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Conserved domains on  [gi|25282463|ref|NP_741990|]
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cell division cycle protein 20 homolog [Rattus norvegicus]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 11455410)

WD40 repeat domain-containing protein similar to proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
PubMed:  10322433|8090199
SCOP:  4002744

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
190-471 9.08e-55

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 188.97  E-value: 9.08e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 190 VDWSS-GNVLAVA-LDNSVYLWNAGSGDILQLLqmEQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSH 267
Cdd:COG2319 126 VAFSPdGKTLASGsADGTVRLWDLATGKLLRTL--TGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGH 203

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 268 SARVSSLSW--NSYILSSGSRSGHIHHHDVRVAEHhVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGEsgw 345
Cdd:COG2319 204 TGAVRSVAFspDGKLLASGSADGTVRLWDLATGKL-LRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGE--- 279

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 346 vPLQTFTQHQGAVKAVAWCPwQSNILATGGgtSDRHIRIWNVCSGACLSAVDVHS-QVCSILWSPHYKELISGHgfAQNQ 424
Cdd:COG2319 280 -LLRTLTGHSGGVNSVAFSP-DGKLLASGS--DDGTVRLWDLATGKLLRTLTGHTgAVRSVAFSPDGKTLASGS--DDGT 353

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 25282463 425 LVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWR 471
Cdd:COG2319 354 VRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWD 400
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
190-471 9.08e-55

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 188.97  E-value: 9.08e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 190 VDWSS-GNVLAVA-LDNSVYLWNAGSGDILQLLqmEQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSH 267
Cdd:COG2319 126 VAFSPdGKTLASGsADGTVRLWDLATGKLLRTL--TGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGH 203

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 268 SARVSSLSW--NSYILSSGSRSGHIHHHDVRVAEHhVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGEsgw 345
Cdd:COG2319 204 TGAVRSVAFspDGKLLASGSADGTVRLWDLATGKL-LRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGE--- 279

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 346 vPLQTFTQHQGAVKAVAWCPwQSNILATGGgtSDRHIRIWNVCSGACLSAVDVHS-QVCSILWSPHYKELISGHgfAQNQ 424
Cdd:COG2319 280 -LLRTLTGHSGGVNSVAFSP-DGKLLASGS--DDGTVRLWDLATGKLLRTLTGHTgAVRSVAFSPDGKTLASGS--DDGT 353

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 25282463 425 LVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWR 471
Cdd:COG2319 354 VRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWD 400
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 190-471 1.17e-49

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 171.75  E-value: 1.17e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 190 VDWS-SGNVLAVA-LDNSVYLWNAGSGDILQLLQmeQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSH 267
Cdd:cd00200  15 VAFSpDGKLLATGsGDGTIKVWDLETGELLRTLK--GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 268 SARVSSLSW--NSYILSSGSRSGHIHHHDVRVAEHhVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGEsgw 345
Cdd:cd00200  93 TSYVSSVAFspDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--- 168

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 346 vPLQTFTQHQGAVKAVAWCPWQSNILATGggtSDRHIRIWNVCSGACLSAVDVHSQ-VCSILWSPHYKELISGHgfAQNQ 424
Cdd:cd00200 169 -CVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENgVNSVAFSPDGYLLASGS--EDGT 242

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 25282463 425 LVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWR 471
Cdd:cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 302-336 5.70e-08

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 48.85  E-value: 5.70e-08
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 25282463    302 VATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVW 336
Cdd:smart00320   5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
WD40 pfam00400
WD domain, G-beta repeat;
302-336 4.95e-07

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 46.18  E-value: 4.95e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 25282463   302 VATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVW 336
Cdd:pfam00400   4 LKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
 229-379 1.94e-06

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 50.47  E-value: 1.94e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463  229 ISSVAWikeGNYLA--VGTSNAE--VQLWDVQQQKRLRNMTSHSARVSSLSWNS---YILSSGSRSG------------- 288
Cdd:PLN00181 535 LSGICW---NSYIKsqVASSNFEgvVQVWDVARSQLVTEMKEHEKRVWSIDYSSadpTLLASGSDDGsvklwsinqgvsi 611

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463  289 -----------------------------HIHHHDVRVAEHHVATLSGHSQEVCGLRWApDGRHLASGGNDNIVNVWP-- 337
Cdd:PLN00181 612 gtiktkaniccvqfpsesgrslafgsadhKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDls 690

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 25282463  338 ---SGPGESgwvPLQTFTQHQGaVKAVAWCPWQSNILATGGGTSD 379
Cdd:PLN00181 691 msiSGINET---PLHSFMGHTN-VKNFVGLSVSDGYIATGSETNE 731
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
190-471 9.08e-55

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 188.97  E-value: 9.08e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 190 VDWSS-GNVLAVA-LDNSVYLWNAGSGDILQLLqmEQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSH 267
Cdd:COG2319 126 VAFSPdGKTLASGsADGTVRLWDLATGKLLRTL--TGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGH 203

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 268 SARVSSLSW--NSYILSSGSRSGHIHHHDVRVAEHhVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGEsgw 345
Cdd:COG2319 204 TGAVRSVAFspDGKLLASGSADGTVRLWDLATGKL-LRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGE--- 279

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 346 vPLQTFTQHQGAVKAVAWCPwQSNILATGGgtSDRHIRIWNVCSGACLSAVDVHS-QVCSILWSPHYKELISGHgfAQNQ 424
Cdd:COG2319 280 -LLRTLTGHSGGVNSVAFSP-DGKLLASGS--DDGTVRLWDLATGKLLRTLTGHTgAVRSVAFSPDGKTLASGS--DDGT 353

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 25282463 425 LVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWR 471
Cdd:COG2319 354 VRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWD 400
WD40 COG2319
WD40 repeat [General function prediction only];
197-471 9.57e-53

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 183.57  E-value: 9.57e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 197 VLAVALDNSVYLWNAGSGDILQLLQmeQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSW 276
Cdd:COG2319  93 LASASADGTVRLWDLATGLLLRTLT--GHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAF 170

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 277 --NSYILSSGSRSGHIHHHDVRVAEhHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGEsgwvPLQTFTQH 354
Cdd:COG2319 171 spDGKLLASGSDDGTVRLWDLATGK-LLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGK----LLRTLTGH 245

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 355 QGAVKAVAWCPwQSNILATGGGtsDRHIRIWNVCSGACLSAVDVHSQ-VCSILWSPHYKELISGHgfAQNQLVIWKYPTM 433
Cdd:COG2319 246 SGSVRSVAFSP-DGRLLASGSA--DGTVRLWDLATGELLRTLTGHSGgVNSVAFSPDGKLLASGS--DDGTVRLWDLATG 320

                       250       260       270
                ....*....|....*....|....*....|....*...
gi 25282463 434 AKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWR 471
Cdd:COG2319 321 KLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWD 358
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 190-471 1.17e-49

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 171.75  E-value: 1.17e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 190 VDWS-SGNVLAVA-LDNSVYLWNAGSGDILQLLQmeQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSH 267
Cdd:cd00200  15 VAFSpDGKLLATGsGDGTIKVWDLETGELLRTLK--GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 268 SARVSSLSW--NSYILSSGSRSGHIHHHDVRVAEHhVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGEsgw 345
Cdd:cd00200  93 TSYVSSVAFspDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--- 168

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 346 vPLQTFTQHQGAVKAVAWCPWQSNILATGggtSDRHIRIWNVCSGACLSAVDVHSQ-VCSILWSPHYKELISGHgfAQNQ 424
Cdd:cd00200 169 -CVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENgVNSVAFSPDGYLLASGS--EDGT 242

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 25282463 425 LVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWR 471
Cdd:cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
153-470 6.52e-45

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 162.39  E-value: 6.52e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 153 SQKATPGSSRKACRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQmeQPGDYISSV 232
Cdd:COG2319   7 AALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLL--GHTAAVLSV 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 233 AWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSW--NSYILSSGSRSGHIHHHDVRVAEhHVATLSGHSQ 310
Cdd:COG2319  85 AFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFspDGKTLASGSADGTVRLWDLATGK-LLRTLTGHSG 163

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 311 EVCGLRWAPDGRHLASGGNDNIVNVWPSGPGEsgwvPLQTFTQHQGAVKAVAWCPwQSNILATGGGtsDRHIRIWNVCSG 390
Cdd:COG2319 164 AVTSVAFSPDGKLLASGSDDGTVRLWDLATGK----LLRTLTGHTGAVRSVAFSP-DGKLLASGSA--DGTVRLWDLATG 236

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 391 ACLSAVDVHS-QVCSILWSPHYKELISGHgfAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRL 469
Cdd:COG2319 237 KLLRTLTGHSgSVRSVAFSPDGRLLASGS--ADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRL 314


                .
gi 25282463 470 W 470
Cdd:COG2319 315 W 315
WD40 COG2319
WD40 repeat [General function prediction only];
190-387 2.06e-35

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 136.19  E-value: 2.06e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 190 VDWSS-GNVLAVA-LDNSVYLWNAGSGDILQLLqmEQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSH 267
Cdd:COG2319 210 VAFSPdGKLLASGsADGTVRLWDLATGKLLRTL--TGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGH 287

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 268 SARVSSLSW--NSYILSSGSRSGHIHHHDVRVAEHhVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGEsgw 345
Cdd:COG2319 288 SGGVNSVAFspDGKLLASGSDDGTVRLWDLATGKL-LRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGE--- 363

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 25282463 346 vPLQTFTQHQGAVKAVAWCPwQSNILATGGGtsDRHIRIWNV 387
Cdd:COG2319 364 -LLRTLTGHTGAVTSVAFSP-DGRTLASGSA--DGTVRLWDL 401
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 301-470 9.96e-31

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 120.52  E-value: 9.96e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 301 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGEsgwvPLQTFTQHQGAVKAVAWCPWQSNILATGggtSDR 380
Cdd:cd00200   1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADGTYLASGS---SDK 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 381 HIRIWNVCSGACLSAVDVHSQ-VCSILWSPHyKELISGhGFAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVA 459
Cdd:cd00200  74 TIRLWDLETGECVRTLTGHTSyVSSVAFSPD-GRILSS-SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151

                       170
                ....*....|.
gi 25282463 460 SAAADETLRLW 470
Cdd:cd00200 152 SSSQDGTIKLW 162
WD40 COG2319
WD40 repeat [General function prediction only];
316-471 3.62e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 64.93  E-value: 3.62e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 316 RWAPDGRHLASGGNDNIVNVWPSGPGesgwVPLQTFTQHQGAVKAVAWCPWQSNILATGGgtsDRHIRIWNVCSGACLSA 395
Cdd:COG2319   1 ALSADGAALAAASADLALALLAAALG----ALLLLLLGLAAAVASLAASPDGARLAAGAG---DLTLLLLDAAAGALLAT 73

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 25282463 396 VDVH-SQVCSILWSPHYKELISGhgFAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWR 471
Cdd:COG2319  74 LLGHtAAVLSVAFSPDGRLLASA--SADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWD 148
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 302-336 5.70e-08

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 48.85  E-value: 5.70e-08
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 25282463    302 VATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVW 336
Cdd:smart00320   5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
WD40 pfam00400
WD domain, G-beta repeat;
302-336 4.95e-07

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 46.18  E-value: 4.95e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 25282463   302 VATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVW 336
Cdd:pfam00400   4 LKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
 229-379 1.94e-06

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 50.47  E-value: 1.94e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463  229 ISSVAWikeGNYLA--VGTSNAE--VQLWDVQQQKRLRNMTSHSARVSSLSWNS---YILSSGSRSG------------- 288
Cdd:PLN00181 535 LSGICW---NSYIKsqVASSNFEgvVQVWDVARSQLVTEMKEHEKRVWSIDYSSadpTLLASGSDDGsvklwsinqgvsi 611

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463  289 -----------------------------HIHHHDVRVAEHHVATLSGHSQEVCGLRWApDGRHLASGGNDNIVNVWP-- 337
Cdd:PLN00181 612 gtiktkaniccvqfpsesgrslafgsadhKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDls 690

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 25282463  338 ---SGPGESgwvPLQTFTQHQGaVKAVAWCPWQSNILATGGGTSD 379
Cdd:PLN00181 691 msiSGINET---PLHSFMGHTN-VKNFVGLSVSDGYIATGSETNE 731
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 432-470 2.23e-06

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 44.23  E-value: 2.23e-06
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 25282463    432 TMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLW 470
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 345-386 2.56e-06

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 44.23  E-value: 2.56e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 25282463    345 WVPLQTFTQHQGAVKAVAWCPwQSNILATGGgtSDRHIRIWN 386
Cdd:smart00320   2 GELLKTLKGHTGPVTSVAFSP-DGKYLASGS--DDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
436-470 8.26e-06

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 42.72  E-value: 8.26e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 25282463   436 VAELKGHTARVLSLTMSPDGATVASAAADETLRLW 470
Cdd:pfam00400   4 LKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
WD40 COG2319
WD40 repeat [General function prediction only];
190-256 9.18e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 47.98  E-value: 9.18e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 25282463 190 VDWSS-GNVLAVA-LDNSVYLWNAGSGDILQLLQmeQPGDYISSVAWIKEGNYLAVGTSNAEVQLWDVQ 256
Cdd:COG2319 336 VAFSPdGKTLASGsDDGTVRLWDLATGELLRTLT--GHTGAVTSVAFSPDGRTLASGSADGTVRLWDLA 402
ANAPC4_WD40 pfam12894
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ...
 229-278 8.30e-05

Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,


Pssm-ID: 403945 [Multi-domain]  Cd Length: 91  Bit Score: 41.49  E-value: 8.30e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 25282463   229 ISSVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWNS 278
Cdd:pfam12894  41 VTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAGSDLITCLGWGE 90
WD40 pfam00400
WD domain, G-beta repeat;
345-386 1.07e-04

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 39.64  E-value: 1.07e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 25282463   345 WVPLQTFTQHQGAVKAVAWCPwQSNILATGGgtSDRHIRIWN 386
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSP-DGKLLASGS--DDGTVKVWD 39
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 436-471 5.24e-04

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 41.94  E-value: 5.24e-04
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 25282463 436 VAELKGHTARVLSLTMSPDGATVASAAADETLRLWR 471
Cdd:cd00200   2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD 37
WD40 COG2319
WD40 repeat [General function prediction only];
366-472 1.04e-03

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 41.44  E-value: 1.04e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463 366 WQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHYKELISGHGfaQNQLVIWKYPTMAKVAELKGHTAR 445
Cdd:COG2319   3 SADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAG--DLTLLLLDAAAGALLATLLGHTAA 80

                        90       100
                ....*....|....*....|....*..
gi 25282463 446 VLSLTMSPDGATVASAAADETLRLWRC 472
Cdd:COG2319  81 VLSVAFSPDGRLLASASADGTVRLWDL 107
ANAPC4_WD40 pfam12894
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ...
 274-364 1.75e-03

Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,


Pssm-ID: 403945 [Multi-domain]  Cd Length: 91  Bit Score: 37.64  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25282463   274 LSWNSY--ILSSGSRSGHIHHHdvRVAEHHVATLSG--HSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGEsgwvPLQ 349
Cdd:pfam12894   1 MSWCPTmdLIALATEDGELLLH--RLNWQRVWTLSPdkEDLEVTSLAWRPDGKLLAVGYSDGTVRLLDAENGK----IVH 74

                          90
                  ....*....|....*
gi 25282463   350 TFTQHQGAVKAVAWC 364
Cdd:pfam12894  75 HFSAGSDLITCLGWG 89
Nsa1_WDR74-like cd22850
Ribosome biogenesis protein Nsa1 and similar proteins; Ribosome biogenesis protein Nsa1 ...
 369-406 5.24e-03

Ribosome biogenesis protein Nsa1 and similar proteins; Ribosome biogenesis protein Nsa1 (Nop7-associated 1) from fungi and WDR74 (WD repeat-containing protein 74) from mammals and plants, are homologous essential factors for ribosome assembly. In cooperation with the assembly factor Rix7/NVL2, Nsa1/WDR74 participates in an early cleavage of the pre-rRNA processing pathway. Rix7/NVL2 is a type II double ring, AAA-ATPase, that may mediate the release of Nsa1/WDR74 from nucleolar pre-60S particles. Nsa1/WDR74 contains an N-terminal seven-bladed beta-propeller WD40 domain that associates with the D1-AAA domain of the AAA-ATPase Rix7/NVL2, and a flexible lysine-rich C-terminus that extends outward from the WD40 domain, and is required for nucleolar localization.


Pssm-ID: 439302 [Multi-domain]  Cd Length: 333  Bit Score: 39.15  E-value: 5.24e-03
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 25282463 369 NILATGGgtSDRHIRIWNVCSGACLSAVDVHSQVCSIL 406
Cdd:cd22850 290 PYLASGG--LDRYLRVFDIETRELLAKVYLGKQILTVV 325
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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