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Conserved domains on  [gi|30694675|ref|NP_851133|]
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Disease resistance protein (TIR-NBS-LRR class) [Arabidopsis thaliana]

Protein Classification

PLN03210 and WRKY domain-containing protein( domain architecture ID 13329335)

PLN03210 and WRKY domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03210 super family cl33662
Resistant to P. syringae 6; Provisional
 14-1050 1.20e-111

Resistant to P. syringae 6; Provisional


The actual alignment was detected with superfamily member PLN03210:

Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 379.99  E-value: 1.20e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675    14 EEVRYSFVSHLSKALQRKGV---NDVFIDSDDSLSNESQSMVERARVSVMILPGNRTVS---LDKLVKVLDCQKNKDQVV 87
Cdd:PLN03210   22 EDVRITFLSHFLKELDRKLIiafKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSswcLNELLEIVRCKEELGQLV 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675    88 VPVLYGVRSS-------------------ETE-----WLSALDSKGFSSVHHSRKECSDSQLVKETVRDVYEKLF----- 138
Cdd:PLN03210  102 IPVFYGLDPShvrkqtgdfgeafektcqnKTEdekiqWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNltpsn 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   139 -YMERIGIYSKLLEIEKMINKQPLDIRCVGIWGMPGIGKTTLAKAVFDQMSGEFDAHCFI---------EDYTKA-IQEK 207
Cdd:PLN03210  182 dFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIdrafisksmEIYSSAnPDDY 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   208 GVYCLLEEQFLKENAGASGT-VTKLSLLRDRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIIITSKDKSVFRLCR 286
Cdd:PLN03210  262 NMKLHLQRAFLSEILDKKDIkIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHG 341

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   287 VNQIYEVQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRPPEMEIaFLKLKECPPA 366
Cdd:PLN03210  342 IDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDM-LPRLRNGLDG 420

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   367 IFVDAIKSSYDTLNDR-EKNIFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISENRVRMHNLIQDVGRQ 445
Cdd:PLN03210  421 KIEKTLRVSYDGLNNKkDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKE 500

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   446 IINRETRQTKRRSRLWEPCSIKYLLEDkeqneNEEQKTTFERAQVPEEIEGMFLDTSnlsfdikhvAFDNMLNLRLFKIY 525
Cdd:PLN03210  501 IVRAQSNEPGEREFLVDAKDICDVLED-----NTGTKKVLGITLDIDEIDELHIHEN---------AFKGMRNLLFLKFY 566

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   526 SSN-PEVHHVNNFLKGSLSSLPNVLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQ 604
Cdd:PLN03210  567 TKKwDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN 646

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   605 LVDIDDLLKAQNLEVVDLQGCTRLQSFPATGQLL------------HLRVV------------NLSGCTEIKSFPEIPPN 660
Cdd:PLN03210  647 LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLnkledldmsrceNLEILptginlkslyrlNLSGCSRLKSFPDISTN 726

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   661 IETLNLQGTGIIELPLSIVKPNYRELlnLLAEI-------------PGLSGVS-NLEQSDLKPLTSLMKISTSYQNPGKL 726
Cdd:PLN03210  727 ISWLDLDETAIEEFPSNLRLENLDEL--ILCEMkseklwervqpltPLMTMLSpSLTRLFLSDIPSLVELPSSIQNLHKL 804

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   727 SCLELNDCSRLRSLPNMVNLELLKALDLSGCSELETIQGFPRNLKELYLVGTAVRQVPQLPQS---LEFFNAHGCVSLKS 803
Cdd:PLN03210  805 EHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKfsnLSFLDMNGCNNLQR 884

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   804 IRLDFKKLPVHYT--FSNCFDLSPQVVNDfLVQAMANV---IAKHIPRERHVTGFSQKTVQRSSRDSQQELNKTLAFSFC 878
Cdd:PLN03210  885 VSLNISKLKHLETvdFSDCGALTEASWNG-SPSEVAMAtdnIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGE 963

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   879 -APSH-ANQNSKLDLqpgsSSMTRLDPSWRNTLVGFAMLVQVAFSEGYCDDTDFGISCVCKWKNKEGhSHRREINLHCWA 956
Cdd:PLN03210  964 eVPSYfTHRTTGASL----TNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLG-NHFDSPYQPHVF 1038

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   957 LGKavERDHTFVFFDVNMRPDTDEGNDPDIWADLVVFEFFPVNKqrkplNDSCTVTRCGVRLITAVNcNTSIENISPVLS 1036
Cdd:PLN03210 1039 SVT--KKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNK-----NSQLKLKGCGIRLSEDDS-SLNNTLPNVEEA 1110

                        1130
                  ....*....|....
gi 30694675  1037 LDPMEVSGNEDEEV 1050
Cdd:PLN03210 1111 DDDNPVNGSEHWED 1124
WRKY smart00774
DNA binding domain; The WRKY domain is a DNA binding domain found in one or two copies in a ...
 1181-1237 9.34e-32

DNA binding domain; The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.


:

Pssm-ID: 214815  Cd Length: 59  Bit Score: 118.36  E-value: 9.34e-32
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 30694675    1181 DLWVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNH 1237
Cdd:smart00774    3 DGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59
PLN03210 super family cl33662
Resistant to P. syringae 6; Provisional
 1048-1132 3.29e-11

Resistant to P. syringae 6; Provisional


The actual alignment was detected with superfamily member PLN03210:

Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 68.36  E-value: 3.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  1048 EEVLRVRYAGLQEIY-KALFLYIAGLFNDEDVGLVAPLIANIiDMDVSYGLKVLAYRSLIRVSSNgEIVMHYLLRQMGKE 1126
Cdd:PLN03210  423 EKTLRVSYDGLNNKKdKAIFRHIACLFNGEKVNDIKLLLANS-DLDVNIGLKNLVDKSLIHVRED-IVEMHSLLQEMGKE 500


                  ....*.
gi 30694675  1127 ILHTES 1132
Cdd:PLN03210  501 IVRAQS 506
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 14-1050 1.20e-111

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 379.99  E-value: 1.20e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675    14 EEVRYSFVSHLSKALQRKGV---NDVFIDSDDSLSNESQSMVERARVSVMILPGNRTVS---LDKLVKVLDCQKNKDQVV 87
Cdd:PLN03210   22 EDVRITFLSHFLKELDRKLIiafKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSswcLNELLEIVRCKEELGQLV 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675    88 VPVLYGVRSS-------------------ETE-----WLSALDSKGFSSVHHSRKECSDSQLVKETVRDVYEKLF----- 138
Cdd:PLN03210  102 IPVFYGLDPShvrkqtgdfgeafektcqnKTEdekiqWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNltpsn 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   139 -YMERIGIYSKLLEIEKMINKQPLDIRCVGIWGMPGIGKTTLAKAVFDQMSGEFDAHCFI---------EDYTKA-IQEK 207
Cdd:PLN03210  182 dFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIdrafisksmEIYSSAnPDDY 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   208 GVYCLLEEQFLKENAGASGT-VTKLSLLRDRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIIITSKDKSVFRLCR 286
Cdd:PLN03210  262 NMKLHLQRAFLSEILDKKDIkIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHG 341

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   287 VNQIYEVQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRPPEMEIaFLKLKECPPA 366
Cdd:PLN03210  342 IDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDM-LPRLRNGLDG 420

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   367 IFVDAIKSSYDTLNDR-EKNIFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISENRVRMHNLIQDVGRQ 445
Cdd:PLN03210  421 KIEKTLRVSYDGLNNKkDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKE 500

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   446 IINRETRQTKRRSRLWEPCSIKYLLEDkeqneNEEQKTTFERAQVPEEIEGMFLDTSnlsfdikhvAFDNMLNLRLFKIY 525
Cdd:PLN03210  501 IVRAQSNEPGEREFLVDAKDICDVLED-----NTGTKKVLGITLDIDEIDELHIHEN---------AFKGMRNLLFLKFY 566

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   526 SSN-PEVHHVNNFLKGSLSSLPNVLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQ 604
Cdd:PLN03210  567 TKKwDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN 646

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   605 LVDIDDLLKAQNLEVVDLQGCTRLQSFPATGQLL------------HLRVV------------NLSGCTEIKSFPEIPPN 660
Cdd:PLN03210  647 LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLnkledldmsrceNLEILptginlkslyrlNLSGCSRLKSFPDISTN 726

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   661 IETLNLQGTGIIELPLSIVKPNYRELlnLLAEI-------------PGLSGVS-NLEQSDLKPLTSLMKISTSYQNPGKL 726
Cdd:PLN03210  727 ISWLDLDETAIEEFPSNLRLENLDEL--ILCEMkseklwervqpltPLMTMLSpSLTRLFLSDIPSLVELPSSIQNLHKL 804

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   727 SCLELNDCSRLRSLPNMVNLELLKALDLSGCSELETIQGFPRNLKELYLVGTAVRQVPQLPQS---LEFFNAHGCVSLKS 803
Cdd:PLN03210  805 EHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKfsnLSFLDMNGCNNLQR 884

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   804 IRLDFKKLPVHYT--FSNCFDLSPQVVNDfLVQAMANV---IAKHIPRERHVTGFSQKTVQRSSRDSQQELNKTLAFSFC 878
Cdd:PLN03210  885 VSLNISKLKHLETvdFSDCGALTEASWNG-SPSEVAMAtdnIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGE 963

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   879 -APSH-ANQNSKLDLqpgsSSMTRLDPSWRNTLVGFAMLVQVAFSEGYCDDTDFGISCVCKWKNKEGhSHRREINLHCWA 956
Cdd:PLN03210  964 eVPSYfTHRTTGASL----TNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLG-NHFDSPYQPHVF 1038

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   957 LGKavERDHTFVFFDVNMRPDTDEGNDPDIWADLVVFEFFPVNKqrkplNDSCTVTRCGVRLITAVNcNTSIENISPVLS 1036
Cdd:PLN03210 1039 SVT--KKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNK-----NSQLKLKGCGIRLSEDDS-SLNNTLPNVEEA 1110

                        1130
                  ....*....|....
gi 30694675  1037 LDPMEVSGNEDEEV 1050
Cdd:PLN03210 1111 DDDNPVNGSEHWED 1124
WRKY smart00774
DNA binding domain; The WRKY domain is a DNA binding domain found in one or two copies in a ...
 1181-1237 9.34e-32

DNA binding domain; The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.


Pssm-ID: 214815  Cd Length: 59  Bit Score: 118.36  E-value: 9.34e-32
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 30694675    1181 DLWVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNH 1237
Cdd:smart00774    3 DGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59
WRKY pfam03106
WRKY DNA -binding domain;
1181-1237 5.29e-31

WRKY DNA -binding domain;


Pssm-ID: 460808  Cd Length: 57  Bit Score: 116.04  E-value: 5.29e-31
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 30694675   1181 DLWVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNH 1237
Cdd:pfam03106    1 DGYSWRKYGQKQIKGSKFPRSYYRCTHKPGCPAKKQVQRSPDDPSIFEVTYEGEHTH 57
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 7-137 1.61e-14

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 72.78  E-value: 1.61e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675      7 IVYISCIEE-VRYSFVSHLSKALQRKGVNdVFIDSDD-----SLSNESQSMVERARVSVMILPGNRTVS---LDKLVKVL 77
Cdd:pfam01582    2 DVFLSFRGSdTREWFVSHLLKELKQKGIK-LFIDDRDlepgeAIAPELLSAIEKSRRSVVVLSPNYASSgwcLDELVKIL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675     78 DCQKNKDQVVVPVLYGVRSSETEWLSALDSKGF----------------------SSVHHSRKECSDSQLVKETVRDVYE 135
Cdd:pfam01582   81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFkkhkkvlteekvlkwrgalnevANIWHSKSVSDESKFWKKIAYDISN 160


                   ..
gi 30694675    136 KL 137
Cdd:pfam01582  161 KL 162
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
516-780 1.35e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 71.50  E-value: 1.35e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  516 MLNLRLFKIYSSNPEVHHVNNFLKGSLSSLPNVLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLK 595
Cdd:COG4886   12 LLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTD 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  596 TIRLCHSQQLV--DIDDLLKAQNLEVVDLQGcTRLQSFPAT-GQLLHLRVVNLSGcTEIKSFPE-IP--PNIETLNLQGT 669
Cdd:COG4886   92 LGDLTNLTELDlsGNEELSNLTNLESLDLSG-NQLTDLPEElANLTNLKELDLSN-NQLTDLPEpLGnlTNLKSLDLSNN 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  670 GIIELPLSIVK-PNYRELL---NLLAEIPG-LSGVSNLEQSDLK--PLTSLmkiSTSYQNPGKLSCLELNDCsRLRSLPN 742
Cdd:COG4886  170 QLTDLPEELGNlTNLKELDlsnNQITDLPEpLGNLTNLEELDLSgnQLTDL---PEPLANLTNLETLDLSNN-QLTDLPE 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 30694675  743 MVNLELLKALDLSGC--SELETIQGFPrNLKELYLVGTAV 780
Cdd:COG4886  246 LGNLTNLEELDLSNNqlTDLPPLANLT-NLKTLDLSNNQL 284
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 1048-1132 3.29e-11

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 68.36  E-value: 3.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  1048 EEVLRVRYAGLQEIY-KALFLYIAGLFNDEDVGLVAPLIANIiDMDVSYGLKVLAYRSLIRVSSNgEIVMHYLLRQMGKE 1126
Cdd:PLN03210  423 EKTLRVSYDGLNNKKdKAIFRHIACLFNGEKVNDIKLLLANS-DLDVNIGLKNLVDKSLIHVRED-IVEMHSLLQEMGKE 500


                  ....*.
gi 30694675  1127 ILHTES 1132
Cdd:PLN03210  501 IVRAQS 506
TIR smart00255
Toll - interleukin 1 - resistance;
8-94 7.49e-05

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 44.24  E-value: 7.49e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675       8 VYIS--CIEEVRYSFVSHLSKALQRKGVNdVFIDSDDSLSNESQSM---VERARVSVMIL-PG--NRTVSLDKLVKVLDC 79
Cdd:smart00255    4 VFISysGKEDVRNEFLSHLLEKLRGYGLC-VFIDDFEPGGGDLEEIdeaIEKSRIAIVVLsPNyaESEWCLDELVAALEN 82

                            90
                    ....*....|....*.
gi 30694675      80 QKNKDQ-VVVPVLYGV 94
Cdd:smart00255   83 ALEEGGlRVIPIFYEV 98
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 14-1050 1.20e-111

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 379.99  E-value: 1.20e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675    14 EEVRYSFVSHLSKALQRKGV---NDVFIDSDDSLSNESQSMVERARVSVMILPGNRTVS---LDKLVKVLDCQKNKDQVV 87
Cdd:PLN03210   22 EDVRITFLSHFLKELDRKLIiafKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSswcLNELLEIVRCKEELGQLV 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675    88 VPVLYGVRSS-------------------ETE-----WLSALDSKGFSSVHHSRKECSDSQLVKETVRDVYEKLF----- 138
Cdd:PLN03210  102 IPVFYGLDPShvrkqtgdfgeafektcqnKTEdekiqWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNltpsn 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   139 -YMERIGIYSKLLEIEKMINKQPLDIRCVGIWGMPGIGKTTLAKAVFDQMSGEFDAHCFI---------EDYTKA-IQEK 207
Cdd:PLN03210  182 dFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIdrafisksmEIYSSAnPDDY 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   208 GVYCLLEEQFLKENAGASGT-VTKLSLLRDRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIIITSKDKSVFRLCR 286
Cdd:PLN03210  262 NMKLHLQRAFLSEILDKKDIkIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHG 341

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   287 VNQIYEVQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRPPEMEIaFLKLKECPPA 366
Cdd:PLN03210  342 IDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDM-LPRLRNGLDG 420

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   367 IFVDAIKSSYDTLNDR-EKNIFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISENRVRMHNLIQDVGRQ 445
Cdd:PLN03210  421 KIEKTLRVSYDGLNNKkDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKE 500

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   446 IINRETRQTKRRSRLWEPCSIKYLLEDkeqneNEEQKTTFERAQVPEEIEGMFLDTSnlsfdikhvAFDNMLNLRLFKIY 525
Cdd:PLN03210  501 IVRAQSNEPGEREFLVDAKDICDVLED-----NTGTKKVLGITLDIDEIDELHIHEN---------AFKGMRNLLFLKFY 566

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   526 SSN-PEVHHVNNFLKGSLSSLPNVLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQ 604
Cdd:PLN03210  567 TKKwDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN 646

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   605 LVDIDDLLKAQNLEVVDLQGCTRLQSFPATGQLL------------HLRVV------------NLSGCTEIKSFPEIPPN 660
Cdd:PLN03210  647 LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLnkledldmsrceNLEILptginlkslyrlNLSGCSRLKSFPDISTN 726

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   661 IETLNLQGTGIIELPLSIVKPNYRELlnLLAEI-------------PGLSGVS-NLEQSDLKPLTSLMKISTSYQNPGKL 726
Cdd:PLN03210  727 ISWLDLDETAIEEFPSNLRLENLDEL--ILCEMkseklwervqpltPLMTMLSpSLTRLFLSDIPSLVELPSSIQNLHKL 804

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   727 SCLELNDCSRLRSLPNMVNLELLKALDLSGCSELETIQGFPRNLKELYLVGTAVRQVPQLPQS---LEFFNAHGCVSLKS 803
Cdd:PLN03210  805 EHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKfsnLSFLDMNGCNNLQR 884

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   804 IRLDFKKLPVHYT--FSNCFDLSPQVVNDfLVQAMANV---IAKHIPRERHVTGFSQKTVQRSSRDSQQELNKTLAFSFC 878
Cdd:PLN03210  885 VSLNISKLKHLETvdFSDCGALTEASWNG-SPSEVAMAtdnIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGE 963

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   879 -APSH-ANQNSKLDLqpgsSSMTRLDPSWRNTLVGFAMLVQVAFSEGYCDDTDFGISCVCKWKNKEGhSHRREINLHCWA 956
Cdd:PLN03210  964 eVPSYfTHRTTGASL----TNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLG-NHFDSPYQPHVF 1038

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   957 LGKavERDHTFVFFDVNMRPDTDEGNDPDIWADLVVFEFFPVNKqrkplNDSCTVTRCGVRLITAVNcNTSIENISPVLS 1036
Cdd:PLN03210 1039 SVT--KKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNK-----NSQLKLKGCGIRLSEDDS-SLNNTLPNVEEA 1110

                        1130
                  ....*....|....
gi 30694675  1037 LDPMEVSGNEDEEV 1050
Cdd:PLN03210 1111 DDDNPVNGSEHWED 1124
WRKY smart00774
DNA binding domain; The WRKY domain is a DNA binding domain found in one or two copies in a ...
 1181-1237 9.34e-32

DNA binding domain; The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.


Pssm-ID: 214815  Cd Length: 59  Bit Score: 118.36  E-value: 9.34e-32
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 30694675    1181 DLWVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNH 1237
Cdd:smart00774    3 DGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59
WRKY pfam03106
WRKY DNA -binding domain;
1181-1237 5.29e-31

WRKY DNA -binding domain;


Pssm-ID: 460808  Cd Length: 57  Bit Score: 116.04  E-value: 5.29e-31
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 30694675   1181 DLWVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNH 1237
Cdd:pfam03106    1 DGYSWRKYGQKQIKGSKFPRSYYRCTHKPGCPAKKQVQRSPDDPSIFEVTYEGEHTH 57
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 7-137 1.61e-14

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 72.78  E-value: 1.61e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675      7 IVYISCIEE-VRYSFVSHLSKALQRKGVNdVFIDSDD-----SLSNESQSMVERARVSVMILPGNRTVS---LDKLVKVL 77
Cdd:pfam01582    2 DVFLSFRGSdTREWFVSHLLKELKQKGIK-LFIDDRDlepgeAIAPELLSAIEKSRRSVVVLSPNYASSgwcLDELVKIL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675     78 DCQKNKDQVVVPVLYGVRSSETEWLSALDSKGF----------------------SSVHHSRKECSDSQLVKETVRDVYE 135
Cdd:pfam01582   81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFkkhkkvlteekvlkwrgalnevANIWHSKSVSDESKFWKKIAYDISN 160


                   ..
gi 30694675    136 KL 137
Cdd:pfam01582  161 KL 162
NB-ARC pfam00931
NB-ARC domain;
152-379 7.70e-14

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 72.80  E-value: 7.70e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675    152 IEKMINK--QPLDIRC----VGIWGMPGIGKTTLAKAVF---DQMSGEFDAHCFIEDYTKAIQEKGVYCLLEEqFLKENA 222
Cdd:pfam00931    1 REDMVEKviGKLSEKDepgiVGIHGMGGVGKTTLAAQIFndfDEVEGHFDSVAWVVVSKTFTISTLQQTILQN-LGLSED 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675    223 GAS--GTVTKLSLLRDRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIIITSKDKSVFRlcRVNQIY---EVQGLN 297
Cdd:pfam00931   80 DWDnkEEGELARKIRRALLTKRFLLVLDDVWDEEDWDKIGIPLPDRENGCRVLLTTRSEEVAG--RVGGPSdphEVELLE 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675    298 EKEALQLFSL---------CASIDDMAEqnlhevsmKVIKYANGHPLALNLYGRELMGKKRPPEMEIAFLKLkECPPAIF 368
Cdd:pfam00931  158 PDEAWELFENkvfpktlgeCELLEDVAK--------EIVEKCRGLPLALKVLGGLLSCKKTVEEWKHVYDVL-QSELKSN 228

                          250
                   ....*....|.
gi 30694675    369 VDAIKSSYDTL 379
Cdd:pfam00931  229 SYSLNSVRSIL 239
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
516-780 1.35e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 71.50  E-value: 1.35e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  516 MLNLRLFKIYSSNPEVHHVNNFLKGSLSSLPNVLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLK 595
Cdd:COG4886   12 LLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTD 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  596 TIRLCHSQQLV--DIDDLLKAQNLEVVDLQGcTRLQSFPAT-GQLLHLRVVNLSGcTEIKSFPE-IP--PNIETLNLQGT 669
Cdd:COG4886   92 LGDLTNLTELDlsGNEELSNLTNLESLDLSG-NQLTDLPEElANLTNLKELDLSN-NQLTDLPEpLGnlTNLKSLDLSNN 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  670 GIIELPLSIVK-PNYRELL---NLLAEIPG-LSGVSNLEQSDLK--PLTSLmkiSTSYQNPGKLSCLELNDCsRLRSLPN 742
Cdd:COG4886  170 QLTDLPEELGNlTNLKELDlsnNQITDLPEpLGNLTNLEELDLSgnQLTDL---PEPLANLTNLETLDLSNN-QLTDLPE 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 30694675  743 MVNLELLKALDLSGC--SELETIQGFPrNLKELYLVGTAV 780
Cdd:COG4886  246 LGNLTNLEELDLSNNqlTDLPPLANLT-NLKTLDLSNNQL 284
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 1048-1132 3.29e-11

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 68.36  E-value: 3.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  1048 EEVLRVRYAGLQEIY-KALFLYIAGLFNDEDVGLVAPLIANIiDMDVSYGLKVLAYRSLIRVSSNgEIVMHYLLRQMGKE 1126
Cdd:PLN03210  423 EKTLRVSYDGLNNKKdKAIFRHIACLFNGEKVNDIKLLLANS-DLDVNIGLKNLVDKSLIHVRED-IVEMHSLLQEMGKE 500


                  ....*.
gi 30694675  1127 ILHTES 1132
Cdd:PLN03210  501 IVRAQS 506
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
558-797 1.15e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 62.26  E-value: 1.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  558 PLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLVDIDDLLKAQNLEVVDLQGCTRLQSFPAT-GQ 636
Cdd:COG4886   15 LLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDlGD 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  637 LLHLRVVNLSGCTEIKSFPeippNIETLNLQGTGIIELPLSIVKPNYRELLNL----LAEIP-GLSGVSNLEQSDLKpLT 711
Cdd:COG4886   95 LTNLTELDLSGNEELSNLT----NLESLDLSGNQLTDLPEELANLTNLKELDLsnnqLTDLPePLGNLTNLKSLDLS-NN 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  712 SLMKISTSYQNPGKLSCLELNDCsRLRSLPNMV-NLELLKALDLSGC--SEL-ETIQGFPrNLKELYLVGTAVRQVPQLP 787
Cdd:COG4886  170 QLTDLPEELGNLTNLKELDLSNN-QITDLPEPLgNLTNLEELDLSGNqlTDLpEPLANLT-NLETLDLSNNQLTDLPELG 247

                        250
                 ....*....|..
gi 30694675  788 Q--SLEFFNAHG 797
Cdd:COG4886  248 NltNLEELDLSN 259
LRR_3 pfam07725
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the ...
 570-589 3.10e-06

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model.


Pssm-ID: 429621 [Multi-domain]  Cd Length: 20  Bit Score: 44.64  E-value: 3.10e-06
                           10        20
                   ....*....|....*....|
gi 30694675    570 HLVEINMPYSQLKKLWGGTK 589
Cdd:pfam07725    1 NLVELNMPYSKLEKLWEGVK 20
NACHT COG5635
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
28-300 1.76e-05

Predicted NTPase, NACHT family domain [Signal transduction mechanisms];


Pssm-ID: 444362 [Multi-domain]  Cd Length: 935  Bit Score: 49.42  E-value: 1.76e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   28 LQRKGVNDVFIDSDDSLSNESQSMVERARVSVMILPGNRTVSLDKLVKVLDCQKNKDQVVVPVLYGVRSSETEWLSALDS 107
Cdd:COG5635   51 LLADLGALLALVSRSALSAAALLARALSALLLVLLLLESLLLLLLLLLLLAEALLALLELAALLKAVLLSLSGGSDLVLL 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  108 KGFSSVHHSRKE-CSDSQLVKETVRDVYEKLFYMERIGIYSKLLEIEkminkqpLDIRCVGIWGMPGIGKTTLAKAVFDQ 186
Cdd:COG5635  131 LSESDLLLALLIlLLDADGLLVSLDDLYVPLNLLERIESLKRLELLE-------AKKKRLLILGEPGSGKTTLLRYLALE 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  187 MSGEFDAHC-----FIE--DYTKaiqEKGVYCLLEEQFLKENAGASGTVTKLsllrdrLNNKRVLVVLD----------- 248
Cdd:COG5635  204 LAERYLDAEdpipiLIElrDLAE---EASLEDLLAEALEKRGGEPEDALERL------LRNGRLLLLLDgldevpdeadr 274

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 30694675  249 -DVRSPLvvESFLGGFdwfgPKSLIIITS----KDKSVFRLCRVnqiYEVQGLNEKE 300
Cdd:COG5635  275 dEVLNQL--RRFLERY----PKARVIITSrpegYDSSELEGFEV---LELAPLSDEQ 322
TIR smart00255
Toll - interleukin 1 - resistance;
8-94 7.49e-05

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 44.24  E-value: 7.49e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675       8 VYIS--CIEEVRYSFVSHLSKALQRKGVNdVFIDSDDSLSNESQSM---VERARVSVMIL-PG--NRTVSLDKLVKVLDC 79
Cdd:smart00255    4 VFISysGKEDVRNEFLSHLLEKLRGYGLC-VFIDDFEPGGGDLEEIdeaIEKSRIAIVVLsPNyaESEWCLDELVAALEN 82

                            90
                    ....*....|....*.
gi 30694675      80 QKNKDQ-VVVPVLYGV 94
Cdd:smart00255   83 ALEEGGlRVIPIFYEV 98
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
628-841 2.71e-04

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 45.54  E-value: 2.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   628 LQSFPATGQllHLRVVNLSGcTEIKSFPEIPPNIETLNLQGTGIIELP------------------LSIVKPNYRELL-- 687
Cdd:PRK15387  234 LTSLPALPP--ELRTLEVSG-NQLTSLPVLPPGLLELSIFSNPLTHLPalpsglcklwifgnqltsLPVLPPGLQELSvs 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   688 -NLLAEIPGL-SGVSNLEQSDlKPLTSLMKIstsyqnPGKLSCLELNDcSRLRSLPNMVNlELLKALDLSgcSELETIQG 765
Cdd:PRK15387  311 dNQLASLPALpSELCKLWAYN-NQLTSLPTL------PSGLQELSVSD-NQLASLPTLPS-ELYKLWAYN--NRLTSLPA 379

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675   766 FPRNLKELYLVGTAVRQVPQLPQSLEFFNA------------HGCVSLKSIRLDFKKLP---VHYTFSNCFDLSPQVVND 830
Cdd:PRK15387  380 LPSGLKELIVSGNRLTSLPVLPSELKELMVsgnrltslpmlpSGLLSLSVYRNQLTRLPeslIHLSSETTVNLEGNPLSE 459

                         250
                  ....*....|.
gi 30694675   831 FLVQAMANVIA 841
Cdd:PRK15387  460 RTLQALREITS 470
CDC6 COG1474
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
168-250 7.49e-04

Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];


Pssm-ID: 441083 [Multi-domain]  Cd Length: 389  Bit Score: 43.68  E-value: 7.49e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675  168 IWGMPGIGKTTLAKAVFDQMSGEFDAH----------CFIEDYTKAIqekgVYCLLEEQFLKENAGASGTVTK--LSLLR 235
Cdd:COG1474   56 IYGPTGTGKTAVAKYVLEELEEEAEERgvdvrvvyvnCRQASTRYRV----LSRILEELGSGEDIPSTGLSTDelFDRLY 131

                         90
                 ....*....|....*..
gi 30694675  236 DRLN--NKRVLVVLDDV 250
Cdd:COG1474  132 EALDerDGVLVVVLDEI 148
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 164-274 1.69e-03

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 40.95  E-value: 1.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694675    164 RCVGIWGMPGIGKTTLAKAVFDQ--------MSGEFDAHCFIEDYTKAIQEKGVYCLLE--------EQFLKENAGASGT 227
Cdd:pfam13191   25 PSVLLTGEAGTGKTTLLRELLRAlerdggyfLRGKCDENLPYSPLLEALTREGLLRQLLdelessllEAWRAALLEALAP 104

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 30694675    228 VTKLSL-LRDRLNN--KRVLVVLDDVRSPLVVesFLGGFDWFGPKSLIII 274
Cdd:pfam13191  105 VPELPGdLAERLLDllLRLLDLLARGERPLVL--VLDDLQWADEASLQLL 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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