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Conserved domains on  [gi|30680251|ref|NP_849323|]
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zinc finger (C2H2 type) family protein [Arabidopsis thaliana]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 11472214)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11361095|22803940
SCOP:  4003583

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
SFP1 super family cl25788
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 196-274 1.63e-06

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


The actual alignment was detected with superfamily member COG5189:

Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 49.72  E-value: 1.63e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30680251 196 NGGGETPKYTPPAEkvlRTVKTPATVCGPSSDRPYACPYEGCEKAYIHEYKLKLHLKRehpGHLQEENADTPTLNKHNG 274
Cdd:COG5189 319 TNSSSNGKLAHGGE---RNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLH---GHQNQKLHENPSPEKMNI 391
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
92-170 8.18e-05

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 44.69  E-value: 8.18e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30680251  92 DVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKTHSQENYHIC 170
Cdd:COG5048 371 PPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLC 449
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 196-274 1.63e-06

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 49.72  E-value: 1.63e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30680251 196 NGGGETPKYTPPAEkvlRTVKTPATVCGPSSDRPYACPYEGCEKAYIHEYKLKLHLKRehpGHLQEENADTPTLNKHNG 274
Cdd:COG5189 319 TNSSSNGKLAHGGE---RNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLH---GHQNQKLHENPSPEKMNI 391
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
92-170 8.18e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 44.69  E-value: 8.18e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30680251  92 DVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKTHSQENYHIC 170
Cdd:COG5048 371 PPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLC 449
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 196-274 1.63e-06

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 49.72  E-value: 1.63e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30680251 196 NGGGETPKYTPPAEkvlRTVKTPATVCGPSSDRPYACPYEGCEKAYIHEYKLKLHLKRehpGHLQEENADTPTLNKHNG 274
Cdd:COG5189 319 TNSSSNGKLAHGGE---RNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLH---GHQNQKLHENPSPEKMNI 391
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
92-170 8.18e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 44.69  E-value: 8.18e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30680251  92 DVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKTHSQENYHIC 170
Cdd:COG5048 371 PPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLC 449
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
86-188 1.42e-04

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 43.92  E-value: 1.42e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30680251  86 CGKTFFDVSALRKH-----SHIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFN-----L 155
Cdd:COG5048 295 CNISFSRSSPLTRHlrsvnHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNneppqS 374

                        90       100       110
                ....*....|....*....|....*....|...
gi 30680251 156 RSHMKTHSQENYHICPYSGCVKRYAHEYKLKNH 188
Cdd:COG5048 375 LQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLH 407
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
79-188 9.10e-04

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 41.22  E-value: 9.10e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30680251  79 FLCSYDGCGKTFFDVSALRKHSHIH-GERQYVCDQEGCGKKFLDSSKLKRH-----YLIHTGERNYICTYEGCGKAFSLD 152
Cdd:COG5048 322 FSCPYSLCGKLFSRNDALKRHILLHtSISPAKEKLLNSSSKFSPLLNNEPPqslqqYKDLKNDKKSETLSNSCIRNFKRD 401

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 30680251 153 FNLRSHMKTHSQENYHICPYSGCVKRYAHEYKLKNH 188
Cdd:COG5048 402 SNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPH 437
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 170-255 2.27e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 39.70  E-value: 2.27e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30680251 170 CPYSGCVKRYAHEYKLKnhvaaYHEKNGGGETPKYTPPAEKVLRTVktpatvcgPSSDRPYACPYegCEKAYIHEYKLKL 249
Cdd:COG5189 352 CPVEGCNKKYKNQNGLK-----YHMLHGHQNQKLHENPSPEKMNIF--------SAKDKPYRCEV--CDKRYKNLNGLKY 416


                ....*.
gi 30680251 250 HLKREH 255
Cdd:COG5189 417 HRKHSH 422
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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