|
Name |
Accession |
Description |
Interval |
E-value |
| NES2-NLS_MLXIP |
cd21772 |
nuclear export signal 2 (NES2) and nuclear import signal (NLS) domains found in ... |
121-237 |
8.27e-93 |
|
nuclear export signal 2 (NES2) and nuclear import signal (NLS) domains found in MLX-interacting protein (MLXIP), and similar proteins; MLXIP, also called class E basic helix-loop-helix protein 36 (bHLHe36), transcriptional activator MondoA, or MIR, is a novel basic helix-loop-helix-leucine zipper transcriptional activator that constitutes a positive branch of a max-like network. It binds DNA by forming a heterodimer with Max-like protein (MLX) and activates transcription. It binds to the canonical E box sequence 5'-CACGTG-3'. MLXIP plays a role in transcriptional activation of glycolytic target genes and is involved in glucose-responsive gene regulation. MLXIP may contain functional domains, including two nuclear export signals, NES1 and NES2, and a nuclear import signal (NLS) in the N-terminal region. This model corresponds to NES2 and NLS domains.
Pssm-ID: 439288 Cd Length: 117 Bit Score: 281.18 E-value: 8.27e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 121 SIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVDVDEHRR 200
Cdd:cd21772 1 SIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVDVDEHRR 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 46849805 201 PEAITTEGKYWKSRIEIVIREYHKWRTYFKKRLQQHK 237
Cdd:cd21772 81 PEAIATEGKYWKRRIEIVIREYHKWRTYFKKRLQKHK 117
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
344-570 |
2.00e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.64 E-value: 2.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 344 GSMLPPPSSLPAAdpsSPPSQGNILPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTSQTVDPFIQPADFGPSEPPLS 423
Cdd:PHA03247 2729 RQASPALPAAPAP---PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 424 VPqpflpvftmTLLSPGPAPAPVPTALPLVPSPAPT----LNPPTPPAFLQPQKFAG--VSKSTPVithtASATLTHDAS 497
Cdd:PHA03247 2806 DP---------PAAVLAPAAALPPAASPAGPLPPPTsaqpTAPPPPPGPPPPSLPLGgsVAPGGDV----RRRPPSRSPA 2872
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 46849805 498 ATTFSQNQGLVITAHHPTPSSSPCALALSPVPQPPavgPPQPhltfiHPKPVSLTGVRHKQPPKIVPAPKPEP 570
Cdd:PHA03247 2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPER---PPQP-----QAPPPPQPQPQPPPPPQPQPPPPPPP 2937
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
338-572 |
2.59e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.14 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 338 SSRSIFGSMLPPPSSLPA---ADPSSPPSQGNILPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTSQTVDPfiQPAD 414
Cdd:pfam05109 450 SSTHVPTNLTAPASTGPTvstADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSP--TPAV 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 415 FGPS----EPPLSVPQPFLPVFTMTLLSPGPAPA---PVPTA-LPLVPSPAPTLNPPTPPAFLQPQKFAGVSKSTPVITH 486
Cdd:pfam05109 528 TTPTpnatSPTLGKTSPTSAVTTPTPNATSPTPAvttPTPNAtIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNH 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 487 TASATLTHDASATTFSQNQGLVITAHHPTPSSSPCALALSPVPQPPAVGPP--------QPHLTFIHP------KPVSLT 552
Cdd:pfam05109 608 TLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPStsdnstshMPLLTSAHPtggeniTQVTPA 687
|
250 260
....*....|....*....|
gi 46849805 553 GVRHKQPPKIVPAPKPEPVS 572
Cdd:pfam05109 688 STSTHHVSTSSPAPRPGTTS 707
|
|
| KREPA2 |
cd23959 |
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ... |
349-542 |
3.11e-03 |
|
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.
Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 40.24 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 349 PPSSLPAADPSSPPSQGNILPNTALPPASLPNSLITS---SAAPSLDPTEGQGCERTSQTVDPFIQPADFGPSEP-PLSV 424
Cdd:cd23959 56 PLYGAVSPEGENPFDGPGLVTASTVSDCYVGNANFYEvdmSDAFAMAPDESLGPFRAARVPNPFSASSSTQRETHkTAQV 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 425 PQPFlpvftmtllsPGPAPAPVPTA--LPLVPSPAPTLNPPTPPAFLQPQKFAGVSKSTPVITHTASATLTHDASATTFS 502
Cdd:cd23959 136 APPK----------AEPQTAPVTPFgqLPMFGQHPPPAKPLPAAAAAQQSSASPGEVASPFASGTVSASPFATATDTAPS 205
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 46849805 503 QNQGLVITAHHPTPSSSPCALALSPVPQPPAVGPPQPHLT 542
Cdd:cd23959 206 SGAPDGFPAEASAPSPFAAPASAASFPAAPVANGEAATPT 245
|
|
| half-pint |
TIGR01645 |
poly-U binding splicing factor, half-pint family; The proteins represented by this model ... |
344-492 |
8.15e-03 |
|
poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Pssm-ID: 130706 [Multi-domain] Cd Length: 612 Bit Score: 39.28 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 344 GSMLPPPSSLpaADPSSPpsqgnilpnTALPPASLPNSLITSSAAPSLDPTEGQ---GCERTSQTVDPFIQPADFGPS-- 418
Cdd:TIGR01645 279 GKCVTPPDAL--LQPATV---------SAIPAAAAVAAAAATAKIMAAEAVAGAavlGPRAQSPATPSSSLPTDIGNKav 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 419 -EPPLSVPQPF--LPVFTMTLLSPGPAPAPVPTALPLVPSPApTLNPP-------TPPAFLQPQKFAGVSKSTPVITHTA 488
Cdd:TIGR01645 348 vSSAKKEAEEVppLPQAAPAVVKPGPMEIPTPVPPPGLAIPS-LVAPPglvapteINPSFLASPRKKMKREKLPVTFGAL 426
|
....
gi 46849805 489 SATL 492
Cdd:TIGR01645 427 DDTL 430
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NES2-NLS_MLXIP |
cd21772 |
nuclear export signal 2 (NES2) and nuclear import signal (NLS) domains found in ... |
121-237 |
8.27e-93 |
|
nuclear export signal 2 (NES2) and nuclear import signal (NLS) domains found in MLX-interacting protein (MLXIP), and similar proteins; MLXIP, also called class E basic helix-loop-helix protein 36 (bHLHe36), transcriptional activator MondoA, or MIR, is a novel basic helix-loop-helix-leucine zipper transcriptional activator that constitutes a positive branch of a max-like network. It binds DNA by forming a heterodimer with Max-like protein (MLX) and activates transcription. It binds to the canonical E box sequence 5'-CACGTG-3'. MLXIP plays a role in transcriptional activation of glycolytic target genes and is involved in glucose-responsive gene regulation. MLXIP may contain functional domains, including two nuclear export signals, NES1 and NES2, and a nuclear import signal (NLS) in the N-terminal region. This model corresponds to NES2 and NLS domains.
Pssm-ID: 439288 Cd Length: 117 Bit Score: 281.18 E-value: 8.27e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 121 SIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVDVDEHRR 200
Cdd:cd21772 1 SIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVDVDEHRR 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 46849805 201 PEAITTEGKYWKSRIEIVIREYHKWRTYFKKRLQQHK 237
Cdd:cd21772 81 PEAIATEGKYWKRRIEIVIREYHKWRTYFKKRLQKHK 117
|
|
| NES2-NLS_ChREBP |
cd21771 |
nuclear export signal 2 (NES2) and nuclear import signal (NLS) domains found in ... |
121-237 |
3.57e-75 |
|
nuclear export signal 2 (NES2) and nuclear import signal (NLS) domains found in carbohydrate-responsive element-binding protein (ChREBP), and similar proteins; ChREBP, also called class D basic helix-loop-helix protein 14 (bHLHd14), Max-like protein (MLX) interactor or MIO, MLX-interacting protein-like (MLXIPL), WS basic-helix-loop-helix leucine zipper protein (WS-bHLH), or Williams-Beuren syndrome chromosomal region 14 protein (WBSCR14), is a large transcription factor that functions at two levels, nuclear localization and DNA binding. It binds to the canonical and non-canonical E box sequences 5'-CACGTG-3'. It also binds DNA as a heterodimer with TCFL4/MLX. ChREBP contains functional domains, including two nuclear export signals, NES1 and NES2, and a nuclear import signal (NLS) in the N-terminal region. This model corresponds to NES2 and NLS domains.
Pssm-ID: 439287 Cd Length: 116 Bit Score: 235.25 E-value: 3.57e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 121 SIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSvDVDEHRR 200
Cdd:cd21771 1 SIDPTLTRLFECMSLAYSGKLVSPKWKNFKGLRLLWRDKIRLNNAIWRAWYIQYVEKRKNPVCGFVTPLEGS-EADEHRK 79
|
90 100 110
....*....|....*....|....*....|....*..
gi 46849805 201 PEAITTEGKYWKSRIEIVIREYHKWRTYFKKRLQQHK 237
Cdd:cd21771 80 PEAVVLEGNYWKRRIEVVMKEYHKWRIYYKKRLRKSS 116
|
|
| NES2-NLS_ChREBP-like |
cd21739 |
nuclear export signal 2 (NES2) and nuclear import signal (NLS) domains found in ... |
121-233 |
4.03e-69 |
|
nuclear export signal 2 (NES2) and nuclear import signal (NLS) domains found in carbohydrate-responsive element-binding protein (ChREBP), MLX-interacting protein (MLXIP), and similar proteins; This family includes two transcription factors: ChREBP and MLXIP. ChREBP, also called class D basic helix-loop-helix protein 14 (bHLHd14), Max-like protein (MLX) interactor or MIO, MLX-interacting protein-like (MLXIPL), WS basic-helix-loop-helix leucine zipper protein (WS-bHLH), or Williams-Beuren syndrome chromosomal region 14 protein (WBSCR14), functions at two levels; nuclear localization and DNA binding. ChREBP binds to the canonical and non-canonical E box sequences 5'-CACGTG-3'. It also binds DNA as a heterodimer with TCFL4/MLX. MLXIP, also called class E basic helix-loop-helix protein 36 (bHLHe36), transcriptional activator MondoA, or MIR, is a novel basic helix-loop-helix-leucine zipper transcriptional activator that constitutes a positive branch of a max-like network. MLXIP binds DNA by forming a heterodimer with Max-like protein (MLX), and activates transcription. It binds to the canonical E box sequence 5'-CACGTG-3'. MLXIP plays a role in transcriptional activation of glycolytic target genes and is involved in glucose-responsive gene regulation. Members in this family may contain functional domains, including two nuclear export signals, NES1 and NES2, and a nuclear import signal (NLS) in the N-terminal region. This model corresponds to NES2 and NLS domains.
Pssm-ID: 439286 Cd Length: 113 Bit Score: 219.44 E-value: 4.03e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 121 SIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLdgsvDVDEHRR 200
Cdd:cd21739 1 AIDESLTKLFKCLTLAYSGKLTSPKWKNFKGLKLRWKDKIRLNNAIWREWHMQFVKKKKPPVCQFAVPL----DDDTHKK 76
|
90 100 110
....*....|....*....|....*....|...
gi 46849805 201 PEAITTEGKYWKSRIEIVIREYHKWRTYFKKRL 233
Cdd:cd21739 77 PEAVVLEGKYWKRRLETVVREYKKWRLFYKDKL 109
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
344-570 |
2.00e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 57.64 E-value: 2.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 344 GSMLPPPSSLPAAdpsSPPSQGNILPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTSQTVDPFIQPADFGPSEPPLS 423
Cdd:PHA03247 2729 RQASPALPAAPAP---PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA 2805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 424 VPqpflpvftmTLLSPGPAPAPVPTALPLVPSPAPT----LNPPTPPAFLQPQKFAG--VSKSTPVithtASATLTHDAS 497
Cdd:PHA03247 2806 DP---------PAAVLAPAAALPPAASPAGPLPPPTsaqpTAPPPPPGPPPPSLPLGgsVAPGGDV----RRRPPSRSPA 2872
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 46849805 498 ATTFSQNQGLVITAHHPTPSSSPCALALSPVPQPPavgPPQPhltfiHPKPVSLTGVRHKQPPKIVPAPKPEP 570
Cdd:PHA03247 2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPER---PPQP-----QAPPPPQPQPQPPPPPQPQPPPPPPP 2937
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
348-572 |
9.50e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 9.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 348 PPPSSLPAADPSSPPSqgnilPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTSQTVDPFIQPADFGPSEPPLSVPQP 427
Cdd:PHA03247 2612 APPSPLPPDTHAPDPP-----PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRR 2686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 428 FLPVFTMTLLSPGPAPAPVPTalplvPSPAPTLNPPTPPAFLQPQKFAGVSKSTPVITHTASATLTHDASATtfsqnqgl 507
Cdd:PHA03247 2687 AARPTVGSLTSLADPPPPPPT-----PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGG-------- 2753
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 46849805 508 vitahhPTPSSSPCALALSPVPQPPA--VGPPQPHLTfiHPKPVSLTGVRHKQPPKIVPAPKPEPVS 572
Cdd:PHA03247 2754 ------PARPARPPTTAGPPAPAPPAapAAGPPRRLT--RPAVASLSESRESLPSPWDPADPPAAVL 2812
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
348-538 |
3.10e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.79 E-value: 3.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 348 PPPSSLPAADPSSP-------PSQGNILPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTSQTVDPFIQPADFGPSEP 420
Cdd:PHA03247 2830 PPTSAQPTAPPPPPgppppslPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPP 2909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 421 PLSVPQPFLPVFTMTlLSPGPAPAPVPTALP---LVPSPAPTLNPPTPPAFLQPQKFAGVSKSTPVI-THTASATLTHDA 496
Cdd:PHA03247 2910 QPQAPPPPQPQPQPP-PPPQPQPPPPPPPRPqppLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPrFRVPQPAPSREA 2988
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 46849805 497 SATTFSQNQglvitaHHPTP--SSSPCALALSPVPQPPAVGPPQ 538
Cdd:PHA03247 2989 PASSTPPLT------GHSLSrvSSWASSLALHEETDPPPVSLKQ 3026
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
339-573 |
8.91e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 52.25 E-value: 8.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 339 SRSIFGSMLPPPSSLPAADPSSPPSQGNILPNTALPPASLPNSLI---TSS--AAPSLDPTEGQGCERTSQTVDPFIQPA 413
Cdd:PHA03247 2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLpppTSAqpTAPPPPPGPPPPSLPLGGSVAPGGDVR 2863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 414 DFGPSEPPLSVP--QPFLPVFTMtllsPGPAPAPVPTALPLVPSPAPTLNPPTPPAFLQPQKFAGVSKSTpvithtasat 491
Cdd:PHA03247 2864 RRPPSRSPAAKPaaPARPPVRRL----ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQP---------- 2929
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 492 lthdasattfsqnqglviTAHHPTPSSSPCALALSPVPQP---PAVGPPQPHLTFIHPKPVSLTGVRHKQPPKIVPAPKP 568
Cdd:PHA03247 2930 ------------------QPPPPPPPRPQPPLAPTTDPAGagePSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPAS 2991
|
....*
gi 46849805 569 EPVSL 573
Cdd:PHA03247 2992 STPPL 2996
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
349-578 |
5.01e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.94 E-value: 5.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 349 PPSSLPAADPSSPPsqgnilPNTALPPASLPNSLITSSAAPSLDPTegqgcertsqtvDPFIQPADFGPSEPPLSVPQPF 428
Cdd:PHA03247 2766 PPAPAPPAAPAAGP------PRRLTRPAVASLSESRESLPSPWDPA------------DPPAAVLAPAAALPPAASPAGP 2827
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 429 LPVFTMTL-LSPGPAPAPVPTALPLVPSPAP---------TLNPPTPPAFLQPQKFAGVSKStPVITHTASATLTHDASA 498
Cdd:PHA03247 2828 LPPPTSAQpTAPPPPPGPPPPSLPLGGSVAPggdvrrrppSRSPAAKPAAPARPPVRRLARP-AVSRSTESFALPPDQPE 2906
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 499 ttfSQNQGLVITAHHPTPSSSPCALALSPVPQPPAVGPPQPHLTFIHPKPVSLTGVRHKQPPKIVPAPKPEPVSLVLKNA 578
Cdd:PHA03247 2907 ---RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPA 2983
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
349-554 |
5.11e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.86 E-value: 5.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 349 PPSSLPAADPSSPPSQGNILPNTALPPASLPNSLITSSAAPSLDPTEG-QGCERTSQTVDPFIQPAdfgPSEPPLSVPQP 427
Cdd:PHA03247 2881 PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQpQPPPPPPPRPQPPLAPT---TDPAGAGEPSG 2957
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 428 FLPVFTMTLLSPGPAPAP---VPTALPLVPSPAPTLNPPTPPAFLQPQKFAGV------SKSTPV----ITHTASATLTH 494
Cdd:PHA03247 2958 AVPQPWLGALVPGRVAVPrfrVPQPAPSREAPASSTPPLTGHSLSRVSSWASSlalheeTDPPPVslkqTLWPPDDTEDS 3037
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 46849805 495 DASATTFSQNQGLVITAHHPTPSSSPCALALSPVPQPPAVGPPQ-PHLTFiHPKPVSLTGV 554
Cdd:PHA03247 3038 DADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGAREsPSSQF-GPPPLSANAA 3097
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
349-568 |
5.61e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.47 E-value: 5.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 349 PPSSLPAADPSSPPSQGNilpntalPPASLPNSliTSSAAPSLDPTEGQGCERTSQTVDPFIQPADFGPSEP--PLSVPQ 426
Cdd:PHA03247 2689 RPTVGSLTSLADPPPPPP-------TPEPAPHA--LVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPggPARPAR 2759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 427 PFLPVftmtlLSPGPAPAPVPTALPLVPSPAPTLNPPTPPAFLQPQKFAGVSKSTPVITHTASATLTHDASATTfsqnqg 506
Cdd:PHA03247 2760 PPTTA-----GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL------ 2828
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 46849805 507 lvitahhPTPSSSpcalalSPVPQPPAVGPPQPHLTFihPKPVSLTGVRHKQPPKIVPAPKP 568
Cdd:PHA03247 2829 -------PPPTSA------QPTAPPPPPGPPPPSLPL--GGSVAPGGDVRRRPPSRSPAAKP 2875
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
347-583 |
1.19e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.31 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 347 LPPPSSLPAADPSSPPSQgnilpntalpPASLPNSLITSSAAPSLDPTEGQGCERTSqtVDPFIQPADFGPSEPPLSVPQ 426
Cdd:PHA03247 2555 LPPAAPPAAPDRSVPPPR----------PAPRPSEPAVTSRARRPDAPPQSARPRAP--VDDRGDPRGPAPPSPLPPDTH 2622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 427 PFLPvftmtllsPGPAPAPVPTALPlVPSPAPTLNPPtppaflQPQKFAGVSKSTPVITHTASATLTHDASATTFSQNQG 506
Cdd:PHA03247 2623 APDP--------PPPSPSPAANEPD-PHPPPTVPPPE------RPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRA 2687
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 46849805 507 LvitahhPTPSSSPCALALSPVPQPPAVGPPQPHLTFIHPKPVSLTGVRHKQPPKIVPAPKPEPVSLVLKNACIAPG 583
Cdd:PHA03247 2688 A------RPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPA 2758
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
348-570 |
1.49e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 45.06 E-value: 1.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 348 PPPSSLPAADPSSPPSQGNIlPNTALPPASLPNSLITSSAAP-SLDPTEGQGCERTSQTVDPFIQPADFG------PSEP 420
Cdd:PHA03378 576 PLTSPTTSQLASSAPSYAQT-PWPVPHPSQTPEPPTTQSHIPeTSAPRQWPMPLRPIPMRPLRMQPITFNvlvfptPHQP 654
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 421 PLSVPQPFLPVFTMTLLSP-GPAPAPVPTALPLVPSPAPTLNPPTPPAFLQP--------QKFAGVSKSTPVITHTASAT 491
Cdd:PHA03378 655 PQVEITPYKPTWTQIGHIPyQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPpaappgraQRPAAATGRARPPAAAPGRA 734
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 492 LTHDASATTFSQNQGLVITAHHP----TPSSSPCALALSPVPQPPAVGPPQPhltfihpkpvsltgvrhKQPPKIVPAPK 567
Cdd:PHA03378 735 RPPAAAPGRARPPAAAPGRARPPaaapGRARPPAAAPGAPTPQPPPQAPPAP-----------------QQRPRGAPTPQ 797
|
...
gi 46849805 568 PEP 570
Cdd:PHA03378 798 PPP 800
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
263-568 |
1.51e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 45.06 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 263 PVPMEEDSLLDTDMLMSEFSDTLFSTlsSHQPvawpnPREIAHLGNADMIQPGLIPLQPNLDFMDTFEPFQdlfsssrSI 342
Cdd:PHA03378 625 PMPLRPIPMRPLRMQPITFNVLVFPT--PHQP-----PQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQ-------WA 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 343 FGSMLPPPSSL-PAADPSSPPSQGN---ILPNTALPPASLPNSLITSSAAPS-LDPTEGQGCERTSQTVDPFIQPADFGP 417
Cdd:PHA03378 691 PGTMQPPPRAPtPMRPPAAPPGRAQrpaAATGRARPPAAAPGRARPPAAAPGrARPPAAAPGRARPPAAAPGRARPPAAA 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 418 SEPPLSVPQPFLPVFTMTLLSPGPAPAPVPTALP---LVPSPAPTLNPPTPPAFLQPQKFAGVSKSTPVI------THTA 488
Cdd:PHA03378 771 PGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPtsmQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLkkpaalERQA 850
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 489 SATLTHD-ASATTFSQNQGLVITAHHPTPSS------SPCALALSPVPQPPA-------VGPPQPHLTFIHPKPVSLTGV 554
Cdd:PHA03378 851 AAGPTPSpGSGTSDKIVQAPVFYPPVLQPIQvmrqlgSVRAAAASTVTQAPTeytgerrGVGPMHPTDIPPSKRAKTDAY 930
|
330
....*....|....
gi 46849805 555 RHKQPPKIVPAPKP 568
Cdd:PHA03378 931 VESQPPHGGQSHSF 944
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
402-570 |
1.65e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.87 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 402 TSQTVDPFIQPADFGPSEPPLSvPQPFLPvFTMTLLS---------------PGPAPAPVPTALP-----LVPSPAPTLN 461
Cdd:PRK12323 325 DAQEVQLFYQIANLGRSELALA-PDEYAG-FTMTLLRmlafrpgqsgggagpATAAAAPVAQPAPaaaapAAAAPAPAAP 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 462 PPTPPAFLQPQKFAGVSKSTPVITHTASATLthdASATTFSQNQGLVITAHHPTPSSSPCALALSPVPQP-----PAVGP 536
Cdd:PRK12323 403 PAAPAAAPAAAAAARAVAAAPARRSPAPEAL---AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPrpvaaAAAAA 479
|
170 180 190
....*....|....*....|....*....|....
gi 46849805 537 PQPHLTFIHPKPVSLTGVRHKQPPKIVPAPKPEP 570
Cdd:PRK12323 480 PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQ 513
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
348-539 |
2.16e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.39 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 348 PPPSSLPAADPSSPPsqgNILPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTSQTVDPFIQPADfgPSEPPLSVPQP 427
Cdd:PHA03307 117 PPPTPPPASPPPSPA---PDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPE--ETARAPSSPPA 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 428 FLPVFTMTLLSPGPAPAPVPTALPLVPSPAPTlnPPTPPAFLQPQKFAGVSKSTPVITHTASATLTHDASATTFSQnQGL 507
Cdd:PHA03307 192 EPPPSTPPAAASPRPPRRSSPISASASSPAPA--PGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITL-PTR 268
|
170 180 190
....*....|....*....|....*....|..
gi 46849805 508 VITAHHPTPSSSPCALALSPVPQPPAVGPPQP 539
Cdd:PHA03307 269 IWEASGWNGPSSRPGPASSSSSPRERSPSPSP 300
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
338-572 |
2.59e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.14 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 338 SSRSIFGSMLPPPSSLPA---ADPSSPPSQGNILPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTSQTVDPfiQPAD 414
Cdd:pfam05109 450 SSTHVPTNLTAPASTGPTvstADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSP--TPAV 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 415 FGPS----EPPLSVPQPFLPVFTMTLLSPGPAPA---PVPTA-LPLVPSPAPTLNPPTPPAFLQPQKFAGVSKSTPVITH 486
Cdd:pfam05109 528 TTPTpnatSPTLGKTSPTSAVTTPTPNATSPTPAvttPTPNAtIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNH 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 487 TASATLTHDASATTFSQNQGLVITAHHPTPSSSPCALALSPVPQPPAVGPP--------QPHLTFIHP------KPVSLT 552
Cdd:pfam05109 608 TLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPStsdnstshMPLLTSAHPtggeniTQVTPA 687
|
250 260
....*....|....*....|
gi 46849805 553 GVRHKQPPKIVPAPKPEPVS 572
Cdd:pfam05109 688 STSTHHVSTSSPAPRPGTTS 707
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
369-573 |
4.54e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 43.60 E-value: 4.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 369 PNTALPPASLPNSLITSSAAPSLDPTegqgcertSQTVDPFIQPADFGPSEPPLSVPQPFLPVFTMTLLSPGPAPAPVPT 448
Cdd:pfam03154 177 QSGAASPPSPPPPGTTQAATAGPTPS--------APSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQRLPSPHPP 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 449 ALPLVPSPAPTLNPPTPpafLQPQKFAGVSKSTPVITHTASATLTHDASATTFSqnqglvitahhPTPSSSPCALALSPV 528
Cdd:pfam03154 249 LQPMTQPPPPSQVSPQP---LPQPSLHGQMPPMPHSLQTGPSHMQHPVPPQPFP-----------LTPQSSQSQVPPGPS 314
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 46849805 529 PQPPAVGPPQPHLtfihpkPVSLTGVRHKQPPKIVPAPkPEPVSL 573
Cdd:pfam03154 315 PAAPGQSQQRIHT------PPSQSQLQSQQPPREQPLP-PAPLSM 352
|
|
| TALPID3 |
pfam15324 |
Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for ... |
416-582 |
7.29e-04 |
|
Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for Hedgehog signalling. Mutations in this gene noticed first in chickens lead to multiple abnormalities of development.
Pssm-ID: 434634 [Multi-domain] Cd Length: 1288 Bit Score: 42.95 E-value: 7.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 416 GPSEPPLSVPQPFLPVFTmtllspgPAPAPVPTALPLVP-SPAPTLNPPTP-----------PAFLQPQKFAGVSKS--- 480
Cdd:pfam15324 965 REPPVAASVPGDLPTKET-------LLPTPVPTPQPTPPcSPPSPLKEPSPvktpdsspcvsEHDFFPVKEIPPEKGadt 1037
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 481 ----TPVITHTASATLTHDASATtfsqnqglvitahhPTPSSSPCALALSPVPQPPAVGP------------PQPHLTFI 544
Cdd:pfam15324 1038 gpavSLVITPTVTPIATPPPAAT--------------PTPPLSENSIDKLKSPSPELPKPwedsdlpleeenPNSEQEEL 1103
|
170 180 190
....*....|....*....|....*....|....*....
gi 46849805 545 HPKPVSLTGVRHKQPPKIV-PAPKPEPVSLVLKNACIAP 582
Cdd:pfam15324 1104 HPRAVVMSVARDEEPESVVlPASPPEPKPLAPPPLGAAP 1142
|
|
| PHA01929 |
PHA01929 |
putative scaffolding protein |
369-476 |
1.18e-03 |
|
putative scaffolding protein
Pssm-ID: 177328 Cd Length: 306 Bit Score: 41.19 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 369 PNTALPPASLPNslITSSAAPSLDPTEGQGCERTSQTVDPFIQPADFGPSEPPLSVPQPfLPVFTMTLLSPGPAPA-PVP 447
Cdd:PHA01929 3 QNEQQLPPGLAG--LVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQP-VPTSAMTPHVVQQAPAqPAP 79
|
90 100 110
....*....|....*....|....*....|
gi 46849805 448 TALPL-VPSPAPTLNPPTPPAFLQPQKFAG 476
Cdd:PHA01929 80 AAPPAaGAALPEALEVPPPPAFTPNGEIVG 109
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
348-569 |
1.60e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 41.76 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 348 PPPSSLPAADPSSPPSQGNILPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTS---QTVDPFIQPADfGPSEPPLSV 424
Cdd:PRK07003 375 RVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPappATADRGDDAAD-GDAPVPAKA 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 425 PQPFLPVFTMTLLSPGPAPAPVPTALPLVPSPAPTLNPPTPPAFLQPQKFAGVSK----------------STPVITHTA 488
Cdd:PRK07003 454 NARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPdarapaaasredapaaAAPPAPEAR 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 489 SATLTHD---------ASATTFSQNQGLVITAHHptpSSSPCALALSPVPQPPAVGPPQPHLTFIHPKPVSLTGVRHKQP 559
Cdd:PRK07003 534 PPTPAAAapaaraggaAAALDVLRNAGMRVSSDR---GARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPP 610
|
250
....*....|
gi 46849805 560 PKIVPAPKPE 569
Cdd:PRK07003 611 NGAARAEQAA 620
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
452-586 |
2.33e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 40.95 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 452 LVPSPAPTLNPPTPPAflqpqkfagvskSTPVITHTASATLTHDASATTFSQNQGLVITAHHPTPSSSPCAlalSPVPQP 531
Cdd:PRK14950 360 LVPVPAPQPAKPTAAA------------PSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA---PPVPHT 424
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 46849805 532 PAVGPPQphltfihPKPVSLTGVRHKQPPkivPAPKPEPVSlvlknACIAPGELV 586
Cdd:PRK14950 425 PESAPKL-------TRAAIPVDEKPKYTP---PAPPKEEEK-----ALIADGDVL 464
|
|
| KREPA2 |
cd23959 |
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ... |
349-542 |
3.11e-03 |
|
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.
Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 40.24 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 349 PPSSLPAADPSSPPSQGNILPNTALPPASLPNSLITS---SAAPSLDPTEGQGCERTSQTVDPFIQPADFGPSEP-PLSV 424
Cdd:cd23959 56 PLYGAVSPEGENPFDGPGLVTASTVSDCYVGNANFYEvdmSDAFAMAPDESLGPFRAARVPNPFSASSSTQRETHkTAQV 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 425 PQPFlpvftmtllsPGPAPAPVPTA--LPLVPSPAPTLNPPTPPAFLQPQKFAGVSKSTPVITHTASATLTHDASATTFS 502
Cdd:cd23959 136 APPK----------AEPQTAPVTPFgqLPMFGQHPPPAKPLPAAAAAQQSSASPGEVASPFASGTVSASPFATATDTAPS 205
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 46849805 503 QNQGLVITAHHPTPSSSPCALALSPVPQPPAVGPPQPHLT 542
Cdd:cd23959 206 SGAPDGFPAEASAPSPFAAPASAASFPAAPVANGEAATPT 245
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
435-539 |
4.33e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 40.18 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 435 TLLSPGPAPAPVPTALPL----VPSPAPTLNPPTPPAFLQPQKFAGVSKSTPvithtasATLTHDASATTFSqnqglvit 510
Cdd:PRK14950 358 ALLVPVPAPQPAKPTAAApspvRPTPAPSTRPKAAAAANIPPKEPVRETATP-------PPVPPRPVAPPVP-------- 422
|
90 100
....*....|....*....|....*....
gi 46849805 511 ahHPTPSSSPCALALSPVPQPPAVGPPQP 539
Cdd:PRK14950 423 --HTPESAPKLTRAAIPVDEKPKYTPPAP 449
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
349-548 |
4.75e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 40.15 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 349 PPSSLPAADPSSPPSQGNILPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTSQTVDPFIQPADFGPSEPPLSVPQPF 428
Cdd:PHA03307 19 EFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 429 LPVFTMTLLSPGPAPAPVPTALPLVPSPAPTLNPPTPPAFLQPQKFAGVSKSTPVITHTASATlthDASATTFSQNQGLV 508
Cdd:PHA03307 99 SPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAA---VASDAASSRQAALP 175
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 46849805 509 IT---AHHPTPSSSPCALALSPVPQPPAVGPPQPHLTFIHPKP 548
Cdd:PHA03307 176 LSspeETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASAS 218
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
349-572 |
5.28e-03 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 39.91 E-value: 5.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 349 PPSSLPAADPSSP----PSQGN------ILPNTA---LPPASLPNSLITSSAAPSLDPTEGqgcerTSQTVDPFIQPAdf 415
Cdd:PLN03209 343 PTKPVTPEAPSPPieeePPQPKavvprpLSPYTAyedLKPPTSPIPTPPSSSPASSKSVDA-----VAKPAEPDVVPS-- 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 416 gpSEPPLSVPQPflpvftmtllspGPAPAPVPTALPLVPSPA-PTLNPPTPPAFLQPQKFAGVSKSTPVIT---HTASAT 491
Cdd:PLN03209 416 --PGSASNVPEV------------EPAQVEAKKTRPLSPYARyEDLKPPTSPSPTAPTGVSPSVSSTSSVPavpDTAPAT 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 492 LTHDASATTFSQNQGLVITAHHPTPSSSPCALALSPVPQPPAVGPPQPHLTFIHPKPVSLTGVRHKQppkivpAPKPEPV 571
Cdd:PLN03209 482 AATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHA------QPKPRPL 555
|
.
gi 46849805 572 S 572
Cdd:PLN03209 556 S 556
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
348-539 |
6.41e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 39.47 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 348 PPPSSLPAADPSSPPSQGNILPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTSQTVDPFIQPADFGPSEPPLSVPQP 427
Cdd:PRK12323 396 APAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAA 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 428 flpvftmtllspgPAPAPVPTALPLVPSPAPTLNPP---TPPAFLQPqkfaGVSKSTPVITHTASATLTHDASATTfsqn 504
Cdd:PRK12323 476 -------------AAAAPARAAPAAAPAPADDDPPPweeLPPEFASP----APAQPDAAPAGWVAESIPDPATADP---- 534
|
170 180 190
....*....|....*....|....*....|....*
gi 46849805 505 qglviTAHHPTPSSSPCAlalSPVPQPPAVGPPQP 539
Cdd:PRK12323 535 -----DDAFETLAPAPAA---APAPRAAAATEPVV 561
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
337-568 |
7.38e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 39.17 E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 337 SSSRSIFGSMLPPPSSLPAADPSSPPSQGNILPNTALPPASLPNSLITSSAAPSLDPTEGQGCERTSQTVDPFIQPADFG 416
Cdd:pfam17823 120 SSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAA 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 417 PSEPPLSVP-QPFLPVFTMTLL-SPGPAPAPVPTALPLVPSPAPTLNPPTPPAFLQPQKFAGVSKST--------PVIT- 485
Cdd:pfam17823 200 SSAPATLTPaRGISTAATATGHpAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAagtinmgdPHARr 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 486 -----HTASATLTHDASATTFSQNQGLVI--TAHHPTPSSSPcalALSPVPQPPAVGPPQPHLTFIHPKPVSLTGVRHKQ 558
Cdd:pfam17823 280 lspakHMPSDTMARNPAAPMGAQAQGPIIqvSTDQPVHNTAG---EPTPSPSNTTLEPNTPKSVASTNLAVVTTTKAQAK 356
|
250
....*....|
gi 46849805 559 PPKIVPAPKP 568
Cdd:pfam17823 357 EPSASPVPVL 366
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
406-560 |
7.64e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 39.68 E-value: 7.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 406 VDPFIQPADFGPSEPPLSVP----QPFLPVFTmtllsPGPAPAPVPTALPLVPSPAPTLNP-------PTPPAFLQPQKF 474
Cdd:PRK10263 337 VEPVTQTPPVASVDVPPAQPtvawQPVPGPQT-----GEPVIAPAPEGYPQQSQYAQPAVQyneplqqPVQPQQPYYAPA 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 475 AGVSKSTPVITHTASATLTHDASATTFSQNQGLVITAH-------HPTPSSSPCALALSPVPQPPAVGPPQ--PHLTFIH 545
Cdd:PRK10263 412 AEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAeeqqstfAPQSTYQTEQTYQQPAAQEPLYQQPQpvEQQPVVE 491
|
170
....*....|....*
gi 46849805 546 PKPVsLTGVRHKQPP 560
Cdd:PRK10263 492 PEPV-VEETKPARPP 505
|
|
| half-pint |
TIGR01645 |
poly-U binding splicing factor, half-pint family; The proteins represented by this model ... |
344-492 |
8.15e-03 |
|
poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Pssm-ID: 130706 [Multi-domain] Cd Length: 612 Bit Score: 39.28 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 344 GSMLPPPSSLpaADPSSPpsqgnilpnTALPPASLPNSLITSSAAPSLDPTEGQ---GCERTSQTVDPFIQPADFGPS-- 418
Cdd:TIGR01645 279 GKCVTPPDAL--LQPATV---------SAIPAAAAVAAAAATAKIMAAEAVAGAavlGPRAQSPATPSSSLPTDIGNKav 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 419 -EPPLSVPQPF--LPVFTMTLLSPGPAPAPVPTALPLVPSPApTLNPP-------TPPAFLQPQKFAGVSKSTPVITHTA 488
Cdd:TIGR01645 348 vSSAKKEAEEVppLPQAAPAVVKPGPMEIPTPVPPPGLAIPS-LVAPPglvapteINPSFLASPRKKMKREKLPVTFGAL 426
|
....
gi 46849805 489 SATL 492
Cdd:TIGR01645 427 DDTL 430
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
432-578 |
9.15e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 39.08 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 46849805 432 FTMTLL--------SPGPAPAPVPTALPLVPSPAPTLNPPTPPAflQPQKFAGVSKSTPVITHTASATLTHDASATTFSQ 503
Cdd:PRK07994 349 VEMTLLrmlafhpaAPLPEPEVPPQSAAPAASAQATAAPTAAVA--PPQAPAVPPPPASAPQQAPAVPLPETTSQLLAAR 426
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 46849805 504 NQGLVITAHHPTPSSSPcALALSPVPQPPA---VGPPQPHLTFIHPKPVSLTGVRHKQPPKIVPAPKPEPVSLVLKNA 578
Cdd:PRK07994 427 QQLQRAQGATKAKKSEP-AAASRARPVNSAlerLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKA 503
|
|
| |
