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Conserved domains on  [gi|24662258|ref|NP_729617|]
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CTD nuclear envelope phosphatase 1 regulatory subunit 2, isoform A [Drosophila melanogaster]

Protein Classification

Tmemb_18A domain-containing protein( domain architecture ID 10561090)

Tmemb_18A domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tmemb_18A pfam09771
Transmembrane protein 188; The function of this family of transmembrane proteins has not, as ...
 4-121 2.38e-72

Transmembrane protein 188; The function of this family of transmembrane proteins has not, as yet, been determined.


:

Pssm-ID: 401646  Cd Length: 118  Bit Score: 211.36  E-value: 2.38e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662258     4 SACEDLKAFERRLTEVVSSYRPSTFRWRIVLSAMSMCTAISAWYWLRDPRTTVVPLTESLWIHPVFTVATLTLVVLFILG 83
Cdd:pfam09771   1 TACEDLKAFERRLTEVIASLQPSTTRWRIVLGAISVCTAIGAWHWLTDPETSQVSFFQSLWNHPFFTISSITLILLFLFG 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 24662258    84 IQKLVIAPQIITSRTRMVLGDFNMSCDDTGKLILKPRQ 121
Cdd:pfam09771  81 VHKRVVAPSIIASRTRSVLSDFNMSCDDTGKLILKPRP 118
 
Name Accession Description Interval E-value
Tmemb_18A pfam09771
Transmembrane protein 188; The function of this family of transmembrane proteins has not, as ...
 4-121 2.38e-72

Transmembrane protein 188; The function of this family of transmembrane proteins has not, as yet, been determined.


Pssm-ID: 401646  Cd Length: 118  Bit Score: 211.36  E-value: 2.38e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662258     4 SACEDLKAFERRLTEVVSSYRPSTFRWRIVLSAMSMCTAISAWYWLRDPRTTVVPLTESLWIHPVFTVATLTLVVLFILG 83
Cdd:pfam09771   1 TACEDLKAFERRLTEVIASLQPSTTRWRIVLGAISVCTAIGAWHWLTDPETSQVSFFQSLWNHPFFTISSITLILLFLFG 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 24662258    84 IQKLVIAPQIITSRTRMVLGDFNMSCDDTGKLILKPRQ 121
Cdd:pfam09771  81 VHKRVVAPSIIASRTRSVLSDFNMSCDDTGKLILKPRP 118
 
Name Accession Description Interval E-value
Tmemb_18A pfam09771
Transmembrane protein 188; The function of this family of transmembrane proteins has not, as ...
 4-121 2.38e-72

Transmembrane protein 188; The function of this family of transmembrane proteins has not, as yet, been determined.


Pssm-ID: 401646  Cd Length: 118  Bit Score: 211.36  E-value: 2.38e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662258     4 SACEDLKAFERRLTEVVSSYRPSTFRWRIVLSAMSMCTAISAWYWLRDPRTTVVPLTESLWIHPVFTVATLTLVVLFILG 83
Cdd:pfam09771   1 TACEDLKAFERRLTEVIASLQPSTTRWRIVLGAISVCTAIGAWHWLTDPETSQVSFFQSLWNHPFFTISSITLILLFLFG 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 24662258    84 IQKLVIAPQIITSRTRMVLGDFNMSCDDTGKLILKPRQ 121
Cdd:pfam09771  81 VHKRVVAPSIIASRTRSVLSDFNMSCDDTGKLILKPRP 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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