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Conserved domains on  [gi|37594467|ref|NP_803877|]
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uridine diphosphate glucose pyrophosphatase NUDT14 isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NUDIX_UGPPase_Nudt14 cd18887
UDP-glucose pyrophosphatase; UDP-glucose pyrophosphatase (UGPPase) (EC 3.6.1.45; also known as ...
25-212 1.06e-97

UDP-glucose pyrophosphatase; UDP-glucose pyrophosphatase (UGPPase) (EC 3.6.1.45; also known as NUDIX (nucleoside diphosphate-linked moiety X)) motif 14; Nudt14) hydrolyzes the pyrophosphate of the nucleoside diphosphate sugar to generate glucose-1-P and UMP. In mammals, UDP-glucose is the glucosyl donor for the synthesis of the storage polysaccharide glycogen. UGPPase, as a regulator of UDP-glucose, could play a regulatory role, but it has been shown to prefer ADP-ribose over UDP-glucose. Like other members of the NUDIX hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site.


:

Pssm-ID: 467597 [Multi-domain]  Cd Length: 181  Bit Score: 281.75  E-value: 1.06e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467  25 YRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLaavdqdgprELQPALPGSAGVTVELC 104
Cdd:cd18887   1 YKQNGKKKTWDFVKSHDSVAILLYNKTRDAFVLVKQFRPAVYASQVRAAERNGG---------KDTEKYPPELGYTYELC 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467 105 AGLVDQPgLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHL 184
Cdd:cd18887  72 AGLVDKD-KSLEEIAQEEILEECGYDVPLEDLEKITSFRSGVGTSGSRQTLFYAEVTDDMKVSEGGGVEEEGEMIEVVEL 150
                       170       180
                ....*....|....*....|....*...
gi 37594467 185 PLEGAQAFADDPDIPKTLGVIFGVSWFL 212
Cdd:cd18887 151 PVEEAKEFIFDEEIPKPPGLLFALLWFL 178
 
Name Accession Description Interval E-value
NUDIX_UGPPase_Nudt14 cd18887
UDP-glucose pyrophosphatase; UDP-glucose pyrophosphatase (UGPPase) (EC 3.6.1.45; also known as ...
25-212 1.06e-97

UDP-glucose pyrophosphatase; UDP-glucose pyrophosphatase (UGPPase) (EC 3.6.1.45; also known as NUDIX (nucleoside diphosphate-linked moiety X)) motif 14; Nudt14) hydrolyzes the pyrophosphate of the nucleoside diphosphate sugar to generate glucose-1-P and UMP. In mammals, UDP-glucose is the glucosyl donor for the synthesis of the storage polysaccharide glycogen. UGPPase, as a regulator of UDP-glucose, could play a regulatory role, but it has been shown to prefer ADP-ribose over UDP-glucose. Like other members of the NUDIX hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site.


Pssm-ID: 467597 [Multi-domain]  Cd Length: 181  Bit Score: 281.75  E-value: 1.06e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467  25 YRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLaavdqdgprELQPALPGSAGVTVELC 104
Cdd:cd18887   1 YKQNGKKKTWDFVKSHDSVAILLYNKTRDAFVLVKQFRPAVYASQVRAAERNGG---------KDTEKYPPELGYTYELC 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467 105 AGLVDQPgLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHL 184
Cdd:cd18887  72 AGLVDKD-KSLEEIAQEEILEECGYDVPLEDLEKITSFRSGVGTSGSRQTLFYAEVTDDMKVSEGGGVEEEGEMIEVVEL 150
                       170       180
                ....*....|....*....|....*...
gi 37594467 185 PLEGAQAFADDPDIPKTLGVIFGVSWFL 212
Cdd:cd18887 151 PVEEAKEFIFDEEIPKPPGLLFALLWFL 178
TIGR00052 TIGR00052
nudix-type nucleoside diphosphatase, YffH/AdpP family; Members of this family include proteins ...
23-212 9.31e-35

nudix-type nucleoside diphosphatase, YffH/AdpP family; Members of this family include proteins of about 200 amino acids, including the recently characterized nudix hydrolase YffH, shows to be highly active as a GDP-mannose pyrophosphatase. It also includes the C-terminal half of a 361-amino acid protein, TrgB from Rhodobacter sphaeroides, shown experimentally to help confer tellurite resistance. This model also hits a region near the C-terminus of a 1092-amino acid protein of C. elegans. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 129162 [Multi-domain]  Cd Length: 185  Bit Score: 121.85  E-value: 9.31e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467    23 LHYRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAgeveRRF-PGSLaavdqdgprelqpalpgsagvtv 101
Cdd:TIGR00052  27 LFKGGESIRVTREIYDRGNAAAVLLYDPKKDTVVLIEQFRIAAYV----NGEePWLL----------------------- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467   102 ELCAGLVDQpGLSLEEVACKEAWEECGYHLapSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGlVEEGElIEV 181
Cdd:TIGR00052  80 ELSAGMVEK-GESPEDVARREAIEEAGYQV--KNLRKLLSFYMSPGGVTELIHLFIAEVDDNQAAGIGGG-ADEEE-IEV 154
                         170       180       190
                  ....*....|....*....|....*....|.
gi 37594467   182 VHLPLEGAQAFADDPDIPKTLGVIFGVSWFL 212
Cdd:TIGR00052 155 LHLVFSQALQWIKEGKIDNGKTVILLQWLQL 185
MutT COG0494
8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX ...
41-202 1.13e-14

8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family [Defense mechanisms];


Pssm-ID: 440260 [Multi-domain]  Cd Length: 143  Bit Score: 68.52  E-value: 1.13e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467  41 DSVTVLLFNSSRRsLVLVKQFRPAVYAGEVErrFPGslaavdqdgprelqpalpgsagvtvelcaGLVDqPGLSLEEVAC 120
Cdd:COG0494  14 PAVVVVLLDDDGR-VLLVRRYRYGVGPGLWE--FPG-----------------------------GKIE-PGESPEEAAL 60
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467 121 KEAWEECGYHlaPSDLRRVATYWSGvGLTGSRQTMFYTEVTdaqRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDIPK 200
Cdd:COG0494  61 RELREETGLT--AEDLELLGELPSP-GYTDEKVHVFLARGL---GPGEEVGLDDEDEFIEVRWVPLDEALALVTAGEIAK 134

                ..
gi 37594467 201 TL 202
Cdd:COG0494 135 TL 136
PRK15009 PRK15009
GDP-mannose pyrophosphatase NudK; Provisional
44-198 2.67e-12

GDP-mannose pyrophosphatase NudK; Provisional


Pssm-ID: 184971  Cd Length: 191  Bit Score: 62.94  E-value: 2.67e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467   44 TVLLFNSSRRSLVLVKQFRPAVYAGEVErrfpgslaavdqdgprelqpalpgsAGVTVELCAGLVDQPglslEEVAC--K 121
Cdd:PRK15009  49 TILLYNAKKKTVVLIRQFRVATWVNGNE-------------------------SGQLIETCAGLLDND----EPEVCirK 99
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37594467  122 EAWEECGYHLApsDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLveEGELIEVVHLPLEGAQAFADDPDI 198
Cdd:PRK15009 100 EAIEETGYEVG--EVRKLFELYMSPGGVTELIHFFIAEYSDSQRANAGGGV--EDEDIEVLELPFSQALEMIKTGEI 172
 
Name Accession Description Interval E-value
NUDIX_UGPPase_Nudt14 cd18887
UDP-glucose pyrophosphatase; UDP-glucose pyrophosphatase (UGPPase) (EC 3.6.1.45; also known as ...
25-212 1.06e-97

UDP-glucose pyrophosphatase; UDP-glucose pyrophosphatase (UGPPase) (EC 3.6.1.45; also known as NUDIX (nucleoside diphosphate-linked moiety X)) motif 14; Nudt14) hydrolyzes the pyrophosphate of the nucleoside diphosphate sugar to generate glucose-1-P and UMP. In mammals, UDP-glucose is the glucosyl donor for the synthesis of the storage polysaccharide glycogen. UGPPase, as a regulator of UDP-glucose, could play a regulatory role, but it has been shown to prefer ADP-ribose over UDP-glucose. Like other members of the NUDIX hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site.


Pssm-ID: 467597 [Multi-domain]  Cd Length: 181  Bit Score: 281.75  E-value: 1.06e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467  25 YRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLaavdqdgprELQPALPGSAGVTVELC 104
Cdd:cd18887   1 YKQNGKKKTWDFVKSHDSVAILLYNKTRDAFVLVKQFRPAVYASQVRAAERNGG---------KDTEKYPPELGYTYELC 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467 105 AGLVDQPgLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHL 184
Cdd:cd18887  72 AGLVDKD-KSLEEIAQEEILEECGYDVPLEDLEKITSFRSGVGTSGSRQTLFYAEVTDDMKVSEGGGVEEEGEMIEVVEL 150
                       170       180
                ....*....|....*....|....*...
gi 37594467 185 PLEGAQAFADDPDIPKTLGVIFGVSWFL 212
Cdd:cd18887 151 PVEEAKEFIFDEEIPKPPGLLFALLWFL 178
TIGR00052 TIGR00052
nudix-type nucleoside diphosphatase, YffH/AdpP family; Members of this family include proteins ...
23-212 9.31e-35

nudix-type nucleoside diphosphatase, YffH/AdpP family; Members of this family include proteins of about 200 amino acids, including the recently characterized nudix hydrolase YffH, shows to be highly active as a GDP-mannose pyrophosphatase. It also includes the C-terminal half of a 361-amino acid protein, TrgB from Rhodobacter sphaeroides, shown experimentally to help confer tellurite resistance. This model also hits a region near the C-terminus of a 1092-amino acid protein of C. elegans. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 129162 [Multi-domain]  Cd Length: 185  Bit Score: 121.85  E-value: 9.31e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467    23 LHYRQNGAQKSWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAgeveRRF-PGSLaavdqdgprelqpalpgsagvtv 101
Cdd:TIGR00052  27 LFKGGESIRVTREIYDRGNAAAVLLYDPKKDTVVLIEQFRIAAYV----NGEePWLL----------------------- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467   102 ELCAGLVDQpGLSLEEVACKEAWEECGYHLapSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGlVEEGElIEV 181
Cdd:TIGR00052  80 ELSAGMVEK-GESPEDVARREAIEEAGYQV--KNLRKLLSFYMSPGGVTELIHLFIAEVDDNQAAGIGGG-ADEEE-IEV 154
                         170       180       190
                  ....*....|....*....|....*....|.
gi 37594467   182 VHLPLEGAQAFADDPDIPKTLGVIFGVSWFL 212
Cdd:TIGR00052 155 LHLVFSQALQWIKEGKIDNGKTVILLQWLQL 185
NUDIX_GDPMK cd24157
GDP-mannose hydrolase (GDPMK), and similar proteins; GDP-mannose hydrolase (GDPMK) is a NUDIX ...
41-189 1.52e-30

GDP-mannose hydrolase (GDPMK), and similar proteins; GDP-mannose hydrolase (GDPMK) is a NUDIX enzyme that uses GDP-mannose as the preferred substrate. It is distinct from Nudix ADP-ribose hydrolases. GDPMK and ADP-ribose pyrophosphatase seem to use similar catalytic mechanism. However, GDPMK hydrolysis does not rely on a single glutamate as the catalytic base; rather, it is dependent on residues that coordinate the magnesium ions and residues that position the substrate properly for catalysis. Members of the NUDIX hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of NUDIX hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance _ "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.


Pssm-ID: 467605  Cd Length: 146  Bit Score: 109.96  E-value: 1.52e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467  41 DSVTVLLFNSSRRSLVLVKQFRPAVYAGeverrfpgslaavdqdgprelqpalpGSAGVTVELCAGLVDqpGLSLEEVAC 120
Cdd:cd24157   5 DAAAVLLYDPKRKTVVLVRQFRAPAYLG--------------------------GGDGWLIEACAGLLD--GDDPEDCIR 56
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 37594467 121 KEAWEECGYHLapSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGA 189
Cdd:cd24157  57 REAEEETGYRL--GDLEKVFTAYSSPGIVTERIHLFIAEYSSADRVGAGGGLAEEGEDIEVLELPLDEA 123
NUDIX_ADPRase cd24155
Adp Ribose Pyrophosphatase; ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ...
33-198 4.62e-21

Adp Ribose Pyrophosphatase; ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. It also contains a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the NUDIX motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. UDP-glucose pyrophosphatase (UGPPase) (EC 3.6.1.45; also known as nucleoside diphosphate-linked moiety X)) motif 14; Nudt14) hydrolyzes the pyrophosphate of the nucleoside diphosphate sugar to generate glucose-1-P and UMP. In mammals, UDP-glucose is the glucosyl donor for the synthesis of the storage polysaccharide glycogen. UGPPase, as a regulator of UDP-glucose, could play a regulatory role, but it has been shown to prefer ADP-ribose over UDP-glucose. Like other members of the NUDIX hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site.


Pssm-ID: 467603 [Multi-domain]  Cd Length: 187  Bit Score: 86.43  E-value: 4.62e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467  33 SWDFMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAgeverrfpgslaavdqdgpRELQPALpgsagvtVELCAGLVDqPG 112
Cdd:cd24155  36 TREIFERGDAVAVLPYDPVRDEVVLIEQFRIGALA-------------------RDESPWL-------LEIVAGMID-AG 88
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467 113 LSLEEVACKEAWEECGyhLAPSDLRRVATYWSGVGLTGSRQTMFYTEVtDAQRSGPGGGLVEEGELIEVVHLPLEGAQAF 192
Cdd:cd24155  89 ETPEDVARREAEEEAG--LTLDALEPIASYYPSPGGSTERVHLYLGLV-DLSDLGGIHGLAEEGEDIRVHVVPFDEAMAL 165

                ....*.
gi 37594467 193 ADDPDI 198
Cdd:cd24155 166 LDDGEI 171
NUDIX_ADPRase_Nudt5_UGPPase_Nudt14 cd03424
ADP-ribose pyrophosphatase, UDP-glucose pyrophosphatase, and similar proteins; ADP-ribose ...
39-206 2.27e-17

ADP-ribose pyrophosphatase, UDP-glucose pyrophosphatase, and similar proteins; ADP-ribose pyrophosphatase (ADPRase) ( NUDIX (Nucleoside diphosphate-linked moiety X)) motif 5; Nudt5) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. It also contains a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the NUDIX motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. UDP-glucose pyrophosphatase (UGPPase) (EC 3.6.1.45; also known as nucleoside diphosphate-linked moiety X)) motif 14; Nudt14) hydrolyzes the pyrophosphate of the nucleoside diphosphate sugar to generate glucose-1-P and UMP. In mammals, UDP-glucose is the glucosyl donor for the synthesis of the storage polysaccharide glycogen. UGPPase, as a regulator of UDP-glucose, could play a regulatory role, but it has been shown to prefer ADP-ribose over UDP-glucose. Like other members of the NUDIX hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site.


Pssm-ID: 467530 [Multi-domain]  Cd Length: 134  Bit Score: 75.24  E-value: 2.27e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467  39 THDSVTVLLFNSSRRsLVLVKQFRPAVyageverrfpgslaavdqdgprelqpalpgsAGVTVELCAGLVDqPGLSLEEV 118
Cdd:cd03424   1 HPGAVAVLAITDDGK-VVLVRQYRHPV-------------------------------GRVLLELPAGKID-PGEDPEEA 47
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467 119 ACKEAWEECGYHlaPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGgglvEEGELIEVVHLPLEGAQAFADDPDI 198
Cdd:cd03424  48 ARRELEEETGYT--AGDLELLGSFYPSPGFSDERIHLFLAEDLTPVSEQAL----DEDEFIEVVLVPLEEALEMIEDGEI 121
                       170
                ....*....|
gi 37594467 199 --PKTLGVIF 206
Cdd:cd03424 122 tdAKTLAALL 131
MutT COG0494
8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX ...
41-202 1.13e-14

8-oxo-dGTP pyrophosphatase MutT and related house-cleaning NTP pyrophosphohydrolases, NUDIX family [Defense mechanisms];


Pssm-ID: 440260 [Multi-domain]  Cd Length: 143  Bit Score: 68.52  E-value: 1.13e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467  41 DSVTVLLFNSSRRsLVLVKQFRPAVYAGEVErrFPGslaavdqdgprelqpalpgsagvtvelcaGLVDqPGLSLEEVAC 120
Cdd:COG0494  14 PAVVVVLLDDDGR-VLLVRRYRYGVGPGLWE--FPG-----------------------------GKIE-PGESPEEAAL 60
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467 121 KEAWEECGYHlaPSDLRRVATYWSGvGLTGSRQTMFYTEVTdaqRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDIPK 200
Cdd:COG0494  61 RELREETGLT--AEDLELLGELPSP-GYTDEKVHVFLARGL---GPGEEVGLDDEDEFIEVRWVPLDEALALVTAGEIAK 134

                ..
gi 37594467 201 TL 202
Cdd:COG0494 135 TL 136
PRK15009 PRK15009
GDP-mannose pyrophosphatase NudK; Provisional
44-198 2.67e-12

GDP-mannose pyrophosphatase NudK; Provisional


Pssm-ID: 184971  Cd Length: 191  Bit Score: 62.94  E-value: 2.67e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467   44 TVLLFNSSRRSLVLVKQFRPAVYAGEVErrfpgslaavdqdgprelqpalpgsAGVTVELCAGLVDQPglslEEVAC--K 121
Cdd:PRK15009  49 TILLYNAKKKTVVLIRQFRVATWVNGNE-------------------------SGQLIETCAGLLDND----EPEVCirK 99
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 37594467  122 EAWEECGYHLApsDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLveEGELIEVVHLPLEGAQAFADDPDI 198
Cdd:PRK15009 100 EAIEETGYEVG--EVRKLFELYMSPGGVTELIHFFIAEYSDSQRANAGGGV--EDEDIEVLELPFSQALEMIKTGEI 172
NUDIX_ADPRase_Nudt5 cd18888
ADP-ribose pyrophosphatase; ADP-ribose pyrophosphatase (ADPRase) (also known as NUDIX ...
43-192 6.84e-11

ADP-ribose pyrophosphatase; ADP-ribose pyrophosphatase (ADPRase) (also known as NUDIX (Nucleoside diphosphate-linked moiety X)) motif 5; Nudt5) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. It also contains a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the NUDIX motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity.


Pssm-ID: 467598 [Multi-domain]  Cd Length: 149  Bit Score: 58.26  E-value: 6.84e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467  43 VTVLLFNSSRRSLVLVKQFRPAVyageverrfpgslaavdqdgprelqpalpgsAGVTVELCAGLVDqPGLSLEEVACKE 122
Cdd:cd18888   8 IAILKRKLKPPELVLVKQYRPPV-------------------------------NAYTIEFPAGLVD-PGESPEQAALRE 55
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 37594467 123 AWEECGYHlAPSDLRRVATYWSGVGLTGSRQTMFYTEV-TDAQRSGPGGGLVEEGELIEVVHLPLEGAQAF 192
Cdd:cd18888  56 LKEETGYT-GEKVLSVSPPLALDPGLSNANMKLVTVEVdGDDPENQNPKQELEDGEFIEVILVPLNELLER 125
nudF PRK10729
ADP-ribose pyrophosphatase NudF; Provisional
36-181 1.72e-04

ADP-ribose pyrophosphatase NudF; Provisional


Pssm-ID: 182682 [Multi-domain]  Cd Length: 202  Bit Score: 41.26  E-value: 1.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37594467   36 FMKTHDSVtVLLFNSSRRSLVLVKQFRpavyageverrfpgsLAAVDQDGprelQPALpgsagvtVELCAGLVdQPGLSL 115
Cdd:PRK10729  46 FERGHAAV-LLPFDPVRDEVVLIEQIR---------------IAAYDTSE----TPWL-------LEMVAGMI-EEGESV 97
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 37594467  116 EEVACKEAWEECGyhLAPSDLRRVATYWSGVGLTGSRQTMFYTEVtDAQRSGPGGGLVEEGELIEV 181
Cdd:PRK10729  98 EDVARREAIEEAG--LIVGRTKPVLSYLASPGGTSERSSIMVGEV-DATTASGIHGLADENEDIRV 160
NUDIX_RppH cd04665
RNA pyrophosphohydrolase; The initiation of mRNA degradation often requires deprotection of ...
100-162 2.96e-03

RNA pyrophosphohydrolase; The initiation of mRNA degradation often requires deprotection of its 5' end. In eukaryotes, the 5'-methylguanosine (cap) structure is principally removed by the NUDIX family decapping enzyme Dcp2, yielding a 5'-monophosphorylated RNA that is a substrate for 5' exoribonucleases. In bacteria, the 5'-triphosphate group of primary transcripts is also converted to a 5' monophosphate by a NUDIX protein called RNA pyrophosphohydrolase (RppH), allowing access to both endo- and 5' exoribonucleases. NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467550 [Multi-domain]  Cd Length: 121  Bit Score: 36.46  E-value: 2.96e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 37594467 100 TVELCAGLVdQPGLSLEEVACKEAWEECGYHLapSDLRRVATYWSGVGLTGSRQTMFYTEVTD 162
Cdd:cd04665  23 GWEFPGGKR-EPGETIEEAARRELYEETGAVI--FELKPLGQYSVHGKGQEFFGAVYYAEVKS 82
NUDIX_Hydrolase cd02883
NUDIX hydrolase superfamily; NUDIX hydrolase is a superfamily of enzymes found in all three ...
102-179 5.33e-03

NUDIX hydrolase superfamily; NUDIX hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue NUDIX motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of NUDIX hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the NUDIX hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.


Pssm-ID: 467528 [Multi-domain]  Cd Length: 106  Bit Score: 35.46  E-value: 5.33e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 37594467 102 ELCAGLVDqPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELI 179
Cdd:cd02883  29 ELPGGGVE-PGETPEEAAVREVREETGLDVEVLRLLGVYEFPDPDEGRHVVVLVFLARVVGGEPPPLDDEEISEVRWV 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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