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Conserved domains on  [gi|35902926|ref|NP_919370|]
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zinc finger-like gene 1 [Danio rerio]

Protein Classification

zinc finger CCHC domain-containing protein( domain architecture ID 10443236)

zinc finger CCHC (ZCCHC) domain-containing protein contains a zinc knuckle or a zinc binding motif, CX2CX4HX4C, where X can be any amino acid, and may bind single-stranded RNA

Gene Ontology:  GO:0008270|GO:0003676
PubMed:  33787465|11179890|12665246

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCHC pfam00098
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 420-436 1.07e-04

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.


:

Pssm-ID: 395050 [Multi-domain]  Cd Length: 18  Bit Score: 39.05  E-value: 1.07e-04
                          10
                  ....*....|....*..
gi 35902926   420 GRCRNCNEEGHWARECK 436
Cdd:pfam00098   1 GKCYNCGEPGHIARDCP 17
 
Name Accession Description Interval E-value
zf-CCHC pfam00098
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 420-436 1.07e-04

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.


Pssm-ID: 395050 [Multi-domain]  Cd Length: 18  Bit Score: 39.05  E-value: 1.07e-04
                          10
                  ....*....|....*..
gi 35902926   420 GRCRNCNEEGHWARECK 436
Cdd:pfam00098   1 GKCYNCGEPGHIARDCP 17
ZnF_C2HC smart00343
zinc finger;
421-436 2.86e-04

zinc finger;


Pssm-ID: 197667 [Multi-domain]  Cd Length: 17  Bit Score: 37.81  E-value: 2.86e-04
                           10
                   ....*....|....*.
gi 35902926    421 RCRNCNEEGHWARECK 436
Cdd:smart00343   1 KCYNCGKEGHIARDCP 16
 
Name Accession Description Interval E-value
zf-CCHC pfam00098
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 420-436 1.07e-04

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.


Pssm-ID: 395050 [Multi-domain]  Cd Length: 18  Bit Score: 39.05  E-value: 1.07e-04
                          10
                  ....*....|....*..
gi 35902926   420 GRCRNCNEEGHWARECK 436
Cdd:pfam00098   1 GKCYNCGEPGHIARDCP 17
ZnF_C2HC smart00343
zinc finger;
421-436 2.86e-04

zinc finger;


Pssm-ID: 197667 [Multi-domain]  Cd Length: 17  Bit Score: 37.81  E-value: 2.86e-04
                           10
                   ....*....|....*.
gi 35902926    421 RCRNCNEEGHWARECK 436
Cdd:smart00343   1 KCYNCGKEGHIARDCP 16
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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