NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|40254669|ref|NP_775388|]
View 

olfactory marker protein b [Danio rerio]

Protein Classification

Olfactory_mark domain-containing protein( domain architecture ID 10534934)

Olfactory_mark domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Olfactory_mark pfam06554
Olfactory marker protein; This family consists of several olfactory marker proteins. ...
4-152 8.89e-104

Olfactory marker protein; This family consists of several olfactory marker proteins. Expression of the olfactory marker protein (OMP) is highly restricted to mature olfactory receptor neurons in virtually all vertebrate species from fish to man.


:

Pssm-ID: 399511  Cd Length: 149  Bit Score: 293.20  E-value: 8.89e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254669     4 ELTFNPDVQLTEMMRLRVQSLQQRGQKRQDGERLLKSNEHVYSLDFSEQALHFTRWNIRISSPGRLNIIATSQLWTPDLT 83
Cdd:pfam06554   1 ELTFRQDVQLTEVMRLRVQSLQQRGQKRQDGEKLLRPNESVYRLDFSQQKLRFLRWNVCLDKPGKLTITGTSQLWTPDLT 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 40254669    84 HLMTRQLLEPTGLFWRSADDENIQCYEADAQEFGERIAELAKVRKVMYFLFAFEDGLSPESVECSIEFQ 152
Cdd:pfam06554  81 NLMTRQLLEPVGIFWRKAGDDAIQCYEADAQEFGERIAELAKIRKVMYFLIAFGDGLEPANVKCSIVFN 149
 
Name Accession Description Interval E-value
Olfactory_mark pfam06554
Olfactory marker protein; This family consists of several olfactory marker proteins. ...
4-152 8.89e-104

Olfactory marker protein; This family consists of several olfactory marker proteins. Expression of the olfactory marker protein (OMP) is highly restricted to mature olfactory receptor neurons in virtually all vertebrate species from fish to man.


Pssm-ID: 399511  Cd Length: 149  Bit Score: 293.20  E-value: 8.89e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254669     4 ELTFNPDVQLTEMMRLRVQSLQQRGQKRQDGERLLKSNEHVYSLDFSEQALHFTRWNIRISSPGRLNIIATSQLWTPDLT 83
Cdd:pfam06554   1 ELTFRQDVQLTEVMRLRVQSLQQRGQKRQDGEKLLRPNESVYRLDFSQQKLRFLRWNVCLDKPGKLTITGTSQLWTPDLT 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 40254669    84 HLMTRQLLEPTGLFWRSADDENIQCYEADAQEFGERIAELAKVRKVMYFLFAFEDGLSPESVECSIEFQ 152
Cdd:pfam06554  81 NLMTRQLLEPVGIFWRKAGDDAIQCYEADAQEFGERIAELAKIRKVMYFLIAFGDGLEPANVKCSIVFN 149
 
Name Accession Description Interval E-value
Olfactory_mark pfam06554
Olfactory marker protein; This family consists of several olfactory marker proteins. ...
4-152 8.89e-104

Olfactory marker protein; This family consists of several olfactory marker proteins. Expression of the olfactory marker protein (OMP) is highly restricted to mature olfactory receptor neurons in virtually all vertebrate species from fish to man.


Pssm-ID: 399511  Cd Length: 149  Bit Score: 293.20  E-value: 8.89e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254669     4 ELTFNPDVQLTEMMRLRVQSLQQRGQKRQDGERLLKSNEHVYSLDFSEQALHFTRWNIRISSPGRLNIIATSQLWTPDLT 83
Cdd:pfam06554   1 ELTFRQDVQLTEVMRLRVQSLQQRGQKRQDGEKLLRPNESVYRLDFSQQKLRFLRWNVCLDKPGKLTITGTSQLWTPDLT 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 40254669    84 HLMTRQLLEPTGLFWRSADDENIQCYEADAQEFGERIAELAKVRKVMYFLFAFEDGLSPESVECSIEFQ 152
Cdd:pfam06554  81 NLMTRQLLEPVGIFWRKAGDDAIQCYEADAQEFGERIAELAKIRKVMYFLIAFGDGLEPANVKCSIVFN 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH