VQ motif-containing protein [Arabidopsis thaliana]
List of domain hits
Name | Accession | Description | Interval | E-value | ||
VQ super family | cl05313 | VQ motif; This short motif is found in a variety of plant proteins. These proteins vary ... |
48-70 | 1.77e-03 | ||
VQ motif; This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Swiss:Q9LDH1. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.). The actual alignment was detected with superfamily member pfam05678: Pssm-ID: 461711 Cd Length: 28 Bit Score: 35.05 E-value: 1.77e-03
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Name | Accession | Description | Interval | E-value | ||
VQ | pfam05678 | VQ motif; This short motif is found in a variety of plant proteins. These proteins vary ... |
48-70 | 1.77e-03 | ||
VQ motif; This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Swiss:Q9LDH1. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.). Pssm-ID: 461711 Cd Length: 28 Bit Score: 35.05 E-value: 1.77e-03
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Name | Accession | Description | Interval | E-value | ||
VQ | pfam05678 | VQ motif; This short motif is found in a variety of plant proteins. These proteins vary ... |
48-70 | 1.77e-03 | ||
VQ motif; This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Swiss:Q9LDH1. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.). Pssm-ID: 461711 Cd Length: 28 Bit Score: 35.05 E-value: 1.77e-03
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Blast search parameters | ||||
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