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Conserved domains on  [gi|240849451|ref|NP_796351|]
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ciliary microtubule inner protein 2B isoform 1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2475 super family cl11240
Protein of unknown function (DUF2475); This family of proteins has no known function.
 16-85 2.82e-08

Protein of unknown function (DUF2475); This family of proteins has no known function.


The actual alignment was detected with superfamily member pfam10629:

Pssm-ID: 431404  Cd Length: 67  Bit Score: 50.08  E-value: 2.82e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240849451   16 PHYIPGYTGHCPLLRFSMGQTYGQVTGQLLrgppglawppahrtllppiQSPRSPVISKGRLPPRRGHER 85
Cdd:pfam10629   2 PHLMPGYRGYCPQVKYSFGDTYGNTTAKLF-------------------QDYRSAALEKSTTPYSKGGHF 52
 
Name Accession Description Interval E-value
DUF2475 pfam10629
Protein of unknown function (DUF2475); This family of proteins has no known function.
 16-85 2.82e-08

Protein of unknown function (DUF2475); This family of proteins has no known function.


Pssm-ID: 431404  Cd Length: 67  Bit Score: 50.08  E-value: 2.82e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240849451   16 PHYIPGYTGHCPLLRFSMGQTYGQVTGQLLrgppglawppahrtllppiQSPRSPVISKGRLPPRRGHER 85
Cdd:pfam10629   2 PHLMPGYRGYCPQVKYSFGDTYGNTTAKLF-------------------QDYRSAALEKSTTPYSKGGHF 52
 
Name Accession Description Interval E-value
DUF2475 pfam10629
Protein of unknown function (DUF2475); This family of proteins has no known function.
 16-85 2.82e-08

Protein of unknown function (DUF2475); This family of proteins has no known function.


Pssm-ID: 431404  Cd Length: 67  Bit Score: 50.08  E-value: 2.82e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240849451   16 PHYIPGYTGHCPLLRFSMGQTYGQVTGQLLrgppglawppahrtllppiQSPRSPVISKGRLPPRRGHER 85
Cdd:pfam10629   2 PHLMPGYRGYCPQVKYSFGDTYGNTTAKLF-------------------QDYRSAALEKSTTPYSKGGHF 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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