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Conserved domains on  [gi|24647162|ref|NP_732033|]
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Ataxin-2, isoform B [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 61-132 1.14e-18

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


:

Pssm-ID: 464173  Cd Length: 78  Bit Score: 81.44  E-value: 1.14e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24647162     61 FMHSATALVGSVVEVRLRSGNIYEGVFRTFS--GNFDIALELPACIKSKNL----PEEGKVPKHIIFPADTVVTIVAK 132
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSNGsglnPVRGEIVDTMIFPAKDIVDIEAK 78
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 749-1032 1.08e-12

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 73.05  E-value: 1.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   749 PPPQTSPVVVTSPVLLEQPPPQPMPVVQQQQTQQLATPKPEVSPAPPSSNTTTPTGIASTPTAGVIASAGSEKTTPAAPT 828
Cdd:PHA03247 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   829 PTSNSATVPTGTAATAGGATGTTPVVkkhVLNPSAKPFTPRGPST-PNPSRPHTPQTPVPMtniYTTTGGHVPPAANqpi 907
Cdd:PHA03247 2791 LSESRESLPSPWDPADPPAAVLAPAA---ALPPAASPAGPLPPPTsAQPTAPPPPPGPPPP---SLPLGGSVAPGGD--- 2861

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   908 yVMQPQHPFPPQTHPQAGQPPRLRRSNYPPMAASQmhvsasaatgQPLitagPIPqfiqyghaPHQQQFQSHTYAPMQMR 987
Cdd:PHA03247 2862 -VRRRPPSRSPAAKPAAPARPPVRRLARPAVSRST----------ESF----ALP--------PDQPERPPQPQAPPPPQ 2918

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 24647162   988 VYPDQPQQLQfmtqtPQSTTPSPGQPHQQFHPPPQPSPA----GGGPQP 1032
Cdd:PHA03247 2919 PQPQPPPPPQ-----PQPPPPPPPRPQPPLAPTTDPAGAgepsGAVPQP 2962
dermokine super family cl42387
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a ...
 400-542 4.06e-04

dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a skin-specific glycoprotein that may play a regulatory role in the crosstalk between barrier dysfunction and inflammation, and therefore play a role in inflammatory diseases such as psoriasis. Dermokine is one of the most highly expressed proteins in differentiating keratinocytes, found mainly in the spinous and granular layers of the epidermis, but also in the epithelia of the small intestine, macrophages of the lung, and endothelial cells of the lung. Mouse dermokine has been reported to be encoded by 22 exons, and its expression leads to alpha, beta, and gamma transcripts.


The actual alignment was detected with superfamily member cd21118:

Pssm-ID: 455732 [Multi-domain]  Cd Length: 495  Bit Score: 44.22  E-value: 4.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162  400 SGGSMVKRKTVPQGGKVmRNNVPTGGSNVSVSQGGNGNSV-------GQNKGGYQPSMGMPSQYSYQGNSQIMHGSSQYR 472
Cdd:cd21118  217 SGGSSSSGSSGSQGSHG-SNGQGSSGSSGGQGNGGNNGSSssnsgnsGGSNGGSSGNSGSGSGGSSSGGSNGWGGSSSSG 295

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24647162  473 NQSHMGGANKLNGDSNANTNkplpqrqmRQYQGSQSNSSLNYGGEPQSLGKPVHG-SHGGHPGQNSNSPPL 542
Cdd:cd21118  296 GSGGSGGGNKPECNNPGNDV--------RMAGGGGSQGSKESSGSHGSNGGNGQAeAVGGLNTLNSDASTL 358
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 61-132 1.14e-18

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 81.44  E-value: 1.14e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24647162     61 FMHSATALVGSVVEVRLRSGNIYEGVFRTFS--GNFDIALELPACIKSKNL----PEEGKVPKHIIFPADTVVTIVAK 132
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSNGsglnPVRGEIVDTMIFPAKDIVDIEAK 78
PHA03247 PHA03247
large tegument protein UL36; Provisional
 749-1032 1.08e-12

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 73.05  E-value: 1.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   749 PPPQTSPVVVTSPVLLEQPPPQPMPVVQQQQTQQLATPKPEVSPAPPSSNTTTPTGIASTPTAGVIASAGSEKTTPAAPT 828
Cdd:PHA03247 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   829 PTSNSATVPTGTAATAGGATGTTPVVkkhVLNPSAKPFTPRGPST-PNPSRPHTPQTPVPMtniYTTTGGHVPPAANqpi 907
Cdd:PHA03247 2791 LSESRESLPSPWDPADPPAAVLAPAA---ALPPAASPAGPLPPPTsAQPTAPPPPPGPPPP---SLPLGGSVAPGGD--- 2861

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   908 yVMQPQHPFPPQTHPQAGQPPRLRRSNYPPMAASQmhvsasaatgQPLitagPIPqfiqyghaPHQQQFQSHTYAPMQMR 987
Cdd:PHA03247 2862 -VRRRPPSRSPAAKPAAPARPPVRRLARPAVSRST----------ESF----ALP--------PDQPERPPQPQAPPPPQ 2918

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 24647162   988 VYPDQPQQLQfmtqtPQSTTPSPGQPHQQFHPPPQPSPA----GGGPQP 1032
Cdd:PHA03247 2919 PQPQPPPPPQ-----PQPPPPPPPRPQPPLAPTTDPAGAgepsGAVPQP 2962
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 909-1039 1.18e-08

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 59.28  E-value: 1.18e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162    909 VMQPQHPFPPQTHPQAGQPPRLRRSNYPPMA----ASQMHVSASAATGQPLITAGPIPQFIQYGHAPHQQQFQSHTYAPM 984
Cdd:pfam09770  165 VAPKKAAAPAPAPQPAAQPASLPAPSRKMMSleevEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQ 244

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24647162    985 QMRVYPDQPQQLQFMT------QTPQSTTPSPGQPhqqfHPPPQPSPAGGGPQPAFTPPTQ 1039
Cdd:pfam09770  245 QPQQQPQQPQQHPGQGhpvtilQRPQSPQPDPAQP----SIQPQAQQFHQQPPPVPVQPTQ 301
dermokine cd21118
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a ...
 400-542 4.06e-04

dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a skin-specific glycoprotein that may play a regulatory role in the crosstalk between barrier dysfunction and inflammation, and therefore play a role in inflammatory diseases such as psoriasis. Dermokine is one of the most highly expressed proteins in differentiating keratinocytes, found mainly in the spinous and granular layers of the epidermis, but also in the epithelia of the small intestine, macrophages of the lung, and endothelial cells of the lung. Mouse dermokine has been reported to be encoded by 22 exons, and its expression leads to alpha, beta, and gamma transcripts.


Pssm-ID: 411053 [Multi-domain]  Cd Length: 495  Bit Score: 44.22  E-value: 4.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162  400 SGGSMVKRKTVPQGGKVmRNNVPTGGSNVSVSQGGNGNSV-------GQNKGGYQPSMGMPSQYSYQGNSQIMHGSSQYR 472
Cdd:cd21118  217 SGGSSSSGSSGSQGSHG-SNGQGSSGSSGGQGNGGNNGSSssnsgnsGGSNGGSSGNSGSGSGGSSSGGSNGWGGSSSSG 295

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24647162  473 NQSHMGGANKLNGDSNANTNkplpqrqmRQYQGSQSNSSLNYGGEPQSLGKPVHG-SHGGHPGQNSNSPPL 542
Cdd:cd21118  296 GSGGSGGGNKPECNNPGNDV--------RMAGGGGSQGSKESSGSHGSNGGNGQAeAVGGLNTLNSDASTL 358
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 61-132 1.14e-18

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 81.44  E-value: 1.14e-18
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24647162     61 FMHSATALVGSVVEVRLRSGNIYEGVFRTFS--GNFDIALELPACIKSKNL----PEEGKVPKHIIFPADTVVTIVAK 132
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSNGsglnPVRGEIVDTMIFPAKDIVDIEAK 78
PHA03247 PHA03247
large tegument protein UL36; Provisional
 749-1032 1.08e-12

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 73.05  E-value: 1.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   749 PPPQTSPVVVTSPVLLEQPPPQPMPVVQQQQTQQLATPKPEVSPAPPSSNTTTPTGIASTPTAGVIASAGSEKTTPAAPT 828
Cdd:PHA03247 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   829 PTSNSATVPTGTAATAGGATGTTPVVkkhVLNPSAKPFTPRGPST-PNPSRPHTPQTPVPMtniYTTTGGHVPPAANqpi 907
Cdd:PHA03247 2791 LSESRESLPSPWDPADPPAAVLAPAA---ALPPAASPAGPLPPPTsAQPTAPPPPPGPPPP---SLPLGGSVAPGGD--- 2861

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   908 yVMQPQHPFPPQTHPQAGQPPRLRRSNYPPMAASQmhvsasaatgQPLitagPIPqfiqyghaPHQQQFQSHTYAPMQMR 987
Cdd:PHA03247 2862 -VRRRPPSRSPAAKPAAPARPPVRRLARPAVSRST----------ESF----ALP--------PDQPERPPQPQAPPPPQ 2918

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 24647162   988 VYPDQPQQLQfmtqtPQSTTPSPGQPHQQFHPPPQPSPA----GGGPQP 1032
Cdd:PHA03247 2919 PQPQPPPPPQ-----PQPPPPPPPRPQPPLAPTTDPAGAgepsGAVPQP 2962
PHA03247 PHA03247
large tegument protein UL36; Provisional
 749-1041 5.81e-12

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 70.74  E-value: 5.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   749 PPPQTSPVVVTSPVLLEQPPPQPMPVVQQQQTQQLATPKPEVSPAPPSSNTTTPTGIASTPTAGVIASAGSEKTTPAAPT 828
Cdd:PHA03247 2683 PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT 2762

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   829 PTSNSATVPTGTAATAGGATGTTPVVKkhvlnpSAKPFTPRGPSTPNPSRPHTPQTP--VPMTNIYTTTGGHVPPAANQP 906
Cdd:PHA03247 2763 TAGPPAPAPPAAPAAGPPRRLTRPAVA------SLSESRESLPSPWDPADPPAAVLApaAALPPAASPAGPLPPPTSAQP 2836

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   907 IYVMQPQHPFPPQTHPQAGQPPRLRRSNYPPmaaSQMHVSASAATGQPLITAGPIPQFIQ----YGHAPHQQQFQSHTYA 982
Cdd:PHA03247 2837 TAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP---SRSPAAKPAAPARPPVRRLARPAVSRstesFALPPDQPERPPQPQA 2913

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 24647162   983 PMQMRVYPDQPQQLQfmtqtPQSTTPSPGQPHQQFHPPPQPSPAgGGPQPAFTPPTQAA 1041
Cdd:PHA03247 2914 PPPPQPQPQPPPPPQ-----PQPPPPPPPRPQPPLAPTTDPAGA-GEPSGAVPQPWLGA 2966
PHA03247 PHA03247
large tegument protein UL36; Provisional
 749-1044 4.26e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 64.57  E-value: 4.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   749 PPPQTSPVVVTSPVLLEQPPPQPMPVVQQQQTQQLATPKPEVS---PAPPSSNTTTPTGIASTPTAGVIASAGSEKTTPA 825
Cdd:PHA03247 2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRlgrAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPP 2706

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   826 --APTPTSNSATVPTGTAATAGGATGTTPVVKKHVLNPSAKPFTPRGPSTP-NPSRPHTPQTPVPMTNIYTTTGGHVPPA 902
Cdd:PHA03247 2707 tpEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPaRPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   903 ANQPIYVMQPQHPFPPQ-THPQAGQPPRLRRSNYPPMAASQMHVSASAATGQPLITAGPIPQFIQYGHA----------P 971
Cdd:PHA03247 2787 AVASLSESRESLPSPWDpADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvapggdvrrrP 2866

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   972 HQQQFQSHTYAPMQMRVY---------PDQPQQLQFMTQTPQSTTPSPGQPHQQFHPPPQPSPAGGGPQPAFTPPTQAAT 1042
Cdd:PHA03247 2867 PSRSPAAKPAAPARPPVRrlarpavsrSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946


                  ..
gi 24647162  1043 YQ 1044
Cdd:PHA03247 2947 TD 2948
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 909-1039 1.18e-08

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 59.28  E-value: 1.18e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162    909 VMQPQHPFPPQTHPQAGQPPRLRRSNYPPMA----ASQMHVSASAATGQPLITAGPIPQFIQYGHAPHQQQFQSHTYAPM 984
Cdd:pfam09770  165 VAPKKAAAPAPAPQPAAQPASLPAPSRKMMSleevEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQ 244

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24647162    985 QMRVYPDQPQQLQFMT------QTPQSTTPSPGQPhqqfHPPPQPSPAGGGPQPAFTPPTQ 1039
Cdd:pfam09770  245 QPQQQPQQPQQHPGQGhpvtilQRPQSPQPDPAQP----SIQPQAQQFHQQPPPVPVQPTQ 301
PHA03247 PHA03247
large tegument protein UL36; Provisional
 741-1045 9.82e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 9.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   741 PLPIYHTMPPPQTSPVVVTSPVLLEQPPPQPMPVVQQQQTQQLATP-----KPEVSPAPPSSNTTTPTGIASTPTAGVIA 815
Cdd:PHA03247 2734 ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPprrltRPAVASLSESRESLPSPWDPADPPAAVLA 2813

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   816 SAGSEKTT--PAA--PTPTSNSATVPTGTAATAGGATGTTPVV--------KKHVLNPSAKPFTPRGPSTPNPSRPHTPQ 883
Cdd:PHA03247 2814 PAAALPPAasPAGplPPPTSAQPTAPPPPPGPPPPSLPLGGSVapggdvrrRPPSRSPAAKPAAPARPPVRRLARPAVSR 2893

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   884 TPVPMTNIYTTTGGHVPPAANQPIyVMQPQHPFPPQTHPQAGQPPRlRRSNYPPMAASQMHVSASAATGQPLITA----- 958
Cdd:PHA03247 2894 STESFALPPDQPERPPQPQAPPPP-QPQPQPPPPPQPQPPPPPPPR-PQPPLAPTTDPAGAGEPSGAVPQPWLGAlvpgr 2971

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   959 GPIPQFIQYGHAPHQQQFQSHTYAP--------------MQMRVYPDQP-----QQLQFMTQTPQSTT------------ 1007
Cdd:PHA03247 2972 VAVPRFRVPQPAPSREAPASSTPPLtghslsrvsswassLALHEETDPPpvslkQTLWPPDDTEDSDAdslfdsdsersd 3051

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 24647162  1008 -----PSPGQPHQQFHPPPQPSPAGGG----PQPAFTPPTQAATYQL 1045
Cdd:PHA03247 3052 lealdPLPPEPHDPFAHEPDPATPEAGaresPSSQFGPPPLSANAAL 3098
PHA03378 PHA03378
EBNA-3B; Provisional
 859-1037 8.29e-06

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 50.07  E-value: 8.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   859 LNPSAKPFTPRGP-STPNPSRPhtPQT-PVPMTNIYTTTGGHVPPAANQPiyVMQPQHPFPPQTHPQAGQPPRLRRSNYP 936
Cdd:PHA03378  685 LPIQWAPGTMQPPpRAPTPMRP--PAApPGRAQRPAAATGRARPPAAAPG--RARPPAAAPGRARPPAAAPGRARPPAAA 760

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   937 PMAASQMHVSASAATGQPLITAGPIPQFIQYGHAPHQQQFQShtyAPMQMRVYPDQPQQ---------LQFMTQTPQSTT 1007
Cdd:PHA03378  761 PGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQA---GPTSMQLMPRAAPGqqgptkqilRQLLTGGVKRGR 837

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 24647162  1008 PS---PGQPHQQFHPPPQPSPAGGGPQ-----PAFTPP 1037
Cdd:PHA03378  838 PSlkkPAALERQAAAGPTPSPGSGTSDkivqaPVFYPP 875
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 861-1021 8.30e-06

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 50.08  E-value: 8.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   861 PSAKPFTPRGPSTPNPSRPHTPQTPVPMTNiytttgghvPPAANQPIYvMQPQHPFPPQthpQAGQPPRLRRSNYPPMAA 940
Cdd:PRK10263  740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQ---------QPVAPQPQY-QQPQQPVAPQ---PQYQQPQQPVAPQPQYQQ 806

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   941 SQMHVSASAATGQPLITAGPIPQFIQYgHAPHQQQFQSHTYAPMQMRVYPDQPQQlqfmtqtpQSTTPSPGQphQQFHPP 1020
Cdd:PRK10263  807 PQQPVAPQPQYQQPQQPVAPQPQYQQP-QQPVAPQPQDTLLHPLLMRNGDSRPLH--------KPTTPLPSL--DLLTPP 875


                  .
gi 24647162  1021 P 1021
Cdd:PRK10263  876 P 876
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 900-1053 2.07e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 48.88  E-value: 2.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162    900 PPAANQPIYVMqPQHPFPPQTHPQAGQPPRLRRSNYPPMAASQMHVSasaatgqplitagpiPQFIQYGHAPHQQQFQsh 979
Cdd:pfam09770  208 KKPAQQPAPAP-AQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQP---------------QQHPGQGHPVTILQRP-- 269

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24647162    980 TYAPMQMRVYPDQPQQLQFMTQTPqsttPSPGQPHQQFHPPPQPSPAGGGPQPAFTPPTQAATYQLMCVHPQSL 1053
Cdd:pfam09770  270 QSPQPDPAQPSIQPQAQQFHQQPP----PVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSF 339
PHA03247 PHA03247
large tegument protein UL36; Provisional
 783-1041 2.24e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 2.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   783 LATPKPEVSPAP----PSSNTTTPTGIASTPTAGV-------IASAGSEKTTPAAP-----------TPTSNSATVPTGT 840
Cdd:PHA03247 2501 GGPPDPDAPPAPsrlaPAILPDEPVGEPVHPRMLTwirgleeLASDDAGDPPPPLPpaappaapdrsVPPPRPAPRPSEP 2580

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   841 AATAGGATGTTPVVKKHVLNPSAKPFTPRGPSTPNPSRP--HTPQTPVPMTNIYTTTGGHVPPAANQPiyvmqPQHPFPP 918
Cdd:PHA03247 2581 AVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPdtHAPDPPPPSPSPAANEPDPHPPPTVPP-----PERPRDD 2655

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   919 QTHPQAGQPPRLRRSNYPPMAASQMH----VSASAATGQPLITAGPIPQFIQYGHAPHQQQFQSHTYAPMQMRVYPDQPQ 994
Cdd:PHA03247 2656 PAPGRVSRPRRARRLGRAAQASSPPQrprrRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL 2735

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 24647162   995 QLQFMTQTPQSTTPSPGQPHQQFHP-----PPQPSPAG---GGPQPAFTPPTQAA 1041
Cdd:PHA03247 2736 PAAPAPPAVPAGPATPGGPARPARPpttagPPAPAPPAapaAGPPRRLTRPAVAS 2790
PHA03247 PHA03247
large tegument protein UL36; Provisional
 784-1040 3.28e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 3.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   784 ATPKPEVSP---------------APPSSNTTTPTGIASTPTAGVIASAGSEKTTPA------APTPTSNSATVPTGTAA 842
Cdd:PHA03247 2567 SVPPPRPAPrpsepavtsrarrpdAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHApdppppSPSPAANEPDPHPPPTV 2646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   843 TAGGATGTTPVVKKHVLNPSAK-PFTPRGPSTPnPSRPHTPQTPVPMTNIYTTTGGHVPPAANQPI-YVMQPQHPFPPQT 920
Cdd:PHA03247 2647 PPPERPRDDPAPGRVSRPRRARrLGRAAQASSP-PQRPRRRAARPTVGSLTSLADPPPPPPTPEPApHALVSATPLPPGP 2725

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   921 HPQAGQPPRLRRSNYPPMAASQMHVSAS-AATGQPLITAGPI----PQFIQYGHAPHQQQFQSHTYAPMQMRV-YPDQPQ 994
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPGGpARPARPPTTAGPPapapPAAPAAGPPRRLTRPAVASLSESRESLpSPWDPA 2805

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 24647162   995 QLQFMTQTPQSTTPSPGQPHQQFHPPPQPSPAGGGPQPAFTPPTQA 1040
Cdd:PHA03247 2806 DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLP 2851
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 791-1042 3.62e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 47.65  E-value: 3.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162    791 SPAPPSSNTTTPTGIASTPTAGVIASAGSEKTTPAAPTPTSNSATVPTGTAATAGGATGTTPVVKKHVLNPSAKPFTPRG 870
Cdd:pfam17823  112 SRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAA 191

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162    871 PSTPNPSRPHTPQTPVPMTNIYTTTGGHVPPAANQPIYVMqpqhpfpPQTHPQAGQPPRLRRSNYPPMAASQMHVSASAA 950
Cdd:pfam17823  192 SSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAV-------GNSSPAAGTVTAAVGTVTPAALATLAAAAGTVA 264

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162    951 TGQPLITAGpipqfiqyghAPHQQQFQSHTYAPMQ-MRVYPDQPQQLQFMTQTPQSTTpspGQPHQQFHPPPQPSPAGGG 1029
Cdd:pfam17823  265 SAAGTINMG----------DPHARRLSPAKHMPSDtMARNPAAPMGAQAQGPIIQVST---DQPVHNTAGEPTPSPSNTT 331

                          250
                   ....*....|...
gi 24647162   1030 PQPAfTPPTQAAT 1042
Cdd:pfam17823  332 LEPN-TPKSVAST 343
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 789-1041 4.00e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 47.77  E-value: 4.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   789 EVSPAPPSSNTTTPTGIASTPTAGVIASAGS-EKTTPAAPTPTSNSATV-PTGTAATAGGATGTTPVVKkhvlnPSAKPF 866
Cdd:PRK10263  306 EYDPLLNGAPITEPVAVAAAATTATQSWAAPvEPVTQTPPVASVDVPPAqPTVAWQPVPGPQTGEPVIA-----PAPEGY 380

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   867 TPRgPSTPNPSRPHTP--QTPVPMTNIYTTTGGHVPPaaNQPIYVMQPQHPFPPQTHPQAGQPPRLRRSNYPPMAASQMH 944
Cdd:PRK10263  381 PQQ-SQYAQPAVQYNEplQQPVQPQQPYYAPAAEQPA--QQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFA 457

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   945 VSASAATGQPLITagPIPQFIQYGHAPHQQQFQSHTYAPMQMRVYPDQPqQLQFMTQTPQSTTPSPGQPHQQFHPPPQP- 1023
Cdd:PRK10263  458 PQSTYQTEQTYQQ--PAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARP-PLYYFEEVEEKRAREREQLAAWYQPIPEPv 534

                         250       260
                  ....*....|....*....|....
gi 24647162  1024 ------SPAGGGPQPAFTPPTQAA 1041
Cdd:PRK10263  535 kepepiKSSLKAPSVAAVPPVEAA 558
PHA03247 PHA03247
large tegument protein UL36; Provisional
 743-1084 2.48e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 2.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   743 PIYHTMPPPQTSPvvvtSPVLLEQPPPQPMPVVQQQQTQQLATPkPEVS----------PAPPSSNTTTPTGIASTPTAG 812
Cdd:PHA03247 2619 PDTHAPDPPPPSP----SPAANEPDPHPPPTVPPPERPRDDPAP-GRVSrprrarrlgrAAQASSPPQRPRRRAARPTVG 2693

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   813 VIASAGSEKTTPA--APTPTSNSATVPTGTAATAGGATGTTPVVKKHVLNPSAKPFTPRGPSTP-NPSRPHTPQTPVPMT 889
Cdd:PHA03247 2694 SLTSLADPPPPPPtpEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPaRPPTTAGPPAPAPPA 2773

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   890 NIYTTTGGHVPPAANQPIYVMQPQHPFPPQTHPQAgqpprlrrSNYPPMAASQMHVSASAATGQPLITAGPIpqfiqygh 969
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPP--------AAVLAPAAALPPAASPAGPLPPPTSAQPT-------- 2837

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   970 APHQQQFQSHTYAPMQMRVYPDQPQQLQFMTQTPQSTTPSPGQPHQQFHPPPQPSPAgggPQPAFTPPTQAATYQlmcvH 1049
Cdd:PHA03247 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRS---TESFALPPDQPERPP----Q 2910

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 24647162  1050 PQSllanhyfppptPQHPQQNQQQYQIVMQQHQPQ 1084
Cdd:PHA03247 2911 PQA-----------PPPPQPQPQPPPPPQPQPPPP 2934
dermokine cd21118
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a ...
 400-542 4.06e-04

dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a skin-specific glycoprotein that may play a regulatory role in the crosstalk between barrier dysfunction and inflammation, and therefore play a role in inflammatory diseases such as psoriasis. Dermokine is one of the most highly expressed proteins in differentiating keratinocytes, found mainly in the spinous and granular layers of the epidermis, but also in the epithelia of the small intestine, macrophages of the lung, and endothelial cells of the lung. Mouse dermokine has been reported to be encoded by 22 exons, and its expression leads to alpha, beta, and gamma transcripts.


Pssm-ID: 411053 [Multi-domain]  Cd Length: 495  Bit Score: 44.22  E-value: 4.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162  400 SGGSMVKRKTVPQGGKVmRNNVPTGGSNVSVSQGGNGNSV-------GQNKGGYQPSMGMPSQYSYQGNSQIMHGSSQYR 472
Cdd:cd21118  217 SGGSSSSGSSGSQGSHG-SNGQGSSGSSGGQGNGGNNGSSssnsgnsGGSNGGSSGNSGSGSGGSSSGGSNGWGGSSSSG 295

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24647162  473 NQSHMGGANKLNGDSNANTNkplpqrqmRQYQGSQSNSSLNYGGEPQSLGKPVHG-SHGGHPGQNSNSPPL 542
Cdd:cd21118  296 GSGGSGGGNKPECNNPGNDV--------RMAGGGGSQGSKESSGSHGSNGGNGQAeAVGGLNTLNSDASTL 358
PHA03378 PHA03378
EBNA-3B; Provisional
 788-1035 4.66e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 44.29  E-value: 4.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   788 PEVSPAPPSSNTTTPTGIASTPTAG-------VIASAGSEKTTPAAPTPTSNSATVPTGTAATAGGATGTTPvvkkhvln 860
Cdd:PHA03378  655 PQVEITPYKPTWTQIGHIPYQPSPTgantmlpIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARP-------- 726

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   861 PSAKPFTPRGPSTPNPSRPHTPQTPVPMTNIYTTTGGHVPPAAN--QPIYVMQPQHPFPPQTHPQAGQPPrlrrSNYPPM 938
Cdd:PHA03378  727 PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAApgAPTPQPPPQAPPAPQQRPRGAPTP----QPPPQA 802

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   939 AASQMHVSASAATGQPLITAGPIPQF----IQYGHAPHQQQFQSHTYAPMQMR----------------VYPDQPQQLQF 998
Cdd:PHA03378  803 GPTSMQLMPRAAPGQQGPTKQILRQLltggVKRGRPSLKKPAALERQAAAGPTpspgsgtsdkivqapvFYPPVLQPIQV 882

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24647162   999 MTQ-----------TPQSTTPSPGQ-------PHQQFHPP--------PQPSPAGGGPQPAFT 1035
Cdd:PHA03378  883 MRQlgsvraaaastVTQAPTEYTGErrgvgpmHPTDIPPSkraktdayVESQPPHGGQSHSFS 945
dnaA PRK14086
chromosomal replication initiator protein DnaA;
863-1050 5.73e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 44.05  E-value: 5.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   863 AKPFTPRGPSTPNPSRPHTPQTPVPmtniyttTGGHVPPAANQPIYVMQPQHPFPPQTHPQAGQPPRlrRSNYPPmaasq 942
Cdd:PRK14086   95 PAPPPPHARRTSEPELPRPGRRPYE-------GYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPE--PGAWPR----- 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   943 mhvsASAATGQPLITAGPIPQfiqyghAPHQQQFQSHTYAPMQMRVYPDQPQQLQFMTQTPQSTTPSPGQPHQQFHPPPQ 1022
Cdd:PRK14086  161 ----AADDYGWQQQRLGFPPR------APYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPE 230

                         170       180
                  ....*....|....*....|....*...
gi 24647162  1023 PSPAGGGPQPAFTPPTQAATYQLMCVHP 1050
Cdd:PRK14086  231 PPPGAGHVHRGGPGPPERDDAPVVPIRP 258
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 950-1050 7.04e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.92  E-value: 7.04e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   950 ATGQPLITAGPIPQFIQYGHAPHQQQFQ-SHTYAPMQMRVYPDQPQQLQFMTQTPQsttpSPGQPHQQFHPPPQPSpagg 1028
Cdd:PRK10263  753 QQPQQPVAPQQQYQQPQQPVAPQPQYQQpQQPVAPQPQYQQPQQPVAPQPQYQQPQ----QPVAPQPQYQQPQQPV---- 824

                          90       100
                  ....*....|....*....|....
gi 24647162  1029 GPQPAFTPPTQ--AATYQLMCVHP 1050
Cdd:PRK10263  825 APQPQYQQPQQpvAPQPQDTLLHP 848
PHA03247 PHA03247
large tegument protein UL36; Provisional
 789-939 8.48e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 8.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   789 EVSPAPPSSNTTTPTGIAS------TPTAGVIASAGSEKTTPAAPTPTSNSATVPTGTAataggatgttPVVKKHVLNPS 862
Cdd:PHA03247  335 EVVSPLPRPRQHYPLGFPKrrrptwTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAAT----------PFARGPGGDDQ 404

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   863 AKPFTPRGPSTPNP-------SRPHTPQTPVPMTNIYTTTGGHVPPAANQPIYVMQPQHPFPPQTHPQAGQPPRLRRSNY 935
Cdd:PHA03247  405 TRPAAPVPASVPTPaptpvpaSAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPE 484


                  ....
gi 24647162   936 PPMA 939
Cdd:PHA03247  485 PPGA 488
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 852-1043 3.92e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.21  E-value: 3.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   852 PVVKKHVLNPSA--KPFTPRGPSTP----NPSRPHTPQTPVPMTNIYTTTGGHVPPAANQPIyvmQPQHPFPPQThPQAG 925
Cdd:PTZ00449  582 PKDPKHPKDPEEpkKPKRPRSAQRPtrpkSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPS---SPERPEGPKI-IKSP 657

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   926 QPPRLRRSNYPPMAASQMHVSASAATGQPLITAGPIPQfiqyghaphQQQFQSHTYAPMqmrvypdqPQQLQFMTQTPQS 1005
Cdd:PTZ00449  658 KPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVL---------DESFESILKETL--------PETPGTPFTTPRP 720

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 24647162  1006 TTPS-PGQPHQQFHPPPQPSPAGGGPQPAFTPPTQAATY 1043
Cdd:PTZ00449  721 LPPKlPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTF 759
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 787-1010 4.92e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 40.68  E-value: 4.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   787 KPEVSPAPPSSNTTTPtgiASTPTAGViaSAGSEKTTPAAPTPTSNSATVptgtaataggATGTTPVVKKHVLNPSAKPF 866
Cdd:PLN03209  381 KPPTSPIPTPPSSSPA---SSKSVDAV--AKPAEPDVVPSPGSASNVPEV----------EPAQVEAKKTRPLSPYARYE 445

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   867 TPRGPSTPNPSRPHTPQTPVPMTNIYTTTGGHVPP-----AANQPIYVMQPQHPFPPQTHPQAGQPPrlrrsnyPPMAAS 941
Cdd:PLN03209  446 DLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPAtaatdAAAPPPANMRPLSPYAVYDDLKPPTSP-------SPAAPV 518

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24647162   942 QMHVSASAATGQPLITAGPIPQFIQYGHAPHQQQfqsHTYAPMQMrvYPDqpqqlqfmTQTPQSTTPSP 1010
Cdd:PLN03209  519 GKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKP---RPLSPYTM--YED--------LKPPTSPTPSP 574
PHA03247 PHA03247
large tegument protein UL36; Provisional
 868-1037 5.41e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 5.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   868 PRGPSTPNPSRPHTPQTPVPMTNIYTTTGGHVPPAANQPIyvmqpqHPFPPQTHPQAGQPPrlrrsnyPPMAASqmhvSA 947
Cdd:PHA03247 2498 PGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWI------RGLEELASDDAGDPP-------PPLPPA----AP 2560

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   948 SAATGQPLITAGPIPQFIQyghaPHQQQFQSHTYAPMQmRVYPDQPQQLQFMTQTPQSTTPSPGQPHQQFHPPPQPSPAG 1027
Cdd:PHA03247 2561 PAAPDRSVPPPRPAPRPSE----PAVTSRARRPDAPPQ-SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAA 2635

                         170
                  ....*....|...
gi 24647162  1028 ---GGPQPAFTPP 1037
Cdd:PHA03247 2636 nepDPHPPPTVPP 2648
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 805-933 5.60e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.85  E-value: 5.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   805 IASTPTAGVIASAGSEKTTPAAPTPTSnSATVPTGTAATAGGATGTTPVVKKhvlNPSAKPftPRGPSTPNPSRPHTPQT 884
Cdd:PRK14951  362 LAFKPAAAAEAAAPAEKKTPARPEAAA-PAAAPVAQAAAAPAPAAAPAAAAS---APAAPP--AAAPPAPVAAPAAAAPA 435

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 24647162   885 PVPMTNIYTTTGGHVPPAANQPIYVM-------QPQHPFPPQTHPQAGQPPRLRRS 933
Cdd:PRK14951  436 AAPAAAPAAVALAPAPPAQAAPETVAipvrvapEPAVASAAPAPAAAPAAARLTPT 491
PHA03378 PHA03378
EBNA-3B; Provisional
 787-1044 7.14e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 40.44  E-value: 7.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   787 KPEVSPAPPSSNTTTPtGIASTPTAGVIASAGSE-KTTPAAPTPTSNSATVPTGTAATAGGATGTTPVVKKHVLNPSAKp 865
Cdd:PHA03378  575 QPLTSPTTSQLASSAP-SYAQTPWPVPHPSQTPEpPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPH- 652

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   866 FTPRGPSTPNPSR----PHTPQTPVPmTNIYTTTGGHVPPAANQPIyVMQPQHPFPPQTHPQAGQPPRLRRSNYPPMAAS 941
Cdd:PHA03378  653 QPPQVEITPYKPTwtqiGHIPYQPSP-TGANTMLPIQWAPGTMQPP-PRAPTPMRPPAAPPGRAQRPAAATGRARPPAAA 730

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162   942 QMHVSASAATGQPLITAGPIPQFIQYGHAphqqqfqshtyAPMQMRvypdqPQQLQFMTQTPQSTTPSPGQPHQQFH--P 1019
Cdd:PHA03378  731 PGRARPPAAAPGRARPPAAAPGRARPPAA-----------APGRAR-----PPAAAPGAPTPQPPPQAPPAPQQRPRgaP 794

                         250       260
                  ....*....|....*....|....*
gi 24647162  1020 PPQPSPAgGGPQPAFTPPTQAATYQ 1044
Cdd:PHA03378  795 TPQPPPQ-AGPTSMQLMPRAAPGQQ 818
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 784-1041 8.76e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 39.94  E-value: 8.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162    784 ATPKPEVSPAPPSSNTTTPTGIASTPTAGVIASAGSEKTTPAAPTPTSNSATVPTGTAATAGGATGTTPVVKKHV--LNP 861
Cdd:pfam17823  143 SAPRAAACRANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATatGHP 222

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162    862 SAKPFTPRGPSTPNPSRPHTPQTPVPMTNIYTTTGGHVPPAANQPIYVmQPQHPFPPQTHPQAGQPPR-LRRSNYPPMAA 940
Cdd:pfam17823  223 AAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTI-NMGDPHARRLSPAKHMPSDtMARNPAAPMGA 301

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647162    941 SQMHVSASAATGQPLITAGPIPQFIQYGHAPHQQQFQShtYAPMQMRVYPDQPQQLQFMTQTPQSTTPSPGQPH-QQFHP 1019
Cdd:pfam17823  302 QAQGPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTPKS--VASTNLAVVTTTKAQAKEPSASPVPVLHTSMIPEvEATSP 379

                          250       260
                   ....*....|....*....|..
gi 24647162   1020 PPQPSPagggpqpafTPPTQAA 1041
Cdd:pfam17823  380 TTQPSP---------LLPTQGA 392
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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