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Conserved domains on  [gi|33356550|ref|NP_872620|]
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G patch domain-containing protein 4 isoform 2 [Homo sapiens]

Protein Classification

G patch domain-containing protein( domain architecture ID 10481954)

G patch domain-containing protein similar to Saccharomyces cerevisiae protein PXR1 that is involved in rRNA-processing at A0, A1 and A2 sites through its action in U18 and U24 snoRNA 3'-end final trimming, and pre-mRNA-splicing factor SPP382 that is involved in pre-mRNA splicing and spliceosome disassembly

Gene Ontology:  GO:0003676
PubMed:  10470032|33857358

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 8-55 3.73e-08

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


:

Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 49.04  E-value: 3.73e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 33356550     8 KSRGMKFaeeqLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHD 55
Cdd:pfam01585   2 SNIGFKL----LQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGAE 45
 
Name Accession Description Interval E-value
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 8-55 3.73e-08

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 49.04  E-value: 3.73e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 33356550     8 KSRGMKFaeeqLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHD 55
Cdd:pfam01585   2 SNIGFKL----LQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGAE 45
G_patch smart00443
glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in ...
 7-54 6.43e-06

glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.


Pssm-ID: 197727 [Multi-domain]  Cd Length: 47  Bit Score: 42.92  E-value: 6.43e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 33356550      7 VKSRGMKfaeeQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGH 54
Cdd:smart00443   3 TSNIGAK----LLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGA 46
 
Name Accession Description Interval E-value
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 8-55 3.73e-08

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 49.04  E-value: 3.73e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 33356550     8 KSRGMKFaeeqLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHD 55
Cdd:pfam01585   2 SNIGFKL----LQKMGWKEGQGLGKNEQGIAEPIEAKIKKDRRGLGAE 45
G_patch smart00443
glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in ...
 7-54 6.43e-06

glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.


Pssm-ID: 197727 [Multi-domain]  Cd Length: 47  Bit Score: 42.92  E-value: 6.43e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 33356550      7 VKSRGMKfaeeQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGH 54
Cdd:smart00443   3 TSNIGAK----LLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGA 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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