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Conserved domains on  [gi|30694146|ref|NP_850705|]
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chlorophyll a-b binding protein 6 [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding domain-containing protein( domain architecture ID 859)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00089 super family cl02879
fucoxanthin-chlorophyll a/c binding protein; Provisional
 1-207 2.82e-142

fucoxanthin-chlorophyll a/c binding protein; Provisional


The actual alignment was detected with superfamily member PLN00099:

Pssm-ID: 470693  Cd Length: 243  Bit Score: 396.32  E-value: 2.82e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146    1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAgVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANL 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASS-VPLPNANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   81 ERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAF--------- 151
Cdd:PLN00099  80 ERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFvehqrsmek 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  152 -------------------------ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPF 206
Cdd:PLN00099 160 dpekkkypggafdplgyskdpkkfeEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPR 239


                 .
gi 30694146  207 N 207
Cdd:PLN00099 240 S 240
 
Name Accession Description Interval E-value
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 1-207 2.82e-142

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 396.32  E-value: 2.82e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146    1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAgVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANL 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASS-VPLPNANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   81 ERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAF--------- 151
Cdd:PLN00099  80 ERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFvehqrsmek 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  152 -------------------------ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPF 206
Cdd:PLN00099 160 dpekkkypggafdplgyskdpkkfeEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPR 239


                 .
gi 30694146  207 N 207
Cdd:PLN00099 240 S 240
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
55-174 5.32e-38

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 128.96  E-value: 5.32e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146    55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAAlPGGQATYLGNPVP 134
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFE-AGAVALHAQSVPT 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30694146   135 WGTLPTILAIEFLAIA-------------------------------------FELKVKEIKNGRLALLAFVGFCVQ 174
Cdd:pfam00504  81 LLALQILLLMGFLELArwqggkapglggggdrgypggfgfdplglakkdpetlAELKLKELKNGRLAMIAFLGFFVQ 157
 
Name Accession Description Interval E-value
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 1-207 2.82e-142

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 396.32  E-value: 2.82e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146    1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAgVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANL 80
Cdd:PLN00099   1 MASNTLMSCGIAAVFPSLLSSSKSKFASS-VPLPNANGSSRVTMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   81 ERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAF--------- 151
Cdd:PLN00099  80 ERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFvehqrsmek 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  152 -------------------------ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPF 206
Cdd:PLN00099 160 dpekkkypggafdplgyskdpkkfeEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPR 239


                 .
gi 30694146  207 N 207
Cdd:PLN00099 240 S 240
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 27-199 2.48e-42

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 142.71  E-value: 2.48e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   27 VSAGVPLPNAGNVG-RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPE 105
Cdd:PLN00100  16 VSAGVSTTRRPRVRvAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTD 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  106 ALGYGNWvkaqeWAAlpgGQATYLGNpvpwgtLPTILAIEFLAIAF-------------------------------ELK 154
Cdd:PLN00100  96 AVGLPKF-----WEA---GAEKYGLD------LQTLVLIQVVVMAVleaaryrgfmktgesgvlsffpfdptgmdspEMK 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 30694146  155 VKEIKNGRLALLAFVGFCvQQSAYPGTGPLENLATHLADPWHNNI 199
Cdd:PLN00100 162 VKEVKNGRLAMLAFLGMV-SQYAVTGKSPLEGLKAHMANPGHVNI 205
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 48-199 9.58e-40

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 136.16  E-value: 9.58e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GYGN---WVKA------ 115
Cdd:PLN00147  48 WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLrvtGIRNlpvWYEAgavkfe 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  116 --------------------QEW-------------------AALPGGQATYLGNPV--PWGTLPTILAieflaiAFELK 154
Cdd:PLN00147 128 fastrtlfvvqlllmgfaetKRYmdfvspgsqakegsffgleAALEGLEPGYPGGPLfnPLGLAKDIEN------AHDWK 201

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 30694146  155 VKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNI 199
Cdd:PLN00147 202 LKEIKNGRLAMVAMLGFFV-QASVTHTGPIDNLLTHLSDPWHKTI 245
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 48-199 3.42e-38

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 132.34  E-value: 3.42e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWaaLPGGQAT 127
Cdd:PLN00101  56 WLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQW--YDAGKAE 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  128 YLGNPvpwgtlPTILAIEFL-----------------------------------------------AIAFELKVKEIKN 160
Cdd:PLN00101 134 YFASS------STLFVIEFIlfhyveirrwqdiknpgsvnqdpifkqyslppnevgypggifnplnfAPTEEAKEKELAN 207

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 30694146  161 GRLALLAFVGFCVQQSAyPGTGPLENLATHLADPWHNNI 199
Cdd:PLN00101 208 GRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDPWHNTI 245
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
55-174 5.32e-38

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 128.96  E-value: 5.32e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146    55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAAlPGGQATYLGNPVP 134
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFE-AGAVALHAQSVPT 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30694146   135 WGTLPTILAIEFLAIA-------------------------------------FELKVKEIKNGRLALLAFVGFCVQ 174
Cdd:pfam00504  81 LLALQILLLMGFLELArwqggkapglggggdrgypggfgfdplglakkdpetlAELKLKELKNGRLAMIAFLGFFVQ 157
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 48-199 9.95e-38

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 131.57  E-value: 9.95e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---GY--------------- 109
Cdd:PLN00098  65 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLerlGFienfswydagareyf 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  110 -------------GNWVKAQEWAAL--PGGQATYL-----GNPVPWGTLPTILAIEFLAIA-------FELKVKEIKNGR 162
Cdd:PLN00098 145 adpttlfvvqmvlMGWAEGRRWADLikPGCVDIEPklpnkTNPKPDVGYPGGLWFDPMMWGrgspepvMVLRTKEIKNGR 224

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 30694146  163 LALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNI 199
Cdd:PLN00098 225 LAMLAFVGFCF-QAVYTGEGPIENLMAHLADPGHCNV 260
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 48-199 2.51e-37

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 129.74  E-value: 2.51e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL------GYGNWVKAQEWAA- 120
Cdd:PLN00097  47 WLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLtkigmaDLPNWIDAAKWDGy 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  121 -LPGGQATY----------------LGNP---------------------VPWGTLPTILAIEFLAIAFELKVKEIKNGR 162
Cdd:PLN00097 127 wAGAGPLFFiqmamfnwaeirrwqdMKAPgsmnedplfgankgdtntdvgYPKGLFDKFGWAKDEKKAAELKLKEIANGR 206

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 30694146  163 LALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNI 199
Cdd:PLN00097 207 LAMLAFLGCCA-QAIQTGTGPVDNLFSHLADPGHNGI 242
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 55-199 3.43e-33

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 121.06  E-value: 3.43e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE-------WAALPGGQAT 127
Cdd:PLN00171 120 PDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEpvwwrvgYAKLQGDTLD 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  128 YLGNP-----------------------------------------------VPWGTLPTILAIEFLAIAFE-LKVKEIK 159
Cdd:PLN00171 200 YLGIPglhiagsqgviviaicqallmvgpeyarycgiealeplgiylpgdinYPGGALFDPLGLSKDPVAFEdLKVKEIK 279

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 30694146  160 NGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNNI 199
Cdd:PLN00171 280 NGRLAMVAWLGFYI-QAAVTGKGPVQNLVDHLSDPLHNNL 318
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 48-201 9.52e-33

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 119.12  E-value: 9.52e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA-------------------------------------------NLERYK 84
Cdd:PLN00187  55 WFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEylqfdldsldqnlaknlagdvigtrteaseikstpfqpysevfGLQRFR 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   85 ESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGgqATYLGNPVPWgTLPTILAIEFLAIAF------------- 151
Cdd:PLN00187 135 ECELIHGRWAMLATLGALSVEALTGVTWQDAGKVELVDG--SSYLGQPLPF-SITTLIWIEVLVIGYiefqrnaeldpek 211

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30694146  152 ----------------------ELKVKEIKNGRLALLAFVGFCVQqSAYPGTGPLENLATHLADPWHNNIGD 201
Cdd:PLN00187 212 rlypggkffdplglaadpekkeTLQLAEIKHARLAMVAFLGFAVQ-AAATGKGPLNNWATHLSDPLHTTIID 282
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 51-198 1.48e-31

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 115.23  E-value: 1.48e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   51 GEPrPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL-------GYGNWVKAQEWAALPG 123
Cdd:PLN00025  60 GET-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLakngvkfGEAVWFKAGAQIFSEG 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  124 GqATYLGNP--VPWGTLPTILAIEFLAIAF-------------------------------------ELKVKEIKNGRLA 164
Cdd:PLN00025 139 G-LDYLGNPslVHAQSILAIWACQVVLMGAvegyrvnggplgegldplypggsfdplgladdpdtfaELKVKEIKNGRLA 217

                        170       180       190
                 ....*....|....*....|....*....|....
gi 30694146  165 LLAFVGFCVqQSAYPGTGPLENLATHLADPWHNN 198
Cdd:PLN00025 218 MFSMFGFFV-QAIVTGKGPLENLADHLADPVANN 250
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 48-199 1.79e-27

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 104.55  E-value: 1.79e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEvPANLERYKE------SELIHCRWAMLAVPGILVPEALGYGNWVKAQewAAL 121
Cdd:PLN00048  45 WFASKQSLSYLDGTLPGDFGFDPLGLSD-PEGAGGFIEpqwlayGEVINGRFAMLGAAGAIAPEILGKAGLIPQE--TAL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  122 PGGQATYL---GNPVPWGTLPTILAIEFLAIAF----------------------------------------------- 151
Cdd:PLN00048 122 PWFQSGVIppaGTYDYWADPYTLFVLEMALMGFaehrraqdyykpgsmgkqyflglekglggsgnpaypggpffnplgfg 201

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 30694146  152 -------ELKVKEIKNGRLALLAFVGfCVQQSAYPGTGPLENLATHLADPWHNNI 199
Cdd:PLN00048 202 kdeksmkELKLKEVKNGRLAMLAILG-YFIQALVTGVGPFQNLLDHLADPVNNNV 255
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 55-138 4.91e-18

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 79.59  E-value: 4.91e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAqewAALPGGQAtylgnPVP 134
Cdd:PLN00170  67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFS 138


                 ....
gi 30694146  135 WGTL 138
Cdd:PLN00170 139 FGSL 142
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
49-103 2.20e-08

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 51.54  E-value: 2.20e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 30694146    49 MPGEPRPAYLDGSAPGDFGFDPLGL-GEVPANLERYKESELIHCRWAMLAVPGILV 103
Cdd:pfam00504 101 GKAPGLGGGGDRGYPGGFGFDPLGLaKKDPETLAELKLKELKNGRLAMIAFLGFFV 156
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 34-182 4.42e-08

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 51.22  E-value: 4.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   34 PNAGNVGRIRMAAHWMPGEPRPAYLDGSApgdfGFDPLGLGE-VPANLERYKESELIHCRWAMLAVPGILVP-------E 105
Cdd:PLN00089  29 PTAAAEDDCPGAIGFAAKEFMFIGKTGSK----KFDPLGLAEkVEEFLPWFRESELKHGRAAMLAVAGFIAPdfvripgE 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146  106 ALGYGN----------------------WVKAQEWA-ALPGGQATYLGNPVP--WGTLPTILAIEFLAIAFELKVKEIKN 160
Cdd:PLN00089 105 AYSFAAipktidahdallksgamiqifaWIGFVDLAvSAPAAAAAAEFDRTPgdFGFDLLALYPKDAAKMEKKKDKELKN 184

                        170       180
                 ....*....|....*....|..
gi 30694146  161 GRLALLAfVGFCVQQSAYPGTG 182
Cdd:PLN00089 185 GRLAMVA-IGGIATGSAITGHG 205
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 68-151 8.48e-03

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 35.87  E-value: 8.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30694146   68 FDPLGL--GEVPANLERYKESELIHCRWAMLAVPGILVPEAlGY---GNW-VKAQEWAALPGGQATYLGNPVPwGTLPTI 141
Cdd:PLN00120  47 FDPLGLvdDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA-GIrlpGDIdYSGTSFSDIPNGFAALDAIPTA-GLLQIL 124

                         90
                 ....*....|
gi 30694146  142 LAIEFLAIAF 151
Cdd:PLN00120 125 AFIGFLELAV 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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