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Conserved domains on  [gi|28559078|ref|NP_787035|]
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spermine oxidase isoform 3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02568 super family cl33517
polyamine oxidase
 146-183 6.49e-15

polyamine oxidase


The actual alignment was detected with superfamily member PLN02568:

Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 71.78  E-value: 6.49e-15
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 28559078  146 PMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYR 183
Cdd:PLN02568 499 PLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536
Amino_oxidase super family cl38049
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 45-115 1.71e-11

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


The actual alignment was detected with superfamily member pfam01593:

Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 61.74  E-value: 1.71e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28559078    45 EQGFtDVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSHgNPIYHLAEANGLLEETTDGERSVGRISLY 115
Cdd:pfam01593  12 RAGH-DVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHGAQ-PPLLALLKELGLEDRLVLPDPAPFYTVLF 80
 
Name Accession Description Interval E-value
PLN02568 PLN02568
polyamine oxidase
 146-183 6.49e-15

polyamine oxidase


Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 71.78  E-value: 6.49e-15
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 28559078  146 PMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYR 183
Cdd:PLN02568 499 PLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 45-115 1.71e-11

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 61.74  E-value: 1.71e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28559078    45 EQGFtDVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSHgNPIYHLAEANGLLEETTDGERSVGRISLY 115
Cdd:pfam01593  12 RAGH-DVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHGAQ-PPLLALLKELGLEDRLVLPDPAPFYTVLF 80
PLN02568 PLN02568
polyamine oxidase
 50-107 5.96e-11

polyamine oxidase


Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 60.23  E-value: 5.96e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 28559078   50 DVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGER 107
Cdd:PLN02568  35 ELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGSLESDEPWEC 92
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
20-98 7.62e-10

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 56.85  E-value: 7.62e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28559078  20 RRRGQPRVVVIGAglaglaaakalleqGFT-------------DVTVLEASSHIGGRVQSVKLG--HATFELGATWIHGS 84
Cdd:COG1231   3 RRARGKDVVIVGA--------------GLAglaaarelrkaglDVTVLEARDRVGGRVWTLRFGddGLYAELGAMRIPPS 68

                        90
                ....*....|....
gi 28559078  85 HGNpIYHLAEANGL 98
Cdd:COG1231  69 HTN-LLALARELGL 81
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 149-179 2.02e-06

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 47.10  E-value: 2.02e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 28559078   149 VLFSGEATHRKYYSTTHGALLSGQREAARLI 179
Cdd:pfam01593 416 LFFAGEHTSTGYPGTVEGAIESGRRAARAVL 446
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
149-180 5.57e-04

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 39.90  E-value: 5.57e-04
                        10        20        30
                ....*....|....*....|....*....|..
gi 28559078 149 VLFSGEATHRKYYSTTHGALLSGQREAARLIE 180
Cdd:COG1231 405 IHFAGEHTSDEWPGWVEGALESGERAAAEILA 436
 
Name Accession Description Interval E-value
PLN02568 PLN02568
polyamine oxidase
 146-183 6.49e-15

polyamine oxidase


Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 71.78  E-value: 6.49e-15
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 28559078  146 PMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYR 183
Cdd:PLN02568 499 PLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 45-115 1.71e-11

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 61.74  E-value: 1.71e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28559078    45 EQGFtDVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSHgNPIYHLAEANGLLEETTDGERSVGRISLY 115
Cdd:pfam01593  12 RAGH-DVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHGAQ-PPLLALLKELGLEDRLVLPDPAPFYTVLF 80
PLN02568 PLN02568
polyamine oxidase
 50-107 5.96e-11

polyamine oxidase


Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 60.23  E-value: 5.96e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 28559078   50 DVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGER 107
Cdd:PLN02568  35 ELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGSLESDEPWEC 92
PLN02676 PLN02676
polyamine oxidase
 25-98 1.02e-10

polyamine oxidase


Pssm-ID: 215362 [Multi-domain]  Cd Length: 487  Bit Score: 59.73  E-value: 1.02e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28559078   25 PRVVVIGAGLAGLAAAKALLEQGFTDVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSHG---NPIYHLAEANGL 98
Cdd:PLN02676  27 PSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGpesNPIWELANKLKL 103
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
20-98 7.62e-10

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 56.85  E-value: 7.62e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28559078  20 RRRGQPRVVVIGAglaglaaakalleqGFT-------------DVTVLEASSHIGGRVQSVKLG--HATFELGATWIHGS 84
Cdd:COG1231   3 RRARGKDVVIVGA--------------GLAglaaarelrkaglDVTVLEARDRVGGRVWTLRFGddGLYAELGAMRIPPS 68

                        90
                ....*....|....
gi 28559078  85 HGNpIYHLAEANGL 98
Cdd:COG1231  69 HTN-LLALARELGL 81
PLN02268 PLN02268
probable polyamine oxidase
 25-143 9.43e-09

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 53.92  E-value: 9.43e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28559078   25 PRVVVIGAGLAGLAAAKALLEQGFtDVTVLEASSHIGGRVQSVKLGHATFELGATWIHG-SHGNPIYHLAEANGLLEETT 103
Cdd:PLN02268   1 PSVIVIGGGIAGIAAARALHDASF-KVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGvCNENPLAPLIGRLGLPLYRT 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 28559078  104 DGERSVgrisLYSKNGVACYL-TNHGRRIPKDVVEEFSDLY 143
Cdd:PLN02268  80 SGDNSV----LYDHDLESYALfDMDGNQVPQELVTKVGETF 116
PLN02328 PLN02328
lysine-specific histone demethylase 1 homolog
 148-183 4.64e-07

lysine-specific histone demethylase 1 homolog


Pssm-ID: 215187 [Multi-domain]  Cd Length: 808  Bit Score: 49.22  E-value: 4.64e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 28559078  148 QVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYR 183
Cdd:PLN02328 645 RVFFAGEATNKQYPATMHGAFLSGMREAANILRVAR 680
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
45-94 1.76e-06

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 43.67  E-value: 1.76e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 28559078    45 EQGFtDVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSHGNPIYHLAE 94
Cdd:pfam13450  17 KRGF-RVLVLEKRDRLGGNAYSYRVPGYVFDYGAHIFHGSDEPNVRDLLD 65
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
 149-179 2.02e-06

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 47.10  E-value: 2.02e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 28559078   149 VLFSGEATHRKYYSTTHGALLSGQREAARLI 179
Cdd:pfam01593 416 LFFAGEHTSTGYPGTVEGAIESGRRAARAVL 446
PLN03000 PLN03000
amine oxidase
 148-178 1.87e-05

amine oxidase


Pssm-ID: 178578 [Multi-domain]  Cd Length: 881  Bit Score: 44.24  E-value: 1.87e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 28559078  148 QVLFSGEATHRKYYSTTHGALLSGQREAARL 178
Cdd:PLN03000 589 RLFFAGEATTRRYPATMHGAFVTGLREAANM 619
PLN02529 PLN02529
lysine-specific histone demethylase 1
 148-183 1.88e-05

lysine-specific histone demethylase 1


Pssm-ID: 178144 [Multi-domain]  Cd Length: 738  Bit Score: 44.50  E-value: 1.88e-05
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 28559078  148 QVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYR 183
Cdd:PLN02529 564 RLFFAGEATTRQYPATMHGAFLSGLREASRILHVAR 599
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 50-81 8.41e-05

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 42.14  E-value: 8.41e-05
                        10        20        30
                ....*....|....*....|....*....|..
gi 28559078  50 DVTVLEASSHIGGRVQSVKLGHATFELGATWI 81
Cdd:COG1233  28 RVTVLEKNDTPGGRARTFERPGFRFDVGPSVL 59
PLN02976 PLN02976
amine oxidase
 141-190 1.81e-04

amine oxidase


Pssm-ID: 215527 [Multi-domain]  Cd Length: 1713  Bit Score: 41.39  E-value: 1.81e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 28559078   141 DLYNEPMQ--VLFSGEATHRKYYSTTHGALLSGQREAARLIemyrDLFQQGT 190
Cdd:PLN02976 1143 DILGRPVEncLFFAGEATCKEHPDTVGGAMMSGLREAVRII----DILNTGN 1190
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
149-180 5.57e-04

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 39.90  E-value: 5.57e-04
                        10        20        30
                ....*....|....*....|....*....|..
gi 28559078 149 VLFSGEATHRKYYSTTHGALLSGQREAARLIE 180
Cdd:COG1231 405 IHFAGEHTSDEWPGWVEGALESGERAAAEILA 436
PLN02676 PLN02676
polyamine oxidase
 149-180 8.23e-03

polyamine oxidase


Pssm-ID: 215362 [Multi-domain]  Cd Length: 487  Bit Score: 36.23  E-value: 8.23e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 28559078  149 VLFSGEATHRKYYSTTHGALLSGQREAARLIE 180
Cdd:PLN02676 440 VYFTGEHTSEKYNGYVHGAYLAGIDTANDLLE 471
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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