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Conserved domains on  [gi|30694148|ref|NP_850706|]
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chlorophyll a-b binding protein 6 [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding domain-containing protein( domain architecture ID 859)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN00089 super family cl02879
fucoxanthin-chlorophyll a/c binding protein; Provisional
 1-148 1.58e-98

fucoxanthin-chlorophyll a/c binding protein; Provisional


The actual alignment was detected with superfamily member PLN00099:

Pssm-ID: 470693  Cd Length: 243  Bit Score: 283.84  E-value: 1.58e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148    1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAgVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANL 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASS-VPLPNANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENL 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30694148   81 ERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLA 148
Cdd:PLN00099  80 ERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLA 147
 
Name Accession Description Interval E-value
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 1-148 1.58e-98

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 283.84  E-value: 1.58e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148    1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAgVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANL 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASS-VPLPNANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENL 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30694148   81 ERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLA 148
Cdd:PLN00099  80 ERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLA 147
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
55-147 9.70e-30

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 106.24  E-value: 9.70e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148    55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAAlPGGQATYLGNPVP 134
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFE-AGAVALHAQSVPT 80

                          90
                  ....*....|...
gi 30694148   135 WGTLPTILAIEFL 147
Cdd:pfam00504  81 LLALQILLLMGFL 93
 
Name Accession Description Interval E-value
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 1-148 1.58e-98

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 283.84  E-value: 1.58e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148    1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAgVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANL 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASS-VPLPNANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENL 79

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30694148   81 ERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLA 148
Cdd:PLN00099  80 ERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLA 147
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
55-147 9.70e-30

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 106.24  E-value: 9.70e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148    55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAAlPGGQATYLGNPVP 134
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFE-AGAVALHAQSVPT 80

                          90
                  ....*....|...
gi 30694148   135 WGTLPTILAIEFL 147
Cdd:pfam00504  81 LLALQILLLMGFL 93
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 48-147 2.17e-23

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 92.28  E-value: 2.17e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWaaLPGGQAT 127
Cdd:PLN00101  56 WLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQW--YDAGKAE 133

                         90       100
                 ....*....|....*....|
gi 30694148  128 YLGNPvpwgtlPTILAIEFL 147
Cdd:PLN00101 134 YFASS------STLFVIEFI 147
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 48-124 2.62e-22

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 89.30  E-value: 2.62e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL------GYGNWVKAQEWAA- 120
Cdd:PLN00097  47 WLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLtkigmaDLPNWIDAAKWDGy 126


                 ....*
gi 30694148  121 -LPGG 124
Cdd:PLN00097 127 wAGAG 131
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 1-107 2.89e-22

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 89.17  E-value: 2.89e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148    1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANL 80
Cdd:PLN00147   1 AVSMAGGTTGGFLHQPRDSSSHCTRSISSVAASSGGINPVVAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESL 80

                         90       100
                 ....*....|....*....|....*..
gi 30694148   81 ERYKESELIHCRWAMLAVPGILVPEAL 107
Cdd:PLN00147  81 KWYVQAELVHSRFAMAGVAGILFTDLL 107
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 27-158 7.06e-22

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 88.01  E-value: 7.06e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148   27 VSAGVPLPNAGNVG-RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPE 105
Cdd:PLN00100  16 VSAGVSTTRRPRVRvAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTD 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 30694148  106 ALGYGNWvkaqeWAAlpgGQATYLGNpvpwgtLPTILAIEfLAHLTLLDTRRT 158
Cdd:PLN00100  96 AVGLPKF-----WEA---GAEKYGLD------LQTLVLIQ-VVVMAVLEAARY 133
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 48-107 3.43e-21

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 86.89  E-value: 3.43e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Cdd:PLN00098  65 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECL 124
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 55-138 2.82e-18

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 78.82  E-value: 2.82e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148   55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAqewAALPGGQAtylgnPVP 134
Cdd:PLN00170  67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFS 138


                 ....
gi 30694148  135 WGTL 138
Cdd:PLN00170 139 FGSL 142
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 48-147 2.52e-17

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 76.75  E-value: 2.52e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA-------------------------------------------NLERYK 84
Cdd:PLN00187  55 WFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEylqfdldsldqnlaknlagdvigtrteaseikstpfqpysevfGLQRFR 134

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30694148   85 ESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGgqATYLGNPVPWgTLPTILAIEFL 147
Cdd:PLN00187 135 ECELIHGRWAMLATLGALSVEALTGVTWQDAGKVELVDG--SSYLGQPLPF-SITTLIWIEVL 194
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 55-132 1.22e-16

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 75.22  E-value: 1.22e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148   55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE-------WAALPGGQAT 127
Cdd:PLN00171 120 PDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEpvwwrvgYAKLQGDTLD 199


                 ....*
gi 30694148  128 YLGNP 132
Cdd:PLN00171 200 YLGIP 204
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 51-132 3.45e-16

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 73.24  E-value: 3.45e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148   51 GEPrPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL-------GYGNWVKAQEWAALPG 123
Cdd:PLN00025  60 GET-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLakngvkfGEAVWFKAGAQIFSEG 138


                 ....*....
gi 30694148  124 GqATYLGNP 132
Cdd:PLN00025 139 G-LDYLGNP 146
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 48-132 3.42e-13

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 65.26  E-value: 3.42e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694148   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEvPANLERYKE------SELIHCRWAMLAVPGILVPEALGYGNWVKA------ 115
Cdd:PLN00048  45 WFASKQSLSYLDGTLPGDFGFDPLGLSD-PEGAGGFIEpqwlayGEVINGRFAMLGAAGAIAPEILGKAGLIPQetalpw 123

                         90
                 ....*....|....*...
gi 30694148  116 -QEWAALPGGQATYLGNP 132
Cdd:PLN00048 124 fQSGVIPPAGTYDYWADP 141
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
49-103 6.47e-09

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 51.92  E-value: 6.47e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 30694148    49 MPGEPRPAYLDGSAPGDFGFDPLGL-GEVPANLERYKESELIHCRWAMLAVPGILV 103
Cdd:pfam00504 101 GKAPGLGGGGDRGYPGGFGFDPLGLaKKDPETLAELKLKELKNGRLAMIAFLGFFV 156
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 34-105 4.76e-06

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 44.67  E-value: 4.76e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30694148   34 PNAGNVGRIRMAAHWMPGEPRPAYLDGSApgdfGFDPLGLGE-VPANLERYKESELIHCRWAMLAVPGILVPE 105
Cdd:PLN00089  29 PTAAAEDDCPGAIGFAAKEFMFIGKTGSK----KFDPLGLAEkVEEFLPWFRESELKHGRAAMLAVAGFIAPD 97
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 63-110 2.29e-04

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 40.05  E-value: 2.29e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 30694148   63 PGDFGFDPLGLG-EVPANLERYKESELIHCRWAMLAVPGILVPEAL-GYG 110
Cdd:PLN00089 156 PGDFGFDLLALYpKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAItGHG 205
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 63-113 1.35e-03

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 37.85  E-value: 1.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 30694148   63 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL-GYG---NWV 113
Cdd:PLN00187 215 PGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAAtGKGplnNWA 269
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 56-103 4.97e-03

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 36.01  E-value: 4.97e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 30694148   56 AYLDGSAPGDFG---FDPLGLGEVPANLERYKESELIHCRWAMLAVPGILV 103
Cdd:PLN00147 170 AALEGLEPGYPGgplFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFV 220
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 52-107 8.46e-03

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 35.55  E-value: 8.46e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 30694148   52 EPRPAYLDG--SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Cdd:PLN00171 240 EPLGIYLPGdiNYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAV 297
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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