|
Name |
Accession |
Description |
Interval |
E-value |
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
427-1053 |
1.53e-21 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 101.41 E-value: 1.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 427 TERLEAETAERL-KLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDgvgggvyKLKYERVARELEF 505
Cdd:pfam01576 424 SERQRAELAEKLsKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQ-------KLNLSTRLRQLED 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 506 TKRRLHTQHEHDLEQLVALKKH---LEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQR 582
Cdd:pfam01576 497 ERNSLQEQLEEEEEAKRNVERQlstLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKN 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 583 KFDAECQSLQDAVRQERQ---AKERYGREKDVLQAEKFTLEQTLADTRLDLEF----KEEKLASLQRELEEMTfggGTEE 655
Cdd:pfam01576 577 RLQQELDDLLVDLDHQRQlvsNLEKKQKKFDQMLAEEKAISARYAEERDRAEAeareKETRALSLARALEEAL---EAKE 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 656 EFA-------------------------QLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRES 710
Cdd:pfam01576 654 ELErtnkqlraemedlvsskddvgknvhELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDL 733
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 711 QQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDR-DRVDRDAEEALNQklrrdLRKYKALLK 789
Cdd:pfam01576 734 QARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQiDAANKGREEAVKQ-----LKKLQAQMK 808
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 790 DAQTQLERLKADTpgktliRQLRNQLEDAEsarslamKARQTAEAELTEVQAMFDESHRARNDAEEranaahrDRAELQA 869
Cdd:pfam01576 809 DLQRELEEARASR------DEILAQSKESE-------KKLKNLEAELLQLQEDLAASERARRQAQQ-------ERDELAD 868
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 870 QIEENEeelgelmKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLD--NVENLGDPSMAMMS----K 943
Cdd:pfam01576 869 EIASGA-------SGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEqlTTELAAERSTSQKSesarQ 941
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 944 RLELRTKELESRL-ELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDM-----REEFHAVSS 1017
Cdd:pfam01576 942 QLERQNKELKAKLqEMEGTVKSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVllqveDERRHADQY 1021
|
650 660 670
....*....|....*....|....*....|....*...
gi 24647351 1018 REQ--ESLTRRKDLEKKVEQMESEgAALKNDLRLALQR 1053
Cdd:pfam01576 1022 KDQaeKGNSRMKQLKRQLEEAEEE-ASRANAARRKLQR 1058
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
549-1090 |
1.70e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.54 E-value: 1.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 549 WKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRL 628
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 629 DLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARR 708
Cdd:COG1196 310 RRRELEERLEELEEELAE------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 709 ESQQRDEELEEVRgNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALL 788
Cdd:COG1196 384 LAEELLEALRAAA-ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 789 KDAQTQLERLKAdtpGKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRAR----------------ND 852
Cdd:COG1196 463 ELLAELLEEAAL---LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaayeAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 853 AEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNT-EQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVE 931
Cdd:COG1196 540 LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKiRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 932 NLgdpsmammSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREE 1011
Cdd:COG1196 620 DT--------LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24647351 1012 FHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQAMEEEGEEELSESDESLSSVGSISDLEDRLR 1090
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
493-1043 |
8.56e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.23 E-value: 8.56e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 493 KLKYERVARELEFTKRRLHtQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQvvgqwkrKAQKMTNEMNDLRMLLEEQNA 572
Cdd:COG1196 217 ELKEELKELEAELLLLKLR-ELEAELEELEAELEELEAELEELEAELAELEA-------ELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 573 RNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEmtfggg 652
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE------ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 653 TEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGyKKIKALE 732
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE-EEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 733 CQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLR 812
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 813 NQLE-------------DAESARSLAMKARQTAEAELTEVQAMFDESHRA--------RNDAEERANAAHRDRAELQAQI 871
Cdd:COG1196 522 LAGAvavligveaayeaALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflplDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 872 EENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMS------KRL 945
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAalleaeAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 946 ELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTR 1025
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
570
....*....|....*...
gi 24647351 1026 RKDLEKKVEQMESEGAAL 1043
Cdd:COG1196 762 LEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
402-1059 |
7.04e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.26 E-value: 7.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 402 IREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDA 481
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 482 ENEDGVGGGVYKLKYERVARELEFTKRRLHTQHE---HDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTN 558
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELEsleAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 559 EMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKdvLQAEKFTLEQTLADTRLDLEFKEEKLA 638
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE--LQEELERLEEALEELREELEEAEQALD 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 639 SLQRELEEMTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETM-----------RKEAR 707
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAlggrlqavvveNLNAA 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 708 RESQQRDEELE-------EVRGNGYKKIKALECQLETEHEERTLLLRE----KHELERRLSSMEDRDRVDRDAEEALNQ- 775
Cdd:TIGR02168 559 KKAIAFLKQNElgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDlvkfDPKLRKALSYLLGGVLVVDDLDNALELa 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 776 -KLRRDLR---------------------------KYKALLKDAQTQLERLKAD-TPGKTLIRQLRNQLEDAESARSLAM 826
Cdd:TIGR02168 639 kKLRPGYRivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKiAELEKALAELRKELEELEEELEQLR 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 827 KARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNT--EQINVSEAEF 904
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEleAQIEQLKEEL 798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 905 K-----LNEMEAERNNLKEQVAELQHRLDNVENlgdpSMAMMSKRLElrtkELESRLELEQATRARLEVQVNRHKEALEK 979
Cdd:TIGR02168 799 KalreaLDELRAELTLLNEEAANLRERLESLER----RIAATERRLE----DLEEQIEELSEDIESLAAEIEELEELIEE 870
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 980 LQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQ 1059
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
425-1089 |
1.77e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 85.12 E-value: 1.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 425 IATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEmelicaksdlNGISEDEDAENEdgvgggVYKLKYERVARELE 504
Cdd:TIGR02169 203 LRREREKAERYQALLKEKREYEGYELLKEKEALERQKE----------AIERQLASLEEE------LEKLTEEISELEKR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 505 ftkrrlhtqhehdLEQLVALKKHLEMKLSDAYEEvvEQRQVvgqwKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKF 584
Cdd:TIGR02169 267 -------------LEEIEQLLEELNKKIKDLGEE--EQLRV----KEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 585 DAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMtfgggtEEEFAQLRRSK 664
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY------REKLEKLKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 665 NETER-------RAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEArRESQQRDEELEEVRGNGYKKIKALECQLET 737
Cdd:TIGR02169 402 NELKReldrlqeELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI-KKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 738 EHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLR------RDLRKYK------------ALLK--------DA 791
Cdd:TIGR02169 481 VEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvAQLGSVGeryataievaagNRLNnvvveddaVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 792 QTQLERLKADTPGK------TLIRQLRNQL------------------------------------EDAESARSLAMKAR 829
Cdd:TIGR02169 561 KEAIELLKRRKAGRatflplNKMRDERRDLsilsedgvigfavdlvefdpkyepafkyvfgdtlvvEDIEAARRLMGKYR 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 830 Q-TAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNE 908
Cdd:TIGR02169 641 MvTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 909 MEAERNNLKEQVAELQHRLdnvenlgdpsmammsKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVtqSK 988
Cdd:TIGR02169 721 IEKEIEQLEQEEEKLKERL---------------EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL--ND 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 989 MREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQAMEEEGEEE 1068
Cdd:TIGR02169 784 LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
730 740
....*....|....*....|.
gi 24647351 1069 LSESDESLSSVGSISDLEDRL 1089
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRL 884
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
408-967 |
2.49e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.60 E-value: 2.49e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 408 ELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDgv 487
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER-- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 488 gggvyKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKhlemKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLL 567
Cdd:COG1196 311 -----RRELEERLEELEEELAELEEELEELEEELEELEE----ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 568 EEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEm 647
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA- 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 648 tfgggTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQR-DEELEEVRGNGYK 726
Cdd:COG1196 461 -----LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlAGAVAVLIGVEAA 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 727 KIKALE------CQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKA 800
Cdd:COG1196 536 YEAALEaalaaaLQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 801 DTPGKTLIrqLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGE 880
Cdd:COG1196 616 YVLGDTLL--GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 881 LMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQ 960
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
....*..
gi 24647351 961 ATRARLE 967
Cdd:COG1196 774 REIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
598-1055 |
1.57e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 598 ERQAK--ERYgrekDVLQAEKFTLEQTLAdtRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETERRAKEQE 675
Cdd:COG1196 206 ERQAEkaERY----RELKEELKELEAELL--LLKLRELEAELEELEAELEE------LEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 676 EELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQR---DEELEEVRgngyKKIKALECQLETEHEERTLLLREKHEL 752
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRrelEERLEELE----EELAELEEELEELEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 753 ERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADtpgKTLIRQLRNQLEDAESARSLAMKARQTA 832
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL---AAQLEELEEAEEALLERLERLEEELEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 833 EAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEeneeelgelmkkysATVKQLNTEQINVSEAEFKLNEMEAE 912
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA--------------ELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 913 RNNLKEQVAELQHRLDNV-ENLGDPSMAMMSKRL-ELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMR 990
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVkAALLLAGLRGLAGAVaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24647351 991 EMQAQ--DVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIA 1055
Cdd:COG1196 573 RATFLplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
562-935 |
1.16e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 562 DLRMLLEEQ------NARNNLLEKKQRKFDAECQSLQDAVRQ--------ERQAK--ERYGRekdvLQAEKFTLEQTLAd 625
Cdd:TIGR02168 156 ERRAIFEEAagiskyKERRKETERKLERTRENLDRLEDILNElerqlkslERQAEkaERYKE----LKAELRELELALL- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 626 tRLDLEFKEEKLASLQRELEEMtfgggteeefaqlRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKE 705
Cdd:TIGR02168 231 -VLRLEELREELEELQEELKEA-------------EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 706 ARRESQQRdEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEdrdrVDRDAEEALNQKLRRDLRKYK 785
Cdd:TIGR02168 297 ISRLEQQK-QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK----EELESLEAELEELEAELEELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 786 ALLKDAQTQLERLKADtpgktlIRQLRNQLEdaesarsLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAhrDRA 865
Cdd:TIGR02168 372 SRLEELEEQLETLRSK------VAQLELQIA-------SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELK 436
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 866 ELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGD 935
Cdd:TIGR02168 437 ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
747-1059 |
2.97e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.72 E-value: 2.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 747 REKHELERRLSSMEDRDRVDRDAEEALNQkLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAE-----SA 821
Cdd:TIGR02169 153 VERRKIIDEIAGVAEFDRKKEKALEELEE-VEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEgyellKE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 822 RSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVK--------QLN 893
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEaeiaslerSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 894 TEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKRLELRtKELESRLELEQATRARLEVQVNRH 973
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL-EDLRAELEEVDKEFAETRDELKDY 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 974 KEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQR 1053
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
|
....*.
gi 24647351 1054 IADLQQ 1059
Cdd:TIGR02169 471 LYDLKE 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
437-797 |
3.98e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 3.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 437 RLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDGvgggvyklkyERVARELEFTKRRLhTQHEH 516
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL----------EELSRQISALRKDL-ARLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 517 DLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVR 596
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 597 QERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEE 676
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL------ESELEALLNERASLEEALALLRS 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 677 ELDEMAGQIQlleqaklrlemTLETMRKEARRESQQRDEELEEVRgNGYKKIKALECQLE---TEHEERTLLLREKHELE 753
Cdd:TIGR02168 895 ELEELSEELR-----------ELESKRSELRRELEELREKLAQLE-LRLEGLEVRIDNLQerlSEEYSLTLEEAEALENK 962
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 24647351 754 RRLSSMEDRDRVDR-------------DAEEAL-NQKLRRD-LRKYKALLKDAQTQLER 797
Cdd:TIGR02168 963 IEDDEEEARRRLKRlenkikelgpvnlAAIEEYeELKERYDfLTAQKEDLTEAKETLEE 1021
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
497-1061 |
4.12e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 4.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 497 ERVARELEFTKRRLHTQHE-----HDL-EQLVALKKHLE-MKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEE 569
Cdd:TIGR02168 192 EDILNELERQLKSLERQAEkaeryKELkAELRELELALLvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 570 QNARNNLLEKKQRKFDAECQSLQ----DAVRQERQAKER---YGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQR 642
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALAneisRLEQQKQILRERlanLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 643 ELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRG 722
Cdd:TIGR02168 352 ELESL------EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 723 NGYK----KIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVdrdAEEALnQKLRRDLRKYKALLKDAQTQLERL 798
Cdd:TIGR02168 426 LLKKleeaELKELQAELEELEEELEELQEELERLEEALEELREELEE---AEQAL-DAAERELAQLQARLDSLERLQENL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 799 KADTPGKTLIRQLRNQL--------------EDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERA------- 857
Cdd:TIGR02168 502 EGFSEGVKALLKNQSGLsgilgvlselisvdEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTflpldsi 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 858 -----NAAHRDRAELQAQIEENEEELGELMKKYSATV--------------------KQLNTEQINVS------------ 900
Cdd:TIGR02168 582 kgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRKALsyllggvlvvddldnalelaKKLRPGYRIVTldgdlvrpggvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 901 -------------------EAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGD-------------PSMAMMSKRLELR 948
Cdd:TIGR02168 662 tggsaktnssilerrreieELEEKIEELEEKIAELEKALAELRKELEELEEELEqlrkeleelsrqiSALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 949 TKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKD 1028
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
650 660 670
....*....|....*....|....*....|...
gi 24647351 1029 LEKKVEQMESEGAALKNDLRLALQRIADLQQAM 1061
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
402-1039 |
4.46e-13 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 74.06 E-value: 4.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 402 IREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETT-------EKLEMELICAKSDLNG 474
Cdd:pfam01576 84 LEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDIllledqnSKLSKERKLLEERISE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 475 ISEDEDAENEDGVGGGVYKLKYERVARELEFTKRRlhtqHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQ 554
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKK----EEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 555 KMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREK----DVLQAEKFTLEQTLADTRLDL 630
Cdd:pfam01576 240 KKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRrdlgEELEALKTELEDTLDTTAAQQ 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 631 EFK---EEKLASLQRELEEMTfgGGTEEEFAQLRRSKNETerrakeqeeeLDEMAGQIQLLEQAKLRLEMTLETMRKEaR 707
Cdd:pfam01576 320 ELRskrEQEVTELKKALEEET--RSHEAQLQEMRQKHTQA----------LEELTEQLEQAKRNKANLEKAKQALESE-N 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 708 RESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSME-DRDRVDRDAEEALNQ--KLRRDLRKY 784
Cdd:pfam01576 387 AELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQsELESVSSLLNEAEGKniKLSKDVSSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 785 KALLKDAQTQL-ERLKADTPGKTLIRQ-------LRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEER 856
Cdd:pfam01576 467 ESQLQDTQELLqEETRQKLNLSTRLRQledernsLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEG 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 857 ANAAHRDRAELQAQIEENEEELGELMKKYS--------ATVKQLNTEQI--NVSEAEFKLNEMEAERNNLKEQVAELQHR 926
Cdd:pfam01576 547 KKRLQRELEALTQQLEEKAAAYDKLEKTKNrlqqelddLLVDLDHQRQLvsNLEKKQKKFDQMLAEEKAISARYAEERDR 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 927 LDNVENLGDPSMAMMSKRLELRT---KELE----------------------SRLELEQATRArLEVQVNRHKEALEKLQ 981
Cdd:pfam01576 627 AEAEAREKETRALSLARALEEALeakEELErtnkqlraemedlvsskddvgkNVHELERSKRA-LEQQVEEMKTQLEELE 705
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 24647351 982 NEVTqskmremQAQDVIKKSQKSLRDMREEF-HAVSSREQESLTRRKDLEKKVEQMESE 1039
Cdd:pfam01576 706 DELQ-------ATEDAKLRLEVNMQALKAQFeRDLQARDEQGEEKRRQLVKQVRELEAE 757
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
664-1012 |
2.75e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 2.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 664 KNETERRAKEQEEELD-------EMAGQIQLLE-QAKL------------RLEMTLETMR-KEARRESQQRDEELEEVRg 722
Cdd:TIGR02168 174 RKETERKLERTRENLDrledilnELERQLKSLErQAEKaerykelkaelrELELALLVLRlEELREELEELQEELKEAE- 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 723 ngyKKIKALECQLETEHEERTLLLREKHELERRLssmedrdrvdrdaeealnQKLRRDLRKYKALLKDAQTQLERLKADt 802
Cdd:TIGR02168 253 ---EELEELTAELQELEEKLEELRLEVSELEEEI------------------EELQKELYALANEISRLEQQKQILRER- 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 803 pgktlIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELM 882
Cdd:TIGR02168 311 -----LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 883 KKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDnvenlgdpsmammskrlELRTKELESRLELEQAT 962
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE-----------------EAELKELQAELEELEEE 448
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 24647351 963 RARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQ---KSLRDMREEF 1012
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarlDSLERLQENL 501
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
567-1047 |
1.02e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.32 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 567 LEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYG---REKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRE 643
Cdd:PRK03918 202 LEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEeleKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 644 LEEMTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMR--KEARRESQQRDEELEEvR 721
Cdd:PRK03918 282 VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEelKKKLKELEKRLEELEE-R 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 722 GNGYKKIKALECQLETEHEERTLLlrEKHELERRLSSMEDRDRVDRDAEEALNQKLRRdLRKYKALLKDAQTQLERLKAD 801
Cdd:PRK03918 361 HELYEEAKAKKEELERLKKRLTGL--TPEKLEKELEELEKAKEEIEEEISKITARIGE-LKKEIKELKKAIEELKKAKGK 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 802 TP----------GKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRAR---------NDAEERANAAHR 862
Cdd:PRK03918 438 CPvcgrelteehRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIklkelaeqlKELEEKLKKYNL 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 863 DRAELQAQIEENEEELGELMKKysaTVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLdnvENLGDPSMAMMS 942
Cdd:PRK03918 518 EELEKKAEEYEKLKEKLIKLKG---EIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEL---EELGFESVEELE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 943 KRLE---------LRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDviKKSQKSLRDMREEFH 1013
Cdd:PRK03918 592 ERLKelepfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEYEELREEYL 669
|
490 500 510
....*....|....*....|....*....|....
gi 24647351 1014 AVSSREQESLTRRKDLEKKVEQMESEGAALKNDL 1047
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEEL 703
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
512-1048 |
1.20e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.83 E-value: 1.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 512 TQHEHDLEQLVALK---KHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAEC 588
Cdd:PRK02224 244 EEHEERREELETLEaeiEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 589 QSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETE 668
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED------RREEIEELEEEIEELR 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 669 RRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEaRRESQQRDEELEEVRGNGykkiKALECQLETEHEERTLLLRE 748
Cdd:PRK02224 398 ERFGDAPVDLGNAEDFLEELREERDELREREAELEAT-LRTARERVEEAEALLEAG----KCPECGQPVEGSPHVETIEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 749 KHElerRLSSMEDRDRVDRDAEEALNQKLRRdlrkyKALLKDAQTQLERL--KADTPGKtLIRQLRNQLEDAESARSLAM 826
Cdd:PRK02224 473 DRE---RVEELEAELEDLEEEVEEVEERLER-----AEDLVEAEDRIERLeeRREDLEE-LIAERRETIEEKRERAEELR 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 827 KARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIeeneeelgelmkkysatvkqlnteqinvsEAEFKL 906
Cdd:PRK02224 544 ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI-----------------------------ESLERI 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 907 NEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKRLElRTKELESRLELEQATRARLEVQvnRHKEALEKLQNEVTQ 986
Cdd:PRK02224 595 RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRE-RKRELEAEFDEARIEEAREDKE--RAEEYLEQVEEKLDE 671
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24647351 987 SKMREMQAQDVI---KKSQKSLRDMREEFHAVSSREQesltRRKDLEKKVEQMESEGAALKNDLR 1048
Cdd:PRK02224 672 LREERDDLQAEIgavENELEELEELRERREALENRVE----ALEALYDEAEELESMYGDLRAELR 732
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
531-979 |
1.35e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 65.56 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 531 KLSDAYEEVVEQRQVVGQWKRKaqkmTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQsLQDAVRQERQAKERYGREKD 610
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAEL----QEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 611 VLQAEKFTLEQtLADTRLDLEFKEEKLASLQRELEE--MTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLL 688
Cdd:COG4717 147 RLEELEERLEE-LRELEEELEELEAELAELQEELEEllEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 689 EQAKLRLEMTLETMRKEARRESQQR-----------DEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLS 757
Cdd:COG4717 226 EEELEQLENELEAAALEERLKEARLllliaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 758 SMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKAdtpgktlIRQLRNQLEDAESARSLAmKARQTAEAELT 837
Cdd:COG4717 306 ELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEE-------LQELLREAEELEEELQLE-ELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 838 EVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATvkQLNTEqinVSEAEFKLNEMEAERNNLK 917
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEE---LEELEEELEELEEELEELR 452
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24647351 918 EQVAELQHRLDNVENLGDPSMAmmskRLELRTKELESRLELEQATRARLEVQV-NRHKEALEK 979
Cdd:COG4717 453 EELAELEAELEQLEEDGELAEL----LQELEELKAELRELAEEWAALKLALELlEEAREEYRE 511
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
570-1059 |
5.16e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.93 E-value: 5.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 570 QNARNNLLEKKqRKFDAECQSLQDAVRQERQAKERYGREKDvlqaEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMTf 649
Cdd:PRK03918 161 ENAYKNLGEVI-KEIKRRIERLEKFIKRTENIEELIKEKEK----ELEEVLREINEISSELPELREELEKLEKEVKELE- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 650 ggGTEEEFAQLRRSKNETERRAKEQEEELDEmagqiqlleqaklrlemtletmRKEARRESQQRDEELEEVRGNgYKKIK 729
Cdd:PRK03918 235 --ELKEEIEELEKELESLEGSKRKLEEKIRE----------------------LEERIEELKKEIEELEEKVKE-LKELK 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 730 ALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRdLRKYKALLKDAQTQLERLKADTPGKTLIR 809
Cdd:PRK03918 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER-LEELKKKLKELEKRLEELEERHELYEEAK 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 810 QLRNQLEDAESarSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEE---------------N 874
Cdd:PRK03918 369 AKKEELERLKK--RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcgrelT 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 875 EEELGELMKKYSATVKQLNTEQINVSEAEFKLN----EMEAERNN---------LKEQVAELQHRLD--NVENLGDPS-- 937
Cdd:PRK03918 447 EEHRKELLEEYTAELKRIEKELKEIEEKERKLRkelrELEKVLKKeseliklkeLAEQLKELEEKLKkyNLEELEKKAee 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 938 ---MAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHA 1014
Cdd:PRK03918 527 yekLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLE 606
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 24647351 1015 VSSREQE---SLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQ 1059
Cdd:PRK03918 607 LKDAEKElerEEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
780-1102 |
5.27e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 5.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 780 DLRKYKAL--LKDAQTQLERLKAdtpgktLIRQLRNQL-------EDAESARSLAMKARQtAEAELT-----EVQAMFDE 845
Cdd:COG1196 171 KERKEEAErkLEATEENLERLED------ILGELERQLeplerqaEKAERYRELKEELKE-LEAELLllklrELEAELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 846 SHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQH 925
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 926 RLDNVENlgdpSMAMMSKRLELRTKEL---ESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQ 1002
Cdd:COG1196 324 ELAELEE----ELEELEEELEELEEELeeaEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 1003 KSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQAMEEEGEEELSESDESLSSVGSI 1082
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340
....*....|....*....|
gi 24647351 1083 SDLEDRLRPVHVKRSSQQSL 1102
Cdd:COG1196 480 AELLEELAEAAARLLLLLEA 499
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
542-1056 |
9.45e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 63.32 E-value: 9.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 542 QRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQR----KFDAECQSLQDAVRQERQaKERYGREKDVLQAEKF 617
Cdd:pfam12128 219 NRQQVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRlshlHFGYKSDETLIASRQEER-QETSAELNQLLRTLDD 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 618 TLEQTLADTRLDLEFKEEKLASLQRELEEMTfgggteeefAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEM 697
Cdd:pfam12128 298 QWKEKRDELNGELSAADAAVAKDRSELEALE---------DQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTG 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 698 TLETMRKEARRESQQRDEELEevrgngyKKIKALECQLETEHEERTLLLRekhelerrlssmedrdrVDRDAEEALNQKL 777
Cdd:pfam12128 369 KHQDVTAKYNRRRSKIKEQNN-------RDIAGIKDKLAKIREARDRQLA-----------------VAEDDLQALESEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 778 RRDLRKYKALLKDAQTQLE--------RLKADTPGKTLIRQLRN---QLEDAESARSLAMKARQTAEAELTEVQAMFDES 846
Cdd:pfam12128 425 REQLEAGKLEFNEEEYRLKsrlgelklRLNQATATPELLLQLENfdeRIERAREEQEAANAEVERLQSELRQARKRRDQA 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 847 HRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQ-----LNTEQINVSEAEFKLNEMEAERNNlkeQVA 921
Cdd:pfam12128 505 SEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQsigkvISPELLHRTDLDPEVWDGSVGGEL---NLY 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 922 ELQHRLDNVENlgdPSMAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTqskmremQAQDVIKKS 1001
Cdd:pfam12128 582 GVKLDLKRIDV---PEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREET-------FARTALKNA 651
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 24647351 1002 QKSLRDMREEFHAVSSREQESLTRRKDL-EKKVEQMESEGAALKNDLRLALQRIAD 1056
Cdd:pfam12128 652 RLDLRRLFDEKQSEKDKKNKALAERKDSaNERLNSLEAQLKQLDKKHQAWLEEQKE 707
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
520-1042 |
1.75e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 62.11 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 520 QLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQER 599
Cdd:pfam01576 65 RLAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLE 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 600 QAKERygrekdvLQAEKFTLEQTLADTRLDLEFKEEKLASLQreleemtfgggteeefaqlrRSKNETERRAKEQEEELD 679
Cdd:pfam01576 145 DQNSK-------LSKERKLLEERISEFTSNLAEEEEKAKSLS--------------------KLKNKHEAMISDLEERLK 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 680 EMAGQIQLLEQAKLRLEMTLETMRkEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 759
Cdd:pfam01576 198 KEEKGRQELEKAKRKLEGESTDLQ-EQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISEL 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 760 E---DRDRVDRDAEEALNQKLRRDLRKYKALLKD-----AQTQLERLKADTPGKTLIRQLRnqlEDAESARSLAMKARQT 831
Cdd:pfam01576 277 QedlESERAARNKAEKQRRDLGEELEALKTELEDtldttAAQQELRSKREQEVTELKKALE---EETRSHEAQLQEMRQK 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 832 AEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNteqinvsEAEFKLNEMEA 911
Cdd:pfam01576 354 HTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQ-------ELQARLSESER 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 912 ERNNLKEQVAELQHRLDNVENLGDpSMAMMSKRLELRTKELESRLE-----LEQATRARLEV-----QVNRHKEAL-EKL 980
Cdd:pfam01576 427 QRAELAEKLSKLQSELESVSSLLN-EAEGKNIKLSKDVSSLESQLQdtqelLQEETRQKLNLstrlrQLEDERNSLqEQL 505
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24647351 981 QNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAA 1042
Cdd:pfam01576 506 EEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAA 567
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
783-1059 |
3.16e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 3.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 783 KYKALLKDAQTQLERLKAD-TPGKTLIRQLRNQLEDAESARSLAMKARQTaEAELTEVQAMFdeshrarndAEERANAAH 861
Cdd:TIGR02168 169 KYKERRKETERKLERTRENlDRLEDILNELERQLKSLERQAEKAERYKEL-KAELRELELAL---------LVLRLEELR 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 862 RDRAELQAQIEeneeelgelmkkysATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLgdpsmamm 941
Cdd:TIGR02168 239 EELEELQEELK--------------EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE-------- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 942 SKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQE 1021
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
250 260 270
....*....|....*....|....*....|....*...
gi 24647351 1022 SLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQ 1059
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
565-995 |
3.16e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.94 E-value: 3.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 565 MLLEEQNARNNLLEKKQRK----FDAECQSLQDAVRQERQAKERYGRekdvLQAEKFTLEQTLADTRLDLEFKEEKLASL 640
Cdd:COG4717 46 MLLERLEKEADELFKPQGRkpelNLKELKELEEELKEAEEKEEEYAE----LQEELEELEEELEELEAELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 641 QRELEemtfGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEV 720
Cdd:COG4717 122 EKLLQ----LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 721 RgngyKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKA 800
Cdd:COG4717 198 A----EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 801 DTPGKTLIRQ---------LRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQI 871
Cdd:COG4717 274 TIAGVLFLVLgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 872 EENEEELGELMKKYSATVKQLNTEQINV-SEAEF-KLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSK-RLELR 948
Cdd:COG4717 354 REAEELEEELQLEELEQEIAALLAEAGVeDEEELrAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEeELEEE 433
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 24647351 949 TKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQ 995
Cdd:COG4717 434 LEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEE 480
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
402-869 |
1.21e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 402 IREEDDELSELTVDLAEERSTAHIATERLEaETAERL--------KLEKELGDQTNKVKNLQETTEKLEMELICAKSDLN 473
Cdd:PRK03918 205 VLREINEISSELPELREELEKLEKEVKELE-ELKEEIeelekeleSLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 474 GISEDEDAENEDGVGGGVYKlKYERVARELEFTKRRLHTQH---EHDLEQLVALKKHLEmKLSDAYEEVVEQRQVVGQWK 550
Cdd:PRK03918 284 ELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEIngiEERIKELEEKEERLE-ELKKKLKELEKRLEELEERH 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 551 RKAQKMTNEMNDLRML--------LEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERygREKDVLQAEKFTLEQT 622
Cdd:PRK03918 362 ELYEEAKAKKEELERLkkrltgltPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE--LKKAIEELKKAKGKCP 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 623 LADTRLDLEFKEEKLASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKL--RLEMTLE 700
Cdd:PRK03918 440 VCGRELTEEHRKELLEEYTAELKRI------EKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQlkELEEKLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 701 TMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHE---ERTLLLREKHELERRLSSMEDR-DRVDRDAEEALNQK 776
Cdd:PRK03918 514 KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKElEELGFESVEELEER 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 777 LRRDLRKYKAL--LKDAQTQLERLkadtpgKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDES--HRARND 852
Cdd:PRK03918 594 LKELEPFYNEYleLKDAEKELERE------EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEeyEELREE 667
|
490
....*....|....*..
gi 24647351 853 AEERANAAHRDRAELQA 869
Cdd:PRK03918 668 YLELSRELAGLRAELEE 684
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
518-871 |
1.21e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 518 LEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEmndlrmlLEEQNARNNLLEKKQRKFDAECQSLQDAVRQ 597
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK-------IGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 598 ERQAKERYGREKDVLQAEkftleqtladtrldLEFKEEKLASLQRELEEMtfgggteeeFAQLRRSK-NETERRAKEQEE 676
Cdd:TIGR02169 749 LEQEIENVKSELKELEAR--------------IEELEEDLHKLEEALNDL---------EARLSHSRiPEIQAELSKLEE 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 677 ELDEMAGQIQLLEQAKLRLEMTLETMRKEaRRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRL 756
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKE-IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 757 SSME-DRDRVDRDAEEALN--QKLRRDLRKYKALLKDAQTQLERLKADTpgKTLIRQLRNQLEDAESARSLAmKARQTAE 833
Cdd:TIGR02169 885 GDLKkERDELEAQLRELERkiEELEAQIEKKRKRLSELKAKLEALEEEL--SEIEDPKGEDEEIPEEELSLE-DVQAELQ 961
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 24647351 834 AELTEVQAM----------FDESHRARNDAEERANAAHRDRAELQAQI 871
Cdd:TIGR02169 962 RVEEEIRALepvnmlaiqeYEEVLKRLDELKEKRAKLEEERKAILERI 1009
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
435-1039 |
2.19e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 2.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 435 AERLKLEKELgDQTNKVKNLQETTEKlemELICAKSDLNGISEDEDAENEDGVGGGVYKLKYERVARELEFTKRRLHTQh 514
Cdd:PRK03918 176 RRIERLEKFI-KRTENIEELIKEKEK---ELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESL- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 515 EHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKrKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDA 594
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 595 VRQERQAKERygrekdvlqaekftleqtladtrldLEFKEEKLASLQRELEEMTfggGTEEEFAQLRRSKNETER-RAKE 673
Cdd:PRK03918 330 IKELEEKEER-------------------------LEELKKKLKELEKRLEELE---ERHELYEEAKAKKEELERlKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 674 QEEELDEMAGQIQLLEQAKLRLE---MTLETMRKEARRESQQRDEELEEVRGngyKKIKALECQLE-TEHEERTLLLREK 749
Cdd:PRK03918 382 TGLTPEKLEKELEELEKAKEEIEeeiSKITARIGELKKEIKELKKAIEELKK---AKGKCPVCGRElTEEHRKELLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 750 HELERRLSSMEDRDRVDRDAEEALnQKLRRDLRKYKALLKDAQT--QLERLKADTpGKTLIRQLRNQLEDAESARSLAMK 827
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKLRKEL-RELEKVLKKESELIKLKELaeQLKELEEKL-KKYNLEELEKKAEEYEKLKEKLIK 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 828 AR---QTAEAELTEVQAMFDES---HRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKY--------------SA 887
Cdd:PRK03918 537 LKgeiKSLKKELEKLEELKKKLaelEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFyneylelkdaekelER 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 888 TVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENlgdpsmammsKRLELRTKELESRLELEQATRARLE 967
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY----------EELREEYLELSRELAGLRAELEELE 686
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24647351 968 VQVNRHKEALEKLQNEVTQSKMREMQAQDvIKKSQKSLRDMREEFhavssREQESLTRRKDLeKKVEQMESE 1039
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERVEELREKV-----KKYKALLKERAL-SKVGEIASE 751
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
621-843 |
3.09e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 3.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 621 QTLADTRLDLEFKEEKLASLQRELEemtfgggTEEEFAQLRRSKNETER-----RAKEQEEELDEMAGQIQLLEQAKLRL 695
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEPIRE-------LAERYAAARERLAELEYlraalRLWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 696 EMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQ 775
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA 387
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24647351 776 KLRRDLRKYKALLKDAQTQLERLKAD-TPGKTLIRQLRNQLEDAESARS------LAMKARQTAEAELTEVQAMF 843
Cdd:COG4913 388 EAAALLEALEEELEALEEALAEAEAAlRDLRRELRELEAEIASLERRKSniparlLALRDALAEALGLDEAELPF 462
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
518-1053 |
3.81e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 3.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 518 LEQLVALKKHLEmKLSDAYEEVVEQRQvvgqwkrkaQkmtnemndlRMLLEEQNARNNLLEKKQRKFDaECQSLQDAVR- 596
Cdd:COG4913 224 FEAADALVEHFD-DLERAHEALEDARE---------Q---------IELLEPIRELAERYAAARERLA-ELEYLRAALRl 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 597 -QERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEmtFGGGTEEefaQLRRSKNETERRAKEQE 675
Cdd:COG4913 284 wFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG--NGGDRLE---QLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 676 EELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALEcQLETEHEErtlLLREKHELERR 755
Cdd:COG4913 359 RRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALR-DLRRELRE---LEAEIASLERR 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 756 LSSMEDR-----------------------------------------------------DRVDRDAEEALNQ-KLRRDL 781
Cdd:COG4913 435 KSNIPARllalrdalaealgldeaelpfvgelievrpeeerwrgaiervlggfaltllvpPEHYAAALRWVNRlHLRGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 782 RKYKALLKDAQTQLERLKADT-PGKTLIRQ------LRNQLED------AESARSLAMKARQ-TAEAELTEVQAMF---D 844
Cdd:COG4913 515 VYERVRTGLPDPERPRLDPDSlAGKLDFKPhpfrawLEAELGRrfdyvcVDSPEELRRHPRAiTRAGQVKGNGTRHekdD 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 845 ESHRARN-----DAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQiNVSEAEFKLNEMEAernnLKEQ 919
Cdd:COG4913 595 RRRIRSRyvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-RLAEYSWDEIDVAS----AERE 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 920 VAELQHRLDNVENlGDPSMAMMSKRLElrtkELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIK 999
Cdd:COG4913 670 IAELEAELERLDA-SSDDLAALEEQLE----ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 24647351 1000 KSQKSLRDmrEEFHAVSSREQESLTRRkDLEKKVEQMESEGAALKNDLRLALQR 1053
Cdd:COG4913 745 LELRALLE--ERFAAALGDAVERELRE-NLEERIDALRARLNRAEEELERAMRA 795
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
568-1047 |
4.74e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 57.49 E-value: 4.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 568 EEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKErygrEKDVLQaekftlEQTLADTRLDLEFKE--EKLASLQRELE 645
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCE----EKNALQ------EQLQAETELCAEAEEmrARLAARKQELE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 646 EMTFG-----GGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEv 720
Cdd:pfam01576 75 EILHElesrlEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKE- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 721 RGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVD---RDAEEALNQKLRRDLRKYKALLKDAQTQLER 797
Cdd:pfam01576 154 RKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEekgRQELEKAKRKLEGESTDLQEQIAELQAQIAE 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 798 LKADTPGK-TLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEER-------------------- 856
Cdd:pfam01576 234 LRAQLAKKeEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQrrdlgeelealkteledtld 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 857 -ANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLN----------TEQINVSEaEFKLN------EMEAERNNLKEQ 919
Cdd:pfam01576 314 tTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRqkhtqaleelTEQLEQAK-RNKANlekakqALESENAELQAE 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 920 VAELQHRLDNVENlgdpsmamMSKRLELRTKELESRleLEQATRARLEVQvnrhkEALEKLQNEVTQSKMREMQAQDVIK 999
Cdd:pfam01576 393 LRTLQQAKQDSEH--------KRKKLEGQLQELQAR--LSESERQRAELA-----EKLSKLQSELESVSSLLNEAEGKNI 457
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 24647351 1000 KSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDL 1047
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQL 505
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
476-1059 |
6.07e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.29 E-value: 6.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 476 SEDEDAENEDGVGGGVYKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEM--------KLSDAYEEVVEQRQVVG 547
Cdd:pfam02463 151 KPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQakkaleyyQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 548 QWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYG---REKDVLQAEKFTLEQTLA 624
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKllaKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 625 DTRLDLEFKEEKLASLQRELEEMTFGGG---TEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLET 701
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEeleKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 702 MRKEARRESQQRDE-------ELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELER----RLSSMEDRDRVDRDAE 770
Cdd:pfam02463 391 KLKEEELELKSEEEkeaqlllELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKeeleKQELKLLKDELELKKS 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 771 EALNQKLR-RDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQ------AMF 843
Cdd:pfam02463 471 EDLLKETQlVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYkvaistAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 844 DESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVK----QLNTEQINVSEAEFKLNEMEAERNNLKEQ 919
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLeidpILNLAQLDKATLEADEDDKRAKVVEGILK 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 920 VAELQHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIK 999
Cdd:pfam02463 631 DTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKE 710
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24647351 1000 KSQKSLRDMREEFHAVSSREQE-SLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQ 1059
Cdd:pfam02463 711 ELKKLKLEAEELLADRVQEAQDkINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSL 771
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
417-920 |
6.46e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 6.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 417 AEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEmELICAKSDLNGISEDEDAENEdgvgggVYKLKY 496
Cdd:PTZ00121 1280 ADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE-EAKKKADAAKKKAEEAKKAAE------AAKAEA 1352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 497 ERVARELEFTKRRlhtqhehdlEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNL 576
Cdd:PTZ00121 1353 EAAADEAEAAEEK---------AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 577 LEKKQRKFDAEcqSLQDAVRQERQAKERYGREKDVLQAEKFtleqtladtrldlefkeEKLASLQRELEEMtfgggteEE 656
Cdd:PTZ00121 1424 KKKAEEKKKAD--EAKKKAEEAKKADEAKKKAEEAKKAEEA-----------------KKKAEEAKKADEA-------KK 1477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 657 FAQLRRSKNETERRAKEQEEELDEMAGQiqllEQAKLRLEmtlETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLE 736
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKA----AEAKKKAD---EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 737 TEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLE 816
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 817 DAESARSLAMKA----RQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQL 892
Cdd:PTZ00121 1631 EKKKVEQLKKKEaeekKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
|
490 500
....*....|....*....|....*...
gi 24647351 893 NTEQINVSEaefKLNEMEAERNNLKEQV 920
Cdd:PTZ00121 1711 EAEEKKKAE---ELKKAEEENKIKAEEA 1735
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
402-1012 |
9.83e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.45 E-value: 9.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 402 IREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKE---LGDQTNKVKNLQETTEKLEMELICAKSDLNGISED 478
Cdd:PRK01156 192 LKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDynnLKSALNELSSLEDMKNRYESEIKTAESDLSMELEK 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 479 EDAENEdgvgggvYKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSD--AYEEVVEQRQVVGQWKRKAQKM 556
Cdd:PRK01156 272 NNYYKE-------LEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEinKYHAIIKKLSVLQKDYNDYIKK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 557 TNEMNDLRMLLEEQnarnnllekkqRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEkftLEQTLADTRLDLEFKEEK 636
Cdd:PRK01156 345 KSRYDDLNNQILEL-----------EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAF---ISEILKIQEIDPDAIKKE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 637 LASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEE 716
Cdd:PRK01156 411 LNEINVKLQDI------SSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEK 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 717 LEEVRgngyKKIKALEcqleteheertlllREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYK---ALLKDAQT 793
Cdd:PRK01156 485 IREIE----IEVKDID--------------EKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKikiNELKDKHD 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 794 QLERLKADtpgktlIRQLRnqLEDAESARSLAMKA-RQTAEAELTEVQAMFDESHRARNDAEERANaahrdraELQAQIE 872
Cdd:PRK01156 547 KYEEIKNR------YKSLK--LEDLDSKRTSWLNAlAVISLIDIETNRSRSNEIKKQLNDLESRLQ-------EIEIGFP 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 873 ENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLgdpsmAMMSKRLELRTKEL 952
Cdd:PRK01156 612 DDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEI-----TSRINDIEDNLKKS 686
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 953 ESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKmREMQAQDVIKKSQKSLRDMREEF 1012
Cdd:PRK01156 687 RKALDDAKANRARLESTIEILRTRINELSDRINDIN-ETLESMKKIKKAIGDLKRLREAF 745
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
635-1061 |
1.00e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 635 EKLASLQRELEEMTfggGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLEtmRKEARRESQQRD 714
Cdd:COG4717 71 KELKELEEELKEAE---EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQE--LEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 715 EELEEVRgNGYKKIKALECQLETEHEERTLLlREKHELERRLSSMEDRDRVDRDAEEAlnQKLRRDLRKYKALLKDAQTQ 794
Cdd:COG4717 146 ERLEELE-ERLEELRELEEELEELEAELAEL-QEELEELLEQLSLATEEELQDLAEEL--EELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 795 LERLKADtpgktlIRQLRNQLEDAESARSLAmkaRQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEEN 874
Cdd:COG4717 222 LEELEEE------LEQLENELEAAALEERLK---EARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 875 EEELGELMKKYSATVKQLnTEQINVSEAEFKlNEMEAERNNLKEQVAELQHRLDNVENLgdpsmammsKRLELRTKELES 954
Cdd:COG4717 293 LAREKASLGKEAEELQAL-PALEELEEEELE-ELLAALGLPPDLSPEELLELLDRIEEL---------QELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 955 RLELEQATRARLEVQVNRHKEALEKLQNEVTQSKmREMQAQDVIKKSQKSLRDMREEFHAVSSREQEsltrrKDLEKKVE 1034
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGELEELLEALDE-----EELEEELE 435
|
410 420
....*....|....*....|....*..
gi 24647351 1035 QMESEGAALKNDLRLALQRIADLQQAM 1061
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAEL 462
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
605-931 |
1.44e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 605 YGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMtfgggteEEFAQLRRSKNETE-----RRAKEQEEELD 679
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA-------ERYQALLKEKREYEgyellKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 680 EMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 759
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 760 EDRDR---VDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADtpgktlIRQLRNQLEDAESARSLAMKARQTAEAEL 836
Cdd:TIGR02169 321 EERLAkleAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE------LEDLRAELEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 837 TEVQAMFDESHRARNDAEERANAAHRDRAELQAQIeeneEELGELMKKYSATVKQLNTEqinVSEAEFKLNEMEAERNNL 916
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAI----AGIEAKINELEEEKEDKALE---IKKQEWKLEQLAADLSKY 467
|
330
....*....|....*
gi 24647351 917 KEQVAELQHRLDNVE 931
Cdd:TIGR02169 468 EQELYDLKEEYDRVE 482
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
400-707 |
1.47e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 400 RTIREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELicakSDLNgiseDE 479
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL----TLLN----EE 818
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 480 DAENEDGVGGgvyklkYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEmKLSDAYEEVVEQRQVVGQWKRKAQKmtnE 559
Cdd:TIGR02168 819 AANLRERLES------LERRIAATERRLEDLEEQIEELSEDIESLAAEIE-ELEELIEELESELEALLNERASLEE---A 888
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 560 MNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERygrekdvLQAEKFTLEQTLA-DTRLDLEFKEEKLA 638
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG-------LEVRIDNLQERLSeEYSLTLEEAEALEN 961
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24647351 639 SLQRELEEmtfgggTEEEFAQLRRSKNE-------TERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEAR 707
Cdd:TIGR02168 962 KIEDDEEE------ARRRLKRLENKIKElgpvnlaAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREAR 1031
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
634-984 |
2.90e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 634 EEKLASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMR---KEARRES 710
Cdd:TIGR02169 673 PAELQRLRERLEGL------KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKerlEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 711 QQRDEELEEVRgngyKKIKALECQLETEHEErtlllreKHELERRLSSMEDRDRVDRDAE-EALNQKLRRDLRKYKALLK 789
Cdd:TIGR02169 747 SSLEQEIENVK----SELKELEARIEELEED-------LHKLEEALNDLEARLSHSRIPEiQAELSKLEEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 790 DAQTQLERLKADTP-GKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQ 868
Cdd:TIGR02169 816 EIEQKLNRLTLEKEyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 869 AQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAE------LQHRLDNVE----NLGDPSM 938
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelsledVQAELQRVEeeirALEPVNM 975
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 24647351 939 AMMS--KRLELRTKELESRLELEQATRARLEVQVNRhkeaLEKLQNEV 984
Cdd:TIGR02169 976 LAIQeyEEVLKRLDELKEKRAKLEEERKAILERIEE----YEKKKREV 1019
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
604-920 |
4.87e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.19 E-value: 4.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 604 RYGREK--DVLQAEKFTLEQTLADTRLDLEfkeeKLASLQRELEE-------MTFGGGTEEEFAQLRRSKNETER----- 669
Cdd:COG3096 780 RAAREKrlEELRAERDELAEQYAKASFDVQ----KLQRLHQAFSQfvgghlaVAFAPDPEAELAALRQRRSELERelaqh 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 670 RAKEQE--EELDEMAGQIQLLE----QAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGyKKIKALECQLETeheert 743
Cdd:COG3096 856 RAQEQQlrQQLDQLKEQLQLLNkllpQANLLADETLADRLEELREELDAAQEAQAFIQQHG-KALAQLEPLVAV------ 928
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 744 llLR---EKHE-LERRLSSMEDRDRVDRDAEEALNQKLRRdlRKYKALlKDAQTQLERlkadtpGKTLIRQLRNQLEDAE 819
Cdd:COG3096 929 --LQsdpEQFEqLQADYLQAKEQQRRLKQQIFALSEVVQR--RPHFSY-EDAVGLLGE------NSDLNEKLRARLEQAE 997
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 820 SARS---LAMKARQTAEAELTEVQAMFDESHRARND-------------------AEERanaAHRDRAELQAQIEENEEe 877
Cdd:COG3096 998 EARRearEQLRQAQAQYSQYNQVLASLKSSRDAKQQtlqeleqeleelgvqadaeAEER---ARIRRDELHEELSQNRS- 1073
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 24647351 878 lgelmkKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQV 920
Cdd:COG3096 1074 ------RRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQV 1110
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
633-887 |
5.02e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 5.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 633 KEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEarresqq 712
Cdd:COG4942 25 AEAELEQLQQEIAE------LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 713 rdeeleevrgngykkIKALECQLEteheertlllREKHELERRLSSMEDRDRVDRDAE----EALNQKLRRdLRKYKALL 788
Cdd:COG4942 92 ---------------IAELRAELE----------AQKEELAELLRALYRLGRQPPLALllspEDFLDAVRR-LQYLKYLA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 789 KDAQTQLERLKADTPG-KTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAEL 867
Cdd:COG4942 146 PARREQAEELRADLAElAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
250 260
....*....|....*....|
gi 24647351 868 QAQIEENEEELGELMKKYSA 887
Cdd:COG4942 226 EALIARLEAEAAAAAERTPA 245
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
633-1011 |
6.10e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 54.19 E-value: 6.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 633 KEEKLASLQRELEEMtfgggtEEEFAQLRRSKNETErRAKEQEEELdeMAGQIQLLEQAKLRLEMtletmrKEARRESQQ 712
Cdd:PRK04863 784 REKRIEQLRAEREEL------AERYATLSFDVQKLQ-RLHQAFSRF--IGSHLAVAFEADPEAEL------RQLNRRRVE 848
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 713 RDEELEEVRGN------GYKKIKALeCQLETEHEERTLLLREKHELERrlsSMEDRDRVDRdAEEAlnqklRRDLRKYKA 786
Cdd:PRK04863 849 LERALADHESQeqqqrsQLEQAKEG-LSALNRLLPRLNLLADETLADR---VEEIREQLDE-AEEA-----KRFVQQHGN 918
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 787 LLKDAQTQLERLKADtPGKtlIRQLRNQLEDAESARSLAmKARQTAEAELTEVQAmfdesHRARNDAEERANAAhrdrAE 866
Cdd:PRK04863 919 ALAQLEPIVSVLQSD-PEQ--FEQLKQDYQQAQQTQRDA-KQQAFALTEVVQRRA-----HFSYEDAAEMLAKN----SD 985
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 867 LQAQIEENEEELGELMKKYSatvKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDnveNLGDPSMAMMSKRLE 946
Cdd:PRK04863 986 LNEKLRQRLEQAEQERTRAR---EQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQ---DLGVPADSGAEERAR 1059
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24647351 947 LRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEvtqskmremqaqdvIKKSQKSLRDMREE 1011
Cdd:PRK04863 1060 ARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKK--------------LRKLERDYHEMREQ 1110
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
788-1018 |
6.82e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 6.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 788 LKDAQTQLERLKADtpgktlIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAEL 867
Cdd:COG4942 22 AAEAEAELEQLQQE------IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 868 QAQIEENEEELGELMKKYSATVKQLNTEQI----NVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLgdpsmammSK 943
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLlspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL--------RA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24647351 944 RLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSR 1018
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
668-1103 |
1.09e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 668 ERRAKEQEEELDEMAGQIQLLEQAKL--RLEmTLETMRKEARRESqqrdEELEEVRGNGYKKIKALECQLEtEHEERtll 745
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEEKDLheRLN-GLESELAELDEEI----ERYEEQREQARETRDEADEVLE-EHEER--- 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 746 LREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAESArsla 825
Cdd:PRK02224 250 REELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEE---- 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 826 mkARQTAEAELTEVQAMFDESHRARNDA---EERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQ------ 896
Cdd:PRK02224 326 --LRDRLEECRVAAQAHNEEAESLREDAddlEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRerfgda 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 897 -INVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVEN--------------------LGDPSMAMMSKRLELRTKELESR 955
Cdd:PRK02224 404 pVDLGNAEDFLEELREERDELREREAELEATLRTARErveeaealleagkcpecgqpVEGSPHVETIEEDRERVEELEAE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 956 LELEQATRARLEVQVNRhKEALEKLQNEVTQSKMREmqaqdviKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQ 1035
Cdd:PRK02224 484 LEDLEEEVEEVEERLER-AEDLVEAEDRIERLEERR-------EDLEELIAERRETIEEKRERAEELRERAAELEAEAEE 555
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24647351 1036 MESEGAALKNDLRLALQRIADLQQAMeEEGEEELSESDESLSSVGSISDLEDRLRPVHVKRSSQQSLN 1103
Cdd:PRK02224 556 KREAAAEAEEEAEEAREEVAELNSKL-AELKERIESLERIRTLLAAIADAEDEIERLREKREALAELN 622
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
579-821 |
1.23e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 579 KKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELeemtfgggteeefA 658
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL-------------A 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 659 QLRRSKNETERRAKEQEEELDEMAGQIQLL-EQAKLRLEMTLETMRKEARRE------SQQRDEELEEVRGNgYKKIKAL 731
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYRLgRQPPLALLLSPEDFLDAVRRLqylkylAPARREQAEELRAD-LAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 732 ECQLETEHEERTLLLREKHELERRLSSmedrdrvDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKAdtpgktLIRQL 811
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEA-------LKAERQKLLARLEKELAELAAELAELQQEAEELEA------LIARL 232
|
250
....*....|
gi 24647351 812 RNQLEDAESA 821
Cdd:COG4942 233 EAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
379-870 |
1.67e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 379 DRESSVATISLTTGDNDDDDDRtIREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETT 458
Cdd:PRK02224 294 ERDDLLAEAGLDDADAEAVEAR-REELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESEL 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 459 EKLEMELICAKSDLNGIsEDEDAENEDGVGGGVYKLkyERVARELEftkrrlhtQHEHDLEQLVALKKHLEMKLSDAYEE 538
Cdd:PRK02224 373 EEAREAVEDRREEIEEL-EEEIEELRERFGDAPVDL--GNAEDFLE--------ELREERDELREREAELEATLRTARER 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 539 VVEQRQVVGQWK-------RKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDV 611
Cdd:PRK02224 442 VEEAEALLEAGKcpecgqpVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDL 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 612 lqaekftlEQTLADTRLDLEFKEEKLASLQRELEEmtfgggteeefaqLRRSKNETERRAKEQEEELDEMAGQIQLLEQA 691
Cdd:PRK02224 522 --------EELIAERRETIEEKRERAEELRERAAE-------------LEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 692 KLRLEMTLETMRKeaRRESQQRDEELEEVRGNGYKKIKALEcQLETEHEERtllLREKHELERRLSSMEDRDRVdrdaEE 771
Cdd:PRK02224 581 LAELKERIESLER--IRTLLAAIADAEDEIERLREKREALA-ELNDERRER---LAEKRERKRELEAEFDEARI----EE 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 772 ALNQKLRRDlrKYKALLKDAQTQLERLKADTPGKtlIRQLRNQLEDAESARslamKARQTAEAELTEVQAMFDEshrarn 851
Cdd:PRK02224 651 AREDKERAE--EYLEQVEEKLDELREERDDLQAE--IGAVENELEELEELR----ERREALENRVEALEALYDE------ 716
|
490
....*....|....*....
gi 24647351 852 dAEERANAAHRDRAELQAQ 870
Cdd:PRK02224 717 -AEELESMYGDLRAELRQR 734
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
493-1048 |
1.99e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 1.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 493 KLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLE-----MKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLL 567
Cdd:TIGR00618 244 YLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEetqerINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSR 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 568 EEQNARNNLLEKKQRKFDAECQSLQDAVRQE---RQAKERYGREKDVLQAEKfTLEQTLADTRLDLEFKEEKLASLQREL 644
Cdd:TIGR00618 324 AKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEihiRDAHEVATSIREISCQQH-TLTQHIHTLQQQKTTLTQKLQSLCKEL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 645 EEMTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAklrlEMTLETMRKEARRESQQRDEELEEVRGNg 724
Cdd:TIGR00618 403 DILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITC----TAQCEKLEKIHLQESAQSLKEREQQLQT- 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 725 YKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLK-------DAQTQLER 797
Cdd:TIGR00618 478 KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETseedvyhQLTSERKQ 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 798 LKADTPGKTLIRQ-------LRNQL-EDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERAN-----AAHRDR 864
Cdd:TIGR00618 558 RASLKEQMQEIQQsfsiltqCDNRSkEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDlqdvrLHLQQC 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 865 AELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLK---------EQVAELQHRLDNVENLGD 935
Cdd:TIGR00618 638 SQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEqltywkemlAQCQTLLRELETHIEEYD 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 936 PSMAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQN----EVTQSKMREMQAQDVIKKSQKSLRDMREE 1011
Cdd:TIGR00618 718 REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFnnneEVTAALQTGAELSHLAAEIQFFNRLREED 797
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 24647351 1012 FHAVSSREQESLTRRKD----LEKKVEQMESEGAALKNDLR 1048
Cdd:TIGR00618 798 THLLKTLEAEIGQEIPSdediLNLQCETLVQEEEQFLSRLE 838
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
853-1099 |
2.62e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 853 AEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVEn 932
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 933 lgdpsmammsKRLELRTKELESRLeleqatrARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEF 1012
Cdd:COG4942 97 ----------AELEAQKEELAELL-------RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 1013 HAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQAMEEEGEEELSESDESLSSVGSISDLEDRLRPV 1092
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
....*..
gi 24647351 1093 HVKRSSQ 1099
Cdd:COG4942 240 AERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
824-1045 |
2.64e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 824 LAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAE 903
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 904 FKLNEMEAERNNLKEQVAEL---------QHRLDNVENLGDPS-MAMMSKRLELRTKELESRLELEQATRARLEVQVNRH 973
Cdd:COG4942 90 KEIAELRAELEAQKEELAELlralyrlgrQPPLALLLSPEDFLdAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24647351 974 KEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKN 1045
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
560-721 |
2.66e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.92 E-value: 2.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 560 MNDLRMLLEEQN--ARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKL 637
Cdd:COG1579 3 PEDLRALLDLQEldSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 638 ASL--QRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDE 715
Cdd:COG1579 83 GNVrnNKEYEAL------QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
|
....*.
gi 24647351 716 ELEEVR 721
Cdd:COG1579 157 ELEELE 162
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
570-1056 |
2.78e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.88 E-value: 2.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 570 QNARNNLLEkkqRKFDAEcQSLQDAVRQ---ERQAKERYGREKDVLQAEKFTLEQTL--ADTRLDLEF----KEEKLASL 640
Cdd:COG3096 277 ANERRELSE---RALELR-RELFGARRQlaeEQYRLVEMARELEELSARESDLEQDYqaASDHLNLVQtalrQQEKIERY 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 641 QRELEEMTFGGGTEEE-FAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAklrLEMtLETmRKEARRESQQRDEELEE 719
Cdd:COG3096 353 QEDLEELTERLEEQEEvVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA---LDV-QQT-RAIQYQQAVQALEKARA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 720 VRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSsmedrdrvdrDAEEALNQklrrdLRKYKALLKDAQTQLERLK 799
Cdd:COG3096 428 LCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLS----------VADAARRQ-----FEKAYELVCKIAGEVERSQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 800 ADTPGKTLIRQLRNQledaesaRSLAMKArQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQaqieeneeelg 879
Cdd:COG3096 493 AWQTARELLRRYRSQ-------QALAQRL-QQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAE----------- 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 880 elmkkysatvkQLNTEQinvSEAEFKLNEMEAERNNLKEQVAELQHRLDNVEnlgdpsmammSKRLELRTKELesrlele 959
Cdd:COG3096 554 -----------ELEELL---AELEAQLEELEEQAAEAVEQRSELRQQLEQLR----------ARIKELAARAP------- 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 960 qatrARLEVQvnrhkEALEKLQNEVTQSKmreMQAQDVIKKSQKSLRDMREefhaVSSREQESLTRRKDLEKKVEQMESE 1039
Cdd:COG3096 603 ----AWLAAQ-----DALERLREQSGEAL---ADSQEVTAAMQQLLERERE----ATVERDELAARKQALESQIERLSQP 666
|
490
....*....|....*..
gi 24647351 1040 GAAlkNDLRlaLQRIAD 1056
Cdd:COG3096 667 GGA--EDPR--LLALAE 679
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
400-783 |
2.91e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 2.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 400 RTIREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDE 479
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 480 DAENEDGVGGGvyklkyervARELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNE 559
Cdd:COG1196 501 ADYEGFLEGVK---------AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 560 MNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERygrekdvlQAEKFTLEQTLADTRLD--LEFKEEKL 637
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY--------VLGDTLLGRTLVAARLEaaLRRAVTLA 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 638 ASLQRELEEMTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKlrlemtletmrKEARRESQQRDEEL 717
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA-----------LLAEEEEERELAEA 712
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24647351 718 EEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRK 783
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
770-1090 |
3.85e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 3.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 770 EEALNQ--KLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAEsARSLAMKARQtAEAELTEVQAMFDESH 847
Cdd:TIGR02168 175 KETERKleRTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELE-LALLVLRLEE-LREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 848 RARNDAEERANAAHRDRAELQAQIEENEeelgelmKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRL 927
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELRLEVSELE-------EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 928 DNVEnlgdpsmammSKRLELRTKELESRLELEQatrarLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRD 1007
Cdd:TIGR02168 326 EELE----------SKLDELAEELAELEEKLEE-----LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 1008 MREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALknDLRLALQRIADLQQAMEEEGEEELSESDESLSSVGSISDLED 1087
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEEL--LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
...
gi 24647351 1088 RLR 1090
Cdd:TIGR02168 469 ELE 471
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
586-805 |
6.11e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 6.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 586 AECQSLQDAVRQERQAKERygrEKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKN 665
Cdd:COG4942 23 AEAEAELEQLQQEIAELEK---ELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA------LEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 666 ETERRAKEQEEELDEMAGQIQLLEQAK-----------LRLEMTLETM------RKEARRESQQRDEELEEVRGNGYKKI 728
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPplalllspedfLDAVRRLQYLkylapaRREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24647351 729 KALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGK 805
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAA 250
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
401-984 |
9.21e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 9.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 401 TIREEDDELSELTVDLAEerstahiaTERLEAETAERlklekelgdqtnkVKNLQETTEKLEmelicaksdlngiSEDED 480
Cdd:PRK02224 252 ELETLEAEIEDLRETIAE--------TEREREELAEE-------------VRDLRERLEELE-------------EERDD 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 481 AENEDGVGGGvyklkyervareleftkrrlhtqhehDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEM 560
Cdd:PRK02224 298 LLAEAGLDDA--------------------------DAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 561 NDlrmlLEEQNARnnlLEKKQRKFDAECQSLQDAVRQERQAKERygrekdvLQAEKFTLEQTLADTRLDLEFKEEKLASL 640
Cdd:PRK02224 352 DD----LEERAEE---LREEAAELESELEEAREAVEDRREEIEE-------LEEEIEELRERFGDAPVDLGNAEDFLEEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 641 QRELEEmtfgggTEEEFAQLRRSKNETERRAKEQEEELD-----------EMAGQIQLLEQAKLRLEmTLETMRKEARRE 709
Cdd:PRK02224 418 REERDE------LREREAELEATLRTARERVEEAEALLEagkcpecgqpvEGSPHVETIEEDRERVE-ELEAELEDLEEE 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 710 SQQRDEELEEVrgngyKKIKALECQLETEHEERTLLlrEKHELERRLSSMEDRDRVD--RDAEEALNQKLRRDLRKYKAL 787
Cdd:PRK02224 491 VEEVEERLERA-----EDLVEAEDRIERLEERREDL--EELIAERRETIEEKRERAEelRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 788 LKDAQTQLERLKADTPGKTLIRQLRNQLEDAESARSLAMKARQTAEaELTEVQAMFDEshraRNDAEERANAAHRDR-AE 866
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIE-RLREKREALAE----LNDERRERLAEKRERkRE 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 867 LQAQIEENEEELGELMKkysatvKQLNTEQINVSEaefKLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKRLE 946
Cdd:PRK02224 639 LEAEFDEARIEEAREDK------ERAEEYLEQVEE---KLDELREERDDLQAEIGAVENELEELEELRERREALENRVEA 709
|
570 580 590
....*....|....*....|....*....|....*....
gi 24647351 947 LRTkeLESRLELEQATRARLEVQV-NRHKEALEKLQNEV 984
Cdd:PRK02224 710 LEA--LYDEAEELESMYGDLRAELrQRNVETLERMLNET 746
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
519-1020 |
1.09e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 519 EQLVALKKHLEMKL-------SDAYEEVVEQRQV-VGQWKRKAQKMTNEMNDLRMLLE--EQNARN-NLLEKKQRkfdAE 587
Cdd:pfam15921 245 DQLEALKSESQNKIelllqqhQDRIEQLISEHEVeITGLTEKASSARSQANSIQSQLEiiQEQARNqNSMYMRQL---SD 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 588 CQSLQDAVRQE-RQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLRRSKNE 666
Cdd:pfam15921 322 LESTVSQLRSElREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 667 TE-RRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEvRGNGYKKIKALECQLETEHEertLL 745
Cdd:pfam15921 402 RLwDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQG-KNESLEKVSSLTAQLESTKE---ML 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 746 LREKHELERRLSSMEDRDRVDRDAEEALNQKLR-----------------------RDLRKYKALLKDAQTQLERLKADT 802
Cdd:pfam15921 478 RKVVEELTAKKMTLESSERTVSDLTASLQEKERaieatnaeitklrsrvdlklqelQHLKNEGDHLRNVQTECEALKLQM 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 803 PGK-TLIRQLRNQLEDAESarsLAMKARQTAEAELTEvQAMFDESHRARndaeeranaahrdRAELQaQIEENEEELGEL 881
Cdd:pfam15921 558 AEKdKVIEILRQQIENMTQ---LVGQHGRTAGAMQVE-KAQLEKEINDR-------------RLELQ-EFKILKDKKDAK 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 882 MKKYSATVKQLNTEQINV----SEAEFKLNEMEAERNNLKEQVAELQHRLDNvenlgdpsmamMSKRLELRTKELESRLE 957
Cdd:pfam15921 620 IRELEARVSDLELEKVKLvnagSERLRAVKDIKQERDQLLNEVKTSRNELNS-----------LSEDYEVLKRNFRNKSE 688
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24647351 958 LEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQ 1020
Cdd:pfam15921 689 EMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQ 751
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
578-892 |
1.13e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 578 EKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLE--QTLADTRLDLEFKEEKLASLQRELEEMTFGGGtee 655
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSD--- 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 656 EFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKE----ARRESQQRDEELEEVRGN--GYKKIK 729
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRleaaEDLARLELRALLEERFAAalGDAVER 765
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 730 ALECQLETEHE-ERTLLLREKHELERRLSS-----MEDRDRVDRDAEealnqklrrDLRKYKALLKDAQTQ-LERLKADt 802
Cdd:COG4913 766 ELRENLEERIDaLRARLNRAEEELERAMRAfnrewPAETADLDADLE---------SLPEYLALLDRLEEDgLPEYEER- 835
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 803 pgktlIRQLRNQLEDAESAR--SLAMKARQTAEAELTEVQAM-----FDESHRARNDAEERANAAHRD-RAELQAQIEEN 874
Cdd:COG4913 836 -----FKELLNENSIEFVADllSKLRRAIREIKERIDPLNDSlkripFGPGRYLRLEARPRPDPEVREfRQELRAVTSGA 910
|
330
....*....|....*...
gi 24647351 875 EEELGELMKKYSATVKQL 892
Cdd:COG4913 911 SLFDEELSEARFAALKRL 928
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
706-933 |
1.17e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 706 ARRESQQRDEELEEVRgngyKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRdrvDRDAEEALNQkLRRDLRKYK 785
Cdd:COG4942 18 QADAAAEAEAELEQLQ----QEIAELEKELAALKKEEKALLKQLAALERRIAALARR---IRALEQELAA-LEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 786 ALLKDAQTQLERLKADtpgktLIRQLRnQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARndaEERANAAHRDRA 865
Cdd:COG4942 90 KEIAELRAELEAQKEE-----LAELLR-ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR---REQAEELRADLA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24647351 866 ELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENL 933
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
407-838 |
1.74e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 407 DELSELTVDLAEERSTahiaTERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMelicAKSDLNGISEDEDAENEdg 486
Cdd:COG4717 71 KELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELEKLEK----LLQLLPLYQELEALEAE-- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 487 vgggvyklkYERVARELEFTKRRLHtQHEHDLEQLVALKKHLEMKlsdayeevveQRQVVGQWKRKAQKMTNEMNDLRML 566
Cdd:COG4717 141 ---------LAELPERLEELEERLE-ELRELEEELEELEAELAEL----------QEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 567 LEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLeqtLADTRLDLEFKEEKLASLQRELEE 646
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL---IAAALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 647 MTF--GGGTEEEFAQLRRSKNETERRAKE----------QEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRD 714
Cdd:COG4717 278 VLFlvLGLLALLFLLLAREKASLGKEAEElqalpaleelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 715 EELEEVRGNGY-KKIKAL--ECQLETEHE--ERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQK-----LRRDLRKY 784
Cdd:COG4717 358 ELEEELQLEELeQEIAALlaEAGVEDEEElrAALEQAEEYQELKEELEELEEQLEELLGELEELLEAldeeeLEEELEEL 437
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 24647351 785 KALLKDAQTQLERLKADtpgktlIRQLRNQLEDAESARSL--AMKARQTAEAELTE 838
Cdd:COG4717 438 EEELEELEEELEELREE------LAELEAELEQLEEDGELaeLLQELEELKAELRE 487
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
496-983 |
1.90e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 496 YERVARELEFTKRRLHTqhehdLEQLVALKKHLEmKLSDAYEEVVEQRQVVGQWK--RKAQKMTNEMNDLRMLLEEQNAR 573
Cdd:COG4913 237 LERAHEALEDAREQIEL-----LEPIRELAERYA-AARERLAELEYLRAALRLWFaqRRLELLEAELEELRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 574 NNLLEKKQRKFDAECQSLQDAVRQ-ERQAKERYGREKDVLQAEKFT-------LEQTLADTRLDLEFKEEKLASLQRELE 645
Cdd:COG4913 311 LERLEARLDALREELDELEAQIRGnGGDRLEQLEREIERLERELEErerrrarLEALLAALGLPLPASAEEFAALRAEAA 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 646 EmtFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDE------ELEE 719
Cdd:COG4913 391 A--LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAelpfvgELIE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 720 VRG----------------------------------NGYK--------KIKALECQLETEHEERTLLLRE--------- 748
Cdd:COG4913 469 VRPeeerwrgaiervlggfaltllvppehyaaalrwvNRLHlrgrlvyeRVRTGLPDPERPRLDPDSLAGKldfkphpfr 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 749 ---KHELERRLS------------------------------SMEDRDRVDR------DAEEALN------QKLRRDLRK 783
Cdd:COG4913 549 awlEAELGRRFDyvcvdspeelrrhpraitragqvkgngtrhEKDDRRRIRSryvlgfDNRAKLAaleaelAELEEELAE 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 784 YKALLKDAQTQLERLKADtpgKTLIRQLRNQLEDAESARSLAMKARQTAE---------AELTEVQAMFDESHRARNDAE 854
Cdd:COG4913 629 AEERLEALEAELDALQER---REALQRLAEYSWDEIDVASAEREIAELEAelerldassDDLAALEEQLEELEAELEELE 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 855 ERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEA----ERNNLKEQVAELQHRLDNV 930
Cdd:COG4913 706 EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAvereLRENLEERIDALRARLNRA 785
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 24647351 931 ENLGDPSMAMMSKRLELRTKELESRLELEQATRARLEVQVN----RHKEALEKLQNE 983
Cdd:COG4913 786 EEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEdglpEYEERFKELLNE 842
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
371-928 |
2.94e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 371 SRGNSVARDRESSVATISLTTGDNDDDDDRTIREEDDELSELTVDLAEERSTAHIATERLEAE-----------TAERLK 439
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQlvlanselteaRTERDQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 440 LEKELGDQTNKVKNLQETTEKLEMELICAKSDlNGISEDEDAENEdgvgggvykLKYERVARELEftkrrlhtQHEHDLE 519
Cdd:pfam15921 368 FSQESGNLDDQLQKLLADLHKREKELSLEKEQ-NKRLWDRDTGNS---------ITIDHLRRELD--------DRNMEVQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 520 QLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMND----LRMLLEEQNARNNLLEKKQRKFDAECQSLQDav 595
Cdd:pfam15921 430 RLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLEStkemLRKVVEELTAKKMTLESSERTVSDLTASLQE-- 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 596 rqerqaKERygrekdvlQAEKFTLEQTLADTRLDLEFKEekLASLQRELEEMTFGGGTEEEFAQLRRSKNETERRAKEQE 675
Cdd:pfam15921 508 ------KER--------AIEATNAEITKLRSRVDLKLQE--LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQI 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 676 EELDEMAGQ------IQLLEQAKLRLEMTLETM----------RKEAR-RESQQR--DEELEEVR--GNGYKKIKALEcq 734
Cdd:pfam15921 572 ENMTQLVGQhgrtagAMQVEKAQLEKEINDRRLelqefkilkdKKDAKiRELEARvsDLELEKVKlvNAGSERLRAVK-- 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 735 leTEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLErlkadtpgktlirQLRNQ 814
Cdd:pfam15921 650 --DIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELE-------------QTRNT 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 815 LEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQieeneeelgelMKKYSATVKQLNT 894
Cdd:pfam15921 715 LKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEE-----------KNKLSQELSTVAT 783
|
570 580 590
....*....|....*....|....*....|....
gi 24647351 895 EQinvSEAEFKLNEMEAERNNLKEQVAELQHRLD 928
Cdd:pfam15921 784 EK---NKMAGELEVLRSQERRLKEKVANMEVALD 814
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
512-1049 |
3.25e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 512 TQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKK-QRKFDAECQS 590
Cdd:pfam05483 250 TEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDlQIATKTICQL 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 591 LQDA---VRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASL-------QRELEEMT-FGGGTEEEFAQ 659
Cdd:pfam05483 330 TEEKeaqMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIItmelqkkSSELEEMTkFKNNKEVELEE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 660 LRRSKNETERRAKEQEEeLDEMAGQIQLLEQaklRLEMTLETMRKEARRESQQRdEELEEVRGNGYKKIKALECQLETEH 739
Cdd:pfam05483 410 LKKILAEDEKLLDEKKQ-FEKIAEELKGKEQ---ELIFLLQAREKEIHDLEIQL-TAIKTSEEHYLKEVEDLKTELEKEK 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 740 EERTLLLREKHELerrlsSMEDRDRVDRDAEEALnqklrrDLRKYKALLKDAQTQLER-LKADTPGKTLIRQLRNQLE-- 816
Cdd:pfam05483 485 LKNIELTAHCDKL-----LLENKELTQEASDMTL------ELKKHQEDIINCKKQEERmLKQIENLEEKEMNLRDELEsv 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 817 --DAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNT 894
Cdd:pfam05483 554 reEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNA 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 895 EQInvseaefKLNEMEAERNNLKEQVAELqhrLDNVENlgdpsmammskrlELRTKELESRLELEQATRARLEVQvnrhk 974
Cdd:pfam05483 634 YEI-------KVNKLELELASAKQKFEEI---IDNYQK-------------EIEDKKISEEKLLEEVEKAKAIAD----- 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 975 EALeKLQNEV---TQSKMREMQAQDVIKKSQ--KSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRL 1049
Cdd:pfam05483 686 EAV-KLQKEIdkrCQHKIAEMVALMEKHKHQydKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEI 764
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
566-839 |
3.91e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.58 E-value: 3.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 566 LLEEQNARNNLLekkqRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELE 645
Cdd:pfam07888 36 LEECLQERAELL----QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 646 EMTfgggteEEFAQLRRSKNETERRAKEQEEEldemagqIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVrgngy 725
Cdd:pfam07888 112 ELS------EEKDALLAQRAAHEARIRELEED-------IKTLTQRVLERETELERMKERAKKAGAQRKEEEAER----- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 726 kkiKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRK---YKALLKDAQTQLERLKADT 802
Cdd:pfam07888 174 ---KQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKeaeNEALLEELRSLQERLNASE 250
|
250 260 270
....*....|....*....|....*....|....*..
gi 24647351 803 PGKTLirqLRNQLEDAESARSLAMKARQTAEAELTEV 839
Cdd:pfam07888 251 RKVEG---LGEELSSMAAQRDRTQAELHQARLQAAQL 284
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
555-1045 |
3.93e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 3.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 555 KMTNEMNDLRMLLEEqnarnnlLEKKQRKFDAECQSLQ---DAVRQERQAKE-------RYGREKDVLQAEKFTLEQTLA 624
Cdd:TIGR04523 156 KLNNKYNDLKKQKEE-------LENELNLLEKEKLNIQkniDKIKNKLLKLElllsnlkKKIQKNKSLESQISELKKQNN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 625 DTRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRK 704
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTTEISN------TQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 705 EArreSQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSME-DRDRVDRDAEEALNQ--KLRRDL 781
Cdd:TIGR04523 303 QK---EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSEsENSEKQRELEEKQNEieKLKKEN 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 782 RKYKALLKDAQTQLERLKADTPG-KTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAA 860
Cdd:TIGR04523 380 QSYKQEIKNLESQINDLESKIQNqEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 861 HRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLgdpsmam 940
Cdd:TIGR04523 460 DNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESE------- 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 941 mSKRLELRTKELESRLEL--EQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFhAVSSR 1018
Cdd:TIGR04523 533 -KKEKESKISDLEDELNKddFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI-EEKEK 610
|
490 500
....*....|....*....|....*...
gi 24647351 1019 EQESLTRR-KDLEKKVEQMESEGAALKN 1045
Cdd:TIGR04523 611 KISSLEKElEKAKKENEKLSSIIKNIKS 638
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
608-850 |
4.23e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 608 EKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQL 687
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA------LERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 688 LEQAKLRLEMTLETMRKEARRESQQRDEEL--------EEVRGNGYKK--IKALECQLETEHEERTLLLREKHELERRls 757
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALllspedflDAVRRLQYLKylAPARREQAEELRADLAELAALRAELEAE-- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 758 smedrdrvdRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTpgKTLIRQLRNQLEDAESARSLAMKARQTAEAELT 837
Cdd:COG4942 173 ---------RAELEALLAELEEERAALEALKAERQKLLARLEKEL--AELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
250
....*....|...
gi 24647351 838 EVQAMFDESHRAR 850
Cdd:COG4942 242 RTPAAGFAALKGK 254
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
610-929 |
4.84e-05 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 47.38 E-value: 4.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 610 DVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMTfggGTEEEFAQLRRSKN---ETERRAKEQE----------E 676
Cdd:pfam05622 69 EQLQEENFRLETARDDYRIKCEELEKEVLELQHRNEELT---SLAEEAQALKDEMDilrESSDKVKKLEatvetykkklE 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 677 ELDEMAGQIQLLE-------QAKLRLE----------MTLETMRKEARRESQQRDEELeevrgngyKKIKALECQLETEH 739
Cdd:pfam05622 146 DLGDLRRQVKLLEernaeymQRTLQLEeelkkanalrGQLETYKRQVQELHGKLSEES--------KKADKLEFEYKKLE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 740 EERTLLLREKhelerrlssmeDRDRVDRDAEEALNQKLR------RDLRKYKALLKDAQTQLERLKADT-PGKTLIRQLR 812
Cdd:pfam05622 218 EKLEALQKEK-----------ERLIIERDTLRETNEELRcaqlqqAELSQADALLSPSSDPGDNLAAEImPAEIREKLIR 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 813 NQLEDaesaRSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKY--SATVK 890
Cdd:pfam05622 287 LQHEN----KMLRLGQEGSYRERLTELQQLLEDANRRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAedSSLLK 362
|
330 340 350
....*....|....*....|....*....|....*....
gi 24647351 891 QLNTEQINvseaefKLNEMEAERNNLKEQVAELQHRLDN 929
Cdd:pfam05622 363 QKLEEHLE------KLHEAQSELQKKKEQIEELEPKQDS 395
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
649-798 |
6.10e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 47.01 E-value: 6.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 649 FGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEE----LEEVRGNG 724
Cdd:PRK12705 17 LLGVLVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEErlvqKEEQLDAR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 725 YKKIKALECQLETehEERTLLLREKhELERRLSSMEDR-DRVDRDAEEALNQKLRRDLRK---------YKALLKDAQTQ 794
Cdd:PRK12705 97 AEKLDNLENQLEE--REKALSAREL-ELEELEKQLDNElYRVAGLTPEQARKLLLKLLDAeleeekaqrVKKIEEEADLE 173
|
....
gi 24647351 795 LERL 798
Cdd:PRK12705 174 AERK 177
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
417-1041 |
8.07e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 8.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 417 AEERSTAHIATERleAETAERLKlEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDGVGGGVYKLKY 496
Cdd:PTZ00121 1111 AEEARKAEEAKKK--AEDARKAE-EARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEV 1187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 497 ERVA--RELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMndlrmLLEEQNARN 574
Cdd:PTZ00121 1188 RKAEelRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEE-----IRKFEEARM 1262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 575 NLLEKKQRKFDAECQSLQDAVR--QERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMTFGGG 652
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKADELKkaEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 653 TEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALE 732
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE 1422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 733 CQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEAlnQKLRRDLRKYKALLKDAQtqlERLKADTPGKTlirqlr 812
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA--KKKAEEAKKADEAKKKAE---EAKKADEAKKK------ 1491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 813 nqledAESARSLAMKARQTAEAELTEVQAMFDESHRarnDAEERANAAHRDRAElqaqieeneEELGELMKKYSATVKQl 892
Cdd:PTZ00121 1492 -----AEEAKKKADEAKKAAEAKKKADEAKKAEEAK---KADEAKKAEEAKKAD---------EAKKAEEKKKADELKK- 1553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 893 nTEQINVSEAEFKLNEM--EAERNNLKEQVAELQHRLDnvenlgdpsmammSKRLELRTK--ELESRLELEQATRA---- 964
Cdd:PTZ00121 1554 -AEELKKAEEKKKAEEAkkAEEDKNMALRKAEEAKKAE-------------EARIEEVMKlyEEEKKMKAEEAKKAeeak 1619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 965 ------RLEVQVNRHKEALEKLQNEVTQ--SKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQM 1036
Cdd:PTZ00121 1620 ikaeelKKAEEEKKKVEQLKKKEAEEKKkaEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
|
....*
gi 24647351 1037 ESEGA 1041
Cdd:PTZ00121 1700 EAKKA 1704
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
616-835 |
1.10e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 616 KFTLEQTLADTRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKN--ETERRAKEQEEELDEMAGQIQLLEQAKL 693
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEE------AEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 694 RLEMTLETMRKEARRESQQRDEELEEVRGNGYK-KIKALECQLET-------EHEERTLLLREKHELERRLSSMEDRDRV 765
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQQLRaQLAELEAELAElsarytpNHPDVIALRAQIAALRAQLQQEAQRILA 316
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 766 DRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADtpgktlIRQLRNQLEDAESARSLAMKARQTAEAE 835
Cdd:COG3206 317 SLEAELEALQAREASLQAQLAQLEARLAELPELEAE------LRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
404-858 |
1.12e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 404 EEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAEN 483
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 484 EDGVGggvyKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDL 563
Cdd:PTZ00121 1521 AKKAD----EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 564 RMLLEEQNARnnlLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTladtRLDLEFKEEKLASLQRE 643
Cdd:PTZ00121 1597 VMKLYEEEKK---MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL----KKAEEENKIKAAEEAKK 1669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 644 LEEmtfgggtEEEFAQLRRSKNETERRakeQEEELDEMAGQIQLLEQAKLRLEmtlETMRK--EARRESQQRDEELEEVR 721
Cdd:PTZ00121 1670 AEE-------DKKKAEEAKKAEEDEKK---AAEALKKEAEEAKKAEELKKKEA---EEKKKaeELKKAEEENKIKAEEAK 1736
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 722 GNGYKKIKALEcQLETEHEERTLLLREKHELERRlsSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKAD 801
Cdd:PTZ00121 1737 KEAEEDKKKAE-EAKKDEEEKKKIAHLKKEEEKK--AEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEG 1813
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 24647351 802 TPGKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEvQAMFDESHRARNDAEERAN 858
Cdd:PTZ00121 1814 GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE-KHKFNKNNENGEDGNKEAD 1869
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
634-1090 |
1.23e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 634 EEKLASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEmagqIQLLEQAKLRLEMTL---ETMRKEARRES 710
Cdd:PRK02224 212 ESELAELDEEIERY------EEQREQARETRDEADEVLEEHEERREE----LETLEAEIEDLRETIaetEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 711 QQRDEELEEVRgngyKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDR-DAEEALNQ--KLRRDLRKYKAL 787
Cdd:PRK02224 282 RDLRERLEELE----EERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRvAAQAHNEEaeSLREDADDLEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 788 LKDAQTQLERLKADtpgktlIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAEL 867
Cdd:PRK02224 358 AEELREEAAELESE------LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 868 QAQIEENEEELGELMKKYSA----TVKQLNTEQINV---SEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLgdPSMAM 940
Cdd:PRK02224 432 EATLRTARERVEEAEALLEAgkcpECGQPVEGSPHVetiEEDRERVEELEAELEDLEEEVEEVEERLERAEDL--VEAED 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 941 MSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKL------QNEVTQSKMREMQA-----------QDVIKKSQK 1003
Cdd:PRK02224 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELeaeaeeKREAAAEAEEEAEEareevaelnskLAELKERIE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 1004 SLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKN------------------DLRLALQRIADLQQAMEEEG 1065
Cdd:PRK02224 590 SLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEkrerkreleaefdearieEAREDKERAEEYLEQVEEKL 669
|
490 500
....*....|....*....|....*
gi 24647351 1066 EEELSESDESLSSVGSISDLEDRLR 1090
Cdd:PRK02224 670 DELREERDDLQAEIGAVENELEELE 694
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
489-696 |
2.49e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 489 GGVYKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRmLLE 568
Cdd:COG4717 289 LFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ-LEE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 569 EQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERY-------------------GREKDVLQAEKFTLEQTLADTRLD 629
Cdd:COG4717 368 LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELeeleeqleellgeleelleALDEEELEEELEELEEELEELEEE 447
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24647351 630 LEFKEEKLASLQRELEEMtfggGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLE 696
Cdd:COG4717 448 LEELREELAELEAELEQL----EEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
516-1034 |
2.55e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.20 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 516 HDLEQLVALKKHLEMKLSDAYEEVVEQRQV-----------VGQWKRKAQKMTNEMNDLRMLLEEQNARNN--------- 575
Cdd:pfam10174 250 RDLEDEVQMLKTNGLLHTEDREEEIKQMEVykshskfmknkIDQLKQELSKKESELLALQTKLETLTNQNSdckqhievl 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 576 ---LLEKKQRKfdAECQSLQDAVRQERQAKERYGREKDV----LQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMt 648
Cdd:pfam10174 330 kesLTAKEQRA--AILQTEVDALRLRLEEKESFLNKKTKqlqdLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENL- 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 649 fgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRgngyKKI 728
Cdd:pfam10174 407 -----QEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLK----KEN 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 729 KALECQLETEH----EERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKlRRDLRKYKALLKDAQTQLERLKADTPG 804
Cdd:pfam10174 478 KDLKEKVSALQpeltEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQK-KEECSKLENQLKKAHNAEEAVRTNPEI 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 805 KTLIRQLRNqledaesarslamkarqtaeaeltEVQAMFDESHRARNDAEERANAahrdraelqaqieeneeelgelmkk 884
Cdd:pfam10174 557 NDRIRLLEQ------------------------EVARYKEESGKAQAEVERLLGI------------------------- 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 885 ysatvkqlnteqinvseaefkLNEMEAERNNLKEQVAELQHRLD--------NVENLGDPSMAMMSKRLELRTkelESRL 956
Cdd:pfam10174 588 ---------------------LREVENEKNDKDKKIAELESLTLrqmkeqnkKVANIKHGQQEMKKKGAQLLE---EARR 643
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24647351 957 ELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEfhavssreqesltRRKDLEKKVE 1034
Cdd:pfam10174 644 REDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAE-------------RRKQLEEILE 708
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
436-988 |
3.03e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 436 ERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDaenedgvgggvyKLKYERVARELEFTkrrlhtqhe 515
Cdd:TIGR04523 146 EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID------------KIKNKLLKLELLLS--------- 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 516 hDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMND----LRMLLEEQNARNNLLEKKQRKFDAECQSL 591
Cdd:TIGR04523 205 -NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNtqtqLNQLKDEQNKIKKQLSEKQKELEQNNKKI 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 592 QDAVRQERQAKErygrEKDVLQAEKftLEQTLADTRLDLEFKEEKLASLQRELEEMTFG-GGTEEEFAQLRRSKNETERR 670
Cdd:TIGR04523 284 KELEKQLNQLKS----EISDLNNQK--EQDWNKELKSELKNQEKKLEEIQNQISQNNKIiSQLNEQISQLKKELTNSESE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 671 AKEQEEELDEMAGQIQLLE---QAKLRLEMTLETMRKEARRESQQRDEELEEVRgngyKKIKALECQLETEHEERTLLLR 747
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKkenQSYKQEIKNLESQINDLESKIQNQEKLNQQKD----EQIKKLQQEKELLEKEIERLKE 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 748 EKHELERRLSSMEDRDRVDRDAEEALNQK---LRRDLRKYKALLKDAQTQLERLKADTPGKT--------LIRQLRNQLE 816
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKELIIKNLDNTresLETQLKVLSRSINKIKQNLEQKQKELKSKEkelkklneEKKELEEKVK 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 817 DAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANaahrdRAELQAQIeeneEELGELMKKYSATVKQLNTEQ 896
Cdd:TIGR04523 514 DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELK-----KENLEKEI----DEKNKEIEELKQTQKSLKKKQ 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 897 invSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENlgdpsmammskrlELRTKELESRleleqatraRLEVQVNRHKEA 976
Cdd:TIGR04523 585 ---EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEK-------------ELEKAKKENE---------KLSSIIKNIKSK 639
|
570
....*....|..
gi 24647351 977 LEKLQNEVTQSK 988
Cdd:TIGR04523 640 KNKLKQEVKQIK 651
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
668-858 |
3.42e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 668 ERRAKEQEEELDEMAGQIqlLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLEtEHEERtlllr 747
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRI--LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLL-QKEEN----- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 748 ekheLERRLSSMEDRDRVDRDAEEALNQKLrRDLRK----YKALLKDAQTQLERLKADTpgktlirqlrnqledAESARS 823
Cdd:PRK12704 98 ----LDRKLELLEKREEELEKKEKELEQKQ-QELEKkeeeLEELIEEQLQELERISGLT---------------AEEAKE 157
|
170 180 190
....*....|....*....|....*....|....*..
gi 24647351 824 LAMKarqTAEAEL-TEVQAMFDESH-RARNDAEERAN 858
Cdd:PRK12704 158 ILLE---KVEEEArHEAAVLIKEIEeEAKEEADKKAK 191
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
555-859 |
3.56e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 44.29 E-value: 3.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 555 KMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKE 634
Cdd:pfam19220 38 AILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKT 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 635 EKLASLQRELE-EMTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQqR 713
Cdd:pfam19220 118 AQAEALERQLAaETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTR-R 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 714 DEELEEVRGNGYKKIKALECQLETEHEERTlllREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRkykaLLKDAQT 793
Cdd:pfam19220 197 LAELETQLDATRARLRALEGQLAAEQAERE---RAEAQLEEAVEAHRAERASLRMKLEALTARAAATEQ----LLAEARN 269
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24647351 794 QLERLKADtpgktlIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANA 859
Cdd:pfam19220 270 QLRDRDEA------IRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEERAEM 329
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
551-960 |
3.96e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.43 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 551 RKAQKMTNEMNDLRMLLEEQNArnnLLEKKQRKfdaecqsLQDavrqerqakerygrekdvLQAEKFTLEQTLADTRLDL 630
Cdd:pfam10174 338 QRAAILQTEVDALRLRLEEKES---FLNKKTKQ-------LQD------------------LTEEKSTLAGEIRDLKDML 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 631 EFKEEKLASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRES 710
Cdd:pfam10174 390 DVKERKINVLQKKIENL------QEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRERED 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 711 QQRDEELEEVRgngyKKIKALECQLETEH----EERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKlRRDLRKYKA 786
Cdd:pfam10174 464 RERLEELESLK----KENKDLKEKVSALQpeltEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQK-KEECSKLEN 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 787 LLKDAQTQLERLKADTPGKTLIRQLrnqleDAESARSLAMKARQTAEAE-----LTEVQAMFDESHRARNDAEERANAAH 861
Cdd:pfam10174 539 QLKKAHNAEEAVRTNPEINDRIRLL-----EQEVARYKEESGKAQAEVErllgiLREVENEKNDKDKKIAELESLTLRQM 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 862 RDRAELQAQIeeneEELGELMKKYSATVKQL---NTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGDPSM 938
Cdd:pfam10174 614 KEQNKKVANI----KHGQQEMKKKGAQLLEEarrREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKD 689
|
410 420
....*....|....*....|..
gi 24647351 939 AMMSKRLELRTKELESRLELEQ 960
Cdd:pfam10174 690 GHLTNLRAERRKQLEEILEMKQ 711
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
400-1041 |
4.02e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 400 RTIREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKN-LQETTEKLEMELICAKSDLNGISED 478
Cdd:TIGR00606 440 RTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNsLTETLKKEVKSLQNEKADLDRKLRK 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 479 EDAENEDGVGGGVYKLKYERVARELEFTKRRLHTQHEHDLEQLVAL------KKHLEMKLSDAYEEVVEQRQVVGQWKRK 552
Cdd:TIGR00606 520 LDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKE 599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 553 AQKMTNEMNDLRMLLEEQNARNNLLEKKQrkFDA-ECQSLQDAVRQERQAKERYGREKDVLQA---------EKFTLEQT 622
Cdd:TIGR00606 600 LASLEQNKNHINNELESKEEQLSSYEDKL--FDVcGSQDEESDLERLKEEIEKSSKQRAMLAGatavysqfiTQLTDENQ 677
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 623 LADTRLDLEFKEEK-LASLQRELEEMTFGGGTEEEfaqlrrsknETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLet 701
Cdd:TIGR00606 678 SCCPVCQRVFQTEAeLQEFISDLQSKLRLAPDKLK---------STESELKKKEKRRDEMLGLAPGRQSIIDLKEKEI-- 746
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 702 mrKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLL---------REKHELERR---LSSMEDRDRVDRDA 769
Cdd:TIGR00606 747 --PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimerfqMELKDVERKiaqQAAKLQGSDLDRTV 824
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 770 EEaLNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAESARSLAMKARQTAEAEL----TEVQAMFDE 845
Cdd:TIGR00606 825 QQ-VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLvelsTEVQSLIRE 903
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 846 SHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNE--------MEAERNNLK 917
Cdd:TIGR00606 904 IKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgkddylkqKETELNTVN 983
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 918 EQVAELQHRLDNVENlgdpsmAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQskMREMQAQDV 997
Cdd:TIGR00606 984 AQLEECEKHQEKINE------DMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQ--MQVLQMKQE 1055
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 24647351 998 IKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGA 1041
Cdd:TIGR00606 1056 HQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDA 1099
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
598-871 |
4.36e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 4.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 598 ERQAKERYGR-EKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQR------ELEEMTFGGGTEEEFAQLRRSKNETERR 670
Cdd:pfam17380 286 ERQQQEKFEKmEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRqaaiyaEQERMAMERERELERIRQEERKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 671 akeQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKH 750
Cdd:pfam17380 366 ---RQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 751 ELERRLSSMEDRDRVDRDAEEALNQKlrRDLRKYKALLKDAQtQLERLKADTPGKTLIRQlrnQLEDAESARSLAMKARQ 830
Cdd:pfam17380 443 ERAREMERVRLEEQERQQQVERLRQQ--EEERKRKKLELEKE-KRDRKRAEEQRRKILEK---ELEERKQAMIEEERKRK 516
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 24647351 831 TAEAELTEVQ-AMFDESHRARNDAEERANAAHRDRAELQAQI 871
Cdd:pfam17380 517 LLEKEMEERQkAIYEEERRREAEEERRKQQEMEERRRIQEQM 558
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
598-761 |
5.47e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 5.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 598 ERQAKERYGREK---DVLQAEkfTLEQTLADTRLDLEFKEEKLASLQRELEEmtfgggteEEFAQLRRSKNETERRAKEQ 674
Cdd:COG2433 356 EKKVPPDVDRDEvkaRVIRGL--SIEEALEELIEKELPEEEPEAEREKEHEE--------RELTEEEEEIRRLEEQVERL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 675 EEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESqQRDEELEEVRgngyKKIKALECQLETEHEERtlllrekHELER 754
Cdd:COG2433 426 EAEVEELEAELEEKDERIERLERELSEARSEERREI-RKDREISRLD----REIERLERELEEERERI-------EELKR 493
|
....*..
gi 24647351 755 RLSSMED 761
Cdd:COG2433 494 KLERLKE 500
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
727-964 |
8.22e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 727 KIKALECQLETEHEERTLllreKHELERRLSSMEDRDRVDRDAEEalnqkLRRDLRKYKALLKDAQTQLERLKADTP--- 803
Cdd:PRK11281 44 QLDALNKQKLLEAEDKLV----QQDLEQTLALLDKIDRQKEETEQ-----LKQQLAQAPAKLRQAQAELEALKDDNDeet 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 804 ----GKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAmfdeshrarndAEERANAAHRDRAELQAQIEENEEELG 879
Cdd:PRK11281 115 retlSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQT-----------QPERAQAALYANSQRLQQIRNLLKGGK 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 880 ELMKKYSATVK-QLNTEQINVsEAEFKLNEMEAERNN------------LKEQVAELQHRLDNVENLGDpsmammSKRLE 946
Cdd:PRK11281 184 VGGKALRPSQRvLLQAEQALL-NAQNDLQRKSLEGNTqlqdllqkqrdyLTARIQRLEHQLQLLQEAIN------SKRLT 256
|
250
....*....|....*...
gi 24647351 947 LRTKELESRLELEQATRA 964
Cdd:PRK11281 257 LSEKTVQEAQSQDEAARI 274
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
620-917 |
8.98e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 8.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 620 EQTLADTRLDLEFKEEKLASLQRELEEM-----------------TFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMA 682
Cdd:PRK04863 785 EKRIEQLRAEREELAERYATLSFDVQKLqrlhqafsrfigshlavAFEADPEAELRQLNRRRVELERALADHESQEQQQR 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 683 GQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEvrgngyKKIKALECQLETEHEERTLllrekHELERRLSSM--- 759
Cdd:PRK04863 865 SQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIRE------QLDEAEEAKRFVQQHGNAL-----AQLEPIVSVLqsd 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 760 -EDRDRVDRDAEEAlnQKLRRDLRKYKALLKDAQTQLERLK-ADTPGKT-----LIRQLRNQLEDAESARSLAMKARQTA 832
Cdd:PRK04863 934 pEQFEQLKQDYQQA--QQTQRDAKQQAFALTEVVQRRAHFSyEDAAEMLaknsdLNEKLRQRLEQAEQERTRAREQLRQA 1011
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 833 EAELTE---VQAMFDESHRARND-------------------AEERAnAAHRDraELQAQIEENEEELGELMKKYSATVK 890
Cdd:PRK04863 1012 QAQLAQynqVLASLKSSYDAKRQmlqelkqelqdlgvpadsgAEERA-RARRD--ELHARLSANRSRRNQLEKQLTFCEA 1088
|
330 340
....*....|....*....|....*..
gi 24647351 891 QLNTEQINVSEAEFKLNEMEAERNNLK 917
Cdd:PRK04863 1089 EMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
570-926 |
9.21e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 9.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 570 QNARNNLLEK--KQRKFDAECQSLQDAvrqERQAKERYGREKDVLQAEKFTLEQTL--ADTRLDL----EFKEEKLASLQ 641
Cdd:PRK04863 278 ANERRVHLEEalELRRELYTSRRQLAA---EQYRLVEMARELAELNEAESDLEQDYqaASDHLNLvqtaLRQQEKIERYQ 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 642 RELEEMTFGGGTEEEFAQLRRS-KNETERRAKEQEEELDEMAGQIQLLEQAklrLEMtLETmRKEARRESQQRDEELEEV 720
Cdd:PRK04863 355 ADLEELEERLEEQNEVVEEADEqQEENEARAEAAEEEVDELKSQLADYQQA---LDV-QQT-RAIQYQQAVQALERAKQL 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 721 RGN---GYKKIKALECQLETEHEERTLLLREkheLERRLSSMED-RDRVDR------------DAEEALN--QKLRRDLR 782
Cdd:PRK04863 430 CGLpdlTADNAEDWLEEFQAKEQEATEELLS---LEQKLSVAQAaHSQFEQayqlvrkiagevSRSEAWDvaRELLRRLR 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 783 KYKALlkDAQTQLERLKAdtpgKTLIRQLRNQLEDAESARSLAMKARQTAEAElTEVQAMFDESHRARNDAEERANAAHR 862
Cdd:PRK04863 507 EQRHL--AEQLQQLRMRL----SELEQRLRQQQRAERLLAEFCKRLGKNLDDE-DELEQLQEELEARLESLSESVSEARE 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 863 DRAELQAQIEENEEELGELMKK------YSATVKQLNTE------------------QINVSEAEFKLNEMEAERNNLKE 918
Cdd:PRK04863 580 RRMALRQQLEQLQARIQRLAARapawlaAQDALARLREQsgeefedsqdvteymqqlLERERELTVERDELAARKQALDE 659
|
....*...
gi 24647351 919 QVAELQHR 926
Cdd:PRK04863 660 EIERLSQP 667
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
410-1039 |
9.69e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 9.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 410 SELTVDLAEERSTAHIATERLEAETA--------ERLKLEKELGDQTNKVKNLQETTE------KLEMELICAKSDLNGI 475
Cdd:TIGR00606 411 AQLCADLQSKERLKQEQADEIRDEKKglgrtielKKEILEKKQEELKFVIKELQQLEGssdrilELDQELRKAERELSKA 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 476 SEDEDAENedgvgggvyKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQK 555
Cdd:TIGR00606 491 EKNSLTET---------LKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDE 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 556 MTNEMND------LRMLLEEQNARNNLLEKKQRKFDAECQSLQdavrqerQAKERYGREKDVLQAEKFTLEQTLADT--- 626
Cdd:TIGR00606 562 LTSLLGYfpnkkqLEDWLHSKSKEINQTRDRLAKLNKELASLE-------QNKNHINNELESKEEQLSSYEDKLFDVcgs 634
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 627 ---RLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLRRSKNETE----RRAKEQEEELDEMAGQIQlleqAKLRLEMT- 698
Cdd:TIGR00606 635 qdeESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCcpvcQRVFQTEAELQEFISDLQ----SKLRLAPDk 710
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 699 LETMRKEARRESQQRDEELEEVRGngykkikalecqletEHEERTLLLREKHELERRLSSmedrdrVDRDAeealnQKLR 778
Cdd:TIGR00606 711 LKSTESELKKKEKRRDEMLGLAPG---------------RQSIIDLKEKEIPELRNKLQK------VNRDI-----QRLK 764
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 779 RDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAESArslamKARQTAEAELTEVQAMFDESHRARNDAEERAN 858
Cdd:TIGR00606 765 NDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERK-----IAQQAAKLQGSDLDRTVQQVNQEKQEKQHELD 839
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 859 AAHRDRAELQAQIEENEEElgelMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGDPsM 938
Cdd:TIGR00606 840 TVVSKIELNRKLIQDQQEQ----IQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP-L 914
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 939 AMMSKRLELRTKELESRLElEQATRARLEVQVNR--------HKEALEKL------------QNEVTQSKMREMQAQDVI 998
Cdd:TIGR00606 915 ETFLEKDQQEKEELISSKE-TSNKKAQDKVNDIKekvknihgYMKDIENKiqdgkddylkqkETELNTVNAQLEECEKHQ 993
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 24647351 999 KKSQKSLRDMREEFHAVSSRE---QESLTRRKdLEKKVEQMESE 1039
Cdd:TIGR00606 994 EKINEDMRLMRQDIDTQKIQErwlQDNLTLRK-RENELKEVEEE 1036
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
628-801 |
9.84e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 9.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 628 LDLEFKEEKLASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEmagqiqlLEQAKLRLEMTLETMRKEAR 707
Cdd:COG1579 10 LDLQELDSELDRLEHRLKEL------PAELAELEDELAALEARLEAAKTELED-------LEKEIKRLELEIEEVEARIK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 708 RESQQrdeeLEEVRGNgyKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKAL 787
Cdd:COG1579 77 KYEEQ----LGNVRNN--KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE 150
|
170
....*....|....
gi 24647351 788 LKDAQTQLERLKAD 801
Cdd:COG1579 151 LAELEAELEELEAE 164
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
747-1060 |
1.43e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 42.36 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 747 REKHELERRLSSMEDRDRVDRDAEEALNQKLR------RDLRKYKALLKDAQTQLERLKADTpgktliRQLRNQLEDAES 820
Cdd:pfam19220 3 QRNELLRVRLGEMADRLEDLRSLKADFSQLIEpieailRELPQAKSRLLELEALLAQERAAY------GKLRRELAGLTR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 821 ARSLAMKARQTAEAELTEVQAMFDESHRA--------------RNDAEERANAAHRDRAELQAQIEENEEELGELMKKYS 886
Cdd:pfam19220 77 RLSAAEGELEELVARLAKLEAALREAEAAkeelrielrdktaqAEALERQLAAETEQNRALEEENKALREEAQAAEKALQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 887 ATVKQLNTEQINVSEAEfklNEMEAERNNLKEQVAE---LQHRLDNVENLGDPSMAmmskrlelRTKELESRLELEQATR 963
Cdd:pfam19220 157 RAEGELATARERLALLE---QENRRLQALSEEQAAElaeLTRRLAELETQLDATRA--------RLRALEGQLAAEQAER 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 964 AR----LEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEqmese 1039
Cdd:pfam19220 226 ERaeaqLEEAVEAHRAERASLRMKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLA----- 300
|
330 340
....*....|....*....|.
gi 24647351 1040 gaALKNDLRLALQRIADLQQA 1060
Cdd:pfam19220 301 --GLEADLERRTQQFQEMQRA 319
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
674-1059 |
1.50e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 674 QEEELDEMAGQIQLLEQAKLRLEMTLETMRK---------------------------EARRESQQRDEELEEVRGNgyk 726
Cdd:pfam01576 3 QEEEMQAKEEELQKVKERQQKAESELKELEKkhqqlceeknalqeqlqaetelcaeaeEMRARLAARKQELEEILHE--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 727 kikaLECQLETEHEERTLLLREKHELERRLSSMEDRdrvdRDAEEALNQKLRRD-------LRKYKA---LLKDAQTQLE 796
Cdd:pfam01576 80 ----LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQ----LDEEEAARQKLQLEkvtteakIKKLEEdilLLEDQNSKLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 797 RLKADTPGKtlIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEE-------RANAAHRDRAELQA 869
Cdd:pfam01576 152 KERKLLEER--ISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKakrklegESTDLQEQIAELQA 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 870 QIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAernnlkeQVAELQHRLDN---VENLGDPSMAMMSKRLE 946
Cdd:pfam01576 230 QIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEA-------QISELQEDLESeraARNKAEKQRRDLGEELE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 947 LRTKELESRLE---LEQATRARLEVQVNRHKEALEKlqnevtQSKMREMQAQDVIKKSQKSLRDMREEFhavssreqESL 1023
Cdd:pfam01576 303 ALKTELEDTLDttaAQQELRSKREQEVTELKKALEE------ETRSHEAQLQEMRQKHTQALEELTEQL--------EQA 368
|
410 420 430
....*....|....*....|....*....|....*..
gi 24647351 1024 TRRK-DLEKKVEQMESEGAALKNDLRLALQRIADLQQ 1059
Cdd:pfam01576 369 KRNKaNLEKAKQALESENAELQAELRTLQQAKQDSEH 405
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
625-1044 |
1.65e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 625 DTRLDLEFKEEKlaSLQRELEEMTFGGGTEEEFAQLRRSKNETERRAKE----------QEEELDEMAGQIQLLEQAKLR 694
Cdd:PTZ00121 1086 DNRADEATEEAF--GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEarkaedarkaEEARKAEDAKRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 695 LEMTLETMRKEARR-ESQQRDEEL---EEVRGNgyKKIKALECQLETEHEERTLLLReKHELERRLSSMEDRDRVDRDAE 770
Cdd:PTZ00121 1164 RKAEEARKAEDAKKaEAARKAEEVrkaEELRKA--EDARKAEAARKAEEERKAEEAR-KAEDAKKAEAVKKAEEAKKDAE 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 771 EALNQKLRRDLRKYKALLKDAQTQLERLKADTpgKTLIRQLRNQLEDAESARSlAMKARQTAEAELTEVQAMFDESHRAR 850
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAI--KAEEARKADELKKAEEKKK-ADEAKKAEEKKKADEAKKKAEEAKKA 1317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 851 NDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQhrldNV 930
Cdd:PTZ00121 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK----KA 1393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 931 ENLGDPSMAMMSKRLELRTKELESRleleQATRARLEVQVNRHKEALEKLQNEvtqskmrEMQAQDVIKKSQKSLRDMRE 1010
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAAAKK----KADEAKKKAEEKKKADEAKKKAEE-------AKKADEAKKKAEEAKKAEEA 1462
|
410 420 430
....*....|....*....|....*....|....
gi 24647351 1011 EFHAVSSREQESLTRRKDLEKKVEQMESEGAALK 1044
Cdd:PTZ00121 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
426-647 |
1.79e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 426 ATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGIsEDEDAENEDGVgggvyklkyERVARELEF 505
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL-EQELAALEAEL---------AELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 506 TKRRLHTQHEHDLEQLVALKKHLEMklsdAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFD 585
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQ----PPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24647351 586 AECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEM 647
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
493-977 |
2.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 493 KLKYERVARELEFTKRRLhTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQvvgqwkRKAQKMTNEMNDLRMLLEEQNA 572
Cdd:COG4913 280 ALRLWFAQRRLELLEAEL-EELRAELARLEAELERLEARLDALREELDELEA------QIRGNGGDRLEQLEREIERLER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 573 RNNLLEKKQRKFDAECQSL-----------QDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQ 641
Cdd:COG4913 353 ELEERERRRARLEALLAALglplpasaeefAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 642 R----------------------ELEEMTFGG-----GTEEE-----------------------FAQLRRSKNET---- 667
Cdd:COG4913 433 RrksniparllalrdalaealglDEAELPFVGelievRPEEErwrgaiervlggfaltllvppehYAAALRWVNRLhlrg 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 668 --------ERRAKEQEEELDE--MAGQI------------QLLEQ----------AKLRLE---MTLETMRKE--ARRES 710
Cdd:COG4913 513 rlvyervrTGLPDPERPRLDPdsLAGKLdfkphpfrawleAELGRrfdyvcvdspEELRRHpraITRAGQVKGngTRHEK 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 711 QQRDEELEE-VRG-NGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLrrDLRKYKALL 788
Cdd:COG4913 593 DDRRRIRSRyVLGfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI--DVASAEREI 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 789 KDAQTQLERLKADTPG----KTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDR 864
Cdd:COG4913 671 AELEAELERLDASSDDlaalEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 865 AELQAQIEENEEELGELMKKYSATVKQLNTeqinvseaefklnEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKR 944
Cdd:COG4913 751 LEERFAAALGDAVERELRENLEERIDALRA-------------RLNRAEEELERAMRAFNREWPAETADLDADLESLPEY 817
|
570 580 590
....*....|....*....|....*....|....
gi 24647351 945 LELRTKELESRL-ELEQATRARLEVQVNRHKEAL 977
Cdd:COG4913 818 LALLDRLEEDGLpEYEERFKELLNENSIEFVADL 851
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
620-779 |
2.33e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.00 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 620 EQTLADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLRRSKNETERRAKeQEEELDEMAGQIQLLEQAKLRLEMTL 699
Cdd:PRK12705 36 ERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQ-KEEQLDARAEKLDNLENQLEEREKAL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 700 ETMRKEARRESQQRDEELEEVRGngykkikalecqlETEHEERTLLLRE-----KHELERRLSSMEDR--DRVDRDAEEA 772
Cdd:PRK12705 115 SARELELEELEKQLDNELYRVAG-------------LTPEQARKLLLKLldaelEEEKAQRVKKIEEEadLEAERKAQNI 181
|
....*..
gi 24647351 773 LNQKLRR 779
Cdd:PRK12705 182 LAQAMQR 188
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
716-871 |
2.96e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 716 ELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLR--RDLRKYKALLKDAQT 793
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvRNNKEYEALQKEIES 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24647351 794 qLERLKADTpgKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDEshrARNDAEERANAAHRDRAELQAQI 871
Cdd:COG1579 101 -LKRRISDL--EDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE---ELAELEAELEELEAEREELAAKI 172
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
402-705 |
3.09e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 41.21 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 402 IREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLnGISEDEda 481
Cdd:pfam19220 99 LREAEAAKEELRIELRDKTAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERL-ALLEQE-- 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 482 enedgvGGGVYKLKYERVARELEFTKRrlHTQHEHDLEQLVALKKHLEMKLSdayEEVVEQRQVVGQWKRKAQKMTNEMN 561
Cdd:pfam19220 176 ------NRRLQALSEEQAAELAELTRR--LAELETQLDATRARLRALEGQLA---AEQAERERAEAQLEEAVEAHRAERA 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 562 DLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQ-ERQAKErygrekdvLQAEKFTLEQTLADTRLDLEFKEEKLASL 640
Cdd:pfam19220 245 SLRMKLEALTARAAATEQLLAEARNQLRDRDEAIRAaERRLKE--------ASIERDTLERRLAGLEADLERRTQQFQEM 316
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 641 QR---ELEEM--TFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKE 705
Cdd:pfam19220 317 QRaraELEERaeMLTKALAAKDAALERAEERIASLSDRIAELTKRFEVERAALEQANRRLKEELQRERAE 386
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
591-870 |
3.96e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 3.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 591 LQDAVRQER-QAKERYGREKDVLQAEKFTLEQtlADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLRRSKNETER 669
Cdd:pfam12128 598 SEEELRERLdKAEEALQSAREKQAAAEEQLVQ--ANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAE 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 670 RAKEQEEELDEMAGQIQLLE-QAKLRLEMTLETMRkEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLRE 748
Cdd:pfam12128 676 RKDSANERLNSLEAQLKQLDkKHQAWLEEQKEQKR-EARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALET 754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 749 khELERRLSSME-DRDRVDRDAEE--ALNQKLRRDLRKYKALLKDAQTQLERLKADTPG--------KTLIRQLRNQL-- 815
Cdd:pfam12128 755 --WYKRDLASLGvDPDVIAKLKREirTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRlatqlsniERAISELQQQLar 832
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 24647351 816 --EDAESARSLAMKARQTAEAELTEVqamfDESHRARNDAEERANAAHRDRAELQAQ 870
Cdd:pfam12128 833 liADTKLRRAKLEMERKASEKQQVRL----SENLRGLRCEMSKLATLKEDANSEQAQ 885
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
591-1036 |
4.49e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 591 LQDAVRQERQAKERYGREKDVLQAEKFTLEQTLAD--TRL-DLEFKEEKLASLQRELEEmtfggGTEEEFAQLRRSKNET 667
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDlqTKLqEMQMERDAMADIRRRESQ-----SQEDLRNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 668 ERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMR------KEARRES-----------------------QQRDEELE 718
Cdd:pfam15921 155 EAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRsilvdfEEASGKKiyehdsmstmhfrslgsaiskilRELDTEIS 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 719 EVRGngykKIKALECQLET--------------EHEERTLLLREKHELE-----RRLSSMEDRDRVDRDAEEALNQKLRR 779
Cdd:pfam15921 235 YLKG----RIFPVEDQLEAlksesqnkielllqQHQDRIEQLISEHEVEitgltEKASSARSQANSIQSQLEIIQEQARN 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 780 DLRKYKALLKDAQTQLERLKADtpgktlIRQLRNQLEDA--ESARSLAMKARQTAEAElTEVQAMFDESHRARNDAEERA 857
Cdd:pfam15921 311 QNSMYMRQLSDLESTVSQLRSE------LREAKRMYEDKieELEKQLVLANSELTEAR-TERDQFSQESGNLDDQLQKLL 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 858 NAAHRDRAELQAQIEENEEELGELMKKySATV----KQLNTEQINVSEAEFKLNEMEAE-RNNLKEQVAELQHRLDNVEN 932
Cdd:pfam15921 384 ADLHKREKELSLEKEQNKRLWDRDTGN-SITIdhlrRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIQGKNESLEK 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 933 LGDPSMAMMSKRLELR--TKELESR---LELEQATRARLEVQVNRHKEALEKLQNEVTQSKMR---EMQAQDVIKKSQKS 1004
Cdd:pfam15921 463 VSSLTAQLESTKEMLRkvVEELTAKkmtLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdlKLQELQHLKNEGDH 542
|
490 500 510
....*....|....*....|....*....|..
gi 24647351 1005 LRDMREEFHAVSSREQESLTRRKDLEKKVEQM 1036
Cdd:pfam15921 543 LRNVQTECEALKLQMAEKDKVIEILRQQIENM 574
|
|
| Lebercilin |
pfam15619 |
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of ... |
554-690 |
5.06e-03 |
|
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of eukaryotic ciliary proteins. Mutations in the gene, LCA5, are implicated in the disease Leber congenital amaurosis. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Lebercilin functions as an integral element of selective protein transport through photoreceptor cilia. Lebercilin specifically interacts with the intraflagellar transport (IFT), and disruption of IFT can lead to Leber congenital amaurosis.
Pssm-ID: 464776 [Multi-domain] Cd Length: 193 Bit Score: 39.50 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 554 QKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDavrqERQAKERYGREKDVLQAEKftLEQTLADTRLDLEFK 633
Cdd:pfam15619 63 ARHNEEVRVLRERLRRLQEKERDLERKLKEKEAELLRLRD----QLKRLEKLSEDKNLAEREE--LQKKLEQLEAKLEDK 136
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 24647351 634 EEKLASLQRELEEMTfgggteeefAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQ 690
Cdd:pfam15619 137 DEKIQDLERKLELEN---------KSFRRQLAAEKKKHKEAQEEVKILQEEIERLQQ 184
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
734-1037 |
6.11e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.49 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 734 QLETEHE-ERTLLLREKHELER-------RLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGK 805
Cdd:pfam05557 20 QMELEHKrARIELEKKASALKRqldresdRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 806 TLIRQLRNQLEDAESA-RSLAMKARQTAEAELTEVQAM---FDESHRARNDAEERA---NAAHRDRAELQAQIEENEEEL 878
Cdd:pfam05557 100 ADAREVISCLKNELSElRRQIQRAELELQSTNSELEELqerLDLLKAKASEAEQLRqnlEKQQSSLAEAEQRIKELEFEI 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 879 GELmKKYSATVKQLNTEQINVSEAEF----------KLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKRLELR 948
Cdd:pfam05557 180 QSQ-EQDSEIVKNSKSELARIPELEKelerlrehnkHLNENIENKLLLKEEVEDLKRKLEREEKYREEAATLELEKEKLE 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 949 TkELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDViKKSQKSLRDMREEFHAVSSREQESLTRRKD 1028
Cdd:pfam05557 259 Q-ELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSA-RQLEKARRELEQELAQYLKKIEDLNKKLKR 336
|
....*....
gi 24647351 1029 LEKKVEQME 1037
Cdd:pfam05557 337 HKALVRRLQ 345
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
428-717 |
6.19e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 428 ERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDGVGGGVYKLKYERVARELEFTK 507
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 508 RRLHTQH------EHDLEQLVALKKH---LEMKLSDAYEEVVEqrqVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLE 578
Cdd:PRK03918 532 EKLIKLKgeikslKKELEKLEELKKKlaeLEKKLDELEEELAE---LLKELEELGFESVEELEERLKELEPFYNEYLELK 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 579 KKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLAD-TRLDLEFKEEKLASLQRELEemtfggGTEEEF 657
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRELA------GLRAEL 682
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24647351 658 AQLRRSKNETERRAKEQEEELDEM---AGQIQLLEQAKLRLEMTLETMRK---EARRESQQRDEEL 717
Cdd:PRK03918 683 EELEKRREEIKKTLEKLKEELEERekaKKELEKLEKALERVEELREKVKKykaLLKERALSKVGEI 748
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
707-1039 |
7.47e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 7.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 707 RRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERR-LSSMEDRDRVDRDAEEALNQKLRRDLRKYK 785
Cdd:PLN02939 41 GFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKsTSSDDDHNRASMQRDEAIAAIDNEQQTNSK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 786 ALLKDAQTQLERL----KADTPGKTLIRQLRNQ-LEDAE---SARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERA 857
Cdd:PLN02939 121 DGEQLSDFQLEDLvgmiQNAEKNILLLNQARLQaLEDLEkilTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 858 NAAHRDRAELQAQIEENEEELGELMKKYS----------ATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRL 927
Cdd:PLN02939 201 EQLEKLRNELLIRGATEGLCVHSLSKELDvlkeenmllkDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 928 -------------------DNVENLG----------DPSMAMMSKRLELRTK--ELESRLEleqatrarlevQVNRHKEA 976
Cdd:PLN02939 281 ivaqedvsklsplqydcwwEKVENLQdlldratnqvEKAALVLDQNQDLRDKvdKLEASLK-----------EANVSKFS 349
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24647351 977 LEKLqnEVTQSKMR----EMQAQDVIKKSQKSL-RDMREEFHAVSSREQESlTRRKDLEKKVEQMESE 1039
Cdd:PLN02939 350 SYKV--ELLQQKLKlleeRLQASDHEIHSYIQLyQESIKEFQDTLSKLKEE-SKKRSLEHPADDMPSE 414
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
801-1004 |
7.49e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 7.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 801 DTPGKTLIRQLRNQLEDAESARSLAM-----------KARQTAEAELTEVQAMFDEshrarndAEERANAAHRDRAELQA 869
Cdd:PHA02562 169 DKLNKDKIRELNQQIQTLDMKIDHIQqqiktynknieEQRKKNGENIARKQNKYDE-------LVEEAKTIKAEIEELTD 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 870 QIEENEEElgelMKKYSATVKQLNTEQINVS--------EAEF------------KLNEMEAERNNLKEQVAELQHRLDN 929
Cdd:PHA02562 242 ELLNLVMD----IEDPSAALNKLNTAAAKIKskieqfqkVIKMyekggvcptctqQISEGPDRITKIKDKLKELQHSLEK 317
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24647351 930 VENLGDPSMAMMSKRLELRTK--ELESRLELEQATRARLEVQVNRHKEALEKLQNEVT--QSKMREMQAQDVIKKSQKS 1004
Cdd:PHA02562 318 LDTAIDELEEIMDEFNEQSKKllELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVdnAEELAKLQDELDKIVKTKS 396
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
627-748 |
8.97e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 8.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647351 627 RLDLEFKEEKLASLQRELEEMtfgggtEEEFAQLrrsKNETERRAKEQEEELDEmagqiqllEQAKLRLEMTLETMRKEA 706
Cdd:COG0542 403 RMEIDSKPEELDELERRLEQL------EIEKEAL---KKEQDEASFERLAELRD--------ELAELEEELEALKARWEA 465
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 24647351 707 RRESQQRDEELEEVRGNGYKKIKALECQL---ETEHEERTLLLRE 748
Cdd:COG0542 466 EKELIEEIQELKEELEQRYGKIPELEKELaelEEELAELAPLLRE 510
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