQESLavsQVREEIL 1287
Cdd:TIGR02169 789 SHSRiPEIQAELSKLEEEV-SRIEARL--REIEQKLNRL-TLEKEYLEKEI--QELQEQRIDLKEQIKSI---EKEIENL 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1288 QKQItkllEELKEAKENHTPEM----KHFMGLERKIKQMEMRHRQREQElqqiiqqtrqvvETEQNKEVEKWKRLAQLKN 1363
Cdd:TIGR02169 860 NGKK----EELEEELEELEAALrdleSRLGDLKKERDELEAQLRELERK------------IEELEAQIEKKRKRLSELK 923
|
810 820
....*....|....*....|
gi 147905039 1364 RELDKFRTELDSILDVLREL 1383
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGED 943
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
664-1051 |
8.74e-06 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 49.68 E-value: 8.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 664 QENYILQAKLSSFEETSRKQRWLQ--FGETSDPL--TGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQeqnkKNE 739
Cdd:pfam19220 3 QRNELLRVRLGEMADRLEDLRSLKadFSQLIEPIeaILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLT----RRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 740 ERMFKENQNLFSELASLKEQMHKNHFLSQAVENTEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKV 819
Cdd:pfam19220 79 SAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 820 KRERDQAKDQIAYATGEKlYEIKILEETHKQEVSRLQKRlqwYAENQELLDRDAARLREANEETEKLRLEIEKLKTESGS 899
Cdd:pfam19220 159 EGELATARERLALLEQEN-RRLQALSEEQAAELAELTRR---LAELETQLDATRARLRALEGQLAAEQAERERAEAQLEE 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 900 PATQQRLrskERALDAKRIQDLERQVKEMEGIL--KRRYPNSLPALILAA--SAAGDSVDRNTVEfmeRRIKKLEADLEg 975
Cdd:pfam19220 235 AVEAHRA---ERASLRMKLEALTARAAATEQLLaeARNQLRDRDEAIRAAerRLKEASIERDTLE---RRLAGLEADLE- 307
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 147905039 976 kdeeakkSLRTMEQQFQKMKIQYEQRLEEQEQLLAHRQK---EAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAE 1051
Cdd:pfam19220 308 -------RRTQQFQEMQRARAELEERAEMLTKALAAKDAaleRAEERIASLSDRIAELTKRFEVERAALEQANRRLKEE 379
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
665-887 |
9.07e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 9.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 665 ENYILQAKLSSFEETSRKQRWLQfgetsdpltgEKLKQIQKEIQEQETLLQGYQQEN---------ERLYNQVKDLQEQN 735
Cdd:COG3206 159 EAYLEQNLELRREEARKALEFLE----------EQLPELRKELEEAEAALEEFRQKNglvdlseeaKLLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 736 KKNEERMfkenQNLFSELASLKEQMHKNHFLSQAVENteptkNQSFTDLLAELRAAQKEknhlmedIKRLKQDKQALEVD 815
Cdd:COG3206 229 AEARAEL----AEAEARLAALRAQLGSGPDALPELLQ-----SPVIQQLRAQLAELEAE-------LAELSARYTPNHPD 292
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 147905039 816 LEKVKRERDQAKDQIAYATGEKLYEIKILEETHKQEVSRLQKRLQWYAENQELLDRDAARLREANEETEKLR 887
Cdd:COG3206 293 VIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVAR 364
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
698-916 |
2.09e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.67 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 698 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNHFLSQAVENTeptk 777
Cdd:COG3883 37 AELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDVLLGSE---- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 778 nqSFTDLLAELRAAQK---EKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAyatgEKLYEIKILEETHKQEVSR 854
Cdd:COG3883 113 --SFSDFLDRLSALSKiadADADLLEELKADKAELEAKKAELEAKLAELEALKAELE----AAKAELEAQQAEQEALLAQ 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 147905039 855 LQKRLQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKERALDAK 916
Cdd:COG3883 187 LSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAG 248
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
680-879 |
2.32e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 680 SRKQRWLQFGETSDPLTG----EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQnkKNEERMFKENQNLFSELAS 755
Cdd:COG4913 588 TRHEKDDRRRIRSRYVLGfdnrAKLAALEAELAELEEELAEAEERLEALEAELDALQER--REALQRLAEYSWDEIDVAS 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 756 LKEQMHKnhfLSQAVENTEPTkNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQI-AYAT 834
Cdd:COG4913 666 AEREIAE---LEAELERLDAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLeAAED 741
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 147905039 835 GEKLYEIKILEETHKQE-VSRLQKRL-QWYAENQELLDRDAARLREA 879
Cdd:COG4913 742 LARLELRALLEERFAAAlGDAVERELrENLEERIDALRARLNRAEEE 788
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
978-1278 |
4.80e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 4.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 978 EEAKKSLRTMEQQFQKMKIQY---EQRLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDV 1054
Cdd:pfam12128 247 QQEFNTLESAELRLSHLHFGYksdETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1055 LKHQNADLEhkkndkgDQGLQSIEFQVEQA-QARAKLARLNEELAAKGREIQDLTKTVERLQKERRMMLSRQIPRSREET 1133
Cdd:pfam12128 327 LEDQHGAFL-------DADIETAAADQEQLpSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKL 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1134 AAKRLKKDPNRGHGNAFPETLDGKLYHPHtftDSHISEVLEENYRLRSELEGLILERSKLKMESEaAVCQLENSMKRV-- 1211
Cdd:pfam12128 400 AKIREARDRQLAVAEDDLQALESELREQL---EAGKLEFNEEEYRLKSRLGELKLRLNQATATPE-LLLQLENFDERIer 475
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 147905039 1212 -----------KDDAAAHIASLKASHEREIEKL-LCQNAIENSSSKVAELNRKIATQEVLLKHFQGqvNELQGKQESLA 1278
Cdd:pfam12128 476 areeqeaanaeVERLQSELRQARKRRDQASEALrQASRRLEERQSALDELELQLFPQAGTLLHFLR--KEAPDWEQSIG 552
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
698-1269 |
6.68e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 6.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 698 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQnlfsELASLKEQMHKNHFLSQAVENTEPTK 777
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK----KADAAKKKAEEKKKADEAKKKAEEDK 1404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 778 NQSftdllAELRAAQKEKNHLMEDIKRLKQDKQALEVdleKVKRERDQAKDQIAYATGEKLyeiKILEETHKQEVSRLQK 857
Cdd:PTZ00121 1405 KKA-----DELKKAAAAKKKADEAKKKAEEKKKADEA---KKKAEEAKKADEAKKKAEEAK---KAEEAKKKAEEAKKAD 1473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 858 RLQWYAENQELLDRDAARLREANEETEKLR-LEIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQVKEmegilKRRY 936
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKkAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEE-----KKKA 1548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 937 PNSLPALILAASAAGDSVDRNTVEfMERRIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQLLAHRQKEA 1016
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKAEEAKKA-EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1017 PQSQRNSSSRLKALETElgDIKEAHQitVRKLEAEIDVLKHQNADLEHKKNDKGDQGLQSIEFQVEQAQARAKLARLNEE 1096
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAE--EKKKAEE--LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1097 LAAKGREIQDLTKTVERLQK--ERRMMLSRQIPRSREETAAKRLKKDPNRGHGNAFPEtLDGKLYHPHTFTDSHISEVLE 1174
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKaeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH-LKKEEEKKAEEIRKEKEAVIE 1782
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1175 ENYRLRSELEGLILERSKLKMESEAAVCQ--------LENSMKRVKDDAAAHIASLKASHEREIEKLLCQNAIENS-SSK 1245
Cdd:PTZ00121 1783 EELDEEDEKRRMEVDKKIKDIFDNFANIIeggkegnlVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNeNGE 1862
|
570 580
....*....|....*....|....
gi 147905039 1246 VAELNRKIATQEVLLKHFQGQVNE 1269
Cdd:PTZ00121 1863 DGNKEADFNKEKDLKEDDEEEIEE 1886
|
|
| DUF3498 |
pfam12004 |
Domain of unknown function (DUF3498); This presumed domain is functionally uncharacterized. ... |
978-1034 |
8.39e-05 |
|
Domain of unknown function (DUF3498); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with pfam00616, pfam00168. This domain has two conserved sequence motifs: DLQ and PLSFQNP.
Pssm-ID: 463427 [Multi-domain] Cd Length: 511 Bit Score: 47.06 E-value: 8.39e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 147905039 978 EEAKKSLRTMEQQFQKMKIQYEQRLEEQEQLLaHRQKEAPQSQRNS-SSRLKALETEL 1034
Cdd:pfam12004 409 EEYERRLLAQEEQTQKLLLEYQARLEDSEERL-RRQQEEKDSQMKSiISRLMAVEEEL 465
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
852-1139 |
1.35e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 852 VSRLQKR----LQWYAENQELLDRDAARLREANEETEKLRLEIEK------LKTEsgspatqqrLRSKERALDAKRIQDL 921
Cdd:TIGR02168 167 ISKYKERrketERKLERTRENLDRLEDILNELERQLKSLERQAEKaerykeLKAE---------LRELELALLVLRLEEL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 922 ERQVKEMEGILKRrYPNSLPALILAASAAGDSVDRNTVEFMERriKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQR 1001
Cdd:TIGR02168 238 REELEELQEELKE-AEEELEELTAELQELEEKLEELRLEVSEL--EEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1002 LEEQEQLLAHRQkEAPQSQRNSSSRLKALETELGDIKEAHQitvrKLEAEIDVLKHQNADLEHKKNDKgdqglqsiefQV 1081
Cdd:TIGR02168 315 ERQLEELEAQLE-ELESKLDELAEELAELEEKLEELKEELE----SLEAELEELEAELEELESRLEEL----------EE 379
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 147905039 1082 EQAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMMLSRQIPRSREETAAKRLK 1139
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE 437
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
698-1121 |
1.60e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.48 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 698 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQnkkneermfkenqnlfseLASLkeqmhkNHFLSQAVENTEPTK 777
Cdd:COG3096 836 AELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQ------------------LQLL------NKLLPQANLLADETL 891
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 778 NQSFTDLLAELRAAQKEKNHLMEDIKR----------LKQDKQ---ALEVDLEKVKRERDQAKDQIaYAtgeklyeikiL 844
Cdd:COG3096 892 ADRLEELREELDAAQEAQAFIQQHGKAlaqleplvavLQSDPEqfeQLQADYLQAKEQQRRLKQQI-FA----------L 960
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 845 EEThkqeVSRL-----QKRLQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTESGSpaTQQRLRSKERALDAKR-- 917
Cdd:COG3096 961 SEV----VQRRphfsyEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQ--YNQVLASLKSSRDAKQqt 1034
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 918 IQDLERQVKEMEgilkrrypnsLPALILAASAAGDSVDR--NTVEFMERRIKKLEADL---EGKDEEAKKSLRTMEQQFQ 992
Cdd:COG3096 1035 LQELEQELEELG----------VQADAEAEERARIRRDElhEELSQNRSRRSQLEKQLtrcEAEMDSLQKRLRKAERDYK 1104
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 993 KMKIQYEQRLEEQEQLLA-----------HRQKEAPQSQRN----SSSRLKALETELGD---------IKEAHQITVRKL 1048
Cdd:COG3096 1105 QEREQVVQAKAGWCAVLRlardndverrlHRRELAYLSADElrsmSDKALGALRLAVADnehlrdalrLSEDPRRPERKV 1184
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1049 EAEIDVLKHQNADLEHkknD--KGDQGLQSIEfqveqaQARAKLARLNEELAAkgREiQDL-----------TKTVERLQ 1115
Cdd:COG3096 1185 QFYIAVYQHLRERIRQ---DiiRTDDPVEAIE------QMEIELARLTEELTS--RE-QKLaissesvaniiRKTIQREQ 1252
|
....*.
gi 147905039 1116 KERRMM 1121
Cdd:COG3096 1253 NRIRML 1258
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
698-858 |
1.83e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.53 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 698 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErmfkenqnlfsELASLKEQMHKNHFLSQAVENteptk 777
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEL-----------EIEEVEARIKKYEEQLGNVRN----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 778 NQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLyeiKILEETHKQEVSRLQK 857
Cdd:COG1579 88 NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELD---EELAELEAELEELEAE 164
|
.
gi 147905039 858 R 858
Cdd:COG1579 165 R 165
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
720-1320 |
3.12e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 720 ENERLYNQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNHFLSQAVENTEPTKNQSFTDLLAELRAAQKEKNhlM 799
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK--A 1298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 800 EDIKRLKQDKQALE--VDLEKVKRERDQAKDQiAYATGEKLYEIKILEETHKQEVSRLQKRLQWYAENQElldrdAARLR 877
Cdd:PTZ00121 1299 EEKKKADEAKKKAEeaKKADEAKKKAEEAKKK-ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE-----AAEKK 1372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 878 eanEETEKLRLEIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQVKEMEGILKRRypnslpalilaasaagdSVDRN 957
Cdd:PTZ00121 1373 ---KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKA-----------------EEKKK 1432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 958 TVEFMERRIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDI 1037
Cdd:PTZ00121 1433 ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1038 KEAHQITVRKLEAEIDVLKHQNADLEHKKND---KGDQGLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERL 1114
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1115 QKERRMMLSRQIPRSREETAAK----RLKKDPNRGHGNAFPETLDGKLYHPHTFTDSHISEVLEENYRLRSELEGLILER 1190
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKaeeaKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1191 SKLKME----SEAAVCQLENSMKRvKDDAAAHIASLKASHEREIEKL-LCQNAIENSSSKVAELNRKiaTQEVLLKHFQG 1265
Cdd:PTZ00121 1673 DKKKAEeakkAEEDEKKAAEALKK-EAEEAKKAEELKKKEAEEKKKAeELKKAEEENKIKAEEAKKE--AEEDKKKAEEA 1749
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 147905039 1266 QVNELQGK---QESLAVSQVREEILQKQITKLLEELKEAKEnhtpemKHFMGLERKIK 1320
Cdd:PTZ00121 1750 KKDEEEKKkiaHLKKEEEKKAEEIRKEKEAVIEEELDEEDE------KRRMEVDKKIK 1801
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
675-1382 |
3.28e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 3.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 675 SFEETSRKQRWLQFGETSDPLTGEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQNLfsELA 754
Cdd:PTZ00121 1092 ATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKA--EEA 1169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 755 SLKEQMHKNHFLSQAVENTEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVD-LEKVKRERDQAKdqiaya 833
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKkAEEAKKDAEEAK------ 1243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 834 tgeKLYEIKILEETHKQEVSRLQKRLQWYAENQELLDRDAARLREANE--ETEKLRLEIEKLKTESGSPATQQRLRSKER 911
Cdd:PTZ00121 1244 ---KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 912 ALDAKRIQDLERQVKEMEGILKRRYPNSLPALILAASAAGDSVDRNTVEFMERRIKKLEADLEGKDEEAKKSLRTMEQQF 991
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA 1400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 992 QKMKIQYEQ--RLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEHKKNDK 1069
Cdd:PTZ00121 1401 EEDKKKADElkKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1070 GDQGLQSIEFQVEQAQARAKLARLNEELAAKGREIQ--DLTKTVERLQKERRMMLSRQIPRSREETAAKRLKKDPNRGHG 1147
Cdd:PTZ00121 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKkaEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1148 NAFPETLDGKLYHPHTFTDSHISEVLEENYRLRSElEGLILERSKLKMESEAAVCQLENSMK----RVKDDAAAHIASLK 1223
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE-EVMKLYEEEKKMKAEEAKKAEEAKIKaeelKKAEEEKKKVEQLK 1639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1224 ASHEREIEKL-LCQNAIENSSSKVAELNRKIATQEVLLKHFQGQVNELQGKQESLA--------VSQVREEilQKQITKL 1294
Cdd:PTZ00121 1640 KKEAEEKKKAeELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeaeeakkAEELKKK--EAEEKKK 1717
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1295 LEELKEAKEnhtpemkhfmglERKIKQMEMRHRQREQELQQIiqqtrqvvetEQNKEVEKWKRLAQLKNRELDKFRTELD 1374
Cdd:PTZ00121 1718 AEELKKAEE------------ENKIKAEEAKKEAEEDKKKAE----------EAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
|
....*...
gi 147905039 1375 SILDVLRE 1382
Cdd:PTZ00121 1776 EKEAVIEE 1783
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
607-1004 |
3.98e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 3.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 607 EKELLMLKRAQDAEEKWTGAQALMEQMKmTFCEKEKELENTVESLkRQQERELFRLNQENYILQAKLSSFEETSRKQRWL 686
Cdd:COG4717 115 REELEKLEKLLQLLPLYQELEALEAELA-ELPERLEELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSLATEE 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 687 QFGETSdpltgEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQ-EQNKKNEERMFKENQNLFSELASLKEQMHKNHF 765
Cdd:COG4717 193 ELQDLA-----EELEELQQRLAELEEELEEAQEELEELEEELEQLEnELEAAALEERLKEARLLLLIAAALLALLGLGGS 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 766 LSQAVENTEP---TKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLYEIK 842
Cdd:COG4717 268 LLSLILTIAGvlfLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 843 ILEETHkQEVSRLQKRLQWyaenQELLDRDAARLREANEETEKLRLEIEKLKTEsgspatQQRLRSKERALDakriQDLE 922
Cdd:COG4717 348 ELQELL-REAEELEEELQL----EELEQEIAALLAEAGVEDEEELRAALEQAEE------YQELKEELEELE----EQLE 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 923 RQVKEMEGILKRRYPNSLPALILAASAAGDSVdRNTVEFMERRIKKLEADLEgkDEEAKKSLRTMEQQFQKMKIQYEQRL 1002
Cdd:COG4717 413 ELLGELEELLEALDEEELEEELEELEEELEEL-EEELEELREELAELEAELE--QLEEDGELAELLQELEELKAELRELA 489
|
..
gi 147905039 1003 EE 1004
Cdd:COG4717 490 EE 491
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
969-1140 |
4.03e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 969 LEADLEGKDEEAKKSLRTMEQQFQkmkiQYEQRLEEQEQ-LLAHRQK----EAPQSQRNSSSRLKALETELGDIkeahQI 1043
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLP----ELRKELEEAEAaLEEFRQKnglvDLSEEAKLLLQQLSELESQLAEA----RA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1044 TVRKLEAEIDVLKHQ-NADLEHKKNDKGDQGLQSIEFQVeqAQARAKLARLNEELAAKGREIQDLTKTVERLQKERRMML 1122
Cdd:COG3206 234 ELAEAEARLAALRAQlGSGPDALPELLQSPVIQQLRAQL--AELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEA 311
|
170 180
....*....|....*....|....*..
gi 147905039 1123 SR---------QIPRSREETAAKRLKK 1140
Cdd:COG3206 312 QRilasleaelEALQAREASLQAQLAQ 338
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
885-1128 |
4.30e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 885 KLRLEIEKLKTESGSPATQQRLRSK-----ERALD-------AKRIQDLERQVKEMegILKRrypnslPALILAASAAGD 952
Cdd:COG4913 161 KARLKKQGVEFFDSFSAYLARLRRRlgigsEKALRllhktqsFKPIGDLDDFVREY--MLEE------PDTFEAADALVE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 953 SVD-----RNTVEFMERRIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQR------LEEQEQLLAHRQKEAPQSQR 1021
Cdd:COG4913 233 HFDdleraHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAqrrlelLEAELEELRAELARLEAELE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1022 NSSSRLKALETELGDIKEAHQ----ITVRKLEAEIDVLKHQNADLEHKKnDKGDQGLQSIEFQVE---------QAQARA 1088
Cdd:COG4913 313 RLEARLDALREELDELEAQIRgnggDRLEQLEREIERLERELEERERRR-ARLEALLAALGLPLPasaeefaalRAEAAA 391
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 147905039 1089 KLARLNEELAA-------KGREIQDLTKTVERLQKERRMMLSRQ--IPR 1128
Cdd:COG4913 392 LLEALEEELEAleealaeAEAALRDLRRELRELEAEIASLERRKsnIPA 440
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
758-1134 |
4.91e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 758 EQMHKNHFLSQAVENTEPTKNQSftdllaelRAAQKEKNHLMEDiKRLKQDKQALEVDLEKVKRerdqakdqiayatgek 837
Cdd:pfam17380 263 QTMTENEFLNQLLHIVQHQKAVS--------ERQQQEKFEKMEQ-ERLRQEKEEKAREVERRRK---------------- 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 838 lyeikiLEETHKQEVSRLQKRLQWYAENQELLdrdaarlREANEETEKLRLEIEKLKTEsgspatqqRLRSKERALDAKR 917
Cdd:pfam17380 318 ------LEEAEKARQAEMDRQAAIYAEQERMA-------MERERELERIRQEERKRELE--------RIRQEEIAMEISR 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 918 IQDLERQVKEmegilkRRYPNSLPALILAASaagdsvdrntvefmeRRIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQ 997
Cdd:pfam17380 377 MRELERLQME------RQQKNERVRQELEAA---------------RKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 998 YEQRLEEQEQLLAHRQKEAPQSQRNSSSRLK-----------ALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEHKK 1066
Cdd:pfam17380 436 EVRRLEEERAREMERVRLEEQERQQQVERLRqqeeerkrkklELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR 515
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 147905039 1067 N--DKGDQGLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVER------LQKERRMMlsRQIPRSREETA 1134
Cdd:pfam17380 516 KllEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEErsrleaMEREREMM--RQIVESEKARA 589
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
849-1049 |
5.16e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 849 KQEVSRLQKRLQWYAENQELLDRDA------ARLREANEETEKLRLEIEKLKT---------ESGSPATQQRLRSKERAL 913
Cdd:COG3206 188 RKELEEAEAALEEFRQKNGLVDLSEeaklllQQLSELESQLAEARAELAEAEArlaalraqlGSGPDALPELLQSPVIQQ 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 914 DAKRIQDLERQVKEMEGILKRRYPnslpalilaasaagdsvdrnTVEFMERRIKKLEADLEgkdEEAKKSLRTMEQQFQK 993
Cdd:COG3206 268 LRAQLAELEAELAELSARYTPNHP--------------------DVIALRAQIAALRAQLQ---QEAQRILASLEAELEA 324
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 147905039 994 MKIQyEQRLEEQEQLLAHRQKEAPQSQRnsssRLKALETELGDIKEAHQITVRKLE 1049
Cdd:COG3206 325 LQAR-EASLQAQLAQLEARLAELPELEA----ELRRLEREVEVARELYESLLQRLE 375
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
797-1095 |
5.39e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.83 E-value: 5.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 797 HLMEDIKRLKQDkQALEVDLEKVKRERDQAKDQI----------AYATGEKLYEIKILEETHKQEVSRLQKR-------- 858
Cdd:NF012221 1449 SLYQDLSNLTAG-EVIALSFDFARRAGLSTNNGIevlwngevvfASSGDASAWQQKTLKLTAKAGSNRLEFKgtghndgl 1527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 859 --------------LQWYAENQELLDRDA---ARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKER-ALD----AK 916
Cdd:NF012221 1528 gyildnvvatsessQQADAVSKHAKQDDAaqnALADKERAEADRQRLEQEKQQQLAAISGSQSQLESTDQnALEtngqAQ 1607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 917 R--IQDLERQV-KEMEGILKRrypnsLPALILAASAAGDSVDRNTVEFMERRIKKLEADLEgkdeEAKKslrTMEQQFQK 993
Cdd:NF012221 1608 RdaILEESRAVtKELTTLAQG-----LDALDSQATYAGESGDQWRNPFAGGLLDRVQEQLD----DAKK---ISGKQLAD 1675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 994 MKIQYEQRLEEQEQLLAHRQKEAPQSQRNSSsrlkalETELGDIKEAHQITVRKLEAEIDVLKHQNA--DLEHKKND--- 1068
Cdd:NF012221 1676 AKQRHVDNQQKVKDAVAKSEAGVAQGEQNQA------NAEQDIDDAKADAEKRKDDALAKQNEAQQAesDANAAANDaqs 1749
|
330 340
....*....|....*....|....*..
gi 147905039 1069 KGDQGLQSIEFQVEQAQARAKLARLNE 1095
Cdd:NF012221 1750 RGEQDASAAENKANQAQADAKGAKQDE 1776
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
605-853 |
5.74e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 5.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 605 NREKELLMLKRAQDAEEkwtgAQALMEQMKMTFCEKEKELENT--VESLKRQQERELFRLN---QENYILQAKLSSfEET 679
Cdd:COG5022 856 KAKKRFSLLKKETIYLQ----SAQRVELAERQLQELKIDVKSIssLKLVNLELESEIIELKkslSSDLIENLEFKT-ELI 930
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 680 SRKQRWLQFGETSDPLTGEKLKQ-IQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQNLFS------- 751
Cdd:COG5022 931 ARLKKLLNNIDLEEGPSIEYVKLpELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAElskqyga 1010
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 752 ---ELASLKEQMHKNHFLSQAVE--NTEPTKNQSFTDLlaelraaQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQA 826
Cdd:COG5022 1011 lqeSTKQLKELPVEVAELQSASKiiSSESTELSILKPL-------QKLKGLLLLENNQLQARYKALKLRRENSLLDDKQL 1083
|
250 260
....*....|....*....|....*..
gi 147905039 827 KDQIAYATGEKLYEIKILEETHKQEVS 853
Cdd:COG5022 1084 YQLESTENLLKTINVKDLEVTNRNLVK 1110
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
719-1066 |
5.90e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 719 QENERLYNQVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNHFLSQAVENTE---PTKNQSFTDLLAELRAAQKEK 795
Cdd:pfam01576 8 QAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRarlAARKQELEEILHELESRLEEE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 796 ----NHLMEDIKRLKQDKQALEVDLEkvKRERDQAKDQIAYATGEKlyEIKILEE---THKQEVSRLQKrlqwyaENQEL 868
Cdd:pfam01576 88 eersQQLQNEKKKMQQHIQDLEEQLD--EEEAARQKLQLEKVTTEA--KIKKLEEdilLLEDQNSKLSK------ERKLL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 869 LDRDAARLREANEETEKLR-LEIEKLKTESGSPATQQRLRSKE----------RALDAK------RIQDLERQVKEMEGI 931
Cdd:pfam01576 158 EERISEFTSNLAEEEEKAKsLSKLKNKHEAMISDLEERLKKEEkgrqelekakRKLEGEstdlqeQIAELQAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 932 LKRRYPNSLPALI-LAASAAGDSVDRNTVEFMERRIKKLEADLE---GKDEEAKKSLRTMEQQFQKMKIQYEQRLEE--- 1004
Cdd:pfam01576 238 LAKKEEELQAALArLEEETAQKNNALKKIRELEAQISELQEDLEserAARNKAEKQRRDLGEELEALKTELEDTLDTtaa 317
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 147905039 1005 QEQLLAHRQKEAPQSQRNSSSRLKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEHKK 1066
Cdd:pfam01576 318 QQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAK 379
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
777-934 |
9.17e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 9.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 777 KNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGeklyEIKILEETHKQEVSRLQ 856
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEA----EIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 857 KR---------------LQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTESGspATQQRLRSKERALDAKRiQDL 921
Cdd:COG3883 97 RSggsvsyldvllgsesFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELE--AKLAELEALKAELEAAK-AEL 173
|
170
....*....|...
gi 147905039 922 ERQVKEMEGILKR 934
Cdd:COG3883 174 EAQQAEQEALLAQ 186
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
606-1119 |
1.12e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 606 REKELLMLKRAQDAEEKWTGAQALMEQMKMTFCEKEKELENTVESLkRQQERELFRLNQENYILQAKlSSFEETSRKQRW 685
Cdd:PRK02224 236 RDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEV-RDLRERLEELEEERDDLLAE-AGLDDADAEAVE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 686 LQFGETSDpltgeKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEErmfkENQNLFSELASLKEQMHKNHF 765
Cdd:PRK02224 314 ARREELED-----RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE----EAAELESELEEAREAVEDRRE 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 766 LSQAVENTEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYAT----GEKLYEI 841
Cdd:PRK02224 385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecGQPVEGS 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 842 KILE--ETHKQEVSRLQKRLQWYAENQELLDRDAARLREAnEETEKlrlEIEKLKTEsgSPATQQRLRSKERALDAKR-- 917
Cdd:PRK02224 465 PHVEtiEEDRERVEELEAELEDLEEEVEEVEERLERAEDL-VEAED---RIERLEER--REDLEELIAERRETIEEKRer 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 918 IQDLERQVKEM--EGILKRRypnslpalilAASAAGDSVDRntvefMERRIKKLEADLEGKDEEaKKSLRTMEQQFQKMK 995
Cdd:PRK02224 539 AEELRERAAELeaEAEEKRE----------AAAEAEEEAEE-----AREEVAELNSKLAELKER-IESLERIRTLLAAIA 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 996 iQYEQRLEEQeqllahRQKEAPQSQRNSSSRLKaleteLGDIKEAHqitvRKLEAEIDvlkhqNADLEHKKNDKGdqglq 1075
Cdd:PRK02224 603 -DAEDEIERL------REKREALAELNDERRER-----LAEKRERK----RELEAEFD-----EARIEEAREDKE----- 656
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 147905039 1076 siEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQ--KERR 1119
Cdd:PRK02224 657 --RAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEelRERR 700
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
699-926 |
1.51e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 42.76 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 699 KLKQIQKEIQEQETLLQGYQQENERLYNQVKDlQEQNKKNEERMFKENQNlfsELASLKEQMHKnhfLSQAVENTEPTKN 778
Cdd:PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKK-QEEAISQASRKLRETQN---TLNQLNKQIDE---LNASIAKLEQQQA 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 779 QSFTDLLAELRAAQKEKNH----LM---EDIKR----------LKQDKQALEVDLEKVKRERDQAKDQIAYATGEK---L 838
Cdd:PRK11637 121 AQERLLAAQLDAAFRQGEHtglqLIlsgEESQRgerilayfgyLNQARQETIAELKQTREELAAQKAELEEKQSQQktlL 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 839 YEIKilEETHKQEVSRL--QKRLqwyAENQELLDRDAARLREANEETEKLRLEIEKLKTESgspatqqRLRSKERALDAK 916
Cdd:PRK11637 201 YEQQ--AQQQKLEQARNerKKTL---TGLESSLQKDQQQLSELRANESRLRDSIARAEREA-------KARAEREAREAA 268
|
250
....*....|
gi 147905039 917 RIQDLERQVK 926
Cdd:PRK11637 269 RVRDKQKQAK 278
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1045-1140 |
1.57e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1045 VRKLEAEIDVLKHQNADLEHKKNDKgdqglqsiEFQVEQAQARAKLARLNEELAA-KGREIQDLTKTVERLQKERRMMLS 1123
Cdd:COG2433 415 IRRLEEQVERLEAEVEELEAELEEK--------DERIERLERELSEARSEERREIrKDREISRLDREIERLERELEEERE 486
|
90
....*....|....*....
gi 147905039 1124 RqiprsREETAAK--RLKK 1140
Cdd:COG2433 487 R-----IEELKRKleRLKE 500
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
636-1107 |
2.43e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 636 TFCEKEKELENTVESLKRQQERELFRLNQenyiLQAKLSSFEETSR-KQRWLQFGETSDPLTGEKLKQIQKEIQEQETLL 714
Cdd:pfam05483 325 TICQLTEEKEAQMEELNKAKAAHSFVVTE----FEATTCSLEELLRtEQQRLEKNEDQLKIITMELQKKSSELEEMTKFK 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 715 QGYQQENERLYN------QVKDLQEQNKKNEERMFKENQNLFSELASLKEQMHKNHFLSQAVENTEPTKNQSFTDLLAEL 788
Cdd:pfam05483 401 NNKEVELEELKKilaedeKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 789 RAAQKEK-------NHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQiayaTGEKLYEIKILEETHKQEVSRLQkrlqw 861
Cdd:pfam05483 481 EKEKLKNieltahcDKLLLENKELTQEASDMTLELKKHQEDIINCKKQ----EERMLKQIENLEEKEMNLRDELE----- 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 862 YAENQELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKERALD--AKRIQDLERQVKEmegiLKRRypns 939
Cdd:pfam05483 552 SVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIEnkNKNIEELHQENKA----LKKK---- 623
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 940 lpalilaasaagDSVDRNTVEFMERRIKKLEADLEGKDEEAKKSLRTMEQQFQKMKIQYEQRLEEQEQLLAhRQKEAPQS 1019
Cdd:pfam05483 624 ------------GSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKA-IADEAVKL 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1020 QRNSSSRLKALETELGDIKEAHQITVRKleaeidVLKHQNADLEHKKNDKGDQGLQSIEFQVEQAQARAKLARLNEELAA 1099
Cdd:pfam05483 691 QKEIDKRCQHKIAEMVALMEKHKHQYDK------IIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEI 764
|
....*...
gi 147905039 1100 KGREIQDL 1107
Cdd:pfam05483 765 EKEEKEKL 772
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
606-1112 |
2.70e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 2.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 606 REKELLMLKRAQDAEEKWTGAQalMEQMKMTFCEKEKELENTVESLKRQQ---ERELFRLNQENYILQAKLSSFE----- 677
Cdd:pfam01576 325 REQEVTELKKALEEETRSHEAQ--LQEMRQKHTQALEELTEQLEQAKRNKanlEKAKQALESENAELQAELRTLQqakqd 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 678 -ETSRKQRWLQFGETSDPLT---------GEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQ 747
Cdd:pfam01576 403 sEHKRKKLEGQLQELQARLSeserqraelAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETR 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 748 ---NLFSELASLKEQmhKNHFLSQAVENTEPTKN-----QSFTDLLAELRAAQKEKNHLMEDI----KRLKQDKQALEVD 815
Cdd:pfam01576 483 qklNLSTRLRQLEDE--RNSLQEQLEEEEEAKRNverqlSTLQAQLSDMKKKLEEDAGTLEALeegkKRLQRELEALTQQ 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 816 LEkvkrERDQAKDQIAYATG---EKLYEIKILEETHKQEVSRLQKRLQWYaeNQELLDRDAARLREAnEETEKLRLEIEK 892
Cdd:pfam01576 561 LE----EKAAAYDKLEKTKNrlqQELDDLLVDLDHQRQLVSNLEKKQKKF--DQMLAEEKAISARYA-EERDRAEAEARE 633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 893 LKTESGSPAtqqrlRSKERALDAKriQDLERQVKEMEGilkrrypnSLPALILAASAAGDSVD---------RNTVEFME 963
Cdd:pfam01576 634 KETRALSLA-----RALEEALEAK--EELERTNKQLRA--------EMEDLVSSKDDVGKNVHelerskralEQQVEEMK 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 964 RRIKKLEADLEGKdEEAKKSLrtmEQQFQKMKIQYEQRLEEqeqllahRQKEAPQSQRNSSSRLKALETELGDIKEAHQI 1043
Cdd:pfam01576 699 TQLEELEDELQAT-EDAKLRL---EVNMQALKAQFERDLQA-------RDEQGEEKRRQLVKQVRELEAELEDERKQRAQ 767
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 147905039 1044 TV---RKLEAEIDVLKHQnADLEHKKNDKGDQGLQSIEFQVEQAQARAKLARLN-EELAAKGREIQDLTKTVE 1112
Cdd:pfam01576 768 AVaakKKLELDLKELEAQ-IDAANKGREEAVKQLKKLQAQMKDLQRELEEARASrDEILAQSKESEKKLKNLE 839
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
698-830 |
2.76e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 698 EKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMF-----KENQNLFSELASLKEQMHKNHFLSQAVEN 772
Cdd:COG1579 38 DELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvrnnKEYEALQKEIESLKRRISDLEDEILELME 117
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 147905039 773 TEPTKNQSFTDLLAELRAAQKEKNHLmedIKRLKQDKQALEVDLEKVKRERDQAKDQI 830
Cdd:COG1579 118 RIEELEEELAELEAELAELEAELEEK---KAELDEELAELEAELEELEAEREELAAKI 172
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
966-1049 |
2.89e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 966 IKKlEADLEGKDE------EAKKSLRTMEQQFQKMK---IQYEQRLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGD 1036
Cdd:PRK12704 54 IKK-EALLEAKEEihklrnEFEKELRERRNELQKLEkrlLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
|
90
....*....|...
gi 147905039 1037 IKEAHQITVRKLE 1049
Cdd:PRK12704 133 LEELIEEQLQELE 145
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
616-890 |
3.16e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 3.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 616 AQDAEEKWTGAQALMEQMKmtfcEKEKELENTVESLkrqqERELFRLNQENYILQaklSSFEETSRKQRWLQfgetsdpl 695
Cdd:TIGR02169 786 ARLSHSRIPEIQAELSKLE----EEVSRIEARLREI----EQKLNRLTLEKEYLE---KEIQELQEQRIDLK-------- 846
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 696 tgEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEermfKENQNLFSELASLKEQMHKnhfLSQAVEntep 775
Cdd:TIGR02169 847 --EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK----KERDELEAQLRELERKIEE---LEAQIE---- 913
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 776 TKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQAlEVDLEKVKRERDQAKDQIayatgEKLYEIKILEEthkQEVSRL 855
Cdd:TIGR02169 914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQRVEEEI-----RALEPVNMLAI---QEYEEV 984
|
250 260 270
....*....|....*....|....*....|....*
gi 147905039 856 QKRLQWYAENQELLDRDAARLREANEETEKLRLEI 890
Cdd:TIGR02169 985 LKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
642-860 |
3.49e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 642 KELENTVESLKRQQERELFRLNQENYILQAKLSSFEETSRKQRWLQFGETsdpltGEKLKQIQKEIQEQET--LLQGYQQ 719
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDR-----IEELQELLREAEELEEelQLEELEQ 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 720 ENERLYNQ--VKDLQEQNKKNEErmFKENQNLFSELASLKEQM--HKNHFLSQAVENTEPTKNQSFTDLLAELRAAQKEK 795
Cdd:COG4717 371 EIAALLAEagVEDEEELRAALEQ--AEEYQELKEELEELEEQLeeLLGELEELLEALDEEELEEELEELEEELEELEEEL 448
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 147905039 796 NHLMEDIKRLKQDKQALEVD--LEKVKRERDQAKDQIAYATgEKLYEIKILEETHKQEVSRLQKRLQ 860
Cdd:COG4717 449 EELREELAELEAELEQLEEDgeLAELLQELEELKAELRELA-EEWAALKLALELLEEAREEYREERL 514
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
699-1117 |
3.67e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 699 KLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNEERMFKENQNLF---SELASLKEQMHKNHFLSQAVENTEP 775
Cdd:TIGR04523 55 ELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSkinSEIKNDKEQKNKLEVELNKLEKQKK 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 776 TKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGE------KLYEIKILEETHK 849
Cdd:TIGR04523 135 ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKllklelLLSNLKKKIQKNK 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 850 QEVSRLQKRLQWYAENQELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQVKEME 929
Cdd:TIGR04523 215 SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLK 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 930 GILKRRYPNSLPALILAASAAGDSVDRNTVEF-------------MERRIKKLEADLEGKD---EEAKKSLRTMEQQFQK 993
Cdd:TIGR04523 295 SEISDLNNQKEQDWNKELKSELKNQEKKLEEIqnqisqnnkiisqLNEQISQLKKELTNSEsenSEKQRELEEKQNEIEK 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 994 MKIQYEQRLEEQEQL------LAHRQKEAPQSQRNSSSRLKALETELGDIKEAHQI---TVRKLEAEIDVLKHQNADLEH 1064
Cdd:TIGR04523 375 LKKENQSYKQEIKNLesqindLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERlkeTIIKNNSEIKDLTNQDSVKEL 454
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 147905039 1065 K----KNDKGDQGLQSIEFQVEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKE 1117
Cdd:TIGR04523 455 IiknlDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEK 511
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
722-1319 |
3.88e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 722 ERLYNQVKDLQ----EQNKKNEERMFKENQNLFSELASLKE-QMHKNHFLS---QAVENTEPTKNQsFTDLLAELRAAQK 793
Cdd:pfam15921 81 EEYSHQVKDLQrrlnESNELHEKQKFYLRQSVIDLQTKLQEmQMERDAMADirrRESQSQEDLRNQ-LQNTVHELEAAKC 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 794 EKNHLMEDIKRLKQDKQALEVDLEKVKRERDQAKDQIAYATGEKLYEIKILEETH---------------KQEVSRLQKR 858
Cdd:pfam15921 160 LKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHfrslgsaiskilrelDTEISYLKGR 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 859 LQWYAENQELLDRDAARLREANEETEKLRleIEKLKTESGSPATQQRLRSKERALDAKRIQDLERQVKEMEGILKRRYPN 938
Cdd:pfam15921 240 IFPVEDQLEALKSESQNKIELLLQQHQDR--IEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMR 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 939 SLPALILAASAAGDSVdRNTVEFMERRIKKLEADLEGKDEEAKKSlRTMEQQFQKMKIQYEQRLEEQEQLLAHRQK---- 1014
Cdd:pfam15921 318 QLSDLESTVSQLRSEL-REAKRMYEDKIEELEKQLVLANSELTEA-RTERDQFSQESGNLDDQLQKLLADLHKREKelsl 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1015 EAPQSQR------NSSSRLKALETELGDikeaHQITVRKLEAEIDVLKHQ-NADLEHK------KNDKGDQgLQSIEFQV 1081
Cdd:pfam15921 396 EKEQNKRlwdrdtGNSITIDHLRRELDD----RNMEVQRLEALLKAMKSEcQGQMERQmaaiqgKNESLEK-VSSLTAQL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1082 EqaQARAKLARLNEELAAKG-------REIQDLTKTVErlQKERRMMLSR-QIP--RSREETAAKRLKKDPNRGHGNAFP 1151
Cdd:pfam15921 471 E--STKEMLRKVVEELTAKKmtlesseRTVSDLTASLQ--EKERAIEATNaEITklRSRVDLKLQELQHLKNEGDHLRNV 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1152 ETLDGKLYHPHTFTDSHIsEVLEENYRLRSELEG--------LILERSKLKMESEAAVCQLEnSMKRVKDDAAAHIASLK 1223
Cdd:pfam15921 547 QTECEALKLQMAEKDKVI-EILRQQIENMTQLVGqhgrtagaMQVEKAQLEKEINDRRLELQ-EFKILKDKKDAKIRELE 624
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1224 AS-HEREIEKLLCQNA------------------IENSSSKVAELNRKIATQEVLLKHFQGQVNELQGKQESLavsQVRE 1284
Cdd:pfam15921 625 ARvSDLELEKVKLVNAgserlravkdikqerdqlLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL---KMQL 701
|
650 660 670
....*....|....*....|....*....|....*
gi 147905039 1285 EILQKQITKLLEELKEAKENHTPEMKHFMGLERKI 1319
Cdd:pfam15921 702 KSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQI 736
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
698-1033 |
3.94e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 698 EKLKQIQKEIQEQETLLQGYQQEnerlynqvkdlqEQNKKNEERMFKENQNLFSELASlKEQMHKNHFLSQAVENTEPTk 777
Cdd:pfam17380 269 EFLNQLLHIVQHQKAVSERQQQE------------KFEKMEQERLRQEKEEKAREVER-RRKLEEAEKARQAEMDRQAA- 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 778 nqsftdLLAELRAAQKEKNHLMEDIKrlkqdkqalevdLEKVKRERDQAKDQIAYATGEKLYEIKILEETHKQEVSRLQK 857
Cdd:pfam17380 335 ------IYAEQERMAMERERELERIR------------QEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQ 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 858 RLQwYAENQELLDRDAAR-LREANEETEKLRLEIEKLKTESGSPATQQRLRSKERAldakRIQDLERQvKEMEGILKRRY 936
Cdd:pfam17380 397 ELE-AARKVKILEEERQRkIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERV----RLEEQERQ-QQVERLRQQEE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 937 PNSLPALILaasaagDSVDRNTVEFMERRIKKLEADLEGK-----DEEAKKSL--RTMEQ------QFQKMKIQYEQRLE 1003
Cdd:pfam17380 471 ERKRKKLEL------EKEKRDRKRAEEQRRKILEKELEERkqamiEEERKRKLleKEMEErqkaiyEEERRREAEEERRK 544
|
330 340 350
....*....|....*....|....*....|
gi 147905039 1004 EQEQLLAHRQKEAPQSQRNSSSRLKALETE 1033
Cdd:pfam17380 545 QQEMEERRRIQEQMRKATEERSRLEAMERE 574
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
768-1386 |
4.74e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 4.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 768 QAVENTEPTKNQSFTDLLAELRAAQKEKNHLMEDIKRLKQDKQAL---EVDLEKVKRERDQAKDQIAYATGEKLYEIkil 844
Cdd:TIGR00606 230 EAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALksrKKQMEKDNSELELKMEKVFQGTDEQLNDL--- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 845 EETHKQEVSRLQKRLqwyAENQELLDRDAARLREANEETEKLRLEIEKLKTESGSPATQQRLRSKERALDAKRIQ----- 919
Cdd:TIGR00606 307 YHNHQRTVREKEREL---VDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgfe 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 920 ---DLERQVKEMEGILKRRYPNS--LPALILAASAAGDSVDRNTVEFMERRIKKLEADLEGKDEEAKK---SLRTMEQQF 991
Cdd:TIGR00606 384 rgpFSERQIKNFHTLVIERQEDEakTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKkqeELKFVIKEL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 992 QKMKIQYEqRLEEQEQLLAHRQKEAPQSQRNSSSR-LKALETELGDIKEAHQITVRKLEAEIDVLKHQNADLEH-----K 1065
Cdd:TIGR00606 464 QQLEGSSD-RILELDQELRKAERELSKAEKNSLTEtLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQmemltK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1066 KNDKGDQGLQSIEFQ-----VEQAQARAKLARLNEELAAKGREIQDLTKTVERLQKE-RRMMLSRQIPRSREETAAKRLK 1139
Cdd:TIGR00606 543 DKMDKDEQIRKIKSRhsdelTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKElASLEQNKNHINNELESKEEQLS 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1140 KDPNRGHGNAFPETLDGKLyhphtftdSHISEVLEENYRLRSELEGL------ILERSKLKMESEAAVCQLENSMKRVKD 1213
Cdd:TIGR00606 623 SYEDKLFDVCGSQDEESDL--------ERLKEEIEKSSKQRAMLAGAtavysqFITQLTDENQSCCPVCQRVFQTEAELQ 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1214 DAAAHIASLKASHEREIEKLlcqnaienssskVAELNRKIATQEVLLKHFQGQVNELQGKQESLAVSQVREEILQKQITK 1293
Cdd:TIGR00606 695 EFISDLQSKLRLAPDKLKST------------ESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 1294 L---LEELKEAKENHTPEMKHFMGLERKIKQMEMRHRQREQELQQIIQQTRQVVETEQNKEVEKWKRLAQLKNRELDKFR 1370
Cdd:TIGR00606 763 LkndIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVV 842
|
650
....*....|....*.
gi 147905039 1371 TELDSILDVLRELHRQ 1386
Cdd:TIGR00606 843 SKIELNRKLIQDQQEQ 858
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
697-1070 |
7.08e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 40.81 E-value: 7.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 697 GEKLKQIQKEIQEQETLLQGYQQENERLYNQVKDLQEQNKKNE--------ERMFKENQNLFSE-LASLK-EQMHKNHFL 766
Cdd:pfam13166 88 GEESIEIQEKIAKLKKEIKDHEEKLDAAEANLQKLDKEKEKLEadfldecwKKIKRKKNSALSEaLNGFKyEANFKSRLL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 767 sQAVENTEPTKNQSFTDLLAELRAAQKEKNHLMEDIKR---------------LKQDKQALEVDLEKVKRE---RDQAKD 828
Cdd:pfam13166 168 -REIEKDNFNAGVLLSDEDRKAALATVFSDNKPEIAPLtfnvidfdalekaeiLIQKVIGKSSAIEELIKNpdlADWVEQ 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 829 QIAYAT---------GEKLYE--IKILE----ETHKQEVSRLQKRLQWYAENQE-------LLDRDAARLREANEETEKL 886
Cdd:pfam13166 247 GLELHKahldtcpfcGQPLPAerKAALEahfdDEFTEFQNRLQKLIEKVESAISsllaqlpAVSDLASLLSAFELDVEDI 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 887 RLEIEKLktesgspatQQRLRSKERALDAKRiQDLERQVkEMEgilkrrypnSLPALILAASAAGDSVDRnTVEFMERRI 966
Cdd:pfam13166 327 ESEAEVL---------NSQLDGLRRALEAKR-KDPFKSI-ELD---------SVDAKIESINDLVASINE-LIAKHNEIT 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147905039 967 KKLEAdlegKDEEAKKSLRTMEQQFQKMKIqyeQRLEEQEQLLAHRQKEAPQSQRNSSSRLKALETELGDIKEA---HQI 1043
Cdd:pfam13166 386 DNFEE----EKNKAKKKLRLHLVEEFKSEI---DEYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKELEAQlrdHKP 458
|
410 420
....*....|....*....|....*..
gi 147905039 1044 TVRKLEAEIDVLKHQNADLEHKKNDKG 1070
Cdd:pfam13166 459 GADEINKLLKAFGFGELELSFNEEGKG 485
|
|
| |
