|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
994-1863 |
8.31e-26 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 117.08 E-value: 8.31e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 994 KQLNDTIQNLEKVNAKLSEdntvshtvhskLNESL--LKAQKELDLRAKiieNLEASERNLSMKLcelkdLKNKLKSSDE 1071
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNE-----------LERQLksLERQAEKAERYK---ELKAELRELELAL-----LVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1072 KIAQiketYEEQIKALQAKCdmeakknEHLERNQNQSLTQLKEDALENCVlMSTKLEELQAKLQEGQQLVDSQKLELDMN 1151
Cdd:TIGR02168 240 ELEE----LQEELKEAEEEL-------EELTAELQELEEKLEELRLEVSE-LEEEIEELQKELYALANEISRLEQQKQIL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1152 RKELA-LVKSAYEAQTKLSDDLQRQKESGQQLVDN------LKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQL 1224
Cdd:TIGR02168 308 RERLAnLERQLEELEAQLEELESKLDELAEELAELeekleeLKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1225 VDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLkvELDKERKELAQVNSAFEAQTKLSDDLQRQKES 1304
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEALEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1305 AQQLVDNLKVELDKERKELAQVNSAFEAqtklSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTK------- 1377
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDS----LERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaiea 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1378 -LSDDLQ----RQKESAQQLVDNLKveldkeRKELAKVkSVIEAQTKLSDDLQ-RQKESAQQLEAQTKLSDDLQRQKESA 1451
Cdd:TIGR02168 542 aLGGRLQavvvENLNAAKKAIAFLK------QNELGRV-TFLPLDSIKGTEIQgNDREILKNIEGFLGVAKDLVKFDPKL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1452 QQLVDNLkveldkerkeLAQVKSVIEAQTKLsdDLQRQKESAQQLVdnlkmELDKER--------KELAQVKSAIGAQTK 1523
Cdd:TIGR02168 615 RKALSYL----------LGGVLVVDDLDNAL--ELAKKLRPGYRIV-----TLDGDLvrpggvitGGSAKTNSSILERRR 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1524 LSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEaqtklsdDLKLQKEDAQREVFLVKERLVKEKREFEvklaTLE 1603
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELE-------QLRKELEELSRQISALRKDLARLEAEVE----QLE 746
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1604 DIIETLEMRCTQMEEERATAYEQINKLENRCQE-KDNVKSSQLQVETFKVECLhhQLKSEMATHNSLVEDLNRKLAEKVS 1682
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEaEAEIEELEAQIEQLKEELK--ALREALDELRAELTLLNEEAANLRE 824
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1683 KLDFVQSRLMTEIAEHNQVKDQLAQITDipKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAqilr 1762
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSE--DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE---- 898
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1763 MEETAREVGNKNAELceliefyRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGdtysaaegrQTESDQDKERYQK 1842
Cdd:TIGR02168 899 LSEELRELESKRSEL-------RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY---------SLTLEEAEALENK 962
|
890 900
....*....|....*....|.
gi 386764405 1843 LALDCKILQAKYRDAKDEIKR 1863
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1125-1889 |
2.63e-25 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 115.54 E-value: 2.63e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1125 TKLEELQAKLQEGQqlVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAI 1204
Cdd:TIGR02168 213 ERYKELKAELRELE--LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1205 GAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQV 1284
Cdd:TIGR02168 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1285 NSAFEaqtklsdDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLkvELDKERKE 1364
Cdd:TIGR02168 371 ESRLE-------ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1365 LAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQ-RQKESAQQLEAQTKLSDD 1443
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgFSEGVKALLKNQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1444 LQRqkesaqqLVDNLKVEldkERKELAqvksvIEAqtKLSDDLQ----RQKESAQQLVDNLKmELDKERKELAQVKSaIG 1519
Cdd:TIGR02168 522 LGV-------LSELISVD---EGYEAA-----IEA--ALGGRLQavvvENLNAAKKAIAFLK-QNELGRVTFLPLDS-IK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1520 AQTKLSDDLECQKEsvQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLK----LQKEDAQREVFLVKE--------R 1587
Cdd:TIGR02168 583 GTEIQGNDREILKN--IEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDnaleLAKKLRPGYRIVTLDgdlvrpggV 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1588 LVKEKREFE-------VKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKD------NVKSSQLQVETFKVEC 1654
Cdd:TIGR02168 661 ITGGSAKTNssilerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkeleelSRQISALRKDLARLEA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1655 LHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQI-----TDIPKVVELQHRLEAETAERE 1729
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkeelkALREALDELRAELTLLNEEAA 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1730 EAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEfyrnRVEALERLLLASNQELEELNSIQ 1809
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES----ELEALLNERASLEEALALLRSEL 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1810 SNQAEGVRDLGDTYSAAEgRQTESDQDK-----ERYQKLALDCKILQAK----YRDAKDEIKRCEKKIKDQRLEMEGKLE 1880
Cdd:TIGR02168 897 EELSEELRELESKRSELR-RELEELREKlaqleLRLEGLEVRIDNLQERlseeYSLTLEEAEALENKIEDDEEEARRRLK 975
|
....*....
gi 386764405 1881 KMKNKMRSL 1889
Cdd:TIGR02168 976 RLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1222-1958 |
6.60e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 110.92 E-value: 6.60e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1222 QQLVDNLKvELEKERKEL-AQVKSVIEAQtklsdDLQREKESAQQLVdnLKVELDKERKELAQVNSAFEAQTKLSDDLQR 1300
Cdd:TIGR02168 189 DRLEDILN-ELERQLKSLeRQAEKAERYK-----ELKAELRELELAL--LVLRLEELREELEELQEELKEAEEELEELTA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1301 QKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSD 1380
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1381 DLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRqkESAQQLEAQTKLSDDLQRQKESAQQLVDNLKv 1460
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS--KVAQLELQIASLNNEIERLEARLERLEDRRE- 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1461 ELDKERKELAQ--VKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIgaqtklsDDLECQKESVQQL 1538
Cdd:TIGR02168 418 RLQQEIEELLKklEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL-------DAAERELAQLQAR 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1539 VDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEdaqrevflvkerLVKEKREFEVKLATL---------------- 1602
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE------------LISVDEGYEAAIEAAlggrlqavvvenlnaa 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1603 EDIIETLE----MRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVEclHHQLKSEMATHNSLVEDL---NR 1675
Cdd:TIGR02168 559 KKAIAFLKqnelGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPK--LRKALSYLLGGVLVVDDLdnaLE 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1676 KLAEKVSKLDFV---------------------QSRLMT--EIAEHNQVKDQLAQitdipKVVELQHRLEAETAEREEAQ 1732
Cdd:TIGR02168 637 LAKKLRPGYRIVtldgdlvrpggvitggsaktnSSILERrrEIEELEEKIEELEE-----KIAELEKALAELRKELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1733 NKLAVVTGRLDEITRELDNARLE---HGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQ 1809
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDlarLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1810 SNQAEGVRDLGDTYSAAEGRQTESdqdKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRLEMEG------KLEKMK 1883
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLL---NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESlaaeieELEELI 868
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386764405 1884 NKMRSlYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLRHLQ 1958
Cdd:TIGR02168 869 EELES-ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
994-1633 |
9.68e-23 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 106.94 E-value: 9.68e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 994 KQLNDTIQNLEKVNAKLSEdntvshtVHSKLNEslLKAQKELDLRAKIIENlEASERNLSMKLCELKDLKNKLKSSDEKI 1073
Cdd:COG1196 179 RKLEATEENLERLEDILGE-------LERQLEP--LERQAEKAERYRELKE-ELKELEAELLLLKLRELEAELEELEAEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1074 AQIKETYEEQIKALQAkcdmeakknehlernqnqsltqlkedalencvlMSTKLEELQAKLQEGQQLVDSQKLELDMNRK 1153
Cdd:COG1196 249 EELEAELEELEAELAE---------------------------------LEAELEELRLELEELELELEEAQAEEYELLA 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1154 ELAlvksayeaqtklsdDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELE 1233
Cdd:COG1196 296 ELA--------------RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1234 KERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLK 1313
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1314 VELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQlv 1393
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL-- 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1394 DNLKVELDKERKELAKVKSVIEA------QTKLSDDLQRQKESAQQLEAQ-----TKLSDDLQRQKESAQQLVDNLKVE- 1461
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAalaaalQNIVVEDDEVAAAAIEYLKAAkagraTFLPLDKIRARAALAAALARGAIGa 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1462 ----LDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQ 1537
Cdd:COG1196 600 avdlVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1538 LVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQME 1617
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
650
....*....|....*.
gi 386764405 1618 EERATAYEQINKLENR 1633
Cdd:COG1196 760 PDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
825-1636 |
3.25e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 105.52 E-value: 3.25e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 825 LRSKNEELAKqnINGIIK-RNKFITSLEVNTEKVKQY--ITDLEEEAFKR--KQKVVQLENTLSKEQSNAKEMAQRLDIA 899
Cdd:TIGR02168 181 LERTRENLDR--LEDILNeLERQLKSLERQAEKAERYkeLKAELRELELAllVLRLEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 900 QQEIKDYHVEairfINTIRDRLQQdfngvntpqqlgtcmteflkmydqMEVRYEESSSLVEKLTESQAKLEMQVAELQVE 979
Cdd:TIGR02168 259 TAELQELEEK----LEELRLEVSE------------------------LEEEIEELQKELYALANEISRLEQQKQILRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 980 LENKDTNQhsgaliKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCEL 1059
Cdd:TIGR02168 311 LANLERQL------EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1060 KDLKNKLKSSDEKIAQIKETYEEQIKALQakcdmeakknEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQ 1139
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERLE----------DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1140 LVDSQKLELDMNRKELALVKSAYeaqtklsDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLecqke 1219
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQAL-------DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL----- 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1220 sgQQLVDNLKVElekERKELAqvksvIEAqtKLSDDLQ----REKESAQQLVDNLKvELDKERKELAQVNSAFEAQTKLS 1295
Cdd:TIGR02168 523 --GVLSELISVD---EGYEAA-----IEA--ALGGRLQavvvENLNAAKKAIAFLK-QNELGRVTFLPLDSIKGTEIQGN 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1296 DDLQRQKESAQQLVDNlkvELDKERKELAQVNSAFEAQTKLSDDLQrekeSAQQLVDNLK-----VELDKER-------- 1362
Cdd:TIGR02168 590 DREILKNIEGFLGVAK---DLVKFDPKLRKALSYLLGGVLVVDDLD----NALELAKKLRpgyriVTLDGDLvrpggvit 662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1363 KELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQ-QLEAQTKLS 1441
Cdd:TIGR02168 663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRkDLARLEAEV 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1442 DDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQ 1521
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1522 TKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEvklaT 1601
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE----E 898
|
810 820 830
....*....|....*....|....*....|....*
gi 386764405 1602 LEDIIETLEMRCTQMEEERATAYEQINKLENRCQE 1636
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1023-1629 |
2.16e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 102.71 E-value: 2.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1023 KLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLE 1102
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1103 RNQNQSLTQLKEDALEncvlmstkLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQL 1182
Cdd:COG1196 316 ERLEELEEELAELEEE--------LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1183 VDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQ-------QLVDNLKVELEKERKELAQVKSVIEAQTKLSDD 1255
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEealaeleEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1256 LQREKESAQQLVDNLKVELDKER------KELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELA----- 1324
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAarllllLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAalaaa 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1325 ---QVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVE-- 1399
Cdd:COG1196 548 lqnIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRtl 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1400 --LDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIE 1477
Cdd:COG1196 628 vaARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1478 AQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDnlkvELEKERKELAKVN 1557
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE----RLEREIEALGPVN 783
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1558 SA----FEAQTKLSDDLKLQKEDaqrevfLVKERlvkekrefevklATLEDIIETLEmrcTQMEEERATAYEQINK 1629
Cdd:COG1196 784 LLaieeYEELEERYDFLSEQRED------LEEAR------------ETLEEAIEEID---RETRERFLETFDAVNE 838
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1231-1806 |
9.65e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 97.31 E-value: 9.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1231 ELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVD 1310
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1311 NLKVELDKERKELAQvnsafeaqtklsddLQREKESAQQLVDNLKVELDKERKELAqvksviEAQTKLSDDLQRQKESAQ 1390
Cdd:COG1196 313 ELEERLEELEEELAE--------------LEEELEELEEELEELEEELEEAEEELE------EAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1391 QLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELA 1470
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1471 QVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKER------KELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKV 1544
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAarllllLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1545 ELEKERKELA--------KVNSAFEAQTKLSDDLKLQKedAQREVFLVKERLvkEKREFEVKLATLEDIIETLEMRCTQM 1616
Cdd:COG1196 533 EAAYEAALEAalaaalqnIVVEDDEVAAAAIEYLKAAK--AGRATFLPLDKI--RARAALAAALARGAIGAAVDLVASDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1617 EEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVEclHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLmtEIA 1696
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGR--LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL--EEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1697 EHNQVKDQLAQITDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAE 1776
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
570 580 590
....*....|....*....|....*....|
gi 386764405 1777 LCELIEFYRNRVEALERLLLASNQELEELN 1806
Cdd:COG1196 765 LERELERLEREIEALGPVNLLAIEEYEELE 794
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1234-1869 |
1.98e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 96.16 E-value: 1.98e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1234 KERKElaqvksviEAQTKLSD---DLQRekesaqqlVDNLKVELDKERKELA-QVNSAFEAQtKLSDDLQ-RQKESAQQL 1308
Cdd:COG1196 171 KERKE--------EAERKLEAteeNLER--------LEDILGELERQLEPLErQAEKAERYR-ELKEELKeLEAELLLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1309 VDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKES 1388
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1389 AQQLVDNLKVELDKERKELAKVKSVI-EAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERK 1467
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELeELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1468 ELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELE 1547
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1548 KERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREfevKLATLEDIIETLEMRCTQMEEERATAYEQI 1627
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR---GLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1628 NKLENRCQEKD---NVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKL-AEKVSKLDFVQSRLMTEIAEHNQVKD 1703
Cdd:COG1196 551 IVVEDDEVAAAaieYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvASDLREADARYYVLGDTLLGRTLVAA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1704 QLAQITDIPkvVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEF 1783
Cdd:COG1196 631 RLEAALRRA--VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1784 YRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKEryqklaldckilqakyrDAKDEIKR 1863
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE-----------------ELERELER 771
|
....*.
gi 386764405 1864 CEKKIK 1869
Cdd:COG1196 772 LEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
818-1560 |
1.21e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.58 E-value: 1.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 818 LKRELDDLRSKNEELAKQnINGIIKRNKFITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLD 897
Cdd:TIGR02168 279 LEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 898 IAQQEIKDYHVEAIRFINTIRDRLQQDFNGVN-TPQQLGTCMTEFLkmydQMEVRYEESSSLVEKLTESQAKLEMQVAEL 976
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAqLELQIASLNNEIE----RLEARLERLEDRRERLQQEIEELLKKLEEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 977 QVelenKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQkELDLRAKIIENLEASERNLSMKL 1056
Cdd:TIGR02168 434 EL----KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA-QLQARLDSLERLQENLEGFSEGV 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1057 CELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKC-----------DMEAKKN-EHLERNQNQSLTQLKEDalencVLMS 1124
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSELISVDEGYEAAIEAALggrlqavvvenLNAAKKAiAFLKQNELGRVTFLPLD-----SIKG 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1125 TKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQ------------------------------R 1174
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDnalelakklrpgyrivtldgdlvrpggvitG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1175 QKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSD 1254
Cdd:TIGR02168 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1255 DLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQT 1334
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1335 KLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAkvksvi 1414
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE------ 897
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1415 EAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVEL-DKERKELAQVKSVIEAQTKLSDDLQRQKESA 1493
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386764405 1494 QQLVDNL---KMELDKERKELAQVKSAIGAQtklSDDLECQKESVQQLVDNLKVELEKERKE-LAKVNSAF 1560
Cdd:TIGR02168 978 ENKIKELgpvNLAAIEEYEELKERYDFLTAQ---KEDLTEAKETLEEAIEEIDREARERFKDtFDQVNENF 1045
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
790-1622 |
1.37e-18 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 93.67 E-value: 1.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 790 NFLESMHIEKrfenIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNIN---GIIKRNKFITSLEVNTEKVKQYITDLEE 866
Cdd:PTZ00121 1019 DFNQNFNIEK----IEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKahvGQDEGLKPSYKDFDFDAKEDNRADEATE 1094
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 867 EAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMYD 946
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAED 1174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 947 QMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENkdtnqhsgalikqlndtIQNLEKVnaKLSEDNTVSHTVHsKLNE 1026
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEE-----------------ERKAEEA--RKAEDAKKAEAVK-KAEE 1234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1027 SllKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEhlernqn 1106
Cdd:PTZ00121 1235 A--KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD------- 1305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1107 qsltQLKEDALEncvlmSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESgqqlvDNL 1186
Cdd:PTZ00121 1306 ----EAKKKAEE-----AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA-----AEK 1371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1187 KVELEKERKELAHVNSAigaQTKLSDDLECQKESGQQLVDNLKvELEKERKELAQVKSVIEAQTKlSDDLQREKESAQQl 1266
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAE---EKKKADEAKKKAEEDKKKADELK-KAAAAKKKADEAKKKAEEKKK-ADEAKKKAEEAKK- 1445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1267 VDNLKVELDKERKELAQVNSAFEAqtKLSDDLQRQKESAQQlVDNLKVELDKERKELAQVNSAFEAQTKLsdDLQREKES 1346
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEA--KKADEAKKKAEEAKK-ADEAKKKAEEAKKKADEAKKAAEAKKKA--DEAKKAEE 1520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1347 AQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKE----RKELAKV--KSVIEAQTKL 1420
Cdd:PTZ00121 1521 AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNmalrKAEEAKKaeEARIEEVMKL 1600
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1421 SDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNL 1500
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1501 KMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQlVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQRE 1580
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK-AEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 386764405 1581 VFLVKERLVKEKREFEVKLATLEDIIETlEMRCTQMEEERAT 1622
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRKEKEAVIEEELDE-EDEKRRMEVDKKI 1800
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1113-1870 |
9.88e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 90.90 E-value: 9.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1113 KEDALENCVLMSTKLEELQAKLQE-GQQLvdsQKLELDMNRKE----LALVKSAYEAQTKLSD--DLQRQKESGQQLVDN 1185
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEkRQQL---ERLRREREKAEryqaLLKEKREYEGYELLKEkeALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1186 LKVELEKERKELAHVNSAIGAQTKLSDDLECQ-KESGQQLVDNLKVELEKERKELAQVKSVIEAqtklsddLQREKESAQ 1264
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVKEKIGELEAEIASLERSIAE-------KERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1265 QLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREK 1344
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1345 ESAQQLVDNLKVELDKERKELAQ----VKSVIEAQTKLS---DDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEaq 1417
Cdd:TIGR02169 402 NELKRELDRLQEELQRLSEELADlnaaIAGIEAKINELEeekEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD-- 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1418 tKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLV---------------------------------DNLKVELD- 1463
Cdd:TIGR02169 480 -RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLkasiqgvhgtvaqlgsvgeryataievaagnrlNNVVVEDDa 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1464 ---------KERK-------ELAQVKSVIEAQTKLSDD----------------------------LQRQKESAQQLVDN 1499
Cdd:TIGR02169 559 vakeaiellKRRKagratflPLNKMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtlVVEDIEAARRLMGK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1500 LKM-ELDKERKELAQV--------KSAIGAQTKLSDDLecqkESVQQLVDNLKVELEKERKELAKV-NSAFEAQTKLSdd 1569
Cdd:TIGR02169 639 YRMvTLEGELFEKSGAmtggsrapRGGILFSRSEPAEL----QRLRERLEGLKRELSSLQSELRRIeNRLDELSQELS-- 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1570 lklqkeDAQREVflvkERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSS-QLQVE 1648
Cdd:TIGR02169 713 ------DASRKI----GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKlEEALN 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1649 TFKVECLHHQ----------LKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDipKVVELQ 1718
Cdd:TIGR02169 783 DLEARLSHSRipeiqaelskLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK--EIENLN 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1719 HRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKN---AELCELIEFYRNRVEALERLL 1795
Cdd:TIGR02169 861 GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRkrlSELKAKLEALEEELSEIEDPK 940
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1796 LASNQELEELNSIQSNQA------EGVRDLGDTYSAAEgrqTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIK 1869
Cdd:TIGR02169 941 GEDEEIPEEELSLEDVQAelqrveEEIRALEPVNMLAI---QEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
.
gi 386764405 1870 D 1870
Cdd:TIGR02169 1018 E 1018
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1046-1694 |
2.55e-17 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 89.82 E-value: 2.55e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1046 EASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQnqsltQLKEDALEncvlmst 1125
Cdd:PTZ00121 1174 DAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAE-----EAKKDAEE------- 1241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1126 kleelqAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELahvnSAIG 1205
Cdd:PTZ00121 1242 ------AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA----KKKA 1311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1206 AQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVN 1285
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1286 SAFEAQTKLSDDLQ-----RQKESAQQLVDNLKVELDKERKELAQVNSAFEAqtKLSDDLQREKESAQQlVDNLKVELDK 1360
Cdd:PTZ00121 1392 KADEAKKKAEEDKKkadelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKK-AEEAKKKAEE 1468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1361 ERKELAQVKSVIEAqtKLSDDLQRQKESAQQLVDNLK--VELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQT 1438
Cdd:PTZ00121 1469 AKKADEAKKKAEEA--KKADEAKKKAEEAKKKADEAKkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1439 KlSDDLQ-----RQKESAQQLVDNLKVELDK-------------ERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNL 1500
Cdd:PTZ00121 1547 K-ADELKkaeelKKAEEKKKAEEAKKAEEDKnmalrkaeeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1501 KMElDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQre 1580
Cdd:PTZ00121 1626 KKA-EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-- 1702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1581 vflvKERLVKEKREFEVKLAtlEDIIETLEMRCTQMEEERATAYEQINKLEN-RCQEKDNVKSSQLQVETFKVECLHHQL 1659
Cdd:PTZ00121 1703 ----KAEELKKKEAEEKKKA--EELKKAEEENKIKAEEAKKEAEEDKKKAEEaKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
650 660 670
....*....|....*....|....*....|....*.
gi 386764405 1660 KSEMATHNSLVEDLNRKL-AEKVSKLDFVQSRLMTE 1694
Cdd:PTZ00121 1777 KEAVIEEELDEEDEKRRMeVDKKIKDIFDNFANIIE 1812
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
993-1586 |
8.23e-17 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 87.38 E-value: 8.23e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 993 IKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEAsernlsmklcELKDLKNKLKSSDEK 1072
Cdd:TIGR04523 70 INNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEV----------ELNKLEKQKKENKKN 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1073 IAQIKETY---EEQIKALQAKCDMEAKKNEHLERNQNQSLTQL--KEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLE 1147
Cdd:TIGR04523 140 IDKFLTEIkkkEKELEKLNNKYNDLKKQKEELENELNLLEKEKlnIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1148 L-DMNRKELALVKSAYEAQTKLSDdLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQ--------- 1217
Cdd:TIGR04523 220 IsELKKQNNQLKDNIEKKQQEINE-KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQlnqlkseis 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1218 ---KESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEaqtkl 1294
Cdd:TIGR04523 299 dlnNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIE----- 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1295 sdDLQRQKESAQQLVDNLKV---ELDKERKELAQVNSAFEAQTKlsdDLQREKESAQQLVDNLKVELDKERKELAQVKSV 1371
Cdd:TIGR04523 374 --KLKKENQSYKQEIKNLESqinDLESKIQNQEKLNQQKDEQIK---KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1372 IEAQTKLSDDLQRQKESAQQLVD-------NLKVELDKERKELAKvksvieaQTKLSDDLQRQKesaQQLEAQTKlsdDL 1444
Cdd:TIGR04523 449 DSVKELIIKNLDNTRESLETQLKvlsrsinKIKQNLEQKQKELKS-------KEKELKKLNEEK---KELEEKVK---DL 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1445 QRQKESAQQLVDNLKVELDKERKELAQVKSVIEA--QTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQT 1522
Cdd:TIGR04523 516 TKKISSLKEKIEKLESEKKEKESKISDLEDELNKddFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKE 595
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386764405 1523 KLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSafeaqtkLSDDLKLQKEDAQREVFLVKE 1586
Cdd:TIGR04523 596 KEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSS-------IIKNIKSKKNKLKQEVKQIKE 652
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
932-1573 |
2.55e-15 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 82.86 E-value: 2.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 932 QQLGTCMTEFLKMYDQmevryeESSSLVEKLTESQAKLEMQVAELQVELEnkdtnqhsgALIKQLNDTIQNLekvnakLS 1011
Cdd:pfam15921 216 RSLGSAISKILRELDT------EISYLKGRIFPVEDQLEALKSESQNKIE---------LLLQQHQDRIEQL------IS 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1012 EdntvsHTVH-SKLNESLLKAQKELDLRAKIIENLEASERNL-SMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQa 1089
Cdd:pfam15921 275 E-----HEVEiTGLTEKASSARSQANSIQSQLEIIQEQARNQnSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELE- 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1090 kcdmeakknehlernqnqsltqlKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNR--KELALVKsayEAQTK 1167
Cdd:pfam15921 349 -----------------------KQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKreKELSLEK---EQNKR 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1168 LSDdlqrqKESGQQL-VDNLKVELEKERKELAHVNSAIGAQTKlsddlECQKESGQQL--VDNLKVELEKERKELAQVKS 1244
Cdd:pfam15921 403 LWD-----RDTGNSItIDHLRRELDDRNMEVQRLEALLKAMKS-----ECQGQMERQMaaIQGKNESLEKVSSLTAQLES 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1245 VIEAQTKLSDDLQREK---ESAQQLVDNLKVELDKERKELAQVNSAFeaqTKLSD--DLQRQK-----------ESAQQL 1308
Cdd:pfam15921 473 TKEMLRKVVEELTAKKmtlESSERTVSDLTASLQEKERAIEATNAEI---TKLRSrvDLKLQElqhlknegdhlRNVQTE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1309 VDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQtklsDDLQRQKES 1388
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK----DAKIRELEA 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1389 AQQLVDNLKVELDKERKE-LAKVKSVIEAQTKLSDDLQRQKESAQQL-EAQTKLSDDLQRQKESAQQLVDNLKVELDKER 1466
Cdd:pfam15921 626 RVSDLELEKVKLVNAGSErLRAVKDIKQERDQLLNEVKTSRNELNSLsEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1467 KELAQVKSVIEAQ-------TKLSDDLQRQKESAQQLVDNLKME-----------------LDKERKELAQVKSAIGAQ- 1521
Cdd:pfam15921 706 SELEQTRNTLKSMegsdghaMKVAMGMQKQITAKRGQIDALQSKiqfleeamtnankekhfLKEEKNKLSQELSTVATEk 785
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 386764405 1522 TKLSDDLEC---QKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQ 1573
Cdd:pfam15921 786 NKMAGELEVlrsQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 840
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1225-1967 |
2.74e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 82.81 E-value: 2.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1225 VDNLKVELEKERKELAQVK-------SVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKlsdD 1297
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEenierldLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKE---A 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1298 LQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQlvdnlkveldkerKELAQVKSVIE-AQT 1376
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVK-------------EKIGELEAEIAsLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1377 KLSDDLQRQKESAQQLVdNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEaqtklsDDLQRQKESAQQLVD 1456
Cdd:TIGR02169 309 SIAEKERELEDAEERLA-KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL------EDLRAELEEVDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1457 NLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQ 1536
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1537 QLVDNLKVELEKERKELAKVNSAF-EAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVkLATLEDIIETLEMRCTQ 1615
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELsKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGV-HGTVAQLGSVGERYATA 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1616 ME------------EERATAYEQINKLEN--------------RCQEKDNVKSSQLQVETFKVECLHHQLKSEMATH--- 1666
Cdd:TIGR02169 541 IEvaagnrlnnvvvEDDAVAKEAIELLKRrkagratflplnkmRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKyvf 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1667 --NSLVEDLN--RKLAEKVS--KLD---FVQSRLMTeiAEHNQVK-DQLAQITDIPKVVELQHRLEAETAEREEAQNKLA 1736
Cdd:TIGR02169 621 gdTLVVEDIEaaRRLMGKYRmvTLEgelFEKSGAMT--GGSRAPRgGILFSRSEPAELQRLRERLEGLKRELSSLQSELR 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1737 VVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELiefyRNRVEALERLLLASNQELEELNS-IQSNQA-- 1813
Cdd:TIGR02169 699 RIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL----EEDLSSLEQEIENVKSELKELEArIEELEEdl 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1814 ----------------EGVRDLGDTYSAAEG---------RQTESDQDKERYQKLALDCKI--LQAKYRDAKDEIKRCEK 1866
Cdd:TIGR02169 775 hkleealndlearlshSRIPEIQAELSKLEEevsriearlREIEQKLNRLTLEKEYLEKEIqeLQEQRIDLKEQIKSIEK 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1867 KIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKEKQERDAAKsaSELEALtaqnakyEEHTRKLSNQIVRLNEKILEQQKQ 1946
Cdd:TIGR02169 855 EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE--AQLREL-------ERKIEELEAQIEKKRKRLSELKAK 925
|
810 820
....*....|....*....|....*.
gi 386764405 1947 HAIISTNLRHL-----QMQPISETKP 1967
Cdd:TIGR02169 926 LEALEEELSEIedpkgEDEEIPEEEL 951
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1026-1698 |
4.72e-15 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 81.81 E-value: 4.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1026 ESLLKAQKELDLRAKIIENLE-ASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCdmeAKKNEHLERN 1104
Cdd:pfam12128 251 NTLESAELRLSHLHFGYKSDEtLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAV---AKDRSELEAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1105 QNQSLTQLKEDA------LENCVLMSTKLEEL--------------QAKLQEGQQLVDSQ-KLELDMNRKELALVKSAYE 1163
Cdd:pfam12128 328 EDQHGAFLDADIetaaadQEQLPSWQSELENLeerlkaltgkhqdvTAKYNRRRSKIKEQnNRDIAGIKDKLAKIREARD 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1164 AQ-TKLSDDLQRQKESGQQLVDNLKVELEKERKELAhvnSAIG------AQTKLSDDLECQKESGQQLVDNLKVELEKER 1236
Cdd:pfam12128 408 RQlAVAEDDLQALESELREQLEAGKLEFNEEEYRLK---SRLGelklrlNQATATPELLLQLENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1237 KELaqvksvieaqtklsDDLQREKESAQQLVDNLKVELDKERKELAQVNSAF-EAQTKLSddlqrqkESAQQLVDNLKVE 1315
Cdd:pfam12128 485 AEV--------------ERLQSELRQARKRRDQASEALRQASRRLEERQSALdELELQLF-------PQAGTLLHFLRKE 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1316 LDKERKELAQV-NSAFEAQTKLSDDLQREKESAQQLVDNLKVELDK-ERKELAQVKSVIEAQ-TKLSDDLQRQKESAQQL 1392
Cdd:pfam12128 544 APDWEQSIGKViSPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRiDVPEWAASEEELRERlDKAEEALQSAREKQAAA 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1393 VDNL---KVELDKERKELAKVKSVIEAQtklSDDLQRQKESAQQLEaqtklsDDLQRQKESAQQLVDNLKVELDKERKEL 1469
Cdd:pfam12128 624 EEQLvqaNGELEKASREETFARTALKNA---RLDLRRLFDEKQSEK------DKKNKALAERKDSANERLNSLEAQLKQL 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1470 A-QVKSVIEAQTKLSDDLQRQKESA-QQLVDNLKMELDKERKELAQVKSAIGAQTKlsddlECQKESVQQL----VDNLK 1543
Cdd:pfam12128 695 DkKHQAWLEEQKEQKREARTEKQAYwQVVEGALDAQLALLKAAIAARRSGAKAELK-----ALETWYKRDLaslgVDPDV 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1544 V-ELEKERKEL-AKVNSAFEAQTKLsddlkLQKEDAQREVFLV-KERLVKEKREFEVKLATLED----IIETLEMRCTQM 1616
Cdd:pfam12128 770 IaKLKREIRTLeRKIERIAVRRQEV-----LRYFDWYQETWLQrRPRLATQLSNIERAISELQQqlarLIADTKLRRAKL 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1617 EEERATAYEQINKLEnrcQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIA 1696
Cdd:pfam12128 845 EMERKASEKQQVRLS---ENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIA 921
|
..
gi 386764405 1697 EH 1698
Cdd:pfam12128 922 DH 923
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
942-1697 |
2.01e-14 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 80.02 E-value: 2.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 942 LKMYDQMEVRYEESSSLVEKLTESQAKLEmqvaELQVELENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHtvh 1021
Cdd:pfam02463 202 LKEQAKKALEYYQLKEKLELEEEYLLYLD----YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKEN--- 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1022 sKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHL 1101
Cdd:pfam02463 275 -KEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREA 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1102 ERNQNQSLTQLKEDALEncvlmstKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSddlqRQKESGQQ 1181
Cdd:pfam02463 354 EEEEEEELEKLQEKLEQ-------LEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA----RQLEDLLK 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1182 LVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKvelEKERKELAQVKSVIEAQTKLSDDLQREKE 1261
Cdd:pfam02463 423 EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS---EDLLKETQLVKLQEQLELLLSRQKLEERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1262 SAQQLVDNLKVELDK--ERKELAQVNSAFEAQTKLS--DDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLS 1337
Cdd:pfam02463 500 QKESKARSGLKVLLAliKDGVGGRIISAHGRLGDLGvaVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1338 DDLQREKESAqQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQ 1417
Cdd:pfam02463 580 LRLLIPKLKL-PLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGL 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1418 TKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLV 1497
Cdd:pfam02463 659 AEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEEL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1498 DNLKMELDKERKELAQVK-SAIGAQTKLSDDLECQKESVQQLVDN--LKVELEKERKELAKVNSAFEAQTKLSDDLKLQK 1574
Cdd:pfam02463 739 KLLKQKIDEEEEEEEKSRlKKEEKEEEKSELSLKEKELAEEREKTekLKVEEEKEEKLKAQEEELRALEEELKEEAELLE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1575 EDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVEC 1654
Cdd:pfam02463 819 EEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEE 898
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 386764405 1655 LhhQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAE 1697
Cdd:pfam02463 899 K--KELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEE 939
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
949-1661 |
3.14e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 79.34 E-value: 3.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 949 EVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDtnqhsgALIKQLNDTIQNLEKVNAKLSEDntvshtVHSKLNESL 1028
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLT------EEISELEKRLEEIEQLLEELNKK------IKDLGEEEQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1029 LKAQKEL-DLRAKIienlEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAkcdmEAKKNEHLErnqnq 1107
Cdd:TIGR02169 290 LRVKEKIgELEAEI----ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLT----- 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1108 slTQLKEDAlencvlmsTKLEELQAKLQEGQQLVDSQKLELDMNRKELalvksayeaqtklsDDLQRQKESGQQLVDNLK 1187
Cdd:TIGR02169 357 --EEYAELK--------EELEDLRAELEEVDKEFAETRDELKDYREKL--------------EKLKREINELKRELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1188 VELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLV 1267
Cdd:TIGR02169 413 EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1268 DNLKVELDKERKElaqVNSAFEAQTKLSDDLQRQKESAQQLV------------------DNLKVELDKERKE----LAQ 1325
Cdd:TIGR02169 493 AEAEAQARASEER---VRGGRAVEEVLKASIQGVHGTVAQLGsvgeryataievaagnrlNNVVVEDDAVAKEaielLKR 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1326 VN---SAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLqrqkESAQQLVDNLK-VELD 1401
Cdd:TIGR02169 570 RKagrATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDI----EAARRLMGKYRmVTLE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1402 KERKELA--------KVKSVIEAQTKLSDDLQRQKESAQQLEaqtKLSDDLQRQKESAQQLVDNLKVELDKE-------R 1466
Cdd:TIGR02169 646 GELFEKSgamtggsrAPRGGILFSRSEPAELQRLRERLEGLK---RELSSLQSELRRIENRLDELSQELSDAsrkigeiE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1467 KELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLEcQKESVQQL--VDNLKV 1544
Cdd:TIGR02169 723 KEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE-ARLSHSRIpeIQAELS 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1545 ELEKERKELAKVNSAFEAQTK------------------LSDDLKLQKEDAQREVflvkERLVKEKREFEVKLATLEDII 1606
Cdd:TIGR02169 802 KLEEEVSRIEARLREIEQKLNrltlekeylekeiqelqeQRIDLKEQIKSIEKEI----ENLNGKKEELEEELEELEAAL 877
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 386764405 1607 ETLEMRCTQMEEERATAYEQINKLENRCQE---KDNVKSSQLQVETFKVECLHHQLKS 1661
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQLRELERKIEEleaQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
951-1705 |
1.06e-13 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 77.32 E-value: 1.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 951 RYEESSSLVEKLTESqAKLEMQVAELQVELENKDTNQhsgaLIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNEsLLK 1030
Cdd:TIGR00618 177 QYTQLALMEFAKKKS-LHGKAELLTLRSQLLTLCTPC----MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQ-KRE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1031 AQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSS---------DEKIAQIKETYEEQIKALQAKCDMEAKKNEHL 1101
Cdd:TIGR00618 251 AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRArkaaplaahIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKR 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1102 ERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQ 1181
Cdd:TIGR00618 331 AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1182 LVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELaqvKSVIEAQTKLSDDLQREKE 1261
Cdd:TIGR00618 411 TIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL---KEREQQLQTKEQIHLQETR 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1262 SaQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQ 1341
Cdd:TIGR00618 488 K-KAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1342 REKESAQ---QLVDNLKVELDKERKELAQVKSVIEAQTKLSDDL----QRQKESAQQLVDNLKVELDKER--KELAKVKS 1412
Cdd:TIGR00618 567 EIQQSFSiltQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLaceqHALLRKLQPEQDLQDVRLHLQQcsQELALKLT 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1413 VIEaQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQlvdNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKES 1492
Cdd:TIGR00618 647 ALH-ALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQ---SEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1493 AQQLVDNLKMELDKERKELAQVKSAIGAQ--TKLSDDLECQKESVQQLVDNLKV--ELEKERKELAKVNSAFEAQTKLsd 1568
Cdd:TIGR00618 723 IENASSSLGSDLAAREDALNQSLKELMHQarTVLKARTEAHFNNNEEVTAALQTgaELSHLAAEIQFFNRLREEDTHL-- 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1569 dLKLQKEDAQREVflvkerlvkeKREFEVKLATLEDIIETLEMRCTQMEEERATAYE---QINKLENRCQEKDnvkssQL 1645
Cdd:TIGR00618 801 -LKTLEAEIGQEI----------PSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEithQLLKYEECSKQLA-----QL 864
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1646 QVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQL 1705
Cdd:TIGR00618 865 TQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHEITLYANVRLANQSEGRFHGRYADSH 924
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1360-1986 |
1.07e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1360 KERKElaqvksviEAQTKLS---------DDLQRQKESaqQLvDNLKVELDKERK--ELAKVKSVIEAQTKLSDDLQRQK 1428
Cdd:COG1196 171 KERKE--------EAERKLEateenlerlEDILGELER--QL-EPLERQAEKAERyrELKEELKELEAELLLLKLRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1429 ESAQQLEAQTKLSDDLQRQKESAQQL---VDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELD 1505
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELeaeLEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1506 KERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQRevflvk 1585
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR------ 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1586 erlvkEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLEnrcQEKDNVKSSQLQVETfkvecLHHQLKSEMAT 1665
Cdd:COG1196 394 -----AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE---EEEEEEEEALEEAAE-----EEAELEEEEEA 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1666 HNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQHRLEAETAEREEaqnkLAVVTGRLDEI 1745
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA----VAVLIGVEAAY 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1746 TRELDNARLEHGAQILRMEETAREvgnknaelcELIEFYRNRveALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSA 1825
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAA---------AAIEYLKAA--KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1826 AEGRQTESDQDKERYQKLALDckILQAKYRDAKDEIKRCEKKIKDQRLEMEGKLE--KMKNKMRSLYTAEVTRMKEKQER 1903
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRT--LVAARLEAALRRAVTLAGRLREVTLEGEGGSAggSLTGGSRRELLAALLEAEAELEE 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1904 DAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLRHLQMQPISETKPSSTTLTVSSSSSAPND 1983
Cdd:COG1196 684 LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
...
gi 386764405 1984 DWQ 1986
Cdd:COG1196 764 ELE 766
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
797-1605 |
3.66e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.87 E-value: 3.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 797 IEKRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQningiikrnkfitslevntekvkqyITDL-EEEAFKRKQKV 875
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK-------------------------IKDLgEEEQLRVKEKI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 876 VQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfintiRDRLQQDFngvntpqqlgtcmteflkmyDQMEVRYEES 955
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAE--------IDKLLAEI--------------------EELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 956 SSLVEKLTESQAKLEMQVAELQVELENKDTNqhSGALIKQLNDTIQNLEKVNAKLSEDNTvshTVHSKLNESLLKAQKEL 1035
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKE--FAETRDELKDYREKLEKLKREINELKR---ELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1036 DLRAKI---IENLEASERNLSMKLCELKDLKNKLKSsdekIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQL 1112
Cdd:TIGR02169 424 DLNAAIagiEAKINELEEEKEDKALEIKKQEWKLEQ----LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1113 KedALENCVLMSTKLEELqakLQEGQQLVDSQKLELDMNRKELAL-VKSAYEAQTK---LSDD---------LQRQKESG 1179
Cdd:TIGR02169 500 R--ASEERVRGGRAVEEV---LKASIQGVHGTVAQLGSVGERYATaIEVAAGNRLNnvvVEDDavakeaielLKRRKAGR 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1180 QQLVDNLKVELEKERKELAHVNSAIGAQTKLSD-DLECQKESGQQLVDNLKVE-LEKERKELAQVKSVieaqtKLSDDLq 1257
Cdd:TIGR02169 575 ATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEfDPKYEPAFKYVFGDTLVVEdIEAARRLMGKYRMV-----TLEGEL- 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1258 REKESA----QQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKE-------RKELAQV 1326
Cdd:TIGR02169 649 FEKSGAmtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAsrkigeiEKEIEQL 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1327 NSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRqkESAQQLVDNLKVELDKERKE 1406
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEE 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1407 LAKVKSVIEAQTKLSDDLQRQKESAQQlEAQTKLS--DDLQRQKESAQQLVDNLKVELDKERKEL----AQVKSVIEAQT 1480
Cdd:TIGR02169 807 VSRIEARLREIEQKLNRLTLEKEYLEK-EIQELQEqrIDLKEQIKSIEKEIENLNGKKEELEEELeeleAALRDLESRLG 885
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1481 KLS---DDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQ----TKLSDDLECQKESVQQLVDNLKVELEKERKE- 1552
Cdd:TIGR02169 886 DLKkerDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALeeelSEIEDPKGEDEEIPEEELSLEDVQAELQRVEe 965
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386764405 1553 ----LAKVNSA----FEAQTKLSDDLKLQKEDAQREVFLVKERLVK-EKREFEVKLATLEDI 1605
Cdd:TIGR02169 966 eiraLEPVNMLaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEyEKKKREVFMEAFEAI 1027
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1030-1716 |
3.76e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 75.54 E-value: 3.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1030 KAQKELDLRAKIIE--NLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKC---DMEAKKNEHLERN 1104
Cdd:pfam15921 56 KYEVELDSPRKIIAypGKEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLqemQMERDAMADIRRR 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1105 QNQSLTQLKeDALENCVlmstklEELQAKLQEGQQLVDSQKLELDMNRK-ELALVKSAYEAQTKLSDdlqRQKESGQQLv 1183
Cdd:pfam15921 136 ESQSQEDLR-NQLQNTV------HELEAAKCLKEDMLEDSNTQIEQLRKmMLSHEGVLQEIRSILVD---FEEASGKKI- 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1184 dnlkveLEKERKELAHVNSAIGAQTKLSDDLECQkesgqqlVDNLKVELEKERKELAQVKSviEAQTKLSDDLQREKESA 1263
Cdd:pfam15921 205 ------YEHDSMSTMHFRSLGSAISKILRELDTE-------ISYLKGRIFPVEDQLEALKS--ESQNKIELLLQQHQDRI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1264 QQLVDNLKVEL----DKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTklsDD 1339
Cdd:pfam15921 270 EQLISEHEVEItgltEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI---EE 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1340 LQREKESAQQLVDNLKVELDKERKELA----QVKSVIEAQTKLSDDLQRQKESAQQL----------VDNLKVELDKERK 1405
Cdd:pfam15921 347 LEKQLVLANSELTEARTERDQFSQESGnlddQLQKLLADLHKREKELSLEKEQNKRLwdrdtgnsitIDHLRRELDDRNM 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1406 ELAKVKSVIEA-QTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSD 1484
Cdd:pfam15921 427 EVQRLEALLKAmKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQ 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1485 DLQRQKESAQQLVDNLKMELDKERKELAQVKSAigaqtklSDDLecqkESVQQLVDNLKVELEKERKELAKVNSAFEAQT 1564
Cdd:pfam15921 507 EKERAIEATNAEITKLRSRVDLKLQELQHLKNE-------GDHL----RNVQTECEALKLQMAEKDKVIEILRQQIENMT 575
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1565 KLSDDL-----KLQKEDAQREVFLVKERLvkEKREFEVKLATLEDIIETLEMRCTQMEEERAtayEQINKLENRCQEKDN 1639
Cdd:pfam15921 576 QLVGQHgrtagAMQVEKAQLEKEINDRRL--ELQEFKILKDKKDAKIRELEARVSDLELEKV---KLVNAGSERLRAVKD 650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1640 VKSSQLQvetfkvecLHHQLKSEMATHNSLVED---LNRKLAEKVSKLDFVQSRLMTEIaehNQVKDQLAQITDIPKVVE 1716
Cdd:pfam15921 651 IKQERDQ--------LLNEVKTSRNELNSLSEDyevLKRNFRNKSEEMETTTNKLKMQL---KSAQSELEQTRNTLKSME 719
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
816-1527 |
3.86e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 75.44 E-value: 3.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 816 DDLKRELDDLRS--KNEELAKQNI-NGIIKRNKFITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEM 892
Cdd:TIGR04523 36 KQLEKKLKTIKNelKNKEKELKNLdKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 893 AQRLDIAQQEIKdyhveairfintirdRLQQDFNGVNtpQQLGTCMTEFLKMydqmevryeesSSLVEKLTESQAKLEMQ 972
Cdd:TIGR04523 116 KEQKNKLEVELN---------------KLEKQKKENK--KNIDKFLTEIKKK-----------EKELEKLNNKYNDLKKQ 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 973 VAELQVELEnkdtnqhsgALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSK--LNESLLKAQKELDLRAKIIENleaser 1050
Cdd:TIGR04523 168 KEELENELN---------LLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKiqKNKSLESQISELKKQNNQLKD------ 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1051 NLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKcDMEAKKNEHLERNQNQSLTQLKedalencvlmsTKLEEL 1130
Cdd:TIGR04523 233 NIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK-QKELEQNNKKIKELEKQLNQLK-----------SEISDL 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1131 qaKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIgaqtkl 1210
Cdd:TIGR04523 301 --NNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEI------ 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1211 sDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEA 1290
Cdd:TIGR04523 373 -EKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSV 451
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1291 QTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKS 1370
Cdd:TIGR04523 452 KELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1371 VI-EAQTKLSDDLQRQKESAQQLV-DNLKVELDKERKELAKVKsviEAQTKLSDDLQRQKESAQQLEAQTKlsdDLQRQK 1448
Cdd:TIGR04523 532 EKkEKESKISDLEDELNKDDFELKkENLEKEIDEKNKEIEELK---QTQKSLKKKQEEKQELIDQKEKEKK---DLIKEI 605
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386764405 1449 ESAQQLVDNLKVELDKERKELAQVKSVIeaqtklsDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDD 1527
Cdd:TIGR04523 606 EEKEKKISSLEKELEKAKKENEKLSSII-------KNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDD 677
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1169-1756 |
4.69e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 75.06 E-value: 4.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1169 SDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVK---SV 1245
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllSN 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1246 IEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAF-EAQTKLSDDLQRQKESAQQLVDNLKvELDKERKELA 1324
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIsNTQTQLNQLKDEQNKIKKQLSEKQK-ELEQNNKKIK 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1325 QVNSAF-EAQTKLSDdLQREKEsaQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKE 1403
Cdd:TIGR04523 285 ELEKQLnQLKSEISD-LNNQKE--QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEK 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1404 RKELAKVKSVIEaqtKLSDDLQRQKESAQQLEAQ-TKLSDDLQRQKESAQQLVDNLKVeldkerkelaqvksvieaqtkl 1482
Cdd:TIGR04523 362 QRELEEKQNEIE---KLKKENQSYKQEIKNLESQiNDLESKIQNQEKLNQQKDEQIKK---------------------- 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1483 sddLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEA 1562
Cdd:TIGR04523 417 ---LQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1563 QTKLSDDLKlqkedaqrevflvkerlvKEKREFEVKLATLEDIIETLEmrctqmeeeratayEQINKLENRCQEKDNVKS 1642
Cdd:TIGR04523 494 KEKELKKLN------------------EEKKELEEKVKDLTKKISSLK--------------EKIEKLESEKKEKESKIS 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1643 sqlqvetfkveclhhQLKSEMathNSLVEDLNRKLAEKvskldfvqsrlmtEIAEHNQVKDQLAQITD--IPKVVELQHR 1720
Cdd:TIGR04523 542 ---------------DLEDEL---NKDDFELKKENLEK-------------EIDEKNKEIEELKQTQKslKKKQEEKQEL 590
|
570 580 590
....*....|....*....|....*....|....*.
gi 386764405 1721 LEAETAEREEAQNKLAVVTGRLDEITRELDNARLEH 1756
Cdd:TIGR04523 591 IDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN 626
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1169-1929 |
5.72e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 75.18 E-value: 5.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1169 SDDLQRQKESGQQLVDNLKvELEKERKelAHVNSAIGAQTKLSDDLECQKEsgqqlvDNLKVELEKERKELAQvkSVIEA 1248
Cdd:PTZ00121 1038 NDDVLKEKDIIDEDIDGNH-EGKAEAK--AHVGQDEGLKPSYKDFDFDAKE------DNRADEATEEAFGKAE--EAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1249 QTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNS 1328
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE 1186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1329 AFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELA 1408
Cdd:PTZ00121 1187 VRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFA 1266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1409 KVKSVIEAQTKLSDDLQRQKESAQQLEaQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSviEAQTKLSDDLQR 1488
Cdd:PTZ00121 1267 RRQAAIKAEEARKADELKKAEEKKKAD-EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKA--DAAKKKAEEAKK 1343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1489 QKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQlVDNLKVELEKERKELAKVNSAFEAQTKlSD 1568
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK-ADEAKKKAEEDKKKADELKKAAAAKKK-AD 1421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1569 DLKLQKEDAQREVFLVKERLVKEKREFEVKLATlediietlEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVE 1648
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE--------EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1649 TFKVECLHHQLKSEMATHnslVEDLNRklAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQHRLEAETAER 1728
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKK---ADEAKK--AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE 1568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1729 EEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAR-------EVGNKNAELCELIEFYRNRVEALERLLLASNQE 1801
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKaeeakkaEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1802 LEEL------NSIQSNQaEGVRDLGDTYSAAEGRQTESDQDK--------ERYQKLALDCKILQAKYRDAKDEIKRCEKK 1867
Cdd:PTZ00121 1649 AEELkkaeeeNKIKAAE-EAKKAEEDKKKAEEAKKAEEDEKKaaealkkeAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764405 1868 IKDQRLEMEGKLEKMKNKMRSLYTAE-----VTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKL 1929
Cdd:PTZ00121 1728 NKIKAEEAKKEAEEDKKKAEEAKKDEeekkkIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1247-1966 |
5.96e-13 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 74.76 E-value: 5.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1247 EAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAqqlvdNLKVELD-KERKELAQ 1325
Cdd:pfam05483 74 EGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKV-----SLKLEEEiQENKDLIK 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1326 VNSAFEAQTKL-----------SDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIE-AQTKLSDDLQRQKESAQQLV 1393
Cdd:pfam05483 149 ENNATRHLCNLlketcarsaekTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAEnARLEMHFKLKEDHEKIQHLE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1394 DNLKVEL-DKERKELAKVKSVIEAQTKLSD---DLQRQKESAQQLEAQTKLSDDLQRQKESAQqlvDNLKVELDKERKEL 1469
Cdd:pfam05483 229 EEYKKEInDKEKQVSLLLIQITEKENKMKDltfLLEESRDKANQLEEKTKLQDENLKELIEKK---DHLTKELEDIKMSL 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1470 AQVKSvieAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKE 1549
Cdd:pfam05483 306 QRSMS---TQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKII 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1550 RKELAKVNSAFEAQTKLSDDLKLQKEDAqREVFLVKERLVKEKREFevklatlEDIIETLEMRCTQMEEERATAYEQINK 1629
Cdd:pfam05483 383 TMELQKKSSELEEMTKFKNNKEVELEEL-KKILAEDEKLLDEKKQF-------EKIAEELKGKEQELIFLLQAREKEIHD 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1630 LENRCQEKDNVKSSQL-QVETFKVECLHHQLKS-EMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQ 1707
Cdd:pfam05483 455 LEIQLTAIKTSEEHYLkEVEDLKTELEKEKLKNiELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLK 534
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1708 ITDIPKVVELQHRleaetaereeaqnklavvtGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNR 1787
Cdd:pfam05483 535 QIENLEEKEMNLR-------------------DELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENK 595
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1788 VEALERLLLASNQELEELNsiQSNQAEGVRdlgdtySAAEGRQTESDQDKerYQKLALDCKILQAKYRDAKDEIkrcEKK 1867
Cdd:pfam05483 596 CNNLKKQIENKNKNIEELH--QENKALKKK------GSAENKQLNAYEIK--VNKLELELASAKQKFEEIIDNY---QKE 662
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1868 IKDQRLEMEGKLEKMKnKMRSLYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQH 1947
Cdd:pfam05483 663 IEDKKISEEKLLEEVE-KAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAK 741
|
730
....*....|....*....
gi 386764405 1948 AIISTNLRHLQMQPISETK 1966
Cdd:pfam05483 742 AALEIELSNIKAELLSLKK 760
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1073-1630 |
6.47e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 74.95 E-value: 6.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1073 IAQIKETYEEQIKALQakcdmeakKNEHLE--RNQNQSLTQLKEDALENCVLMST-KLEELQAKLQEGQQLVDSQKLELD 1149
Cdd:COG4913 234 FDDLERAHEALEDARE--------QIELLEpiRELAERYAAARERLAELEYLRAAlRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1150 MNRKELALVKSAYEAQTKLSDDLQRQK-ESGQQLVDNLKVELEKERKELAHVN----------SAIGAQTKLS-DDLECQ 1217
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERLERELEERErrrarleallAALGLPLPASaEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1218 KESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELA--------------- 1282
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAealgldeaelpfvge 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1283 --QVNSAFEA-------------------------------QTKL------------SDDLQRQKESAQQLVDNLKVE-- 1315
Cdd:COG4913 466 liEVRPEEERwrgaiervlggfaltllvppehyaaalrwvnRLHLrgrlvyervrtgLPDPERPRLDPDSLAGKLDFKph 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1316 -----LDKE---RKELAQVNSAFE-----------AQTKLS------DDLQREKE------SAQQLVDNLKVELDKERKE 1364
Cdd:COG4913 546 pfrawLEAElgrRFDYVCVDSPEElrrhpraitraGQVKGNgtrhekDDRRRIRSryvlgfDNRAKLAALEAELAELEEE 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1365 LAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKE--RKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTklsD 1442
Cdd:COG4913 626 LAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVAsaEREIAELEAELERLDASSDDLAALEEQLEELEAEL---E 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1443 DLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQkesaqqlvdnlkmELDKERKELAQvksaIGAQT 1522
Cdd:COG4913 703 ELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA-------------LLEERFAAALG----DAVER 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1523 KLSDDLECQKESVQQLVDNLKVELEKERKElakVNSAFEAQTK-LSDDLKLQKEDAQREVFLVKERLVkekrEFEVKLAT 1601
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMRA---FNREWPAETAdLDADLESLPEYLALLDRLEEDGLP----EYEERFKE 838
|
650 660 670
....*....|....*....|....*....|.
gi 386764405 1602 L--EDIIETLEMRCTQMEEERATAYEQINKL 1630
Cdd:COG4913 839 LlnENSIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
850-1511 |
1.04e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 1.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 850 LEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDfngvn 929
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR----- 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 930 tpqqlgtcmteflkmyDQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELEnkdtnqhsgALIKQLNDTIQNLEKVNAK 1009
Cdd:COG1196 312 ----------------RELEERLEELEEELAELEEELEELEEELEELEEELE---------EAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1010 LSEdntvshtvhskLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQA 1089
Cdd:COG1196 367 LLE-----------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1090 KCDMEAKKNEHLERNQNQSLTQLKEDALEncvlmstkLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYE-AQTKL 1168
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLEL--------LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAdYEGFL 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1169 SDDLQRQKESGQQLVDN-LKVELEKERKELAHVNSAIGAQtkLSDDLECQKESGQQLVDNLKVELEKERKELaqvksvie 1247
Cdd:COG1196 508 EGVKAALLLAGLRGLAGaVAVLIGVEAAYEAALEAALAAA--LQNIVVEDDEVAAAAIEYLKAAKAGRATFL-------- 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1248 AQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVN 1327
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGS 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1328 SAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKEL 1407
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1408 akvksvieaqtklsddLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDK----------ERKELAQVKSVIE 1477
Cdd:COG1196 738 ----------------LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllaieEYEELEERYDFLS 801
|
650 660 670
....*....|....*....|....*....|....
gi 386764405 1478 AQtklSDDLQRQKESAQQLVDnlkmELDKERKEL 1511
Cdd:COG1196 802 EQ---REDLEEARETLEEAIE----EIDRETRER 828
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1231-1954 |
2.07e-12 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 73.08 E-value: 2.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1231 ELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQ-VNSAFEAQTKLSDDLQRQKESAQQLV 1309
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLlYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1310 DNLKVELDKERKELAQVNSafeaqtklsddLQREKESAQQLVDNLKVELDKERKELAQVKsvieaqtklsDDLQRQKESA 1389
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLK-----------ENKEEEKEKKLQEEELKLLAKEEEELKSEL----------LKLERRKVDD 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1390 QQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKEsaqqlvDNLKVELDKERKEL 1469
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLE------EELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1470 AQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGaqtklsDDLECQKESVQQLVDNLKVELEKE 1549
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE------ESIELKQGKLTEEKEELEKQELKL 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1550 RKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEkREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINK 1629
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKE-SKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVE 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1630 LENRcqekDNVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQIT 1709
Cdd:pfam02463 540 NYKV----AISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1710 DIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITREL-----DNARLEHGAQILRMEETAREVGNKNAELCELIEFY 1784
Cdd:pfam02463 616 DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEeglaeKSEVKASLSELTKELLEIQELQEKAESELAKEEIL 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1785 RNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSA-AEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKR 1863
Cdd:pfam02463 696 RRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEeLKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKE 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1864 CEKKIKDQRLEmegKLEKMKNKMRSLYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLsnqivRLNEKILEQ 1943
Cdd:pfam02463 776 LAEEREKTEKL---KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEEL-----ALELKEEQK 847
|
730
....*....|.
gi 386764405 1944 QKQHAIISTNL 1954
Cdd:pfam02463 848 LEKLAEEELER 858
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1281-1512 |
5.49e-12 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 70.18 E-value: 5.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1281 LAQVNSAFEAQTKLsDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDK 1360
Cdd:COG4942 16 AAQADAAAEAEAEL-EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1361 ERKELAQVKSVIEAQTKLSDDLQRQkeSAQQLVDNLKVELDKERKeLAKVKSVIEAQTKLSDDLQRQKESAQQLEAQ-TK 1439
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQ--PPLALLLSPEDFLDAVRR-LQYLKYLAPARREQAEELRADLAELAALRAElEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386764405 1440 LSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELA 1512
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
947-1943 |
5.68e-12 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 71.74 E-value: 5.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 947 QMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTNQH--------SGALIKQLNDTIQNLEKVNAKLSEDNTVSH 1018
Cdd:pfam01576 79 ELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQklqlekvtTEAKIKKLEEDILLLEDQNSKLSKERKLLE 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1019 TVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKN 1098
Cdd:pfam01576 159 ERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQL 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1099 EHLERNQNQSLTQLKEDALENCVLMStKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEA-QTKLSDDL----- 1172
Cdd:pfam01576 239 AKKEEELQAALARLEEETAQKNNALK-KIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAlKTELEDTLdttaa 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1173 -QRQKESGQQLVDNLKVELEKERK-------ELAHVNSAigAQTKLSDDLEcQKESGQQLVDNLKVELEKERKELaqvks 1244
Cdd:pfam01576 318 qQELRSKREQEVTELKKALEEETRsheaqlqEMRQKHTQ--ALEELTEQLE-QAKRNKANLEKAKQALESENAEL----- 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1245 vieaQTKLSDDLQREKESAQqlvdnlkveldKERKELAQVNsafEAQTKLSDDlQRQKESAQQLVDNLKVELDKERKELA 1324
Cdd:pfam01576 390 ----QAELRTLQQAKQDSEH-----------KRKKLEGQLQ---ELQARLSES-ERQRAELAEKLSKLQSELESVSSLLN 450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1325 QVNSAFEAQTKLSDDLQREKESAQQLvdnLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQL---VDNLKVELD 1401
Cdd:pfam01576 451 EAEGKNIKLSKDVSSLESQLQDTQEL---LQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVerqLSTLQAQLS 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1402 KERKELAKVKSVIEAQTKLSDDLQRQKESA-QQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERkelaqvksvieaqt 1480
Cdd:pfam01576 528 DMKKKLEEDAGTLEALEEGKKRLQRELEALtQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQR-------------- 593
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1481 klsddlqrqkesaqQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKE---RKELAKVN 1557
Cdd:pfam01576 594 --------------QLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEAleaKEELERTN 659
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1558 SAFEAQTklsDDLKLQKEDAQREVflvkERLVKEKREFEVKLAtlediietlEMRcTQMEEeratayeqinkLENRCQEK 1637
Cdd:pfam01576 660 KQLRAEM---EDLVSSKDDVGKNV----HELERSKRALEQQVE---------EMK-TQLEE-----------LEDELQAT 711
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1638 DNVKssqLQVETfKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDfvqsrlmteiAEHNQVKDQLAQITDIPKVVE- 1716
Cdd:pfam01576 712 EDAK---LRLEV-NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELE----------AELEDERKQRAQAVAAKKKLEl 777
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1717 ----LQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEfyrnRVEALE 1792
Cdd:pfam01576 778 dlkeLEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQE----DLAASE 853
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1793 RLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGR-----------QTESDQDKERYQKLALDCKILQAKY---RDAK 1858
Cdd:pfam01576 854 RARRQAQQERDELADEIASGASGKSALQDEKRRLEARiaqleeeleeeQSNTELLNDRLRKSTLQVEQLTTELaaeRSTS 933
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1859 DEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKekqerdaAKSASELEALTAqnakyEEHTRKLSNQIVRLNE 1938
Cdd:pfam01576 934 QKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAALE-------AKIAQLEEQLEQ-----ESRERQAANKLVRRTE 1001
|
....*
gi 386764405 1939 KILEQ 1943
Cdd:pfam01576 1002 KKLKE 1006
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1153-1896 |
8.41e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.33 E-value: 8.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1153 KELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVEL 1232
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAED 1174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1233 EKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNL 1312
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEI 1254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1313 KVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDK----------ERKELAQVKSVIEAQTKLSDDL 1382
Cdd:PTZ00121 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKkadeakkkaeEAKKADEAKKKAEEAKKKADAA 1334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1383 QRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKvEL 1462
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK-KA 1413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1463 DKERKELAQVKSVIEAQTKlSDDLQRQKESAQQlVDNLKMELDKERKELAQVKSAigAQTKLSDDLECQKESVQQlVDNL 1542
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKK-ADEAKKKAEEAKK-ADEAKKKAEEAKKAEEAKKKA--EEAKKADEAKKKAEEAKK-ADEA 1488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1543 KVELEKERKELAKVNSAFEAQTKlSDDLKLQKEDAQREvflvKERLVKEKREFEvKLATLEDIIETLEMRctQMEEERAT 1622
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKK-ADEAKKAEEAKKAD----EAKKAEEAKKAD-EAKKAEEKKKADELK--KAEELKKA 1560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1623 ayEQINKLENRCQEKDNvKSSQLQvetfKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKldfvqsrlmteiAEHNQVK 1702
Cdd:PTZ00121 1561 --EEKKKAEEAKKAEED-KNMALR----KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK------------AEEAKIK 1621
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1703 -DQLAQITDIPKVVELQHRleaetaereeaqnklavvtgRLDEITRELDNARLEHGAQILRMEETAR---EVGNKNAELC 1778
Cdd:PTZ00121 1622 aEELKKAEEEKKKVEQLKK--------------------KEAEEKKKAEELKKAEEENKIKAAEEAKkaeEDKKKAEEAK 1681
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1779 ELIEFYRNRVEALERlllaSNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDK---ERYQKLALDCKILQAKYR 1855
Cdd:PTZ00121 1682 KAEEDEKKAAEALKK----EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKkeaEEDKKKAEEAKKDEEEKK 1757
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 386764405 1856 DAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTR 1896
Cdd:PTZ00121 1758 KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
576-1365 |
9.55e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 9.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 576 LELDNERLNDKCAELKSIIDRGDQHLADINLQLIEKEKQ--------------IKDVGAEIQELRKRNINLENMLSQIAD 641
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEieelqkelyalaneISRLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 642 KEASAASHAQHLKQCGELLRAKYEVCRNELIAKNAAQDELVrmmmvpdgETLNGRVRQLIDLEMMHDEHNKMYAQMLKQL 721
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE--------AELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 722 NELSAKhdnmthshldfVKRTEIELETKNAQImafdehnnhfDRFLTRIFTLLR--SRNCPKSTTMGSATNFLESMHIEK 799
Cdd:TIGR02168 396 ASLNNE-----------IERLEARLERLEDRR----------ERLQQEIEELLKklEEAELKELQAELEELEEELEELQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 800 RFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQningiikrnkfITSLEVNTEKVKQYiTDLEEEAFKRKQKVVQLE 879
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQAR-----------LDSLERLQENLEGF-SEGVKALLKNQSGLSGIL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 880 NTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfintirDRLQQDFNGVNTPQQLGTCMTEFLKMYDQMEVRYEESSSLV 959
Cdd:TIGR02168 523 GVLSELISVDEGYEAAIEAALGGRLQAVVV---------ENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 960 EKLTESQAKLEMQVAELQVELENKDTNQHSGALIKqlnDTIQN-LEKVNAKLSEDNTVS---HTVH---------SKLNE 1026
Cdd:TIGR02168 594 LKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVV---DDLDNaLELAKKLRPGYRIVTldgDLVRpggvitggsAKTNS 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1027 SLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLER--- 1103
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEEria 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1104 ----------NQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQ 1173
Cdd:TIGR02168 751 qlskelteleAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1174 RQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLS 1253
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1254 DDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKE-----SAQQLVDNLKvELDKERKELAQVNS 1328
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEnkiedDEEEARRRLK-RLENKIKELGPVNL 989
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 386764405 1329 A----FEAQTKLSDDLQREKESAQQLVDNLK---VELDKERKEL 1365
Cdd:TIGR02168 990 AaieeYEELKERYDFLTAQKEDLTEAKETLEeaiEEIDREARER 1033
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1217-1959 |
2.33e-11 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 69.82 E-value: 2.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1217 QKESGQQLVDNLKVELEKERKELAQ-VKSVIEAQTKLSDDLQREKESAQQlVDNLKVELDKERKELAQVNSAFEAQtkls 1295
Cdd:pfam01576 9 AKEEELQKVKERQQKAESELKELEKkHQQLCEEKNALQEQLQAETELCAE-AEEMRARLAARKQELEEILHELESR---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1296 ddLQRQKESAQQLvdnlkvelDKERKELAQVNSAFEAQTKlsddlqrEKESAQQLVDNLKVELDKERKELAQVKSVIEAQ 1375
Cdd:pfam01576 84 --LEEEEERSQQL--------QNEKKKMQQHIQDLEEQLD-------EEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1376 -TKLSDDLQRQKESAQQLVDNLKVELDKErKELAKVKSVIEAQ-TKLSDDLQRQKESAQQLEAQTKLSD----DLQRQKE 1449
Cdd:pfam01576 147 nSKLSKERKLLEERISEFTSNLAEEEEKA-KSLSKLKNKHEAMiSDLEERLKKEEKGRQELEKAKRKLEgestDLQEQIA 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1450 SAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSaigAQTKLSDDLE 1529
Cdd:pfam01576 226 ELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEK---QRRDLGEELE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1530 CQKESVQQLVDNLKVELE---KERKELAKVNSAFEAQTKLSD---------------DLKLQKEDAQRevflVKERLVKE 1591
Cdd:pfam01576 303 ALKTELEDTLDTTAAQQElrsKREQEVTELKKALEEETRSHEaqlqemrqkhtqaleELTEQLEQAKR----NKANLEKA 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1592 KREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKS------SQLQVETFKV-------ECLHHQ 1658
Cdd:pfam01576 379 KQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAelaeklSKLQSELESVssllneaEGKNIK 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1659 LKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQhrLEAETAEREEAQNKLAVV 1738
Cdd:pfam01576 459 LSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQ--LSTLQAQLSDMKKKLEED 536
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1739 TGRLDEI-------TRELDNARL---EHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSI 1808
Cdd:pfam01576 537 AGTLEALeegkkrlQRELEALTQqleEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAI 616
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1809 QSNQAEGvRDLGDtysaAEGRQTES---------DQDKERYQKLALDCKILQAKYRD---AKDEIKRCEKKIKDQRLEME 1876
Cdd:pfam01576 617 SARYAEE-RDRAE----AEAREKETralslaralEEALEAKEELERTNKQLRAEMEDlvsSKDDVGKNVHELERSKRALE 691
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1877 GKLEKMKNKMR----SLYTAEVTRMKEKQERDAAKSASELEaLTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIIST 1952
Cdd:pfam01576 692 QQVEEMKTQLEeledELQATEDAKLRLEVNMQALKAQFERD-LQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVA 770
|
....*..
gi 386764405 1953 NLRHLQM 1959
Cdd:pfam01576 771 AKKKLEL 777
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1240-1457 |
6.23e-11 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 66.78 E-value: 6.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1240 AQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDK- 1318
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1319 ------------------ERKELAQVNSAFEAQTKLSD---DLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTK 1377
Cdd:COG3883 92 aralyrsggsvsyldvllGSESFSDFLDRLSALSKIADadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1378 lsdDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDN 1457
Cdd:COG3883 172 ---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAG 248
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1026-1632 |
8.62e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 8.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1026 ESLLKAQKELDLRAKIIENLEASERNLSMKLCELKD-LKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLE-R 1103
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKeLEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEElE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1104 NQNQSLTQLKEdalencvlmstKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSddlqrqkesgqQLV 1183
Cdd:PRK03918 245 KELESLEGSKR-----------KLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLS-----------EFY 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1184 DNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESgqqlvdnlKVELEKERKELAQVKSVIEAQTKLSDDLQRekesa 1263
Cdd:PRK03918 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER--------LEELKKKLKELEKRLEELEERHELYEEAKA----- 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1264 qqlvdnLKVELDKERKELAqvNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEaqtklsddlqrE 1343
Cdd:PRK03918 370 ------KKEELERLKKRLT--GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE-----------E 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1344 KESAQQLVDNLKVELDKE-RKELAQvksviEAQTKLSDDLQRQKEsaqqlvdnLKVELDKERKELAKVKSVIEAQTKLSd 1422
Cdd:PRK03918 431 LKKAKGKCPVCGRELTEEhRKELLE-----EYTAELKRIEKELKE--------IEEKERKLRKELRELEKVLKKESELI- 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1423 dlqRQKESAQQL-EAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLK 1501
Cdd:PRK03918 497 ---KLKELAEQLkELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1502 mELDKERKELA-----QVKSAIGAQTKLSD------DLECQKESVQQLVDNLKVELEKERKELAKVNSAFE-AQTKLSDD 1569
Cdd:PRK03918 574 -ELLKELEELGfesveELEERLKELEPFYNeylelkDAEKELEREEKELKKLEEELDKAFEELAETEKRLEeLRKELEEL 652
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386764405 1570 LKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLEN 1632
Cdd:PRK03918 653 EKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1324-1523 |
9.29e-11 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 66.39 E-value: 9.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1324 AQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKE 1403
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1404 RKELAK-------VKSVIEAQTkLSDDLQRQKESAQQLEAQTKLSDDLQRQKESaqqlVDNLKVELDKERKELAQVKSVI 1476
Cdd:COG3883 92 ARALYRsggsvsyLDVLLGSES-FSDFLDRLSALSKIADADADLLEELKADKAE----LEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 386764405 1477 EAQTKlsdDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTK 1523
Cdd:COG3883 167 EAAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1138-1929 |
1.07e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 67.76 E-value: 1.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1138 QQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDL---QRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDL 1214
Cdd:TIGR00606 192 RQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQItskEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1215 ECQKESGQQLvDNLKVELEKERKELAQvkSVIEAQTKLSDDLQRE-KESAQQLVDNLKV--ELDKERKELAQVNSAFEAQ 1291
Cdd:TIGR00606 272 KALKSRKKQM-EKDNSELELKMEKVFQ--GTDEQLNDLYHNHQRTvREKERELVDCQREleKLNKERRLLNQEKTELLVE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1292 TK-------------LSDDLQRQKESAQQLVDNLK------------VELDKERKE---------LAQVNSAFEAQTKLS 1337
Cdd:TIGR00606 349 QGrlqlqadrhqehiRARDSLIQSLATRLELDGFErgpfserqiknfHTLVIERQEdeaktaaqlCADLQSKERLKQEQA 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1338 DDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKEsaqqlvdnlkvELDKERKELAKVKSVIEAQ 1417
Cdd:TIGR00606 429 DEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQ-----------ELRKAERELSKAEKNSLTE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1418 TKLSDDLQRQKESAQQLEAQTKLSDD---LQRQKESAQQLVDNLKVELDKERK----------ELAQVKSVIEAQTKLSD 1484
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLRKLDQEmeqLNHHTTTRTQMEMLTKDKMDKDEQirkiksrhsdELTSLLGYFPNKKQLED 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1485 DLQRQKESAQQLVDNLKmELDKERKELAQVKSAIGAQ--------TKLSDDL--ECQKESVQQLVDNLKVELEKERKELA 1554
Cdd:TIGR00606 578 WLHSKSKEINQTRDRLA-KLNKELASLEQNKNHINNEleskeeqlSSYEDKLfdVCGSQDEESDLERLKEEIEKSSKQRA 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1555 KVNSAFEAQTKLSDDLKLQKE----------DAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQM---EEERA 1621
Cdd:TIGR00606 657 MLAGATAVYSQFITQLTDENQsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglAPGRQ 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1622 TAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNSL----------------VEDLNRKLAEKVSKLD 1685
Cdd:TIGR00606 737 SIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvcltdvtimerfqmeLKDVERKIAQQAAKLQ 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1686 FVQ-SRLMTEIAEHNQVKDQ-----LAQITDIPKVVELQ----------------HRLEAETAEREEAQ--NKLAVVTGR 1741
Cdd:TIGR00606 817 GSDlDRTVQQVNQEKQEKQHeldtvVSKIELNRKLIQDQqeqiqhlksktnelksEKLQIGTNLQRRQQfeEQLVELSTE 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1742 LDEITRELDNAR---------LEHGAQILRMEETAREVGNKNAEL--------CELIEFYRNRVE-----ALERLLLASN 1799
Cdd:TIGR00606 897 VQSLIREIKDAKeqdspletfLEKDQQEKEELISSKETSNKKAQDkvndikekVKNIHGYMKDIEnkiqdGKDDYLKQKE 976
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1800 QELEELNSiQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKI-KDQRLEMEGK 1878
Cdd:TIGR00606 977 TELNTVNA-QLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMgQMQVLQMKQE 1055
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|.
gi 386764405 1879 LEKMKNKMRSLYTAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKL 1929
Cdd:TIGR00606 1056 HQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREM 1106
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1295-1811 |
1.80e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.58 E-value: 1.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1295 SDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVK---SV 1371
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllSN 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1372 IEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVI-EAQTKLSDDLQRQKESAQQLEAQTKlsddlqrQKES 1450
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIsNTQTQLNQLKDEQNKIKKQLSEKQK-------ELEQ 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1451 AQQLVDNLKveldkerKELAQVKSVIEaqtklsdDLQRQKEsaQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLEC 1530
Cdd:TIGR04523 279 NNKKIKELE-------KQLNQLKSEIS-------DLNNQKE--QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNE 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1531 QKESVQQLVDNL-------KVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKerlvKEKREFEVKLATLE 1603
Cdd:TIGR04523 343 QISQLKKELTNSesensekQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE----KLNQQKDEQIKKLQ 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1604 DIIETLEMRCTQMEEERATAYEQINKLENrcqekdnvKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSK 1683
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTN--------QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKE 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1684 LDFVQSRLMTEIAEHNQVKDQLAQITDipKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQ---- 1759
Cdd:TIGR04523 491 LKSKEKELKKLNEEKKELEEKVKDLTK--KISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDeknk 568
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764405 1760 -ILRMEETAREVGNKNAELCEL--------------IEFYRNRVEALERLLLASNQELEELNSIQSN 1811
Cdd:TIGR04523 569 eIEELKQTQKSLKKKQEEKQELidqkekekkdlikeIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
815-1469 |
2.21e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.70 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 815 ADDLKRELDDLRSKNEELAKQningiikrnkfitslevnTEKVKQyitdlEEEAFKRKQKVVQLENTLSKEQSNAKEMAQ 894
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKK------------------AEEAKK-----AAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 895 RLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQlgtcMTEFLKMYDQMEVRYEEssslVEKLTESQAKLEMqvA 974
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK----AAAAKKKADEAKKKAEE----KKKADEAKKKAEE--A 1443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 975 ELQVELENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEdntvshtvhSKLNESLLKAQKELDLRAKIIENLEASERnlsm 1054
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE---------AKKADEAKKKAEEAKKKADEAKKAAEAKK---- 1510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1055 KLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQakl 1134
Cdd:PTZ00121 1511 KADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK--- 1587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1135 qegqqlvdsqklelDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVElEKERKELAHVNSAIGAQTKLSDDL 1214
Cdd:PTZ00121 1588 --------------KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-EEEKKKVEQLKKKEAEEKKKAEEL 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1215 ECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQlVDNLKVELDKERKELAQVNSAFEAQTKL 1294
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-AEELKKKEAEEKKKAEELKKAEEENKIK 1731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1295 SDDLQRQKESAQQLVDNLKVElDKERKELAQVNSAFEaqtKLSDDLQREKESAqqlvdnLKVELDKE-RKELAQVKSVIE 1373
Cdd:PTZ00121 1732 AEEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEE---KKAEEIRKEKEAV------IEEELDEEdEKRRMEVDKKIK 1801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1374 AQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSvieAQTKLSDDLQRQKESAQQLEAQTKLSD-DLQRQKESAQ 1452
Cdd:PTZ00121 1802 DIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKN---MQLEEADAFEKHKFNKNNENGEDGNKEaDFNKEKDLKE 1878
|
650
....*....|....*..
gi 386764405 1453 QLVDNlkVELDKERKEL 1469
Cdd:PTZ00121 1879 DDEEE--IEEADEIEKI 1893
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1238-1500 |
3.87e-10 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 65.42 E-value: 3.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1238 ELAQVKS--VIEA---QTKLSDDLQREKES----AQQLVDNLKVEL------------DKERKELAQVNSAFeAQTKLSD 1296
Cdd:COG3206 86 QIEILKSrpVLERvvdKLNLDEDPLGEEASreaaIERLRKNLTVEPvkgsnvieisytSPDPELAAAVANAL-AEAYLEQ 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1297 DLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEA--QTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEA 1374
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1375 qtkLSDDLQRQKESAQQLVDNlkVELDKERKELAKVKSVI-EAQTKLSDD------LQRQKESAQQL--EAQTKLSDDLQ 1445
Cdd:COG3206 245 ---LRAQLGSGPDALPELLQS--PVIQQLRAQLAELEAELaELSARYTPNhpdviaLRAQIAALRAQlqQEAQRILASLE 319
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 386764405 1446 RQKESAQQLVDNLKVELDKERKELAQVKsviEAQTKLSdDLQRQKESAQQLVDNL 1500
Cdd:COG3206 320 AELEALQAREASLQAQLAQLEARLAELP---ELEAELR-RLEREVEVARELYESL 370
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1231-1457 |
4.34e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.40 E-value: 4.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1231 ELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQlvd 1310
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA--- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1311 nlkvELDKERKELAQVNSAFEAQTKLS-----------DDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLS 1379
Cdd:COG4942 98 ----ELEAQKEELAELLRALYRLGRQPplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764405 1380 DDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDN 1457
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1217-1442 |
6.57e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.63 E-value: 6.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1217 QKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNsafEAQTKLSD 1296
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE---KEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1297 DLQRQKES-AQQLVDNLKVELDKERKELAQVNSAFEAQTKLS---------DDLQREKESAQQLVDNLKVELDKERKELA 1366
Cdd:COG4942 98 ELEAQKEElAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylaparREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1367 QVKSVIEAQTKlsdDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSD 1442
Cdd:COG4942 178 ALLAELEEERA---ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAA 250
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1038-1749 |
1.29e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 63.83 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1038 RAKIIENLEASER---NLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQS------ 1108
Cdd:TIGR00618 165 KKELLMNLFPLDQytqLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTqqshay 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1109 LTQLKEdALENCVLMSTKLEELQAKLQEGQQLVdsQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKV 1188
Cdd:TIGR00618 245 LTQKRE-AQEEQLKKQQLLKQLRARIEELRAQE--AVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMR 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1189 ELEKERKELAHVnsaigaqTKLSDDLECQKESGQQLVDNlKVELEKERKELAQVKSVIEAQTKLSDDL---QREKESAQQ 1265
Cdd:TIGR00618 322 SRAKLLMKRAAH-------VKQQSSIEEQRRLLQTLHSQ-EIHIRDAHEVATSIREISCQQHTLTQHIhtlQQQKTTLTQ 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1266 LVDNLKVELDKERKELAQVnsafEAQTKLSDDLQRQKESAQQlvdnlKVELDKERKELAQVNSAFEAQTK------LSDD 1339
Cdd:TIGR00618 394 KLQSLCKELDILQREQATI----DTRTSAFRDLQGQLAHAKK-----QQELQQRYAELCAAAITCTAQCEklekihLQES 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1340 LQREKESAQQL--VDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQ 1417
Cdd:TIGR00618 465 AQSLKEREQQLqtKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1418 TKLSDDLQRQKESAQQLEAQTKLSDDlqrQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDdlqrqkesaqqlv 1497
Cdd:TIGR00618 545 EDVYHQLTSERKQRASLKEQMQEIQQ---SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAED------------- 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1498 dnlkMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQL--VDNLKVELEKERKELAKVNS-AFEAQTKLSDDLKLQK 1574
Cdd:TIGR00618 609 ----MLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLtaLHALQLTLTQERVREHALSIrVLPKELLASRQLALQK 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1575 EDAQrevflvKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENR-------CQEKDNVKSSQLQV 1647
Cdd:TIGR00618 685 MQSE------KEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARedalnqsLKELMHQARTVLKA 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1648 ETFKVECLHHQLKSEMATHNSLvEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKVVELQHRleaetae 1727
Cdd:TIGR00618 759 RTEAHFNNNEEVTAALQTGAEL-SHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEE------- 830
|
730 740
....*....|....*....|..
gi 386764405 1728 rEEAQNKLAVVTGRLDEITREL 1749
Cdd:TIGR00618 831 -EQFLSRLEEKSATLGEITHQL 851
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1232-1805 |
1.29e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.93 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1232 LEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEaqtKLSDDLQRQKESAQQLvDN 1311
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP---ELREELEKLEKEVKEL-EE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1312 LKVELDKERKELAQVNSAFEaqtKLSDDLQREKESAQQLVDNLKvELDKERKELAQVKSVIEAQTKLSddlqrqkesaqQ 1391
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKR---KLEEKIRELEERIEELKKEIE-ELEEKVKELKELKEKAEEYIKLS-----------E 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1392 LVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTK-LSDDLQRQKESAQ--QLVDNLKVELDKERKE 1468
Cdd:PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKeLEKRLEELEERHElyEEAKAKKEELERLKKR 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1469 LAQVKsvIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDL-----ECQKESVQQLVDNLK 1543
Cdd:PRK03918 381 LTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrELTEEHRKELLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1544 VELEKERKELAKVNsafEAQTKLSDDL-KLQKEDAQREVFLVKERLVKEKREFEVKLATLEdiIETLEMRCTQMEEERat 1622
Cdd:PRK03918 459 AELKRIEKELKEIE---EKERKLRKELrELEKVLKKESELIKLKELAEQLKELEEKLKKYN--LEELEKKAEEYEKLK-- 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1623 ayEQINKLENRCQ--EKDNVKSSQLQVETFKVECLHHQLKSEMAthnslveDLNRKLAEK-VSKLDFVQSRlmteIAEHN 1699
Cdd:PRK03918 532 --EKLIKLKGEIKslKKELEKLEELKKKLAELEKKLDELEEELA-------ELLKELEELgFESVEELEER----LKELE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1700 QVKDQLAQITDIPKVVE-LQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGaqilrmEETAREVGNKNAELC 1778
Cdd:PRK03918 599 PFYNEYLELKDAEKELErEEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS------EEEYEELREEYLELS 672
|
570 580
....*....|....*....|....*..
gi 386764405 1779 ELIEFYRNRVEALERLLLASNQELEEL 1805
Cdd:PRK03918 673 RELAGLRAELEELEKRREEIKKTLEKL 699
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1155-1479 |
1.67e-09 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 63.82 E-value: 1.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1155 LALVKSAYEAQTKLSDDLQRQKESGQQLVD------NLKVELEKERKELAHVNSAIGAQTKLS------DDLECQKESGQ 1222
Cdd:COG3096 288 LELRRELFGARRQLAEEQYRLVEMARELEElsaresDLEQDYQAASDHLNLVQTALRQQEKIEryqedlEELTERLEEQE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1223 QLVDNLKVELE--KERKELAQvKSVIEAQTKLSD-----DLQ-----------REKESAQQL-------VDNLKVELDKE 1277
Cdd:COG3096 368 EVVEEAAEQLAeaEARLEAAE-EEVDSLKSQLADyqqalDVQqtraiqyqqavQALEKARALcglpdltPENAEDYLAAF 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1278 RKELAQVNSA-FEAQTKLS--DDLQRQKESAQQLVDNLKVELDKERkelaqvnsAFEAQTKLSDDLQREKESAQQlVDNL 1354
Cdd:COG3096 447 RAKEQQATEEvLELEQKLSvaDAARRQFEKAYELVCKIAGEVERSQ--------AWQTARELLRRYRSQQALAQR-LQQL 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1355 KVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLvDNLKVELDKERKEL-AKVKSVIEAQTKLSDDL----QRQKE 1429
Cdd:COG3096 518 RAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEEL-EELLAELEAQLEELeEQAAEAVEQRSELRQQLeqlrARIKE 596
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386764405 1430 SAQQ----LEAQTKLS----------DDLQRQKESAQQLVDNLKvELDKERKELAQVKSVIEAQ 1479
Cdd:COG3096 597 LAARapawLAAQDALErlreqsgealADSQEVTAAMQQLLERER-EATVERDELAARKQALESQ 659
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1123-1960 |
1.85e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 63.66 E-value: 1.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1123 MSTKLEELQaKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELahvNS 1202
Cdd:pfam01576 7 MQAKEEELQ-KVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHEL---ES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1203 AIGAQTKLSDDLECQKESGQQLVDNLKVELEKE---RKELAQVKSVIEAQTK-LSDDLQrekesaqqLVDNLKVELDKER 1278
Cdd:pfam01576 83 RLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEeaaRQKLQLEKVTTEAKIKkLEEDIL--------LLEDQNSKLSKER 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1279 KELAQVNSAFEAQ----TKLSDDLQRQKESAQQLVDNLKVELDKE---RKELAQVNSAFEAQtklSDDLQREKESAQQLV 1351
Cdd:pfam01576 155 KLLEERISEFTSNlaeeEEKAKSLSKLKNKHEAMISDLEERLKKEekgRQELEKAKRKLEGE---STDLQEQIAELQAQI 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1352 DNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKsvieaqtklsddlQRQKESA 1431
Cdd:pfam01576 232 AELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAE-------------KQRRDLG 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1432 QQLEA-QTKLSDDL------QRQKESAQQLVDNLKVELDKE-RKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNL--- 1500
Cdd:pfam01576 299 EELEAlKTELEDTLdttaaqQELRSKREQEVTELKKALEEEtRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLeka 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1501 KMELDKERKEL-AQVKSAIGAQTklsdDLECQKESVQQLVDNLKV---ELEKERKELA----KVNSAFEAQTKL-----S 1567
Cdd:pfam01576 379 KQALESENAELqAELRTLQQAKQ----DSEHKRKKLEGQLQELQArlsESERQRAELAeklsKLQSELESVSSLlneaeG 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1568 DDLKLQKEDAQREVFL--VKERLVKEKREfevKLAtlediietLEMRCTQMEEERATAYEQinkLENRCQEKDNVkSSQL 1645
Cdd:pfam01576 455 KNIKLSKDVSSLESQLqdTQELLQEETRQ---KLN--------LSTRLRQLEDERNSLQEQ---LEEEEEAKRNV-ERQL 519
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1646 QVETFKVECLHHQLKSEMATHNSL----------VEDLNRKLAEKVS---KLDFVQSRLMTEIAEHNQVKDQLAQItdIP 1712
Cdd:pfam01576 520 STLQAQLSDMKKKLEEDAGTLEALeegkkrlqreLEALTQQLEEKAAaydKLEKTKNRLQQELDDLLVDLDHQRQL--VS 597
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1713 KVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKN----AELCELIEFYRN-- 1786
Cdd:pfam01576 598 NLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNkqlrAEMEDLVSSKDDvg 677
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1787 -RVEALERLLLASNQELEELNS----------------------IQSNQAEGVRDLGDTYSAAEG---------RQTESD 1834
Cdd:pfam01576 678 kNVHELERSKRALEQQVEEMKTqleeledelqatedaklrlevnMQALKAQFERDLQARDEQGEEkrrqlvkqvRELEAE 757
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1835 QDKERYQ---------KLALDCKILQAKYRDAK------------------------DEIKRCEKKIKDQRLEMEGKLEK 1881
Cdd:pfam01576 758 LEDERKQraqavaakkKLELDLKELEAQIDAANkgreeavkqlkklqaqmkdlqrelEEARASRDEILAQSKESEKKLKN 837
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1882 MKNKM----RSLYTAEVTRMKEKQERDaaKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLRHL 1957
Cdd:pfam01576 838 LEAELlqlqEDLAASERARRQAQQERD--ELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKS 915
|
...
gi 386764405 1958 QMQ 1960
Cdd:pfam01576 916 TLQ 918
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1112-1680 |
1.99e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 63.20 E-value: 1.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1112 LKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESgqqlvDNLKVELE 1191
Cdd:pfam05483 65 LKDSDFENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEK-----VSLKLEEE 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1192 -KERKELAHVNSAIGAQTKL-----------SDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIE-AQTKLSDDLQR 1258
Cdd:pfam05483 140 iQENKDLIKENNATRHLCNLlketcarsaekTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAEnARLEMHFKLKE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1259 EKESAQQLVDNLKVELDKERKE----LAQVNSAFEAQTKLSDDLQRQKESAQQL-------VDNLKVELDKER---KELA 1324
Cdd:pfam05483 220 DHEKIQHLEEEYKKEINDKEKQvsllLIQITEKENKMKDLTFLLEESRDKANQLeektklqDENLKELIEKKDhltKELE 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1325 QVNSAFE----AQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVEL 1400
Cdd:pfam05483 300 DIKMSLQrsmsTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQL 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1401 DKERKELAKVKSVIEAQTKLSDDLQRQKEsaqqlEAQTKLSDDLQRQKESAQqlVDNLKVELDKERKELAqvkSVIEAQT 1480
Cdd:pfam05483 380 KIITMELQKKSSELEEMTKFKNNKEVELE-----ELKKILAEDEKLLDEKKQ--FEKIAEELKGKEQELI---FLLQARE 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1481 KLSDDLQRQ-------KESAQQLVDNLKMELDKERKELAQVksaigaqTKLSDDLECQKESVQQLVDNLKVELEK----- 1548
Cdd:pfam05483 450 KEIHDLEIQltaiktsEEHYLKEVEDLKTELEKEKLKNIEL-------TAHCDKLLLENKELTQEASDMTLELKKhqedi 522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1549 ------ERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEK---REFEVKLATLEDIIETLEMRCTQME-- 1617
Cdd:pfam05483 523 inckkqEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEenaRSIEYEVLKKEKQMKILENKCNNLKkq 602
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386764405 1618 -EERATAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEK 1680
Cdd:pfam05483 603 iENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDK 666
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1229-1928 |
2.26e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.21 E-value: 2.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1229 KVELEKERKELA-----QVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKE 1303
Cdd:pfam15921 58 EVELDSPRKIIAypgkeHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRES 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1304 SAQQlvdNLKVELDKERKELaqvnsafEAQTKLSDDLQreKESAQQLVDNLKVELDKErKELAQVKSVIEAQTKLSDDLQ 1383
Cdd:pfam15921 138 QSQE---DLRNQLQNTVHEL-------EAAKCLKEDML--EDSNTQIEQLRKMMLSHE-GVLQEIRSILVDFEEASGKKI 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1384 RQKESAQQL--------VDNLKVELDKE-----------RKELAKVKSviEAQTKLSDDLQRQKESAQQLEAQ-----TK 1439
Cdd:pfam15921 205 YEHDSMSTMhfrslgsaISKILRELDTEisylkgrifpvEDQLEALKS--ESQNKIELLLQQHQDRIEQLISEheveiTG 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1440 LSDDLQRQKESAQQLVDNLKVELDKERKE----LAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVK 1515
Cdd:pfam15921 283 LTEKASSARSQANSIQSQLEIIQEQARNQnsmyMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1516 SAIGAQTKLSDDLECQkesvqqlVDNLKVELEKERKELakvnSAFEAQTKlsddlKLQKEDAQREVFLVKERLVKEKREF 1595
Cdd:pfam15921 363 TERDQFSQESGNLDDQ-------LQKLLADLHKREKEL----SLEKEQNK-----RLWDRDTGNSITIDHLRRELDDRNM 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1596 EVKlaTLEDIIETLEMRCT-QMEEERATayeqinkLENRCQEKDNVKSSQLQVETFK------VECLHHQlKSEMATHNS 1668
Cdd:pfam15921 427 EVQ--RLEALLKAMKSECQgQMERQMAA-------IQGKNESLEKVSSLTAQLESTKemlrkvVEELTAK-KMTLESSER 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1669 LVEDLNRKLAEKV-------SKLDFVQSRLMTEIAEHNQVKDQLAQITDIpkvvelQHRLEAETAEREEAQNKLAVVTGR 1741
Cdd:pfam15921 497 TVSDLTASLQEKEraieatnAEITKLRSRVDLKLQELQHLKNEGDHLRNV------QTECEALKLQMAEKDKVIEILRQQ 570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1742 LDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELiEFYRNRVEALERLLLA--SNQELEELNSIQSNqAEGVRDL 1819
Cdd:pfam15921 571 IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEF-KILKDKKDAKIRELEArvSDLELEKVKLVNAG-SERLRAV 648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1820 GDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMK- 1898
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKv 728
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 386764405 1899 ----EKQ------ERDAAKSASELEALTAQNAKYEEHTRK 1928
Cdd:pfam15921 729 amgmQKQitakrgQIDALQSKIQFLEEAMTNANKEKHFLK 768
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
954-1478 |
2.68e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 62.75 E-value: 2.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 954 ESSSLVEKLTEsqakLEMQVAELQVELENKDTNQHSGALIKQLNDTIqnLEKVNAKLSEDNTVSHTVhSKLNESLLKAQK 1033
Cdd:PRK02224 200 EEKDLHERLNG----LESELAELDEEIERYEEQREQARETRDEADEV--LEEHEERREELETLEAEI-EDLRETIAETER 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1034 ELDLRAKIIENLEA------SERNLSMKLCELKDLknklksSDEKIAQIKETYEEQIKALQAKCdMEAKKNEHLERNQNQ 1107
Cdd:PRK02224 273 EREELAEEVRDLRErleeleEERDDLLAEAGLDDA------DAEAVEARREELEDRDEELRDRL-EECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1108 SLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKL-------ELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQ 1180
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREeieeleeEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1181 QLVDNLKVELEKERKELAHvNSAIGAQTKLS---------------DDLECQKESGQQLVDNLKVELEKERKELAQVKSV 1245
Cdd:PRK02224 426 EREAELEATLRTARERVEE-AEALLEAGKCPecgqpvegsphvetiEEDRERVEELEAELEDLEEEVEEVEERLERAEDL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1246 IEAQTKLsDDLQREKESAQQLVDNLKVELDKERKELAQVNsafEAQTKLSDDLQRQKESAQQL---VDNLKVELDKERKE 1322
Cdd:PRK02224 505 VEAEDRI-ERLEERREDLEELIAERRETIEEKRERAEELR---ERAAELEAEAEEKREAAAEAeeeAEEAREEVAELNSK 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1323 LAQVNSAFEAQTKLSDDLQREKESAQQLvdnlkVELDKERKELAQVKSviEAQTKLSDDLQRQKEsaqqlvdnLKVELDK 1402
Cdd:PRK02224 581 LAELKERIESLERIRTLLAAIADAEDEI-----ERLREKREALAELND--ERRERLAEKRERKRE--------LEAEFDE 645
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1403 ERKElakvksviEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKvELDKERKELAQVKSVIEA 1478
Cdd:PRK02224 646 ARIE--------EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE-ELRERREALENRVEALEA 712
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1205-1807 |
3.15e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 62.75 E-value: 3.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1205 GAQTKLSDDLEcQKESgQQLVDNLKvELEKERKEL--------AQVKSVIEAQTKLSDDLQREKESAQQLvDNLKVELDK 1276
Cdd:PRK02224 187 GSLDQLKAQIE-EKEE-KDLHERLN-GLESELAELdeeieryeEQREQARETRDEADEVLEEHEERREEL-ETLEAEIED 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1277 ERKELAQvnsAFEAQTKLSDDLQRQKESAQQLVDnlkvELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQlvdnlkv 1356
Cdd:PRK02224 263 LRETIAE---TEREREELAEEVRDLRERLEELEE----ERDDLLAEAGLDDADAEAVEARREELEDRDEELRD------- 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1357 ELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQ-QLE 1435
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPvDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1436 AQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQtklsddlqRQKESAQQLVDNLKMELDKERKElaqvk 1515
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAG--------KCPECGQPVEGSPHVETIEEDRE----- 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1516 saigaqtklsddlecQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLsDDLKLQKEDAQREVFLVKERLvKEKREf 1595
Cdd:PRK02224 476 ---------------RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRI-ERLEERREDLEELIAERRETI-EEKRE- 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1596 evKLATLEDIIETLEmrcTQMEEERATAYEQINKLEnRCQEKDNVKSSQLQVETFKVECLHH--QLKSEMATHNSLVEDL 1673
Cdd:PRK02224 538 --RAEELRERAAELE---AEAEEKREAAAEAEEEAE-EAREEVAELNSKLAELKERIESLERirTLLAAIADAEDEIERL 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1674 NRKLAEKVSKLDFVQSRLmteiAEHNQVKDQLAQITDIPKVVELQHRLEAETAEreeaqnkLAVVTGRLDEITRELDNAR 1753
Cdd:PRK02224 612 REKREALAELNDERRERL----AEKRERKRELEAEFDEARIEEAREDKERAEEY-------LEQVEEKLDELREERDDLQ 680
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 386764405 1754 LEHGAqilrmeetareVGNKNAELCEL---IEFYRNRVEALERLllasNQELEELNS 1807
Cdd:PRK02224 681 AEIGA-----------VENELEELEELrerREALENRVEALEAL----YDEAEELES 722
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1427-1644 |
3.30e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 61.32 E-value: 3.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1427 QKESAQQLEAQTKlsdDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDK 1506
Cdd:COG4942 18 QADAAAEAEAELE---QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1507 ERKELAQVKSAIGAQTKL------------------SDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSD 1568
Cdd:COG4942 95 LRAELEAQKEELAELLRAlyrlgrqpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1569 DLKLQKEDAQREvflvKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQ 1644
Cdd:COG4942 175 ELEALLAELEEE----RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
799-1685 |
5.09e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 62.38 E-value: 5.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 799 KRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNINGIIK-RNKFITSLEVNTEKVkqYITDLEEEaFKRKQKVVQ 877
Cdd:TIGR01612 537 KLYKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEiKDLFDKYLEIDDEII--YINKLKLE-LKEKIKNIS 613
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 878 LENTLSKEQSNAKEMAQRLDIAQQE---IKDYHV-EAIRFINTIrdrlqqdfngvntpqqLGTCMTEFLKMY-DQMEVRY 952
Cdd:TIGR01612 614 DKNEYIKKAIDLKKIIENNNAYIDElakISPYQVpEHLKNKDKI----------------YSTIKSELSKIYeDDIDALY 677
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 953 EESSSLVEKL----TESQAKLEmqvaelqvELENKDTNQHsgalikqlnDTIQNLEKVNAKLSEDNTvsHTVHSKLNESL 1028
Cdd:TIGR01612 678 NELSSIVKENaidnTEDKAKLD--------DLKSKIDKEY---------DKIQNMETATVELHLSNI--ENKKNELLDII 738
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1029 LKAQKEL------DLRaKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKcDMEAKKNEHLE 1102
Cdd:TIGR01612 739 VEIKKHIhgeinkDLN-KILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINIDNIK-DEDAKQNYDKS 816
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1103 RNQNQSLTqLKEDALENCV-LMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQT---KLSDDLQRQKES 1178
Cdd:TIGR01612 817 KEYIKTIS-IKEDEIFKIInEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKAEIsddKLNDYEKKFNDS 895
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1179 gQQLVDNLKVELEKERKE---LAHVNSAIGAQTKLSDDLEC----QKESGQQLVDNLKV-----ELEKERKE------LA 1240
Cdd:TIGR01612 896 -KSLINEINKSIEEEYQNintLKKVDEYIKICENTKESIEKfhnkQNILKEILNKNIDTikesnLIEKSYKDkfdntlID 974
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1241 QVKSVIEAQTKLS-DDLQREKESAQQLVDNLKVELDKERKELaqVNSAFEAQTKLSDDLQRQKESAQQLVDNLkveldke 1319
Cdd:TIGR01612 975 KINELDKAFKDASlNDYEAKNNELIKYFNDLKANLGKNKENM--LYHQFDEKEKATNDIEQKIEDANKNIPNI------- 1045
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1320 rkELAQVNSAFEAQTKLSDDLQREKESAQQLVDNlKVELD-------KERKELAQVKS-VIEAQTKLSDDLQRQKESaqq 1391
Cdd:TIGR01612 1046 --EIAIHTSIYNIIDEIEKEIGKNIELLNKEILE-EAEINitnfneiKEKLKHYNFDDfGKEENIKYADEINKIKDD--- 1119
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1392 lVDNLKVELDKERKELAKVKSVIEaqtKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLV---DNLKVELDKERKE 1468
Cdd:TIGR01612 1120 -IKNLDQKIDHHIKALEEIKKKSE---NYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVtkiDKKKNIYDEIKKL 1195
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1469 LAQVKSVIEAQTKLsDDLQRQKESAQQLVDNLKME-LDKERKelaQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELE 1547
Cdd:TIGR01612 1196 LNEIAEIEKDKTSL-EEVKGINLSYGKNLGKLFLEkIDEEKK---KSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMD 1271
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1548 --KERKELAKVNSAFEAQTKLSddlklQKEDaqREVFLVKERLVKEKREFEVKlATLEDIIETLEMRCTQMEEERATAYE 1625
Cdd:TIGR01612 1272 ikAEMETFNISHDDDKDHHIIS-----KKHD--ENISDIREKSLKIIEDFSEE-SDINDIKKELQKNLLDAQKHNSDINL 1343
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1626 QINKLEN--RCQEKDNVKS--SQLQVETFKVECLHHQLKSEMATHNSLVEDL--NRKLAEKVSKLD 1685
Cdd:TIGR01612 1344 YLNEIANiyNILKLNKIKKiiDEVKEYTKEIEENNKNIKDELDKSEKLIKKIkdDINLEECKSKIE 1409
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1155-1389 |
5.13e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.93 E-value: 5.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1155 LALVKSAYEAQTKLsDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEK 1234
Cdd:COG4942 16 AAQADAAAEAEAEL-EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1235 ERKELAQVKSVIEAQTKlsddlqrekeSAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKE---SAQQLVDN 1311
Cdd:COG4942 95 LRAELEAQKEELAELLR----------ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEelrADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764405 1312 LKVELDKERKELAQVNSAFEAQTKlsdDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESA 1389
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERA---ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1363-1900 |
5.41e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 5.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1363 KELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEaqtKLSDDLQRQKESAQQLEAQTKLSD 1442
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP---ELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1443 DLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQ------QLVDNLKMELDKERKELAQVKS 1516
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEeyiklsEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1517 AIGAQTKLSDDLECQKESVQqlvdnlkvELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQ----REVFLVKERLVKEK 1592
Cdd:PRK03918 322 EINGIEERIKELEEKEERLE--------ELKKKLKELEKRLEELEERHELYEEAKAKKEELErlkkRLTGLTPEKLEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1593 REFEVKLATLEDIIETLEMRCTQME---EERATAYEQINKLENRC----------QEKDNVKSSQLQVEtfkveclhhQL 1659
Cdd:PRK03918 394 EELEKAKEEIEEEISKITARIGELKkeiKELKKAIEELKKAKGKCpvcgrelteeHRKELLEEYTAELK---------RI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1660 KSEMATHNSLVEDLnRKLAEKVSKLDFVQSRL--MTEIAEH-NQVKDQLAQI---------TDIPKVVELQHRLEAETAE 1727
Cdd:PRK03918 465 EKELKEIEEKERKL-RKELRELEKVLKKESELikLKELAEQlKELEEKLKKYnleelekkaEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1728 REEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETARE-VGNKNAELCELIEFYR----------------NRVEA 1790
Cdd:PRK03918 544 LKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFEsVEELEERLKELEPFYNeylelkdaekelereeKELKK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1791 LERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTEsdqdkERYQKLALDCKILQAKY---RDAKDEIKRCEKK 1867
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR-----EEYLELSRELAGLRAELeelEKRREEIKKTLEK 698
|
570 580 590
....*....|....*....|....*....|...
gi 386764405 1868 IKDQRLEMEGKLEKMKNKMRSLytAEVTRMKEK 1900
Cdd:PRK03918 699 LKEELEEREKAKKELEKLEKAL--ERVEELREK 729
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
798-1429 |
5.70e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 61.66 E-value: 5.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 798 EKRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNINGIIKRNK-------FITSLEVNTEKVKQYITDLEEEafk 870
Cdd:pfam05483 105 ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNAtrhlcnlLKETCARSAEKTKKYEYEREET--- 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 871 rKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNgvNTPQQLGTCMTEFLKMYDQMEv 950
Cdd:pfam05483 182 -RQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEIN--DKEKQVSLLLIQITEKENKMK- 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 951 ryeessSLVEKLTESQAKLEMQVAELQVELEN-KDTNQHSGALIKQLNDTIQNLEK---VNAKLSEDNTVSHTVHSKLNE 1026
Cdd:pfam05483 258 ------DLTFLLEESRDKANQLEEKTKLQDENlKELIEKKDHLTKELEDIKMSLQRsmsTQKALEEDLQIATKTICQLTE 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1027 SLlKAQKELDLRAKIIENLEASErnLSMKLCELKDL----KNKLKSSDEKIAQIkeTYEEQIKALQAKCDMEAKKNEHLE 1102
Cdd:pfam05483 332 EK-EAQMEELNKAKAAHSFVVTE--FEATTCSLEELlrteQQRLEKNEDQLKII--TMELQKKSSELEEMTKFKNNKEVE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1103 RNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTK----LSDDLQRQKES 1178
Cdd:pfam05483 407 LEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKevedLKTELEKEKLK 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1179 GQQLVDNLKvELEKERKELAHVNSAIGAQTK--LSDDLECQK---------ESGQQLVDNLKVELEKERKELAQVKSVIE 1247
Cdd:pfam05483 487 NIELTAHCD-KLLLENKELTQEASDMTLELKkhQEDIINCKKqeermlkqiENLEEKEMNLRDELESVREEFIQKGDEVK 565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1248 AQTKLSDDLQREKESA-----------QQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVEL 1316
Cdd:pfam05483 566 CKLDKSEENARSIEYEvlkkekqmkilENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELEL 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1317 DKERKELAQVNSAFEAQTKL----SDDLQREKESAQQLVD---NLKVELDKE-RKELAQVKSVIEAQTKLSDDLQRQKES 1388
Cdd:pfam05483 646 ASAKQKFEEIIDNYQKEIEDkkisEEKLLEEVEKAKAIADeavKLQKEIDKRcQHKIAEMVALMEKHKHQYDKIIEERDS 725
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 386764405 1389 AQQLVDN-----------LKVELDKERKELAKVKSVIEAQTKLSDDLQRQKE 1429
Cdd:pfam05483 726 ELGLYKNkeqeqssakaaLEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1152-1542 |
5.80e-09 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 61.90 E-value: 5.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1152 RKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKL---SDDLEcqkesgqqlvdnl 1228
Cdd:PRK04863 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIeryQADLE------------- 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1229 kvELEkERkeLAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKveldkerKELAQVNSAFEAQTKLSddLQRQK-----E 1303
Cdd:PRK04863 359 --ELE-ER--LEEQNEVVEEADEQQEENEARAEAAEEEVDELK-------SQLADYQQALDVQQTRA--IQYQQavqalE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1304 SAQQL-------VDNLKVELDKER-KELAQVNSAFEAQTKLS--DDLQREKESAQQLVDNLKVELDkeRKELAQVksvie 1373
Cdd:PRK04863 425 RAKQLcglpdltADNAEDWLEEFQaKEQEATEELLSLEQKLSvaQAAHSQFEQAYQLVRKIAGEVS--RSEAWDV----- 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1374 AQTKLSdDLQRQKESAQQLVdNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEA----QTKLSDDLQRQKE 1449
Cdd:PRK04863 498 ARELLR-RLREQRHLAEQLQ-QLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQlqeeLEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1450 SAQQLVDNLK---VELDKERKELAQVKSV-IEAQ---TKLSDDLQRQKESAQQLVDNLKMELDKERkELAQVKsaigaqt 1522
Cdd:PRK04863 576 EARERRMALRqqlEQLQARIQRLAARAPAwLAAQdalARLREQSGEEFEDSQDVTEYMQQLLERER-ELTVER------- 647
|
410 420
....*....|....*....|
gi 386764405 1523 klsDDLECQKESVQQLVDNL 1542
Cdd:PRK04863 648 ---DELAARKQALDEEIERL 664
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1301-1522 |
5.94e-09 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 60.61 E-value: 5.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1301 QKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKlsd 1380
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1381 DLQRQK------------ESAQQLVDNLKVeldkerkelakVKSVIEAQTKLSDDLQRQKEsaqQLEAQtklsddlQRQK 1448
Cdd:COG3883 94 ALYRSGgsvsyldvllgsESFSDFLDRLSA-----------LSKIADADADLLEELKADKA---ELEAK-------KAEL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386764405 1449 ESAQQLVDNLKVELDKERKELAQvksVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQT 1522
Cdd:COG3883 153 EAKLAELEALKAELEAAKAELEA---QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAA 223
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1231-1711 |
1.23e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1231 ELEKERKELAQVKSVIEAQTklSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQ-QLV 1309
Cdd:COG4913 263 RYAAARERLAELEYLRAALR--LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1310 DNLKVELDKERKELAQVNSAFEAQTKL-----------SDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKL 1378
Cdd:COG4913 341 EQLEREIERLERELEERERRRARLEALlaalglplpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1379 SDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTK-LSDDLQ-RQKESA--------------------QQLEA 1436
Cdd:COG4913 421 LRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAELPfVGELIEvRPEEERwrgaiervlggfaltllvppEHYAA 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1437 ------QTKL------------SDDLQRQKESAQQLVDNLKVELDKER----KELAQVKSVI-----------------E 1477
Cdd:COG4913 501 alrwvnRLHLrgrlvyervrtgLPDPERPRLDPDSLAGKLDFKPHPFRawleAELGRRFDYVcvdspeelrrhpraitrA 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1478 AQTKLS------DDLQRQKE------SAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLV----DN 1541
Cdd:COG4913 581 GQVKGNgtrhekDDRRRIRSryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAeyswDE 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1542 LKV--------ELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREvflvKERLVKEKREFEVKLATLEDIIETLEMRC 1613
Cdd:COG4913 661 IDVasaereiaELEAELERLDASSDDLAALEEQLEELEAELEELEEE----LDELKGEIGRLEKELEQAEEELDELQDRL 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1614 TQMEEERATAYEQinKLENRCQEkdnvkSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMT 1693
Cdd:COG4913 737 EAAEDLARLELRA--LLEERFAA-----ALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDA 809
|
570
....*....|....*...
gi 386764405 1694 EIAEHNQVKDQLAQITDI 1711
Cdd:COG4913 810 DLESLPEYLALLDRLEED 827
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1346-1565 |
1.32e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 59.46 E-value: 1.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1346 SAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDD-- 1423
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1424 --LQRQKESAQQLEA---QTKLSDDLQRqkesaqqlvdnlkveldkerkeLAQVKSVIEAQTKLSDDLQRQKESaqqlVD 1498
Cdd:COG3883 93 raLYRSGGSVSYLDVllgSESFSDFLDR----------------------LSALSKIADADADLLEELKADKAE----LE 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764405 1499 NLKMELDKERKELAQVKSAIGAQTKlsdDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTK 1565
Cdd:COG3883 147 AKKAELEAKLAELEALKAELEAAKA---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1232-1604 |
1.87e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 60.35 E-value: 1.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1232 LEKERKELAQVKSVIEAQTKLSDdLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLS------DDLQRQKESA 1305
Cdd:COG3096 288 LELRRELFGARRQLAEEQYRLVE-MARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKIEryqedlEELTERLEEQ 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1306 QQLVDNLKVELD--KERKELAQvNSAFEAQTKLSD-----DLQ-----------REKESAQQL--VDNLKVELDKERKEL 1365
Cdd:COG3096 367 EEVVEEAAEQLAeaEARLEAAE-EEVDSLKSQLADyqqalDVQqtraiqyqqavQALEKARALcgLPDLTPENAEDYLAA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1366 AQVK------SVIEAQTKLS--DDLQRQKESAQQLVDNLKVELDKERkelakvkSVIEAQTKLSD--DLQRQKESAQQLE 1435
Cdd:COG3096 446 FRAKeqqateEVLELEQKLSvaDAARRQFEKAYELVCKIAGEVERSQ-------AWQTARELLRRyrSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1436 AQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDK---ERKELA 1512
Cdd:COG3096 519 AQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQlraRIKELA 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1513 QVKSA-IGAQ---TKLSDDLECQKESVQQLVDNLKVELEKERkelakvnsafeAQTKLSDDLKLQKEDAQREVflvkERL 1588
Cdd:COG3096 599 ARAPAwLAAQdalERLREQSGEALADSQEVTAAMQQLLERER-----------EATVERDELAARKQALESQI----ERL 663
|
410
....*....|....*.
gi 386764405 1589 VKEKREFEVKLATLED 1604
Cdd:COG3096 664 SQPGGAEDPRLLALAE 679
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1085-1548 |
3.78e-08 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 59.15 E-value: 3.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1085 KALQAKCDmEAKKNEHLERNQNQSLTQLkEDALEncvlMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEA 1164
Cdd:PRK11281 39 ADVQAQLD-ALNKQKLLEAEDKLVQQDL-EQTLA----LLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1165 QT-----KLS-DDLQRQKESGQQlvdnlkvELEKERKELAHVNS-AIGAQTklsddlecQKESGQQLVDNLKVELEKERK 1237
Cdd:PRK11281 113 ETretlsTLSlRQLESRLAQTLD-------QLQNAQNDLAEYNSqLVSLQT--------QPERAQAALYANSQRLQQIRN 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1238 ELaqvKSVIEAQTKLSDDlQREKESAQQLVDNLKVELdkERKELaqvnsafEAQTKLSDDLQRQKESA-------QQLVD 1310
Cdd:PRK11281 178 LL---KGGKVGGKALRPS-QRVLLQAEQALLNAQNDL--QRKSL-------EGNTQLQDLLQKQRDYLtariqrlEHQLQ 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1311 NLKVELDKERKELAQvNSAFEAQTklSDDLQREKESAqqLVdnlkveldkeRKELaqvksviEAQTKLSDDLQRQKESAQ 1390
Cdd:PRK11281 245 LLQEAINSKRLTLSE-KTVQEAQS--QDEAARIQANP--LV----------AQEL-------EINLQLSQRLLKATEKLN 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1391 QLV-DNLKVE--LDKerkeLAKVKSVIEAQTK-------LSDDLQRQKESAQQLEAQTKLSDDlqrqkesaqqlVDNLKV 1460
Cdd:PRK11281 303 TLTqQNLRVKnwLDR----LTQSERNIKEQISvlkgsllLSRILYQQQQALPSADLIEGLADR-----------IADLRL 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1461 ---ELDKERKELAQVKSVIEaqtKLsddLQRQKESAQ-QLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQ 1536
Cdd:PRK11281 368 eqfEINQQRDALFQPDAYID---KL---EAGHKSEVTdEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLL 441
|
490
....*....|..
gi 386764405 1537 QLVDNLKVELEK 1548
Cdd:PRK11281 442 SVSDSLQSTLTQ 453
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1315-1762 |
3.78e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.01 E-value: 3.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1315 ELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVksvieaqtklsdDLQRQKESAQQLVD 1394
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL------------PLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1395 NLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSD-----DLQRQKESAQQLVDNLKVELDKERKEL 1469
Cdd:COG4717 143 ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATeeelqDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1470 AQVKSVIEA--QTKLSDDLQRQKESAQQ----------LVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQ 1537
Cdd:COG4717 223 EELEEELEQleNELEAAALEERLKEARLllliaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1538 LVDNLKVELEK---ERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREfeVKLATLEDIIETLEMRCT 1614
Cdd:COG4717 303 EAEELQALPALeelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE--LQLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1615 QMEEEraTAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLDfvqsRLMTE 1694
Cdd:COG4717 381 VEDEE--ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELE----ELREE 454
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764405 1695 IAEHNQvkdQLAQITDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILR 1762
Cdd:COG4717 455 LAELEA---ELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLE 519
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1387-1960 |
4.79e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 4.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1387 ESAQQLVDNLKvELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDL-----QRQKESAQQLVDNLKVE 1461
Cdd:COG4913 225 EAADALVEHFD-DLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEAELEELRAE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1462 LDKERKELAQVKSVIEAQTKLSDDLQRQKESAQ-QLVDNLKMELDKERKELAQVKSAIgaqtklsddlecqkESVQQLVD 1540
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRR--------------ARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1541 NLKVELEKERKELAKVNSAFEAqtkLSDDLKLQKEDAQREVFLVKERLVKEKREfevkLATLEDIIETLEMRCTQMEEER 1620
Cdd:COG4913 370 ALGLPLPASAEEFAALRAEAAA---LLEALEEELEALEEALAEAEAALRDLRRE----LRELEAEIASLERRKSNIPARL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1621 ATAYEQINK---------------LENRCQEKD------------------------------NVKSSQLQVETFKVECL 1655
Cdd:COG4913 443 LALRDALAEalgldeaelpfvgelIEVRPEEERwrgaiervlggfaltllvppehyaaalrwvNRLHLRGRLVYERVRTG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1656 HHQLKSEMATHNSLVedlnRKLAEKVSKLdfvQSRLMTEIAEHNQVK-----DQLAQ----IT--------------DIP 1712
Cdd:COG4913 523 LPDPERPRLDPDSLA----GKLDFKPHPF---RAWLEAELGRRFDYVcvdspEELRRhpraITragqvkgngtrhekDDR 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1713 KVVELQH--------RLEAETAEREEAQNKLAVVTGRLDEITRELDNAR---------LEHGAQILRMEETAREVGNKNA 1775
Cdd:COG4913 596 RRIRSRYvlgfdnraKLAALEAELAELEEELAEAEERLEALEAELDALQerrealqrlAEYSWDEIDVASAEREIAELEA 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1776 ELCELIEFyRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKI--LQAK 1853
Cdd:COG4913 676 ELERLDAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRalLEER 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1854 YRDAKDeikrcEKKIKDQRLEMEGKLEKMKNKMRSLYTAEVTRMKEKQERDAAkSASELEALTAQNAKYEEHTRKLSNQ- 1932
Cdd:COG4913 755 FAAALG-----DAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPA-ETADLDADLESLPEYLALLDRLEEDg 828
|
650 660
....*....|....*....|....*...
gi 386764405 1933 IVRLNEKILEQQKQHAIisTNLRHLQMQ 1960
Cdd:COG4913 829 LPEYEERFKELLNENSI--EFVADLLSK 854
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
855-1470 |
4.93e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.92 E-value: 4.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 855 EKVKQYITDLE--EEAFKRKQKVVQLENTLSKEQSnaKEMAQRLDIAQQ--EIKDYHVEAIRFINTIRDRLQQdfngvnT 930
Cdd:PRK03918 148 EKVVRQILGLDdyENAYKNLGEVIKEIKRRIERLE--KFIKRTENIEELikEKEKELEEVLREINEISSELPE------L 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 931 PQQLGTCMTEfLKMYDQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTNqhsgalIKQLNDTIQNLEKVNAKL 1010
Cdd:PRK03918 220 REELEKLEKE-VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE------IEELEEKVKELKELKEKA 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1011 SEdntvshtvHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAK 1090
Cdd:PRK03918 293 EE--------YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1091 CDMEAKKNEhLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAY-------- 1162
Cdd:PRK03918 365 EEAKAKKEE-LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcgr 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1163 ------------EAQTKLSDDLQRQKESGQQLVDnLKVELEKERKELAHvNSAIGAQTKLSDDLECQKESGQQLvdNLKv 1230
Cdd:PRK03918 444 elteehrkelleEYTAELKRIEKELKEIEEKERK-LRKELRELEKVLKK-ESELIKLKELAEQLKELEEKLKKY--NLE- 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1231 ELEKERKELAQVKsviEAQTKLSDDLQREKESAQQLVdnlkvELDKERKELaqVNSAFEAQTKLSDDLQRQKESAQQLVD 1310
Cdd:PRK03918 519 ELEKKAEEYEKLK---EKLIKLKGEIKSLKKELEKLE-----ELKKKLAEL--EKKLDELEEELAELLKELEELGFESVE 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1311 nlkvELDKERKELaqvNSAFEAQTKLSDdLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQ-KESA 1389
Cdd:PRK03918 589 ----ELEERLKEL---EPFYNEYLELKD-AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEE 660
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1390 QQLVDNLKVELDKE----RKELAKVKSVIEAQTKLSDDLQRQKES----AQQLEAQTKLSDDLQRQKESAQQLVDNLKVE 1461
Cdd:PRK03918 661 YEELREEYLELSRElaglRAELEELEKRREEIKKTLEKLKEELEErekaKKELEKLEKALERVEELREKVKKYKALLKER 740
|
....*....
gi 386764405 1462 LDKERKELA 1470
Cdd:PRK03918 741 ALSKVGEIA 749
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1345-1555 |
5.96e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 5.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1345 ESAQQLVDNLK------VELDKERKE---LAQVKSVIEAQTKLSDDLQRQKES--------AQQLVDNLKVELDKERKEL 1407
Cdd:COG4913 225 EAADALVEHFDdlerahEALEDAREQielLEPIRELAERYAAARERLAELEYLraalrlwfAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1408 AKVKsviEAQTKLSDDLQRQKESAQQLEAQtkLSDDLQRQKESAQQLVDNLKVELDK---ERKELAQVKSVIEAQTKLS- 1483
Cdd:COG4913 305 ARLE---AELERLEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEErerRRARLEALLAALGLPLPASa 379
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386764405 1484 DDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAK 1555
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAE 451
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1125-1349 |
7.12e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 57.15 E-value: 7.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1125 TKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAI 1204
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1205 ---GAQTKLSDDLEcQKESGQQLVDNlkveLEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKEL 1281
Cdd:COG3883 96 yrsGGSVSYLDVLL-GSESFSDFLDR----LSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764405 1282 AQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQ 1349
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1447-1948 |
1.11e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 57.54 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1447 QKESAQQLVDNLKVEL-DKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKS---AIGAQT 1522
Cdd:pfam12128 252 TLESAELRLSHLHFGYkSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSeleALEDQH 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1523 K--LSDDLECQKESVQQLvDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQ-KEDAQREVFLVKERLVKEKREFEVKL 1599
Cdd:pfam12128 332 GafLDADIETAAADQEQL-PSWQSELENLEERLKALTGKHQDVTAKYNRRRSKiKEQNNRDIAGIKDKLAKIREARDRQL 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1600 ATLEDIIETLEMRC-TQMEEERATAYEQINKLENRCQE-KDNVKSSQ------LQVETFKVECLHHQLKSEMATHNslVE 1671
Cdd:pfam12128 411 AVAEDDLQALESELrEQLEAGKLEFNEEEYRLKSRLGElKLRLNQATatpellLQLENFDERIERAREEQEAANAE--VE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1672 DLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITD--IPKVVELQHRLEAETAEREEAQNKL-------------- 1735
Cdd:pfam12128 489 RLQSELRQARKRRDQASEALRQASRRLEERQSALDELELqlFPQAGTLLHFLRKEAPDWEQSIGKVispellhrtdldpe 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1736 ---AVVTGRLDEITRELDNARLEHgAQILRMEETAREvgnKNAELCELIEFYRNRVEALERLLLASNQELEELnsiqsnq 1812
Cdd:pfam12128 569 vwdGSVGGELNLYGVKLDLKRIDV-PEWAASEEELRE---RLDKAEEALQSAREKQAAAEEQLVQANGELEKA------- 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1813 aegvrDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAkyrdakdeIKRCEKKIKDQRLEMEGKLEKMKNKMRSlyta 1892
Cdd:pfam12128 638 -----SREETFARTALKNARLDLRRLFDEKQSEKDKKNKA--------LAERKDSANERLNSLEAQLKQLDKKHQA---- 700
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1893 evtrMKEKQERDAaksaseLEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHA 1948
Cdd:pfam12128 701 ----WLEEQKEQK------REARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAK 746
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1291-1543 |
1.40e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 56.95 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1291 QTKLSDDLQRQKES----AQQLVDNLKVEL------------DKERKELAQVNSAFeAQTKLSDDLQREKESAQQLVDNL 1354
Cdd:COG3206 102 KLNLDEDPLGEEASreaaIERLRKNLTVEPvkgsnvieisytSPDPELAAAVANAL-AEAYLEQNLELRREEARKALEFL 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1355 KVELDKERKELAQVKSVIEA--QTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAqtkLSDDLQRQKESAQ 1432
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAA---LRAQLGSGPDALP 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1433 QLEAQTKLSDDLQRQKESAQQLVDNLKVELDKE------RKELAQVKSVIEAQT-KLSDDLQRQKESAQQLVDNLKMELD 1505
Cdd:COG3206 258 ELLQSPVIQQLRAQLAELEAELAELSARYTPNHpdvialRAQIAALRAQLQQEAqRILASLEAELEALQAREASLQAQLA 337
|
250 260 270
....*....|....*....|....*....|....*...
gi 386764405 1506 KERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLK 1543
Cdd:COG3206 338 QLEARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
1259-1549 |
1.82e-07 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 55.70 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1259 EKESAQQLVDNLKVELDKERkELAQVNSAFEAQTKLS-------------------DDLQRQKESAQQLVDNLKVELDKE 1319
Cdd:pfam00038 2 EKEQLQELNDRLASYIDKVR-FLEQQNKLLETKISELrqkkgaepsrlyslyekeiEDLRRQLDTLTVERARLQLELDNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1320 RKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNL---KVELDKE----RKELAQVKSVIEAQTKlsdDLQRQKESAQQL 1392
Cdd:pfam00038 81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEAtlaRVDLEAKieslKEELAFLKKNHEEEVR---ELQAQVSDTQVN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1393 V---DNLKVELDkerKELAKVKSVIEAQTKLSddlqrQKESAQQLEAQTklsDDLQRQKESAQQLVDNLKVELDKERKEL 1469
Cdd:pfam00038 158 VemdAARKLDLT---SALAEIRAQYEEIAAKN-----REEAEEWYQSKL---EELQQAAARNGDALRSAKEEITELRRTI 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1470 AQVKSVIEAQTKLSDDLQRQKESAQqlvDNLKMELDKERKELAQVKSAIgaqTKLSDDLECQKESVQQLVdNLKVELEKE 1549
Cdd:pfam00038 227 QSLEIELQSLKKQKASLERQLAETE---ERYELQLADYQELISELEAEL---QETRQEMARQLREYQELL-NVKLALDIE 299
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1273-1636 |
2.82e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 2.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1273 ELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELaQVNSAFEAQTKLSDDLQREKESAQQLVD 1352
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL-QLLPLYQELEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1353 NLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQ 1432
Cdd:COG4717 154 RLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1433 QLEAQTKLSDDLQRQKESAQQ------LVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDK 1506
Cdd:COG4717 234 NELEAAALEERLKEARLLLLIaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1507 ---ERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELaKVNSAFEAQTKLSDDLKLQKEDAQREVFL 1583
Cdd:COG4717 314 eelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL-QLEELEQEIAALLAEAGVEDEEELRAALE 392
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 386764405 1584 VKERLVKEKREFEVKLATLEDIIETLEMRC-----TQMEEERATAYEQINKLENRCQE 1636
Cdd:COG4717 393 QAEEYQELKEELEELEEQLEELLGELEELLealdeEELEEELEELEEELEELEEELEE 450
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
1145-1533 |
3.25e-07 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 55.80 E-value: 3.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1145 KLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHV--------------------NSAI 1204
Cdd:pfam05701 41 ELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKRLIEELKLNLERAQTEEAQAkqdselaklrveemeqgiadEASV 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1205 GAQTKlsddLECQKESGQQLVDNL---KVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKEL 1281
Cdd:pfam05701 121 AAKAQ----LEVAKARHAAAVAELksvKEELESLRKEYASLVSERDIAIKRAEEAVSASKEIEKTVEELTIELIATKESL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1282 AQVNSA-FEAQT-KLSDDLQRQKESAqqlvdNLKVELDKERKELAQVNSafeaQTKLSDDLQREKESAQQLVDNLKVEL- 1358
Cdd:pfam05701 197 ESAHAAhLEAEEhRIGAALAREQDKL-----NWEKELKQAEEELQRLNQ----QLLSAKDLKSKLETASALLLDLKAELa 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1359 DKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKElakVKSVIEAQTKLSDDLQRQKESAqqleaqt 1438
Cdd:pfam05701 268 AYMESKLKEEADGEGNEKKTSTSIQAALASAKKELEEVKANIEKAKDE---VNCLRVAAASLRSELEKEKAEL------- 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1439 klsDDLQRQKESAQQLVDNLKVELDKERKELAQV----KSVIEAQTKLSDDLQ---RQKESAQQLVDNLKMELDKERKEL 1511
Cdd:pfam05701 338 ---ASLRQREGMASIAVSSLEAELNRTKSEIALVqakeKEAREKMVELPKQLQqaaQEAEEAKSLAQAAREELRKAKEEA 414
|
410 420
....*....|....*....|..
gi 386764405 1512 AQVKSAigAQTKLSDDLECQKE 1533
Cdd:pfam05701 415 EQAKAA--ASTVESRLEAVLKE 434
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
968-1590 |
3.80e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.95 E-value: 3.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 968 KLEMQVAELQVELEnkDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLN--ESLLKAQKEL---DLRAKIi 1042
Cdd:pfam01576 409 KLEGQLQELQARLS--ESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSslESQLQDTQELlqeETRQKL- 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1043 enleaserNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCdMEAKKnehlernqnqsltQLKEDALencvl 1122
Cdd:pfam01576 486 --------NLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQL-SDMKK-------------KLEEDAG----- 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1123 MSTKLEELQAKLQegqqlvdsqkleldmnrKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKelaHVNS 1202
Cdd:pfam01576 539 TLEALEEGKKRLQ-----------------RELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQ---LVSN 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1203 AIGAQTKLSDDLECQKESGQQLVDnlkvelEKERKElAQVKsviEAQTK-LSddLQREKESAQQLVDNLKVELDKERKEL 1281
Cdd:pfam01576 599 LEKKQKKFDQMLAEEKAISARYAE------ERDRAE-AEAR---EKETRaLS--LARALEEALEAKEELERTNKQLRAEM 666
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1282 AQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSA--------------FEAQTKLSDDLQREKESA 1347
Cdd:pfam01576 667 EDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAklrlevnmqalkaqFERDLQARDEQGEEKRRQ 746
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1348 -QQLVDNLKVELDKERK--------------ELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKElakvKS 1412
Cdd:pfam01576 747 lVKQVRELEAELEDERKqraqavaakkklelDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARAS----RD 822
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1413 VIEAQTKLSDdlqrqkESAQQLEAQT-KLSDDL---QRQKESAQQLVDNLKVEL------------DKERKE--LAQVKS 1474
Cdd:pfam01576 823 EILAQSKESE------KKLKNLEAELlQLQEDLaasERARRQAQQERDELADEIasgasgksalqdEKRRLEarIAQLEE 896
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1475 VIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLEC------------QKESVQQL---V 1539
Cdd:pfam01576 897 ELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAklqemegtvkskFKSSIAALeakI 976
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 386764405 1540 DNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVK 1590
Cdd:pfam01576 977 AQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEK 1027
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
573-1104 |
7.14e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.03 E-value: 7.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 573 NNDLELDNERLN---DKCAELKSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINLENMLSQIADKEASAASH 649
Cdd:TIGR04523 109 NSEIKNDKEQKNkleVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKN 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 650 AQHLKQcgELLRAKYEVcrNELIAKNAAQDELVRMMmvpdgETLNGRVRQLID-LEMMHDEHNKMYAQMLK---QLNELS 725
Cdd:TIGR04523 189 IDKIKN--KLLKLELLL--SNLKKKIQKNKSLESQI-----SELKKQNNQLKDnIEKKQQEINEKTTEISNtqtQLNQLK 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 726 AKHDNMthshLDFVKRTEIELETKNAQImafDEHNNHFDRFLTRIFTLlrsRNCPKSTTMGSATNFLESMH-----IEKR 800
Cdd:TIGR04523 260 DEQNKI----KKQLSEKQKELEQNNKKI---KELEKQLNQLKSEISDL---NNQKEQDWNKELKSELKNQEkkleeIQNQ 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 801 FENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQningIIKRNKFITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLEN 880
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQLKKELTNSESENSEKQRE----LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 881 TLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDfngvntpqqlgtcmTEFLKMYDQMEVRYEESSSLVE 960
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQD--------------SVKELIIKNLDNTRESLETQLK 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 961 KLTESQAKLEMQVAELQVELENKDTNqhsgalIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKEL-DLRA 1039
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQKELKSKEKE------LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKIsDLED 545
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386764405 1040 KII--------ENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERN 1104
Cdd:TIGR04523 546 ELNkddfelkkENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1058-1287 |
7.28e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 7.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1058 ELKDLKNKLKSSDEKIAQIK---ETYEEQIKALQAKCDMEAKKNEHLERNQNQSLTQLKEdalencvlMSTKLEELQAKL 1134
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKkeeKALLKQLAALERRIAALARRIRALEQELAALEAELAE--------LEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1135 QEGQQLVDSQKLELDMN--RKELALVKSAYEAQtklsdDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSD 1212
Cdd:COG4942 100 EAQKEELAELLRALYRLgrQPPLALLLSPEDFL-----DAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386764405 1213 DLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSA 1287
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1261-1479 |
1.14e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1261 ESAQQLVDNLK------VELDKERKE---LAQVNSAFEAQTKLSDDLQRQKES--------AQQLVDNLKVELDKERKEL 1323
Cdd:COG4913 225 EAADALVEHFDdlerahEALEDAREQielLEPIRELAERYAAARERLAELEYLraalrlwfAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1324 AQVNSAFEAQTKLSDDLQREKESAQQL--------VDNLKVELDKERKELAQVksvieaqtklsddlQRQKESAQQLVDN 1395
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQirgnggdrLEQLEREIERLERELEER--------------ERRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1396 LKVELDKERKELAKVKSVIEAqtkLSDDLQRQKESAQQleAQTKLSDDLQRQKESAQqlvdnlkvELDKERKELAQVKSV 1475
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAA---LLEALEEELEALEE--ALAEAEAALRDLRRELR--------ELEAEIASLERRKSN 437
|
....
gi 386764405 1476 IEAQ 1479
Cdd:COG4913 438 IPAR 441
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1103-1307 |
1.35e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 53.30 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1103 RNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAY-EAQTKLSDDLQRQKESGQQ 1181
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIeERREELGERARALYRSGGS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1182 lVDNLKVELEKErkELAHVNSAIGAQTKLSDD----LECQKESgQQLVDNLKVELEKERKELAQVKSVIEAQTKlsdDLQ 1257
Cdd:COG3883 102 -VSYLDVLLGSE--SFSDFLDRLSALSKIADAdadlLEELKAD-KAELEAKKAELEAKLAELEALKAELEAAKA---ELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 386764405 1258 REKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQ 1307
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
1176-1465 |
1.70e-06 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 52.62 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1176 KESGQQLVDNLKVELEKERkELAHVNSAIgaQTKLSDdLECQKESGQQLVDNLKvelekeRKELAQVKSVIEAQTKLSDD 1255
Cdd:pfam00038 3 KEQLQELNDRLASYIDKVR-FLEQQNKLL--ETKISE-LRQKKGAEPSRLYSLY------EKEIEDLRRQLDTLTVERAR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1256 LQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSD-------DLQRQKESAQQLVDNLKVELDKERKELAQVNS 1328
Cdd:pfam00038 73 LQLELDNLRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDeatlarvDLEAKIESLKEELAFLKKNHEEEVRELQAQVS 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1329 afEAQTKLSDDLQREKESAQQLVD---NLKVELDKERKEL-----AQVKSVIEAQTKLSDDLQRQKESAQQL---VDNLK 1397
Cdd:pfam00038 153 --DTQVNVEMDAARKLDLTSALAEiraQYEEIAAKNREEAeewyqSKLEELQQAAARNGDALRSAKEEITELrrtIQSLE 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1398 VELDKERKELAKV-KSVIEAQTKLSDDLQRQKESAQQLEAQ-TKLSDDLQRQKESAQQLVdNLKVELDKE 1465
Cdd:pfam00038 231 IELQSLKKQKASLeRQLAETEERYELQLADYQELISELEAElQETRQEMARQLREYQELL-NVKLALDIE 299
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1255-1409 |
2.10e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 51.46 E-value: 2.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1255 DLQR---EKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSA-- 1329
Cdd:COG1579 11 DLQEldsELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNke 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1330 FEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAK 1409
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
866-1627 |
2.59e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.42 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 866 EEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMy 945
Cdd:PRK04863 286 EEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQD----YQAASDHLNLVQTALRQQEKIERYQADLEEL- 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 946 dqmEVRYEESSSLVEKLTESQAKLEMQVAELQVELENkdtnqhsgaLIKQLNDTIQNLEkvnaklsedntVSHTVHSKLN 1025
Cdd:PRK04863 361 ---EERLEEQNEVVEEADEQQEENEARAEAAEEEVDE---------LKSQLADYQQALD-----------VQQTRAIQYQ 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1026 ES---LLKAQKELDLRAKIIENLEASERNLSMKLCE----LKDLKNKLKSSDEkiaqIKETYEeqiKALQAKCdmeaKKN 1098
Cdd:PRK04863 418 QAvqaLERAKQLCGLPDLTADNAEDWLEEFQAKEQEateeLLSLEQKLSVAQA----AHSQFE---QAYQLVR----KIA 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1099 EHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDSQ------------KLELDMNRKElaLVKSAYEAQT 1166
Cdd:PRK04863 487 GEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQqraerllaefckRLGKNLDDED--ELEQLQEELE 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1167 KLSDDLQRQKESGQQLVDNLKVELEK---ERKELAHVNSA-IGAQTKLSDDLEC---QKESGQQLVDNLKVELEKERkEL 1239
Cdd:PRK04863 565 ARLESLSESVSEARERRMALRQQLEQlqaRIQRLAARAPAwLAAQDALARLREQsgeEFEDSQDVTEYMQQLLERER-EL 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1240 AQVKSVIEAQtKLSDDLQREKESA---------QQLVDNLKVELDKERKELAQVNSA--FEA------QTKLSDDLQRQK 1302
Cdd:PRK04863 644 TVERDELAAR-KQALDEEIERLSQpggsedprlNALAERFGGVLLSEIYDDVSLEDApyFSAlygparHAIVVPDLSDAA 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1303 ESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRE-----------------KESAQQLVDNLKVELDKERKEL 1365
Cdd:PRK04863 723 EQLAGLEDCPEDLYLIEGDPDSFDDSVFSVEELEKAVVVKIadrqwrysrfpevplfgRAAREKRIEQLRAEREELAERY 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1366 AQVKSVIEaqtklsdDLQRQKESAQQLVD-NLKVELDKE-RKELAKVKSVI-EAQTKLSD---DLQRQKESAQQLEAQTK 1439
Cdd:PRK04863 803 ATLSFDVQ-------KLQRLHQAFSRFIGsHLAVAFEADpEAELRQLNRRRvELERALADhesQEQQQRSQLEQAKEGLS 875
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1440 LSDDLQRQ-----KESAQQLVDNLKVELDKERK-------------ELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLK 1501
Cdd:PRK04863 876 ALNRLLPRlnllaDETLADRVEEIREQLDEAEEakrfvqqhgnalaQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAK 955
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1502 M------ELDKERKELAQVKSA--IGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVN-------SAFEAQTKL 1566
Cdd:PRK04863 956 QqafaltEVVQRRAHFSYEDAAemLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNqvlaslkSSYDAKRQM 1035
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1567 SDDLK--LQK------EDAQREVFLVKERLVKE-------KREFEVKLATLEDIIETLEMRCTQMEEERATAYEQI 1627
Cdd:PRK04863 1036 LQELKqeLQDlgvpadSGAEERARARRDELHARlsanrsrRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQV 1111
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
1219-1627 |
3.07e-06 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 52.72 E-value: 3.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1219 ESGQQLVDNLKVELEKERKELAQVKSVIE-AQTKLsddlqreKESAQQLVDNLKVELDkerkelAQVNSAFEAQTKLSDD 1297
Cdd:pfam05701 73 ESTKRLIEELKLNLERAQTEEAQAKQDSElAKLRV-------EEMEQGIADEASVAAK------AQLEVAKARHAAAVAE 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1298 LQRQKEsaqqlvdnlkvELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELD--KERKELAQVKSVIEAQ 1375
Cdd:pfam05701 140 LKSVKE-----------ELESLRKEYASLVSERDIAIKRAEEAVSASKEIEKTVEELTIELIatKESLESAHAAHLEAEE 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1376 TKLSDDLQRQKESAqqlvdNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEA------QTKLSDDLQRQKE 1449
Cdd:pfam05701 209 HRIGAALAREQDKL-----NWEKELKQAEEELQRLNQQLLSAKDLKSKLETASALLLDLKAelaaymESKLKEEADGEGN 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1450 SAQQLVDnLKVELDKERKELAQVKSVIEaqtKLSDDLQRQKESAQqlvdNLKMELDKERKELAQVKsaigaqtklsddle 1529
Cdd:pfam05701 284 EKKTSTS-IQAALASAKKELEEVKANIE---KAKDEVNCLRVAAA----SLRSELEKEKAELASLR-------------- 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1530 cQKESVQQL-VDNLKVELEKERKELAKVNS-AFEAQTKLSD-DLKLQK-----EDAQREVFLVKERLVKEKREFEVKLAT 1601
Cdd:pfam05701 342 -QREGMASIaVSSLEAELNRTKSEIALVQAkEKEAREKMVElPKQLQQaaqeaEEAKSLAQAAREELRKAKEEAEQAKAA 420
|
410 420
....*....|....*....|....*...
gi 386764405 1602 lediIETLEMR--CTQMEEERATAYEQI 1627
Cdd:pfam05701 421 ----ASTVESRleAVLKEIEAAKASEKL 444
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1175-1717 |
3.27e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 52.77 E-value: 3.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1175 QKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQKES----GQQLVDNLK---VELEKERKELAQVKSVIE 1247
Cdd:COG5022 823 QKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETiylqSAQRVELAErqlQELKIDVKSISSLKLVNL 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1248 AQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQvnsafEAQTKLSDDLQRQKESAQQlvdnlkvELDKERKELAQVN 1327
Cdd:COG5022 903 ELESEIIELKKSLSSDLIENLEFKTELIARLKKLLN-----NIDLEEGPSIEYVKLPELN-------KLHEVESKLKETS 970
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1328 SAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKElaqvKSVIEAQTKLSDDLQRQKESAQQLVDNLKVElDKERKEL 1407
Cdd:COG5022 971 EEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQ----YGALQESTKQLKELPVEVAELQSASKIISSE-STELSIL 1045
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1408 AKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKE----LAQVKSVIEAQTKLS 1483
Cdd:COG5022 1046 KPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRnlvkPANVLQFIVAQMIKL 1125
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1484 DDLQRQKESAQQLVDNLKME---LDKERKELAQVKSAIGAQTKLSDDLECQKEsvqqlvdnlkvelekerKELAKVNSAF 1560
Cdd:COG5022 1126 NLLQEISKFLSQLVNTLEPVfqkLSVLQLELDGLFWEANLEALPSPPPFAALS-----------------EKRLYQSALY 1188
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1561 EAQTKLSD-DLKLQKEDAQREVFLVKERLVkekREFEVKLATLEDIIETLEMRCTQMEEERA-----TAYEQINKLENRC 1634
Cdd:COG5022 1189 DEKSKLSSsEVNDLKNELIALFSKIFSGWP---RGDKLKKLISEGWVPTEYSTSLKGFNNLNkkfdtPASMSNEKLLSLL 1265
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1635 QEKDNVKSSQLQVETFKVECLHHQLK-SEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEH--NQVKDQLAQITDI 1711
Cdd:COG5022 1266 NSIDNLLSSYKLEEEVLPATINSLLQyINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFeiSDVDEELEELIQA 1345
|
....*.
gi 386764405 1712 PKVVEL 1717
Cdd:COG5022 1346 VKVLQL 1351
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1419-1633 |
3.60e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 3.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1419 KLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDnLKVELDKERKELAQVKSVIEAQTklSDDLQRQKESAQQLVD 1498
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQIELLEPIRE-LAERYAAARERLAELEYLRAALR--LWFAQRRLELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1499 NLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQ-QLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDA 1577
Cdd:COG4913 299 ELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPAS 378
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1578 QREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENR 1633
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1358-1885 |
3.78e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 3.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1358 LDKERKELAQVKSVIEAqtKLSDDLQRQKESAQQLVDNLKVELDK--ERKELAKvksviEAQTKLSDDLQRQKESAQQLE 1435
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIERyeEQREQAR-----ETRDEADEVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1436 AQTKLSDDLQRQKESAQQLVDNLK---VELDKERKELAQVKSVIEAQTKLSDdlqRQKESAQQLVDNLKMELDKERKELA 1512
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAeevRDLRERLEELEEERDDLLAEAGLDD---ADAEAVEARREELEDRDEELRDRLE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1513 QVKSAIGAQTKLS-------DDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAqrevflvk 1585
Cdd:PRK02224 332 ECRVAAQAHNEEAeslredaDDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDA-------- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1586 erlvkekrefEVKLATLEDIIETLEmrctqmeEERATAYEQINKLENRCQEKDNV--KSSQLQVETFKVECLHhqlKSEM 1663
Cdd:PRK02224 404 ----------PVDLGNAEDFLEELR-------EERDELREREAELEATLRTARERveEAEALLEAGKCPECGQ---PVEG 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1664 ATHNSLVEDLNrklaEKVSKLDfvqSRLMTEIAEHNQVKDQLAQITDIpkvVELQHRLEAETAEREEAQNKLAVVTGRLD 1743
Cdd:PRK02224 464 SPHVETIEEDR----ERVEELE---AELEDLEEEVEEVEERLERAEDL---VEAEDRIERLEERREDLEELIAERRETIE 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1744 EitRELDNARLEHGAQILRME-ETAREVGnknAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQAEgVRDLGDT 1822
Cdd:PRK02224 534 E--KRERAEELRERAAELEAEaEEKREAA---AEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAA-IADAEDE 607
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386764405 1823 YSA-AEGRQTESDQDKERYQKLA--------LDCKILQAKYRDAKDEIKRCEKKIKdqrlEMEGKLEKMKNK 1885
Cdd:PRK02224 608 IERlREKREALAELNDERRERLAekrerkreLEAEFDEARIEEAREDKERAEEYLE----QVEEKLDELREE 675
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
965-1360 |
4.87e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.22 E-value: 4.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 965 SQAKLEMQVAELQvelENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVhSKLNESLLKAQKELD-LRAKIIE 1043
Cdd:PRK11281 37 TEADVQAQLDALN---KQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQL-AQAPAKLRQAQAELEaLKDDNDE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1044 NLEASERNLSmklceLKDLKNKLKSSDEKIAQIKE---TYEEQIKALQAKcdmeakknehLERNQNQ---SLTQLKEdal 1117
Cdd:PRK11281 113 ETRETLSTLS-----LRQLESRLAQTLDQLQNAQNdlaEYNSQLVSLQTQ----------PERAQAAlyaNSQRLQQ--- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1118 ENCVLMSTKLE------ELQAKLQEGQQLVDSQkleLDMNRKELA-------LVKSAYEAQTKLSDDLQRQKESGQQLVD 1184
Cdd:PRK11281 175 IRNLLKGGKVGgkalrpSQRVLLQAEQALLNAQ---NDLQRKSLEgntqlqdLLQKQRDYLTARIQRLEHQLQLLQEAIN 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1185 NLKVEL-EKERKELAHVNSAIGAQT------------KLSDDLECQKESGQQLV-DNLKVELEKERkeLAQVKSVIEAQT 1250
Cdd:PRK11281 252 SKRLTLsEKTVQEAQSQDEAARIQAnplvaqeleinlQLSQRLLKATEKLNTLTqQNLRVKNWLDR--LTQSERNIKEQI 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1251 K-------LSDDLQREKES----------AQQLVDnLKV---ELDKERKELAQVNSAFEaqtKLsddLQRQKESAQ-QLV 1309
Cdd:PRK11281 330 SvlkgsllLSRILYQQQQAlpsadlieglADRIAD-LRLeqfEINQQRDALFQPDAYID---KL---EAGHKSEVTdEVR 402
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 386764405 1310 DNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDK 1360
Cdd:PRK11281 403 DALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQ 453
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1433-1631 |
6.83e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 6.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1433 QLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELA 1512
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1513 QVKSAIGA------QTKLSDDLEcQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREvflvKE 1586
Cdd:COG3883 97 RSGGSVSYldvllgSESFSDFLD-RLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA----KA 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 386764405 1587 RLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLE 1631
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
591-1522 |
7.12e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.98 E-value: 7.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 591 KSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINLENMLSQIADKEASAASHAQHLKQCGELLRakyeVCRNe 670
Cdd:TIGR01612 557 KKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKNEYIKKAIDLKK----IIEN- 631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 671 liaKNAAQDELVRM--MMVPDGETLNGRVRQLIDLEMmhdehNKMYAQMLKQL-NELSAkhdnmthshldFVKRTEIELE 747
Cdd:TIGR01612 632 ---NNAYIDELAKIspYQVPEHLKNKDKIYSTIKSEL-----SKIYEDDIDALyNELSS-----------IVKENAIDNT 692
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 748 TKNAQImafDEHNNHFDRFLTRIFTLLRSRNCPKSTTMGSATNFLESMHIEkrfenIEMLIEGQLlsADDLKRELDDLRS 827
Cdd:TIGR01612 693 EDKAKL---DDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVE-----IKKHIHGEI--NKDLNKILEDFKN 762
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 828 KNEELAkQNINGIIKRNkfitslevntekvkqyitdleEEAFKRKQKVVQLENTLSkEQSNAKemaqrlDIAQQEIKDYH 907
Cdd:TIGR01612 763 KEKELS-NKINDYAKEK---------------------DELNKYKSKISEIKNHYN-DQINID------NIKDEDAKQNY 813
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 908 VEAIRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMYDQMEVRYEES-SSLVEKLTESQAKLEMQVAELQVELENKDTN 986
Cdd:TIGR01612 814 DKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKiDSEHEQFAELTNKIKAEISDDKLNDYEKKFN 893
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 987 QhSGALIKQLNDTIQ-------NLEKVNA--KLSEDNTVS----HTVHSKLNESLLKaqkeldlRAKIIENLEASErnls 1053
Cdd:TIGR01612 894 D-SKSLINEINKSIEeeyqninTLKKVDEyiKICENTKESiekfHNKQNILKEILNK-------NIDTIKESNLIE---- 961
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1054 mklcelKDLKNKLKSS-DEKIAQIKETYEEqikalQAKCDMEAKKNEHLernqnQSLTQLKEDalencvLMSTKLEELQA 1132
Cdd:TIGR01612 962 ------KSYKDKFDNTlIDKINELDKAFKD-----ASLNDYEAKNNELI-----KYFNDLKAN------LGKNKENMLYH 1019
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1133 KLQEGQQLVDS--QKLElDMNRK----ELALVKSAYeaqtKLSDDLqrQKESGQQLVDNLKVELEKERKELAHVNSaIGA 1206
Cdd:TIGR01612 1020 QFDEKEKATNDieQKIE-DANKNipniEIAIHTSIY----NIIDEI--EKEIGKNIELLNKEILEEAEINITNFNE-IKE 1091
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1207 QTKLSDDLECQKESGQQLVDnlkvELEKERKELAQVKSVIEAQTKlsdDLQREKESAQQLVDNLKVELDKERKelaqvns 1286
Cdd:TIGR01612 1092 KLKHYNFDDFGKEENIKYAD----EINKIKDDIKNLDQKIDHHIK---ALEEIKKKSENYIDEIKAQINDLED------- 1157
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1287 afEAQTKLSDDLQRQKESAQQlvdNLKVELDKERKELAQVNSAFEAQTKLSDD---LQREKESAQQLVDNL-KVELDKER 1362
Cdd:TIGR01612 1158 --VADKAISNDDPEEIEKKIE---NIVTKIDKKKNIYDEIKKLLNEIAEIEKDktsLEEVKGINLSYGKNLgKLFLEKID 1232
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1363 KELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKeRKELAKVKSVIEAQTKLSDDLQRQKESAQQL-EAQTKLS 1441
Cdd:TIGR01612 1233 EEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDI-KAEMETFNISHDDDKDHHIISKKHDENISDIrEKSLKII 1311
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1442 DDLQRQ-------KESAQQLVDNLK--VELDKERKELAQVKSVIEAQT--KLSDDLQRQKESAQQLVDNLKMELDKERKE 1510
Cdd:TIGR01612 1312 EDFSEEsdindikKELQKNLLDAQKhnSDINLYLNEIANIYNILKLNKikKIIDEVKEYTKEIEENNKNIKDELDKSEKL 1391
|
970
....*....|..
gi 386764405 1511 LAQVKSAIGAQT 1522
Cdd:TIGR01612 1392 IKKIKDDINLEE 1403
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1168-1396 |
7.17e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.56 E-value: 7.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1168 LSDDLQRQKESGQQLVDNLKVELEKERKELAhvnsaiGAQTKLSD--------DLECQKESGQQLVDNLKVELEKERKEL 1239
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELE------EAEAALEEfrqknglvDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1240 AQVKSVIEAqtkLSDDLQREKESAQQLVDNlkVELDKERKELAQvnsafeAQTKLSDDLQRQKESAQQLVdNLKVELDKE 1319
Cdd:COG3206 236 AEAEARLAA---LRAQLGSGPDALPELLQS--PVIQQLRAQLAE------LEAELAELSARYTPNHPDVI-ALRAQIAAL 303
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764405 1320 RKELAQvnsafEAQtKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKsviEAQTKLSdDLQRQKESAQQLVDNL 1396
Cdd:COG3206 304 RAQLQQ-----EAQ-RILASLEAELEALQAREASLQAQLAQLEARLAELP---ELEAELR-RLEREVEVARELYESL 370
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1050-1437 |
7.40e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 7.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1050 RNLSMKLCELKDLKNKLKSSDEKIAQIKE------TYEEQIKALQAK-CDMEAKKNEHLERNQNQSLTQLKEDALENCVL 1122
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAElqeeleELEEELEELEAElEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1123 MSTKLEELQAKLQEGQQL---VDSQKLELDMNRKELALVKSAYEAQTKLS-DDLQRQKESGQQLVDNLKVELEKERKELA 1198
Cdd:COG4717 144 LPERLEELEERLEELRELeeeLEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1199 HVNSAIGAQTKLSDDLECQKESGQQ------------LVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQL 1266
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEArlllliaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1267 VDNLKVELDK---ERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRE 1343
Cdd:COG4717 304 AEELQALPALeelEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1344 KESAQQLVDNLKvELDKERKELAQVKSVIEAQTKLS---------DDLQRQKESAQQLVDNLKVELDKERKELAKVKSVI 1414
Cdd:COG4717 384 EEELRAALEQAE-EYQELKEELEELEEQLEELLGELeellealdeEELEEELEELEEELEELEEELEELREELAELEAEL 462
|
410 420
....*....|....*....|...
gi 386764405 1415 EaQTKLSDDLQRQKESAQQLEAQ 1437
Cdd:COG4717 463 E-QLEEDGELAELLQELEELKAE 484
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1222-1375 |
7.78e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 7.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1222 QQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSA--FEAQTKLSDDLQ 1299
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeYEALQKEIESLK 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1300 RQKESAQQLVDNLKVELDKERKELAQVNSAFEaqtKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQ 1375
Cdd:COG1579 103 RRISDLEDEILELMERIEELEEELAELEAELA---ELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPE 175
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1357-1512 |
1.42e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.77 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1357 ELDKERKELAQVKSVIEAQTKlsdDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQ---Q 1433
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELA---ELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnkE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386764405 1434 LEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELA 1512
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1570-1948 |
1.48e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1570 LKLQKEDAQREVFLVKERLVKekrefevklatLEDIIETLEMRCTQMEEERATA--YEQInklenrcqekdnvkssQLQV 1647
Cdd:COG1196 170 YKERKEEAERKLEATEENLER-----------LEDILGELERQLEPLERQAEKAerYREL----------------KEEL 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1648 ETFKVECLHHQLksemathnslvEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDipKVVELQHRLEAETAE 1727
Cdd:COG1196 223 KELEAELLLLKL-----------RELEAELEELEAELEELEAELEELEAELAELEAELEELRL--ELEELELELEEAQAE 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1728 REEAQNKLAVVTGRLDEITRELDNARlehgAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNS 1807
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELE----ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1808 IQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDckiLQAKYRDAKDEIKRCEKKIKDQRLEMEGKLEKMKNKMR 1887
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE---LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386764405 1888 SLytAEVTRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHA 1948
Cdd:COG1196 443 AL--EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1223-1335 |
1.48e-05 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 49.73 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1223 QLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQvnsafeAQTKLSDDLQRQK 1302
Cdd:TIGR04320 247 TPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELAN------AQAQALQTAQNNL 320
|
90 100 110
....*....|....*....|....*....|...
gi 386764405 1303 ESAQQLVDNLKVELDKERKELAQVNSAFEAQTK 1335
Cdd:TIGR04320 321 ATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1235-1955 |
1.50e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.82 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1235 ERKELAQVKSVIEAQTKLSDDLQREKesaqQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDL---QRQKESAQQLVDN 1311
Cdd:TIGR00606 167 EGKALKQKFDEIFSATRYIKALETLR----QVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQItskEAQLESSREIVKS 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1312 LKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLvDNLKVELDKERKELAQvkSVIEAQTKLSDDLQRQ-KESAQ 1390
Cdd:TIGR00606 243 YENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQM-EKDNSELELKMEKVFQ--GTDEQLNDLYHNHQRTvREKER 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1391 QLVDNLKV--ELDKERKELAKVKsvieaqTKLSDDLQRQKESAQQLEAQTkLSDDLQRQKESAQQLVDNLKVELDKERke 1468
Cdd:TIGR00606 320 ELVDCQREleKLNKERRLLNQEK------TELLVEQGRLQLQADRHQEHI-RARDSLIQSLATRLELDGFERGPFSER-- 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1469 laQVKSVIEAQtklsddLQRQKESAQQLVDNLKMELDKERKELAQVksaigaqtklsDDLECQKESVQQLVDNLKVELEK 1548
Cdd:TIGR00606 391 --QIKNFHTLV------IERQEDEAKTAAQLCADLQSKERLKQEQA-----------DEIRDEKKGLGRTIELKKEILEK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1549 ERKELAKVNSAFEAQTKLSDDLkLQKEDAQRevflvkerlvkeKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQIN 1628
Cdd:TIGR00606 452 KQEELKFVIKELQQLEGSSDRI-LELDQELR------------KAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLR 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1629 KLENRCQEKDNVKSSQLQVETfkveclhhqlksemathnslvedLNRKLAEKVSKLDFVQSRLMTEIAehnqvkDQLAQI 1708
Cdd:TIGR00606 519 KLDQEMEQLNHHTTTRTQMEM-----------------------LTKDKMDKDEQIRKIKSRHSDELT------SLLGYF 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1709 TDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELiefyrnrv 1788
Cdd:TIGR00606 570 PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDL-------- 641
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1789 EALERLLLASNQELEELNSIQSNQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDckiLQAKYRDAKDEIKRCEKKI 1868
Cdd:TIGR00606 642 ERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISD---LQSKLRLAPDKLKSTESEL 718
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1869 KdqrlemegKLEKMKNKMRSLytaevtrmkekqerdAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHA 1948
Cdd:TIGR00606 719 K--------KKEKRRDEMLGL---------------APGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLG 775
|
....*..
gi 386764405 1949 IISTNLR 1955
Cdd:TIGR00606 776 TIMPEEE 782
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
553-770 |
1.96e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 553 RECETILSCCHMKVVDIASKNNDLELDNERLNDKCAELKSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINL 632
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 633 ENMLSQIADKEASAASHAQHLKQCGELLRAKYEVCRNELiaknAAQDELVRMMMVPDGETLNGR----VRQLIDLEMMHD 708
Cdd:TIGR02169 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL----SEIEDPKGEDEEIPEEELSLEdvqaELQRVEEEIRAL 970
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764405 709 EHNKM-----YAQMLKQLNELSAKHDNMTHSHLDFVKRTE-IELETKNAQIMAFDEHNNHFDRFLTRI 770
Cdd:TIGR02169 971 EPVNMlaiqeYEEVLKRLDELKEKRAKLEEERKAILERIEeYEKKKREVFMEAFEAINENFNEIFAEL 1038
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
703-1217 |
2.60e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 703 LEMMHDE---HNKMYAQMLKQL----NELSAKHDNMTHSHLDFVKRTEIELETKNAQIM-------AFDEHNNHFDRFLT 768
Cdd:pfam15921 301 LEIIQEQarnQNSMYMRQLSDLestvSQLRSELREAKRMYEDKIEELEKQLVLANSELTearterdQFSQESGNLDDQLQ 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 769 RIFTLLRSRNcpKSTTMGSATNflesmhieKRFENIEMlieGQLLSADDLKRELDD--------------LRSKNEELAK 834
Cdd:pfam15921 381 KLLADLHKRE--KELSLEKEQN--------KRLWDRDT---GNSITIDHLRRELDDrnmevqrleallkaMKSECQGQME 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 835 QNINGIIKRNKF---ITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIK------D 905
Cdd:pfam15921 448 RQMAAIQGKNESlekVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITklrsrvD 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 906 YHVEAIRFINTIRDRLQqdfNGVNTPQQLGTCMTEFLKMYDQMEVRYEESSSLVEK-------LTESQAKLEMQVAELQV 978
Cdd:pfam15921 528 LKLQELQHLKNEGDHLR---NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRL 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 979 EL-ENKDTNQHSGALIKQLNDTIQNLEKVNAKL----SEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLS 1053
Cdd:pfam15921 605 ELqEFKILKDKKDAKIRELEARVSDLELEKVKLvnagSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFR 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1054 MKLCELK----DLKNKLKSSDEKIAQIKETYE--EQIKALQAKCDMEAKKNEHLERNQN---QSLTQLKEDALENCVLMS 1124
Cdd:pfam15921 685 NKSEEMEtttnKLKMQLKSAQSELEQTRNTLKsmEGSDGHAMKVAMGMQKQITAKRGQIdalQSKIQFLEEAMTNANKEK 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1125 TKLEELQAKLQEGQQLVDSQKLELdmnRKELALVKSayeaqtklsddlqrQKESGQQLVDNLKVELEKERKELAHVNSAI 1204
Cdd:pfam15921 765 HFLKEEKNKLSQELSTVATEKNKM---AGELEVLRS--------------QERRLKEKVANMEVALDKASLQFAECQDII 827
|
570
....*....|...
gi 386764405 1205 GAQTKLSDDLECQ 1217
Cdd:pfam15921 828 QRQEQESVRLKLQ 840
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1432-1940 |
2.98e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1432 QQLEAQTKLsddLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKEL 1511
Cdd:TIGR04523 36 KQLEKKLKT---IKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1512 AQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKE 1591
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1592 KREF---EVKLATLEDIIE---TLEMRCTQMEEERATAYEQINKLENRCQEKDNV-KSSQLQVETFKVEclHHQLKSEMA 1664
Cdd:TIGR04523 193 KNKLlklELLLSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEINEKTTEiSNTQTQLNQLKDE--QNKIKKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1665 THNSLVEDLNRKLAEKVSKLdfvqSRLMTEIAEHNQVKDQlaqitDIPKvvELQHRLEAETAEREEAQNKLAVVTGRLDE 1744
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEKQL----NQLKSEISDLNNQKEQ-----DWNK--ELKSELKNQEKKLEEIQNQISQNNKIISQ 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1745 ITRELDNARlehgaqilrmeetaREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQAEGVRDLGDTYS 1824
Cdd:TIGR04523 340 LNEQISQLK--------------KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1825 AAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRLEME--GKLEKMKNKMRSLYTAEVTRMK---E 1899
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKnlDNTRESLETQLKVLSRSINKIKqnlE 485
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 386764405 1900 KQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEKI 1940
Cdd:TIGR04523 486 QKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKI 526
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1414-1623 |
3.15e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 3.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1414 IEAQTKLSDDLQRQKESAQ-QLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDD----LQR 1488
Cdd:COG3883 18 IQAKQKELSELQAELEAAQaELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraraLYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1489 QKESAQQL---------------VDNLKMELDKERKELAQVKSAIgaqtklsDDLECQKESVQQLVDnlkvELEKERKEL 1553
Cdd:COG3883 98 SGGSVSYLdvllgsesfsdfldrLSALSKIADADADLLEELKADK-------AELEAKKAELEAKLA----ELEALKAEL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 386764405 1554 ----AKVNSAFEAQTKLSDDLKLQKEDAQREvflvKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATA 1623
Cdd:COG3883 167 eaakAELEAQQAEQEALLAQLSAEEAAAEAQ----LAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1107-1375 |
3.21e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.57 E-value: 3.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1107 QSLTQLKEDALENcvlmstkLEELQAKLQEGQQLVDSQKLELdmnrkelalvksayEAQTKLSDDLQRQKESGQQLVDNL 1186
Cdd:COG3096 426 RALCGLPDLTPEN-------AEDYLAAFRAKEQQATEEVLEL--------------EQKLSVADAARRQFEKAYELVCKI 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1187 KVELEKERkelAHVNsaigAQTKLSDDLECQKESGQqlVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQL 1266
Cdd:COG3096 485 AGEVERSQ---AWQT----ARELLRRYRSQQALAQR--LQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEEL 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1267 vDNLKVELDKERKEL-AQVNSAFEAQTklsdDLQRQKESAQQLVDNLKvelDKERKELAqvnsAFEAQTKLSDDLQREKE 1345
Cdd:COG3096 556 -EELLAELEAQLEELeEQAAEAVEQRS----ELRQQLEQLRARIKELA---ARAPAWLA----AQDALERLREQSGEALA 623
|
250 260 270
....*....|....*....|....*....|....*.
gi 386764405 1346 SAQQLVDNLKVELDKERK------ELAQVKSVIEAQ 1375
Cdd:COG3096 624 DSQEVTAAMQQLLEREREatverdELAARKQALESQ 659
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
1316-1512 |
3.92e-05 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 48.85 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1316 LDKERKELAQVNSAFEAQTKLSDDLQREKESAQ-------QLVDNLKVELDKERKElaqvkSVIEAQTKLSDDLQRQKES 1388
Cdd:pfam05262 136 LTKENAGLARRYDQWPGKTQIVIPLKKNILSGNvsdvdtdSISDKKVVEALREDNE-----KGVNFRRDMTDLKERESQE 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1389 AQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESaQQLVDNLKVELDKERKE 1468
Cdd:pfam05262 211 DAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKED-KQVAENQKREIEKAQIE 289
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 386764405 1469 LAQ-VKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELA 1512
Cdd:pfam05262 290 IKKnDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVA 334
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
818-1407 |
3.96e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 818 LKRELDDLRSKNEELAKQNINGIIKRNKFITSLEVNTEKVKQYITDLEEEAfkrkQKVVQLENTLSKEQSNAKEMAQRLD 897
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE----EELAELEEELEELEEELEELEEELE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 898 IAQQEIKdyhvEAIRFINTIRDRLQqdfngvntpqqlgtcmteflkmydqmevryEESSSLVEKLTESQAKLEMQVAELQ 977
Cdd:COG1196 348 EAEEELE----EAEAELAEAEEALL------------------------------EAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 978 VELENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLC 1057
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1058 ELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKcdMEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEG 1137
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADYEGF--LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1138 QQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQ 1217
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1218 KESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDD 1297
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1298 LQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREK----ESAQQLVDNLKVELDK----------ERK 1363
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppdlEELERELERLEREIEAlgpvnllaieEYE 791
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 386764405 1364 ELAQVKSVIEAQtklSDDLQRQKESAQQLVDnlkvELDKERKEL 1407
Cdd:COG1196 792 ELEERYDFLSEQ---REDLEEARETLEEAIE----EIDRETRER 828
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1269-1441 |
4.43e-05 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 48.09 E-value: 4.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1269 NLKVELDKERKELAQVNSAFEAQTKLSDDLqrqKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQ 1348
Cdd:smart00787 116 DKQFQLVKTFARLEAKKMWYEWRMKLLEGL---KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1349 QLVDNLKV----ELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLS-DD 1423
Cdd:smart00787 193 QLEDELEDcdptELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTfKE 272
|
170
....*....|....*...
gi 386764405 1424 LQRQKESAQQLEAQTKLS 1441
Cdd:smart00787 273 IEKLKEQLKLLQSLTGWK 290
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1122-1549 |
4.47e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 48.74 E-value: 4.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1122 LMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTK-LSDDLQRQKESGQQLVDNLKvELEKERKELAHV 1200
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRReLESRVAELKEELRQSREKHE-ELEEKYKELSAS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1201 NSAIGAQtklSDDLECQKESGQQLVdnlkVELEKERKELAQVKSVIEAqtklsdDLQREKESAQQLVDNLKVELDKERKE 1280
Cdd:pfam07888 110 SEELSEE---KDALLAQRAAHEARI----RELEEDIKTLTQRVLERET------ELERMKERAKKAGAQRKEEEAERKQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1281 LAQVNSAFEAQTKLSDDLQRQKES-------AQQLVDNL-------------KVELDKERKELAQVNSAFEAQTKLSDDL 1340
Cdd:pfam07888 177 QAKLQQTEEELRSLSKEFQELRNSlaqrdtqVLQLQDTIttltqklttahrkEAENEALLEELRSLQERLNASERKVEGL 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1341 QREKESAQQLVDNLKVELDKERKELAQVK-SVIEAQTKLSDDLQRQKESAQQLVDNlkVELDKERKElakvksvieaqtK 1419
Cdd:pfam07888 257 GEELSSMAAQRDRTQAELHQARLQAAQLTlQLADASLALREGRARWAQERETLQQS--AEADKDRIE------------K 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1420 LSDDLQRQKESAQQleaqtklsDDLQRQKesaqqlvdnLKVELDKERkelaqvksvieaqtklsddlqrqkesaqqlvDN 1499
Cdd:pfam07888 323 LSAELQRLEERLQE--------ERMEREK---------LEVELGREK-------------------------------DC 354
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 386764405 1500 LKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKE 1549
Cdd:pfam07888 355 NRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETV 404
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
575-1588 |
5.11e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.02 E-value: 5.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 575 DLELDNERLNDKCAELKSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQE-------LRKRNINLENMLSQI-ADKEASA 646
Cdd:pfam01576 205 ELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEetaqknnALKKIRELEAQISELqEDLESER 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 647 ASHAQHLKQCGElLRAKYEVCRNEL---IAKNAAQDELvrmmmvpdgetLNGRVRQLIDLEMMHDEHNKMYAQmlkQLNE 723
Cdd:pfam01576 285 AARNKAEKQRRD-LGEELEALKTELedtLDTTAAQQEL-----------RSKREQEVTELKKALEEETRSHEA---QLQE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 724 LSAKHDNMTHS---HLDFVKRTEIELEtKNAQIMAFDEHNNHFDrfltriftlLRSRNCPKSttmgsatnflESMHIEKR 800
Cdd:pfam01576 350 MRQKHTQALEElteQLEQAKRNKANLE-KAKQALESENAELQAE---------LRTLQQAKQ----------DSEHKRKK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 801 feniemlIEGQLlsaDDLKRELDDLRSKNEELAKQningiikrnkfITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLEN 880
Cdd:pfam01576 410 -------LEGQL---QELQARLSESERQRAELAEK-----------LSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 881 TLSKEQS-NAKEMAQRLDIAQQeIKDYHVEAirfiNTIRDRLQQDFNGV-NTPQQLGTCMTEFLKMYDQMevryEESSSL 958
Cdd:pfam01576 469 QLQDTQElLQEETRQKLNLSTR-LRQLEDER----NSLQEQLEEEEEAKrNVERQLSTLQAQLSDMKKKL----EEDAGT 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 959 VEKLTESQAKLEMQVAELQVELENKDTnqhsgalikqlndTIQNLEKVNAKLS---EDNTVSHTVHSKLNESLLKAQKEL 1035
Cdd:pfam01576 540 LEALEEGKKRLQRELEALTQQLEEKAA-------------AYDKLEKTKNRLQqelDDLLVDLDHQRQLVSNLEKKQKKF 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1036 DlrakiieNLEASERNLSMKLCELKDLKNK-----------LKSSDEKIAQIKETYEEQIKALQAKCDM------EAKKN 1098
Cdd:pfam01576 607 D-------QMLAEEKAISARYAEERDRAEAeareketralsLARALEEALEAKEELERTNKQLRAEMEDlvsskdDVGKN 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1099 EH-LERNQNQSLTQLKEdalencvlMSTKLEELQAKLQEgqqlVDSQKLELDMNRKELalvKSAYEAQTKLSDDL-QRQK 1176
Cdd:pfam01576 680 VHeLERSKRALEQQVEE--------MKTQLEELEDELQA----TEDAKLRLEVNMQAL---KAQFERDLQARDEQgEEKR 744
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1177 ESGQQLVDNLKVELEKERKELAhvnSAIGAQTKLSDDLEcQKESGQQLVDNLKVELEKERKELaqvksviEAQTKlsdDL 1256
Cdd:pfam01576 745 RQLVKQVRELEAELEDERKQRA---QAVAAKKKLELDLK-ELEAQIDAANKGREEAVKQLKKL-------QAQMK---DL 810
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1257 QREKESAQQLVDnlkvELDKERKELAQVNSAFEAQTklsddLQRQKESAQqlVDNLKVELDKERKELA-QVNSAFEAQTK 1335
Cdd:pfam01576 811 QRELEEARASRD----EILAQSKESEKKLKNLEAEL-----LQLQEDLAA--SERARRQAQQERDELAdEIASGASGKSA 879
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1336 LSDDLQREKESAQQlvdnLKVELDKErkelaqvksviEAQTKLSDDLQRQkesAQQLVDNLKVELDKERKELAKVKSvie 1415
Cdd:pfam01576 880 LQDEKRRLEARIAQ----LEEELEEE-----------QSNTELLNDRLRK---STLQVEQLTTELAAERSTSQKSES--- 938
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1416 AQTKLSDDLQRQKESAQQLEAQTKlsddlQRQKESAQQL---VDNLKVELDKERKELAQV-KSVIEAQTKLSDDLqrqke 1491
Cdd:pfam01576 939 ARQQLERQNKELKAKLQEMEGTVK-----SKFKSSIAALeakIAQLEEQLEQESRERQAAnKLVRRTEKKLKEVL----- 1008
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1492 saqqlvdnlkMELDKERKELAQVKSaigaqtklsddlecQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLK 1571
Cdd:pfam01576 1009 ----------LQVEDERRHADQYKD--------------QAEKGNSRMKQLKRQLEEAEEEASRANAARRKLQRELDDAT 1064
|
1050
....*....|....*..
gi 386764405 1572 LQKEDAQREVFLVKERL 1588
Cdd:pfam01576 1065 ESNESMNREVSTLKSKL 1081
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
1248-1498 |
5.82e-05 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 48.83 E-value: 5.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1248 AQTKLSDDLQR--EKESAQQLVDNLKVELDKERKELAQvnsafEAQTKLSDDLQRQKESAQQLV-DNLKVELDkERKELA 1324
Cdd:pfam13779 494 AQERLSEALERgaSDEEIAKLMQELREALDDYMQALAE-----QAQQNPQDLQQPDDPNAQEMTqQDLQRMLD-RIEELA 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1325 QVNSAFEAQTKLSDdlqrekesAQQLVDNLKV------------ELDKERKELAQvksVIEAQTKLSDDLQRQKESA--- 1389
Cdd:pfam13779 568 RSGRRAEAQQMLSQ--------LQQMLENLQAgqpqqqqqqgqsEMQQAMDELGD---LLREQQQLLDETFRQLQQQggq 636
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1390 ------QQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEaqtKLSDDL--QRQKESAQQLVDNLKvE 1461
Cdd:pfam13779 637 qqgqpgQQGQQGQGQQPGQGGQQPGAQMPPQGGAEALGDLAERQQALRRRLE---ELQDELkeLGGKEPGQALGDAGR-A 712
|
250 260 270
....*....|....*....|....*....|....*....
gi 386764405 1462 LDKERKELAQ--VKSVIEAQTKLSDDLQrqkESAQQLVD 1498
Cdd:pfam13779 713 MRDAEEALGQgdLAGAVDAQGRALEALR---KGAQQLAE 748
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
315-1178 |
6.04e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 6.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 315 ESLIAEITDKLHDLRVENSELSEKLNLAGKRLLEYTDRIRFLESRV----DDLTRIVSSRDVMISSLESDKQELDkCLKE 390
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKqilrERLANLERQLEELEAQLEELESKLD-ELAE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 391 ARDDLHNRIEVLNASSDLLDCSLS-PNTTPENLASSV--IDKQLREKEHENAELKEKLLNLNNSQRELCQALSSfLQKHN 467
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEeLEAELEELESRLeeLEEQLETLRSKVAQLELQIASLNNEIERLEARLER-LEDRR 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 468 idhefpvewtsssllstISAIESKFVNTLEKSTQMKKECDVQSVCVEKLLEkckllsvslgcqpkELDGFEATIPEAMES 547
Cdd:TIGR02168 417 -----------------ERLQQEIEELLKKLEEAELKELQAELEELEEELE--------------ELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 548 GFESSRECETILscchmkvvdiasknNDLELDNERLNDKCAELKSIIDRGDQHLADINlQLIEKEKQIKDVGAEIQELrk 627
Cdd:TIGR02168 466 LREELEEAEQAL--------------DAAERELAQLQARLDSLERLQENLEGFSEGVK-ALLKNQSGLSGILGVLSEL-- 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 628 rnINLENMLSqiADKEASAASHAQHLkqcgellrakyeVCRNELIAKNA----AQDELVRMMMVPdGETLNGRVRQLIDL 703
Cdd:TIGR02168 529 --ISVDEGYE--AAIEAALGGRLQAV------------VVENLNAAKKAiaflKQNELGRVTFLP-LDSIKGTEIQGNDR 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 704 EMMHDEhnKMYAQMLKQLNELSAKHDNMTHSHLDFVKRTEiELETKNAQIMAFDEHNnhfdRFLTRIFTLLRSRNcpkST 783
Cdd:TIGR02168 592 EILKNI--EGFLGVAKDLVKFDPKLRKALSYLLGGVLVVD-DLDNALELAKKLRPGY----RIVTLDGDLVRPGG---VI 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 784 TMGSATNFLESMHIEKRFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQningiikrnkfitslevntekvkqyITD 863
Cdd:TIGR02168 662 TGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE-------------------------LEQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 864 LEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfINTIRDRLQQDFngvntpQQLGTCMTEFlk 943
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE----IEELEERLEEAE------EELAEAEAEI-- 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 944 myDQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTnqhsgalikqlndTIQNLEKVNAKLSEDNTVSHTVHSK 1023
Cdd:TIGR02168 785 --EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE-------------RLESLERRIAATERRLEDLEEQIEE 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1024 LNESLLKAQKEldlrakiIENLEASERNLSMklcELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKcDMEAKKNEHLER 1103
Cdd:TIGR02168 850 LSEDIESLAAE-------IEELEELIEELES---ELEALLNERASLEEALALLRSELEELSEELREL-ESKRSELRRELE 918
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764405 1104 NQNQSLTQLKedalencvlmsTKLEELQAKLQEGQ-QLVDSQKLELDM-NRKELALVKSAYEAQTKLsDDLQRQKES 1178
Cdd:TIGR02168 919 ELREKLAQLE-----------LRLEGLEVRIDNLQeRLSEEYSLTLEEaEALENKIEDDEEEARRRL-KRLENKIKE 983
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1442-1960 |
6.21e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 6.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1442 DDLQRQKESAQQLVDNLKVELDKERKELA---QVKSVIEAQTK-LSDDLQRQKESAQQLVDnLKMELDKERKELAQVKSA 1517
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKrteNIEELIKEKEKeLEEVLREINEISSELPE-LREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1518 IGAQTKLSDDLECQKESVQQLVDNLKvELEKERKELAKVNSAFEAQTKLSDDLKlQKEDAQREVFLVKERLVKEKREFEV 1597
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLEEKIR-ELEERIEELKKEIEELEEKVKELKELK-EKAEEYIKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1598 KLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFK-VECLHHQLKSEMATHNslVEDLNRK 1676
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKaKKEELERLKKRLTGLT--PEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1677 L----------AEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDIPKV----VELQHR---LEAETAEREEAQNKLAVVT 1739
Cdd:PRK03918 393 LeelekakeeiEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgreLTEEHRkelLEEYTAELKRIEKELKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1740 GRLDEITRELDNAR--LEHGAQILRMEETAREVGNKNAEL-----------CELIEFYRNRVEALERLLLASNQELEELN 1806
Cdd:PRK03918 473 EKERKLRKELRELEkvLKKESELIKLKELAEQLKELEEKLkkynleelekkAEEYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1807 SIQSNQAEGVRDLGDTYSAAEGRQTE--------SDQDKERYQKLaldcKILQAKY---RDAKDEIKRCEKKIKDQRLEM 1875
Cdd:PRK03918 553 ELKKKLAELEKKLDELEEELAELLKEleelgfesVEELEERLKEL----EPFYNEYlelKDAEKELEREEKELKKLEEEL 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1876 EGKLEKMKNKMRSLytaevtRMKEKQERDAAKSASELEaltaqNAKYEEHTRKLSNQIVRLNEKILEQQKQHAIISTNLR 1955
Cdd:PRK03918 629 DKAFEELAETEKRL------EELRKELEELEKKYSEEE-----YEELREEYLELSRELAGLRAELEELEKRREEIKKTLE 697
|
....*
gi 386764405 1956 HLQMQ 1960
Cdd:PRK03918 698 KLKEE 702
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1065-1265 |
7.32e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.90 E-value: 7.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1065 KLKSSDEKIAQIK---ETYEEQIKALQAKcdMEAKKNEHLERNQNQSLTQLKEDALENcvlmstKLEELQAKLQE----- 1136
Cdd:COG3883 17 QIQAKQKELSELQaelEAAQAELDALQAE--LEELNEEYNELQAELEALQAEIDKLQA------EIAEAEAEIEErreel 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1137 GQQLVDSQKLELDMNRKE--------------LALVKSAYEAQTKLSDDLQRQK---ESGQQLVDNLKVELEKERKEL-- 1197
Cdd:COG3883 89 GERARALYRSGGSVSYLDvllgsesfsdfldrLSALSKIADADADLLEELKADKaelEAKKAELEAKLAELEALKAELea 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1198 --AHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQ 1265
Cdd:COG3883 169 akAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
565-1187 |
1.18e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 565 KVVDIASKNNDLELDNERLNDKCAELKSIIDRGDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINLENMLSQIADKEA 644
Cdd:TIGR04523 153 ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKD 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 645 SAASHAQHLKQcgelLRAKYEVCRNELIAKNAAQDELvrmmmvpdgetlngrVRQLIDLEMMHDEHNKMYAQMLKQLNEL 724
Cdd:TIGR04523 233 NIEKKQQEINE----KTTEISNTQTQLNQLKDEQNKI---------------KKQLSEKQKELEQNNKKIKELEKQLNQL 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 725 SA--------KHDNMTHSHLDFVKRTEIELETKNAQImafDEHNNHFDRFLTRIFTLLRSRNcPKSTTMGSATNFLESMH 796
Cdd:TIGR04523 294 KSeisdlnnqKEQDWNKELKSELKNQEKKLEEIQNQI---SQNNKIISQLNEQISQLKKELT-NSESENSEKQRELEEKQ 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 797 IEkrFENIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNINGIIKrnkfITSLEVNTEKVKQYITDLEEEAFKRKQKVV 876
Cdd:TIGR04523 370 NE--IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ----IKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 877 QLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEairfINTIRDRLQQdfngvnTPQQLGTCMTEFLKMYDQ--------- 947
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQLKVLSRS----INKIKQNLEQ------KQKELKSKEKELKKLNEEkkeleekvk 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 948 -MEVRYEESSSLVEKLTESQAKLEMQVAELQVELENKDTNQHSGALIKQLNDTIQNLEkvnaKLSEDNTVSHTVHSKLNE 1026
Cdd:TIGR04523 514 dLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIE----ELKQTQKSLKKKQEEKQE 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1027 SLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCD-MEAKKNEHLERNQ 1105
Cdd:TIGR04523 590 LIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKeIRNKWPEIIKKIK 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1106 NqsltqLKEDALENCVLMSTKLEELQAKLQEgqqlvdsqKLELDMNRKELALVKSAYEaqtKLSDDLQRQKESGQQLVDN 1185
Cdd:TIGR04523 670 E-----SKTKIDDIIELMKDWLKELSLHYKK--------YITRMIRIKDLPKLEEKYK---EIEKELKKLDEFSKELENI 733
|
..
gi 386764405 1186 LK 1187
Cdd:TIGR04523 734 IK 735
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
1272-1633 |
1.44e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 47.36 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1272 VELDKERKELAQVNSAFEAQTKLSDDLQRQKesaQQLVDNLKVELDKerKELAQVNSAF-EAQTKLSDDLQRE----KES 1346
Cdd:pfam13166 96 EKIAKLKKEIKDHEEKLDAAEANLQKLDKEK---EKLEADFLDECWK--KIKRKKNSALsEALNGFKYEANFKsrllREI 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1347 AQQLVDNLKVELDKERKELaqVKSVI-EAQTKLS---------DDLQRQKESAQQLVdNLKVELDKERKELAK---VKSV 1413
Cdd:pfam13166 171 EKDNFNAGVLLSDEDRKAA--LATVFsDNKPEIApltfnvidfDALEKAEILIQKVI-GKSSAIEELIKNPDLadwVEQG 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1414 IEAQTKLSDDL---QR--QKESAQQLEAQtkLSDDLQRQKESAQQLVDnlKVELDKeRKELAQVKSVIEAQTKLS----- 1483
Cdd:pfam13166 248 LELHKAHLDTCpfcGQplPAERKAALEAH--FDDEFTEFQNRLQKLIE--KVESAI-SSLLAQLPAVSDLASLLSafeld 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1484 -DDLQRQKESAQQLVDNLKMELDKERKELAQVKSaigaqtklsddlecqkesvqqlVDNLKVELEKERKELAKVNSAFEA 1562
Cdd:pfam13166 323 vEDIESEAEVLNSQLDGLRRALEAKRKDPFKSIE----------------------LDSVDAKIESINDLVASINELIAK 380
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 386764405 1563 QTKLSDDLKLQKEDAQREV--FLVKErLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENR 1633
Cdd:pfam13166 381 HNEITDNFEEEKNKAKKKLrlHLVEE-FKSEIDEYKDKYAGLEKAINSLEKEIKNLEAEIKKLREEIKELEAQ 452
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
877-1430 |
1.48e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 877 QLENTLSKEQSNAKEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMyDQMEVRYEESS 956
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDL-ERLKEEIEKSS 652
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 957 SLVEKLTESQAKLEMQVAELQvelenkDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELD 1036
Cdd:TIGR00606 653 KQRAMLAGATAVYSQFITQLT------DENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRD 726
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1037 LrakIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAkcdmeakknehlernqnqslTQLKEDA 1116
Cdd:TIGR00606 727 E---MLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT--------------------IMPEEES 783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1117 LENCVLMSTKLEELQAKLQE-----GQQLVDSQKLELDMN----RKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLK 1187
Cdd:TIGR00606 784 AKVCLTDVTIMERFQMELKDverkiAQQAAKLQGSDLDRTvqqvNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK 863
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1188 VELEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLV 1267
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKV 943
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1268 DNLKVELDKERKELAQVnsafeaQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNsafEAQTKLSDDLQREKESA 1347
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDI------ENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKIN---EDMRLMRQDIDTQKIQE 1014
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1348 QQLVDNLKveLDKERKELAQVKSVIEAQTKLSDDLQ--RQKESAQQLVDNLKVELDKERKELAKVK----SVIEAQTKLS 1421
Cdd:TIGR00606 1015 RWLQDNLT--LRKRENELKEVEEELKQHLKEMGQMQvlQMKQEHQKLEENIDLIKRNHVLALGRQKgyekEIKHFKKELR 1092
|
....*....
gi 386764405 1422 DDLQRQKES 1430
Cdd:TIGR00606 1093 EPQFRDAEE 1101
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1068-1289 |
1.48e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1068 SSDEKIAQIKET---YEEQIKALQAKCD-MEAKKNEHLERNQNQSLTQLKEDALENCVLMSTKLEELQAKLQEGQQLVDS 1143
Cdd:COG3206 165 NLELRREEARKAlefLEEQLPELRKELEeAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1144 QKLELDMNRKELALVKSAYEAQTKLSD----DLQRQKESGQQLVDNLKV-ELEKERKELahvNSAIGAQT-KLSDDLECQ 1217
Cdd:COG3206 245 LRAQLGSGPDALPELLQSPVIQQLRAQlaelEAELAELSARYTPNHPDViALRAQIAAL---RAQLQQEAqRILASLEAE 321
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386764405 1218 KESGQQLVDNLKVELEKERKELAQVKsviEAQTKLSdDLQREKESAQQLVDNLkveldKERKELAQVNSAFE 1289
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELP---ELEAELR-RLEREVEVARELYESL-----LQRLEEARLAEALT 384
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1052-1593 |
1.52e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.20 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1052 LSMKLCELKDLKNKLKSSDEKIAQIKETYEE----------QIKALQAKCDMEAKKNEHLERNQNQSLTQLKedalencv 1121
Cdd:PRK01156 178 LRAEISNIDYLEEKLKSSNLELENIKKQIADdekshsitlkEIERLSIEYNNAMDDYNNLKSALNELSSLED-------- 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1122 lMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKS--AYEAQTKLSD--DLQRQKESGQQLVDNLKVE-------- 1189
Cdd:PRK01156 250 -MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINdpVYKNRNYINDyfKYKNDIENKKQILSNIDAEinkyhaii 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1190 -----LEKERKELAHVNSAIGAQTKLSDDLECQKESGQQLV---DNLKVELEKERKElaqvksvieaQTKLSDDLQREKE 1261
Cdd:PRK01156 329 kklsvLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLksiESLKKKIEEYSKN----------IERMSAFISEILK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1262 SAQQLVDNLKVELDKERKELAQVNSAFeAQTKLSDDLQRQKEsaQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQ 1341
Cdd:PRK01156 399 IQEIDPDAIKKELNEINVKLQDISSKV-SSLNQRIRALRENL--DELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYN 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1342 REKESAQQLVDNLKVE---LDKERKELAQVKSVIEA-QTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQ 1417
Cdd:PRK01156 476 EKKSRLEEKIREIEIEvkdIDEKIVDLKKRKEYLESeEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRY 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1418 TKLS-DDLQRQKESAQQLEAQTKLSD--DLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQ 1494
Cdd:PRK01156 556 KSLKlEDLDSKRTSWLNALAVISLIDieTNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKY 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1495 QLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKveleKERKELAKVNSAFEAQTKLSDDLKLQK 1574
Cdd:PRK01156 636 NEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK----KSRKALDDAKANRARLESTIEILRTRI 711
|
570
....*....|....*....
gi 386764405 1575 EDAQREVFLVKERLVKEKR 1593
Cdd:PRK01156 712 NELSDRINDINETLESMKK 730
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1296-1631 |
1.59e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.82 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1296 DDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQ 1375
Cdd:COG4372 41 DKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEEL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1376 TKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKlsddLQRQKESAQQLV 1455
Cdd:COG4372 121 QKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQA----LDELLKEANRNA 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1456 DNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLEcqKESV 1535
Cdd:COG4372 197 EKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVE--KDTE 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1536 QQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQ 1615
Cdd:COG4372 275 EEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDND 354
|
330
....*....|....*.
gi 386764405 1616 MEEERATAYEQINKLE 1631
Cdd:COG4372 355 VLELLSKGAEAGVADG 370
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1230-1629 |
1.80e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 46.87 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1230 VELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDD--------LQRQ 1301
Cdd:COG5185 86 RKFLKEKKLDTKILQEYVNSLIKLPNYEWSADILISLLYLYKSEIVALKDELIKVEKLDEIADIEASYgevetgiiKDIF 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1302 KESAQQLVDNLKVELDKERKELAQVNSAFEAQ----------------TKLSDDLQREKESAQQLVDNLKVELDKERKEL 1365
Cdd:COG5185 166 GKLTQELNQNLKKLEIFGLTLGLLKGISELKKaepsgtvnsikesetgNLGSESTLLEKAKEIINIEEALKGFQDPESEL 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1366 AQV-------KSVIEAQTKLSDDLQRQKesaQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLeAQT 1438
Cdd:COG5185 246 EDLaqtsdklEKLVEQNTDLRLEKLGEN---AESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQL-AAA 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1439 KLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLvDNLKMELDKERKELAQVKSAI 1518
Cdd:COG5185 322 EAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSSEEL-DSFKDTIESTKESLDEIPQNQ 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1519 GAQTklsddlecqKESVQQLVDNLKV---ELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREV-----FLVKERLVK 1590
Cdd:COG5185 401 RGYA---------QEILATLEDTLKAadrQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREAdeesqSRLEEAYDE 471
|
410 420 430
....*....|....*....|....*....|....*....
gi 386764405 1591 EKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINK 1629
Cdd:COG5185 472 INRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLER 510
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
1293-1470 |
1.86e-04 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 46.38 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1293 KLSDDLQR-QKESAQQLVDNLKVELDKERKELAqvnsAFEAQTKLSDdLQREKESAQQLVDNLKVELDKERKELAQVKSV 1371
Cdd:COG3524 169 QLSERAREdAVRFAEEEVERAEERLRDAREALL----AFRNRNGILD-PEATAEALLQLIATLEGQLAELEAELAALRSY 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1372 ieaqtkLSDDlQRQKESAQQLVDNLKVELDKERKELAKVKSvieaqtklSDDLQRQKESAQQLEAQTKLSddlQRQKESA 1451
Cdd:COG3524 244 ------LSPN-SPQVRQLRRRIAALEKQIAAERARLTGASG--------GDSLASLLAEYERLELEREFA---EKAYTSA 305
|
170
....*....|....*....
gi 386764405 1452 QQLVDNLKVELDKERKELA 1470
Cdd:COG3524 306 LAALEQARIEAARQQRYLA 324
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
946-1353 |
2.38e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 46.39 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 946 DQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELEN--KDTNQHS---GALIKQLNDTIQNLEKVNAKLSEDNTVSHtv 1020
Cdd:pfam06160 96 DDIEEDIKQILEELDELLESEEKNREEVEELKDKYRElrKTLLANRfsyGPAIDELEKQLAEIEEEFSQFEELTESGD-- 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1021 HSKLNESLLKAQKELDlrakiienleasernlsmklcelkDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEH 1100
Cdd:pfam06160 174 YLEAREVLEKLEEETD------------------------ALEELMEDIPPLYEELKTELPDQLEELKEGYREMEEEGYA 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1101 LERNQNQSLTQLKEDALENCV--LMSTKLEELQAKLQEGQQLVDsqklEL-DMNRKELALVKSAYEAQTKLSDDLQRQKE 1177
Cdd:pfam06160 230 LEHLNVDKEIQQLEEQLEENLalLENLELDEAEEALEEIEERID----QLyDLLEKEVDAKKYVEKNLPEIEDYLEHAEE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1178 SGQQLvdNLKVELEKERKELAH--VNSAIGAQTKLS------DDLECQKESGQQLVDNLKVELEKERKELAQVKsviEAQ 1249
Cdd:pfam06160 306 QNKEL--KEELERVQQSYTLNEneLERVRGLEKQLEelekryDEIVERLEEKEVAYSELQEELEEILEQLEEIE---EEQ 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1250 TKLSDDLQ--REKES-AQQLVDNLKVELDKERKELAQVNsafeaQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQV 1326
Cdd:pfam06160 381 EEFKESLQslRKDELeAREKLDEFKLELREIKRLVEKSN-----LPGLPESYLDYFFDVSDEIEDLADELNEVPLNMDEV 455
|
410 420
....*....|....*....|....*..
gi 386764405 1327 NSAFEaqtKLSDDLQREKESAQQLVDN 1353
Cdd:pfam06160 456 NRLLD---EAQDDVDTLYEKTEELIDN 479
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1734-1961 |
2.39e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1734 KLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRN---RVEALERLLLASNQELEELNSIQS 1810
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEleeEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1811 NQAEGVRDLGDTYSAAEGRQTESDQDKERYQKLALDckiLQAKYRDAKDEIKRCEKKIKdqrlEMEGKLEKMKNKMRSLy 1890
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAE---LEEKLEELKEELESLEAELE----ELEAELEELESRLEEL- 377
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386764405 1891 taevtrmKEKQERDAAKSASELEALTAQNakyeehtrklsNQIVRLNEKILEQQKQHAIISTNLRHLQMQP 1961
Cdd:TIGR02168 378 -------EEQLETLRSKVAQLELQIASLN-----------NEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1033-1507 |
2.42e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 46.66 E-value: 2.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1033 KELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQsltQL 1112
Cdd:pfam05557 51 QELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAEL---EL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1113 KEDALENCVLMStKLEELQAKLQEGQQLVDsqklELDMNRKELAlvksAYEAQTK-LSDDLQRQ-------KESGQQL-- 1182
Cdd:pfam05557 128 QSTNSELEELQE-RLDLLKAKASEAEQLRQ----NLEKQQSSLA----EAEQRIKeLEFEIQSQeqdseivKNSKSELar 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1183 VDNLKVELEKERKELAHVNSAIGAQTKLSDDLE------CQKESGQQLVDNLKVELEKERKELAQVKSVIEAQT---KLS 1253
Cdd:pfam05557 199 IPELEKELERLREHNKHLNENIENKLLLKEEVEdlkrklEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGlnlRSP 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1254 DDLQREKESAQQ---------------------LVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNL 1312
Cdd:pfam05557 279 EDLSRRIEQLQQreivlkeenssltssarqlekARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGY 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1313 KVELDKERKELAQVNSafeaqtklSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQL 1392
Cdd:pfam05557 359 RAILESYDKELTMSNY--------SPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQ 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1393 VDNLKVELDKErkELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDN--------LKVELDK 1464
Cdd:pfam05557 431 ESLADPSYSKE--EVDSLRRKLETLELERQRLREQKNELEMELERRCLQGDYDPKKTKVLHLSMNpaaeayqqRKNQLEK 508
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 386764405 1465 ERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKE 1507
Cdd:pfam05557 509 LQAEIERLKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKE 551
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1028-1434 |
2.47e-04 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 46.37 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1028 LLKAQKELDlraKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDM--EAkknehlernq 1105
Cdd:PRK04778 100 FRKAKHEIN---EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSfgPA---------- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1106 nqsltqlkEDALENcvlmstKLEELQAKLQEGQQLVDS----------QKLELDMN--RKELALVKSAY-EAQTKLSDDL 1172
Cdd:PRK04778 167 --------LDELEK------QLENLEEEFSQFVELTESgdyveareilDQLEEELAalEQIMEEIPELLkELQTELPDQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1173 QRQKESGQQLVD--------NLKVELEKERKELAHVNSAIgAQTKLsDDLECQKESGQQLVDNLKVELEKERKelAQvKS 1244
Cdd:PRK04778 233 QELKAGYRELVEegyhldhlDIEKEIQDLKEQIDENLALL-EELDL-DEAEEKNEEIQERIDQLYDILEREVK--AR-KY 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1245 VIEAQTKLSDDLQREKESAQQLVDNLKV----------ELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDnlkv 1314
Cdd:PRK04778 308 VEKNSDTLPDFLEHAKEQNKELKEEIDRvkqsytlnesELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQE---- 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1315 ELDKERKELAQVNsafEAQTKLSDDLQ--REKE-SAQQLVDNLkveldkeRKELAQVKSVIEAQ--TKLSDDLQRQKESA 1389
Cdd:PRK04778 384 ELEEILKQLEEIE---KEQEKLSEMLQglRKDElEAREKLERY-------RNKLHEIKRYLEKSnlPGLPEDYLEMFFEV 453
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 386764405 1390 QQLVDNLKVELDKERKELAKV-KSVIEAQtklsDDLQRQKESAQQL 1434
Cdd:PRK04778 454 SDEIEALAEELEEKPINMEAVnRLLEEAT----EDVETLEEETEEL 495
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1354-1516 |
2.51e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 45.73 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1354 LKVELDKERKELAQVKSVIEAqtkLSDDLQRQKESAQQL---VDNLKVELDKERKELAKVKSVI-EAQTKLSDDLQRQKE 1429
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAE---LADLLSLERQGNQDLqdsVANLRASLSAAEAERSRLQALLaELAGAGAAAEGRAGE 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1430 SAQQLEAQTKLSDDLQRQKESAQQLVDNLkveldkeRKELAQVKSVIEAQTKlsddlqRQKESAQQLVD---NLKMELDK 1506
Cdd:PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAAL-------RRQLAALEAALDASEK------RDRESQAKIADlgrRLNVALAQ 187
|
170
....*....|
gi 386764405 1507 ERKELAQVKS 1516
Cdd:PRK09039 188 RVQELNRYRS 197
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1297-1462 |
2.78e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1297 DLQR---QKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSV-- 1371
Cdd:COG1579 11 DLQEldsELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNke 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1372 IEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKEsaqqlEAQTKLSDDLQRQKESA 1451
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELD-----EELAELEAELEELEAER 165
|
170
....*....|.
gi 386764405 1452 QQLVDNLKVEL 1462
Cdd:COG1579 166 EELAAKIPPEL 176
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1045-1209 |
2.93e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1045 LEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETY---EEQIKALQAKCDMEAKKNEHLERNQNQSLTQLKE------- 1114
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYnelQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraralyr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1115 ------------------DALENCVLMSTKLE---ELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKlsdDLQ 1173
Cdd:COG3883 98 sggsvsyldvllgsesfsDFLDRLSALSKIADadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA---ELE 174
|
170 180 190
....*....|....*....|....*....|....*.
gi 386764405 1174 RQKESGQQLVDNLKVELEKERKELAHVNSAIGAQTK 1209
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1296-1459 |
3.01e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 46.17 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1296 DDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDnlkvELDKERKELAQVKSVIEAq 1375
Cdd:pfam05667 338 EELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLD----LLPDAEENIAKLQALVDA- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1376 tklsddlqrqkeSAQQLVdNLKVELDKERKEL-AKVKSVIEAQTKLSDDLQRQKESAQQLEAQTK-LSDDLQRQKESAQQ 1453
Cdd:pfam05667 413 ------------SAQRLV-ELAGQWEKHRVPLiEEYRALKEAKSNKEDESQRKLEEIKELREKIKeVAEEAKQKEELYKQ 479
|
....*.
gi 386764405 1454 LVDNLK 1459
Cdd:pfam05667 480 LVAEYE 485
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1298-1958 |
3.06e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1298 LQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTK 1377
Cdd:TIGR04523 45 IKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1378 LSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIeaqtklsDDLQRQKESaqqLEAQTKLsddLQRQKESAQQLVDN 1457
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKY-------NDLKKQKEE---LENELNL---LEKEKLNIQKNIDK 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1458 LKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLkmelDKERKELAQVKSAIG-AQTKLSDDLECQKESVQ 1536
Cdd:TIGR04523 192 IKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNI----EKKQQEINEKTTEISnTQTQLNQLKDEQNKIKK 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1537 QLVDNLKvELEKERKELAKVNSAF-EAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEmrctq 1615
Cdd:TIGR04523 268 QLSEKQK-ELEQNNKKIKELEKQLnQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLN----- 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1616 meeeratayEQINKLENRCQEKDNVKSSqlqvetfkveclhhqlksemathnslvedLNRKLAEKVSKLDfvqsrlmTEI 1695
Cdd:TIGR04523 342 ---------EQISQLKKELTNSESENSE-----------------------------KQRELEEKQNEIE-------KLK 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1696 AEHNQVKDQLAQITDipKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARlehgAQILRMEETAREVGNKNA 1775
Cdd:TIGR04523 377 KENQSYKQEIKNLES--QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK----ETIIKNNSEIKDLTNQDS 450
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1776 ELCELIEFYRNRVEALERLLLASNQELeelNSIQSNQaegvrdlgdtysaaEGRQTESDQDKERYQKLALDCKILQAKYR 1855
Cdd:TIGR04523 451 VKELIIKNLDNTRESLETQLKVLSRSI---NKIKQNL--------------EQKQKELKSKEKELKKLNEEKKELEEKVK 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1856 DAKDEIKRCEKKIKD---QRLEMEGKLEKMKNKMRSLYTAEVTRMKEKQERDAAKSASEL----EALTAQNAKYEEHTRK 1928
Cdd:TIGR04523 514 DLTKKISSLKEKIEKlesEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELkqtqKSLKKKQEEKQELIDQ 593
|
650 660 670
....*....|....*....|....*....|
gi 386764405 1929 LSNQIVRLNEKILEQQKQHAIISTNLRHLQ 1958
Cdd:TIGR04523 594 KEKEKKDLIKEIEEKEKKISSLEKELEKAK 623
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
1190-1390 |
3.75e-04 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 45.76 E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1190 LEKERKELAHVNSAIGAQTKLSDDLECQKESGQ-------QLVDNLKVELEKERKElaqvkSVIEAQTKLSDDLQREKES 1262
Cdd:pfam05262 136 LTKENAGLARRYDQWPGKTQIVIPLKKNILSGNvsdvdtdSISDKKVVEALREDNE-----KGVNFRRDMTDLKERESQE 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1263 AQQLVDNLKVELDKERKELA----QVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQvNSAFEAQtKLSD 1338
Cdd:pfam05262 211 DAKRAQQLKEELDKKQIDADkaqqKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAE-NQKREIE-KAQI 288
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 386764405 1339 DLQREKESAQQLVDNLKVELDKERKELAQV--KSVIEAQTKL---SDDLQRQKESAQ 1390
Cdd:pfam05262 289 EIKKNDEEALKAKDHKAFDLKQESKASEKEaeDKELEAQKKRepvAEDLQKTKPQVE 345
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1296-1572 |
3.94e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 44.90 E-value: 3.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1296 DDLQRQKESAQQLVDNLKVELDKERKEL----AQVNSAFEAQTKLSDDLQREKESAQQLVDN---LKVELDKERKELAQV 1368
Cdd:COG1340 11 EELEEKIEELREEIEELKEKRDELNEELkelaEKRDELNAQVKELREEAQELREKRDELNEKvkeLKEERDELNEKLNEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1369 KSVIEAQTKLSDDLQRQKESaqqlVDNLKVELDKERKE-------LAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKL- 1440
Cdd:COG1340 91 REELDELRKELAELNKAGGS----IDKLRKEIERLEWRqqtevlsPEEEKELVEKIKELEKELEKAKKALEKNEKLKELr 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1441 --SDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAI 1518
Cdd:COG1340 167 aeLKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRKEL 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 386764405 1519 GAQTKLSDDLECQKEsvqqlvdnlKVELEKERKELAKvnsAFEAQTKLS-DDLKL 1572
Cdd:COG1340 247 KKLRKKQRALKREKE---------KEELEEKAEEIFE---KLKKGEKLTtEELKL 289
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1399-1555 |
5.11e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1399 ELDKERKELAKVKSVIEAQtkLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEA 1478
Cdd:COG1579 14 ELDSELDRLEHRLKELPAE--LAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEY 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764405 1479 QtklsdDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAK 1555
Cdd:COG1579 92 E-----ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1038-1442 |
5.50e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 45.27 E-value: 5.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1038 RAKIIEN-LEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDmEAKKNEHLERNQNQSLTQLKEDA 1116
Cdd:pfam07888 28 RAELLQNrLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVA-ELKEELRQSREKHEELEEKYKEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1117 LENCVLMSTKLEELQAKLQEGQQLVdsQKLELDMNrkelALVKSAYEAQTKLSDDLQRQKESGQQLVD------NLKVEL 1190
Cdd:pfam07888 107 SASSEELSEEKDALLAQRAAHEARI--RELEEDIK----TLTQRVLERETELERMKERAKKAGAQRKEeeaerkQLQAKL 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1191 EKERKELAHVNSAIgaqTKLSDDLECQKESGQQLVDNL-------------KVELEKERKELAQVKSVIEAQTKLSDDLQ 1257
Cdd:pfam07888 181 QQTEEELRSLSKEF---QELRNSLAQRDTQVLQLQDTIttltqklttahrkEAENEALLEELRSLQERLNASERKVEGLG 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1258 REKESAQQLVDNLKVELDKERKELAQVNSAF-EAQTKLSDDLQRQKESAQQLVDNlkVELDKERKElaqvnsafeaqtKL 1336
Cdd:pfam07888 258 EELSSMAAQRDRTQAELHQARLQAAQLTLQLaDASLALREGRARWAQERETLQQS--AEADKDRIE------------KL 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1337 SDDLQREKESAQQlvdnLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEA 1416
Cdd:pfam07888 324 SAELQRLEERLQE----ERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQ 399
|
410 420
....*....|....*....|....*..
gi 386764405 1417 QT-KLSDDLQRQKESAQQLEAQTKLSD 1442
Cdd:pfam07888 400 RLeTVADAKWSEAALTSTERPDSPLSD 426
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1503-1949 |
5.74e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 5.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1503 ELDKERKEL--------AQVKSAIGAQTKLSDDLECQKESVQQLVDNLKvELEKERKELAKvnsafeAQTKLSDDL-KLQ 1573
Cdd:COG4717 50 RLEKEADELfkpqgrkpELNLKELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEA------ELEELREELeKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1574 KEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVE 1653
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1654 clhhQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEiAEHNQVKDQLAQITDIPKVVELQHRLEAETAEREEAQN 1733
Cdd:COG4717 203 ----ELQQRLAELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1734 KLAVVTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQA 1813
Cdd:COG4717 278 VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1814 EGVRDLgdtysaaegrqTESDQDKERYQKLAldckilQAKYRDAKDEIKRCEKKikDQRLEMEGKLEKMKNKMRSLYTAE 1893
Cdd:COG4717 358 ELEEEL-----------QLEELEQEIAALLA------EAGVEDEEELRAALEQA--EEYQELKEELEELEEQLEELLGEL 418
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1894 VTRMKEKQERDAAKsasELEALTAQNAKYEEHTRKLSNQIVRLNEKILEQQKQHAI 1949
Cdd:COG4717 419 EELLEALDEEELEE---ELEELEEELEELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| dnaK |
PRK00290 |
molecular chaperone DnaK; Provisional |
1331-1443 |
6.07e-04 |
|
molecular chaperone DnaK; Provisional
Pssm-ID: 234715 [Multi-domain] Cd Length: 627 Bit Score: 45.09 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1331 EAQTKLSDD-LQREKESAQQlvdnlKVELDKERKELAQV------------KSVIEAQTKLSDDlqrQKESAQQLVDNLK 1397
Cdd:PRK00290 495 TASSGLSDEeIERMVKDAEA-----NAEEDKKRKELVEArnqadsliyqteKTLKELGDKVPAD---EKEKIEAAIKELK 566
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 386764405 1398 VELDKERKEL--AKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDD 1443
Cdd:PRK00290 567 EALKGEDKEAikAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAKDDD 614
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
315-1136 |
6.55e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 6.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 315 ESLIAEITDKLHDLRVENSELSEKLNL-AGKRLLEYTDRIRFLESRVDDLTRIvssrDVMISSLESDKQELDKCLKEARD 393
Cdd:TIGR02169 190 DLIIDEKRQQLERLRREREKAERYQALlKEKREYEGYELLKEKEALERQKEAI----ERQLASLEEELEKLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 394 DLHNRIEVLNAssdlldcslspnttpenlassvIDKQLREK-EHENAELKEKLLNLNnSQRELCQALSSFLQKHNIDHEf 472
Cdd:TIGR02169 266 RLEEIEQLLEE----------------------LNKKIKDLgEEEQLRVKEKIGELE-AEIASLERSIAEKERELEDAE- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 473 pvewtsssllSTISAIESKFVNTLEKSTQMKKECDVQSVCVEKLLEKCKLLSvslgcqpKELDGFEATIPEAMESGFESS 552
Cdd:TIGR02169 322 ----------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK-------EELEDLRAELEEVDKEFAETR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 553 REcetiLSCCHMKVVDIASKNNDLELDNERLNDKCAELksiidrgDQHLADINLQLIEKEKQIKDVGAEIQELRKRNINL 632
Cdd:TIGR02169 385 DE----LKDYREKLEKLKREINELKRELDRLQEELQRL-------SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 633 ENMLSQIADKEASAASHAQHLKQCGELLRAKYEVCRNELIAKNAAQDEL---------VRMMMVPDGETLNGRVRQLIDL 703
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASeervrggraVEEVLKASIQGVHGTVAQLGSV 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 704 EmmhdehnKMYAQMLK-----QLNELSAKHDNMTHSHLDFVKRteieletKNAQIMAFDEHNNhfdrflTRIFTLLRSRN 778
Cdd:TIGR02169 534 G-------ERYATAIEvaagnRLNNVVVEDDAVAKEAIELLKR-------RKAGRATFLPLNK------MRDERRDLSIL 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 779 CPKStTMGSATNFLEsmhIEKRFENIEMLIEGQLLSADDL---KRELDDLRSKNEElakqniNGIIKRNKFITSLEVNTE 855
Cdd:TIGR02169 594 SEDG-VIGFAVDLVE---FDPKYEPAFKYVFGDTLVVEDIeaaRRLMGKYRMVTLE------GELFEKSGAMTGGSRAPR 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 856 KVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNAKEMAQRLDIAQQEIKDyhveAIRFINTIRDRLQQDFNGVNTPQQLG 935
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD----ASRKIGEIEKEIEQLEQEEEKLKERL 739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 936 TCMTEFLKmydQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELEN-KDTNQHSGalIKQLNDTIQNLEKVNAKLSEdn 1014
Cdd:TIGR02169 740 EELEEDLS---SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlEARLSHSR--IPEIQAELSKLEEEVSRIEA-- 812
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1015 tVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIK---ETYEEQIKALQAKC 1091
Cdd:TIGR02169 813 -RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalRDLESRLGDLKKER 891
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 386764405 1092 DMEAKKNEHLERNQNQSLTQLkEDALENCVLMSTKLEELQAKLQE 1136
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQI-EKKRKRLSELKAKLEALEEELSE 935
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1223-1498 |
6.60e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.51 E-value: 6.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1223 QLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQK 1302
Cdd:COG4372 24 ILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEEL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1303 ESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLS--- 1379
Cdd:COG4372 104 ESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEaeq 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1380 --DDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDN 1457
Cdd:COG4372 184 alDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEEL 263
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 386764405 1458 LKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVD 1498
Cdd:COG4372 264 ELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNL 304
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
1424-1578 |
7.90e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 44.41 E-value: 7.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1424 LQRQKESAQQLEAQTKLSDDLQ----RQKESAQQlvDNLKvELDKER-KELAQVKSVIEAQTKLSDDLQRQKESAQQLVD 1498
Cdd:PRK09510 67 QQQQQKSAKRAEEQRKKKEQQQaeelQQKQAAEQ--ERLK-QLEKERlAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAA 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1499 NLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKlQKEDAQ 1578
Cdd:PRK09510 144 AAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAK-KKAAAE 222
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1059-1518 |
8.41e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 8.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1059 LKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDMEAKKNEHLERNQNQSLtqlkedalencvlmstKLEELQAKLQEgq 1138
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELE----------------ELEEELEELEA-- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1139 qlvdsqkleldmNRKELALVKSAYEAQTKLSDDLQRQKESGQQLvDNLKVELEKERKELAHVNSAIGAQTKLSDDLECQK 1218
Cdd:COG4717 110 ------------ELEELREELEKLEKLLQLLPLYQELEALEAEL-AELPERLEELEERLEELRELEEELEELEAELAELQ 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1219 ESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDD----LQREKESAQQLVDNLKVELDKERKE------------LA 1282
Cdd:COG4717 177 EELEELLEQLSLATEEELQDLAEELEELQQRLAELEEeleeAQEELEELEEELEQLENELEAAALEerlkearlllliAA 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1283 QVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKER 1362
Cdd:COG4717 257 ALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSP 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1363 KELA----QVKSVIEAQTKLSD-----DLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQ-----K 1428
Cdd:COG4717 337 EELLelldRIEELQELLREAEEleeelQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQleellG 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1429 ESAQQLEAQTKlsDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEaQTKLSDDLQRQKESAQQLVDNLKmELDKER 1508
Cdd:COG4717 417 ELEELLEALDE--EELEEELEELEEELEELEEELEELREELAELEAELE-QLEEDGELAELLQELEELKAELR-ELAEEW 492
|
490
....*....|
gi 386764405 1509 KELAQVKSAI 1518
Cdd:COG4717 493 AALKLALELL 502
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
1300-1638 |
8.68e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 44.85 E-value: 8.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1300 RQKESAQQLVDNLKVELDKERKelaQVNSAFEAQTKLSDdlqrekESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLS 1379
Cdd:PLN03229 422 KKREAVKTPVRELEGEVEKLKE---QILKAKESSSKPSE------LALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLR 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1380 DDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQqleaqtklSDDLQRQKESAQQlvdnLK 1459
Cdd:PLN03229 493 EEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSR--------AKALSEKKSKAEK----LK 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1460 VELDKERKELAQVKSVIEAQTKLSDDLQRQKES-AQQLVDNLKMELDKERK----ELAQV-KSA----IGAQTKLSDDLE 1529
Cdd:PLN03229 561 AEINKKFKEVMDRPEIKEKMEALKAEVASSGASsGDELDDDLKEKVEKMKKeielELAGVlKSMglevIGVTKKNKDTAE 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1530 cqkesvQQLVDNLKVELEKERKElakVNSAFEAQTKLSD------DLKLQKEDA-QREVFLVKERLVKEKREFEVKLATL 1602
Cdd:PLN03229 641 ------QTPPPNLQEKIESLNEE---INKKIERVIRSSDlkskieLLKLEVAKAsKTPDVTEKEKIEALEQQIKQKIAEA 711
|
330 340 350
....*....|....*....|....*....|....*.
gi 386764405 1603 EDIIETLEmRCTQMEEERATAYEQINKLENRCQEKD 1638
Cdd:PLN03229 712 LNSSELKE-KFEELEAELAAARETAAESNGSLKNDD 746
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
1027-1632 |
9.10e-04 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 44.82 E-value: 9.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1027 SLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKAL----QAKCD-------MEA 1095
Cdd:PTZ00440 1907 QILKYSDDIDKKQRDCNKLVEDGNEIYLKSTAINELKNMINSVKNKESAISNKIDNVSNKLselnKITCNdesydeiLEK 1986
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1096 KKNEHLERNQNqSLTQLKEDALENCVLMSTK--LEELQAKLQEGQQLVDSQKLElDMNRKELALVKSAYEAQTKLSDDLQ 1173
Cdd:PTZ00440 1987 EEYEELKDLRN-SFNQEKAETLNNLKLNKIKedFNSYKNLLDELEKSVKTLKAS-ENIKKIVENKKTSIDAINTNIEDIE 2064
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1174 RQKESGQQLVDNLkveLEKERK-ELAHVNSAIGA-QTKLSDDLEC---QKESGQQLVDNLKVELEKERKELAQV------ 1242
Cdd:PTZ00440 2065 KEIESINPSLDEL---LKKGHKiEISRYTSIIDNvQTKISNDSKNindIEKKAQIYLAYIKNNYNSIKKDISTLneyfde 2141
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1243 KSV-------IEAQTKLSDDLQREKESAQQLVDNLKVEL--DKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLK 1313
Cdd:PTZ00440 2142 KQVsnyiltnIDKANKLSSELSEAVTNSEEIIENIKKEIieINENTEMNTLENTADKLKELYENLKKKKNIINNIYKKIN 2221
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1314 -VELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKS-----VIEAQTKLSDDLQRQKE 1387
Cdd:PTZ00440 2222 fIKLQEIENSSEKYNDISKLFNNVVETQKKKLLDNKNKINNIKDKINDKEKELINVDSsftleSIKTFNEIYDDIKSNIG 2301
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1388 SAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELD---K 1464
Cdd:PTZ00440 2302 DLYKLEDTNNDELKKVKLYIENITHLLNRINTLINDLDNYQDENYGKDKNIELNNENNSYIIKTKEKINNLKEEFSkllK 2381
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1465 ERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLkmeldKERKELAQVKS---AIGAQTKLSDDLECQKESVQQLVDN 1541
Cdd:PTZ00440 2382 NIKRNNTLCNNNNIKDFISNIGKSVETIKQRFSSNL-----PEKEKLHQIEEnlnEIKNIMNETKRISNVDAFTNKILQD 2456
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1542 LKVELEKER--KELAKVNSAFEAQTKLSDDLK---LQKEDAQREVFLVKERLVKEKREFEVKLATLE-----------DI 1605
Cdd:PTZ00440 2457 IDNEKNKENnnMNAEKIDDLIENVTSHNEKIKselLIINDALRRVKEKKDEMNKLFNSLTENNNNNNnsaknivdnstYI 2536
|
650 660
....*....|....*....|....*..
gi 386764405 1606 IETLEMRCTQMEEERATAYEQINKLEN 1632
Cdd:PTZ00440 2537 INELESHVSKLNELLSYIDNEIKELEN 2563
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
1027-1450 |
9.41e-04 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 44.94 E-value: 9.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1027 SLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIA-QIKETYEEQIKALQAK-CDMEAKKNEHlern 1104
Cdd:pfam15818 8 SLLEALEELRMRREAETQYEEQIGKIIVETQELKWQKETLQNQKETLAkQHKEAMAVFKKQLQMKmCALEEEKGKY---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1105 qnQSLTQLKEDALENCVLMSTKLE----ELQAKLQEGQQLVDSQKLELDMNRKELALVKSAY-----------EAQTKLS 1169
Cdd:pfam15818 84 --QLATEIKEKEIEGLKETLKALQvskySLQKKVSEMEQKLQLHLLAKEDHHKQLNEIEKYYatitgqfglvkENHGKLE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1170 DDLQRQKESGQQL----------VDNLKVELEKERKELahVNSAIGAQTKLSD---DLECQKESGQQLVDNLKVELEKER 1236
Cdd:pfam15818 162 QNVQEAIQLNKRLsalnkkqeseICSLKKELKKVTSDL--IKSKVTCQYKMGEeniNLTIKEQKFQELQERLNMELELNK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1237 KELAQVKSVIEAQTKLSDDLQREKESAQQLVdNLKVELDKERKELAQVNSAFEAQTKLSDD-----------LQRQKESA 1305
Cdd:pfam15818 240 KINEEITHIQEEKQDIIISFQHMQQLLQQQT-QANTEMEAELKALKENNQTLERDNELQREkvkeneekflnLQNEHEKA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1306 QQLVDNLKVELDKERKELA-QVNSAFEAQTKLsddlqreKESAQQLVDNLKVELDKERKELAQVKSV-IEAQTKLSDDLQ 1383
Cdd:pfam15818 319 LGTWKKHVEELNGEINEIKnELSSLKETHIKL-------QEHYNKLCNQKKFEEDKKFQNVPEVNNEnSEMSTEKSENLI 391
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1384 RQKESAQQLVDNLKVE---LDKERKELAKVKSVIEAQTkLSDDLQRQKESAQQlEAQTKLSDDLQRQKES 1450
Cdd:pfam15818 392 IQKYNSEQEIREENTKsfcSDTEYRETEKKKGPPVEEI-IIEDLQVLEKSFKN-EIDTSVPQDKNQSEIS 459
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1254-1518 |
1.03e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1254 DDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAQ 1333
Cdd:COG4372 41 DKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEEL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1334 TKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIE-AQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKS 1412
Cdd:COG4372 121 QKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLEsLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1413 VIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKES 1492
Cdd:COG4372 201 ELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEI 280
|
250 260
....*....|....*....|....*.
gi 386764405 1493 AQQLVDNLKMELDKERKELAQVKSAI 1518
Cdd:COG4372 281 AALELEALEEAALELKLLALLLNLAA 306
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1470-1644 |
1.03e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1470 AQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIgaqtklsDDLECQKESVQQLVDNLKVELEKE 1549
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAEL-------EALQAEIDKLQAEIAEAEAEIEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1550 RKELAK---------------------------------VNSAFEAQTKLSDDLKLQK---EDAQREVFLVKERLVKEKR 1593
Cdd:COG3883 85 REELGEraralyrsggsvsyldvllgsesfsdfldrlsaLSKIADADADLLEELKADKaelEAKKAELEAKLAELEALKA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 386764405 1594 EFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQ 1644
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1360-1937 |
1.07e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1360 KERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLEAQT- 1438
Cdd:TIGR00618 163 KEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSh 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1439 ---KLSDDLQRQKESAQQLVDNLKVELDK---ERKELAQVKSVIEAQTKLSDDLQRQKESAQ--QLVDNLKMELDKERKE 1510
Cdd:TIGR00618 243 aylTQKREAQEEQLKKQQLLKQLRARIEElraQEAVLEETQERINRARKAAPLAAHIKAVTQieQQAQRIHTELQSKMRS 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1511 LAQVKSAIGAQTKLSDDLECQKESVQQLVDNlKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEdaQREVFLVKERLVK 1590
Cdd:TIGR00618 323 RAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQ-EIHIRDAHEVATSIREISCQQHTLTQHIHTLQQ--QKTTLTQKLQSLC 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1591 EKREfevKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQEKDNVKSSQLQVETFKVECLHH------QLKSEMA 1664
Cdd:TIGR00618 400 KELD---ILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQEsaqslkEREQQLQ 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1665 THNSLVEDLNRKLAEKVSKLDFVQS--RLMTEIAEHNQVKDQLAqitDIPKVveLQHRLEAETAEREEAQNKLAVVTGRL 1742
Cdd:TIGR00618 477 TKEQIHLQETRKKAVVLARLLELQEepCPLCGSCIHPNPARQDI---DNPGP--LTRRMQRGEQTYAQLETSEEDVYHQL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1743 DEITRELdnARLEHGAQILRMEETA--------REVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQAE 1814
Cdd:TIGR00618 552 TSERKQR--ASLKEQMQEIQQSFSIltqcdnrsKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1815 gvrdlgdtySAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDQRlemEGKLEKMKNKMRSLytaev 1894
Cdd:TIGR00618 630 ---------VRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR---QLALQKMQSEKEQL----- 692
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 386764405 1895 TRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLN 1937
Cdd:TIGR00618 693 TYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLA 735
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
224-467 |
1.09e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 224 ELLEQRTKELRGIRTQLEVVRYEKALLEEQQMEKDELIKVLNKEKMMAKMELEKLRnVKLTEEHHDNESHHIMPYEFEHM 303
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR-ERLANLERQLEELEAQLEELESK 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 304 KGCLLKEIGLKESLIAEITDKLHDLRVENSELSEKLNLAGKRLLEYTDRIRFLESRVDDLTRIVSSRDVMISSLESDKQE 383
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 384 LDkclkEARDDLHNRIEVLNASSDLLDCSLSPNTTPEnlassvIDKQLREKEHENAELKEKLLNLNNSQRELCQALSSFL 463
Cdd:TIGR02168 412 LE----DRRERLQQEIEELLKKLEEAELKELQAELEE------LEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
....
gi 386764405 464 QKHN 467
Cdd:TIGR02168 482 RELA 485
|
|
| auto_Ata |
NF033481 |
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ... |
1083-1435 |
1.09e-03 |
|
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.
Pssm-ID: 411124 [Multi-domain] Cd Length: 1862 Bit Score: 44.86 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1083 QIKALQAKCDMEAK---KNEHLERNQNQSLTQLKEDaLENCVlMSTKLEELQAKLQEGQQLVDSQKlelDMNRKELALVK 1159
Cdd:NF033481 766 QLKNVDSRVNQNTSnigKNTQNITNLNQKLDDTKTN-LGNQI-TDTNKNLNDAKKDLGNQITDTNT---KLNTTKDQLTT 840
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1160 SAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHvNSAIGAQTKLSDDLE----------CQKESGQQLV---- 1225
Cdd:NF033481 841 QINDTKTELNNTIGNTKTELNTKIDNTKTELENKGLNFAG-NSGADVHRKLGDKLNivggaaastpAAKTSGENVItrtt 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1226 -DNLKVELEKERKelaqVKSVIEAQTKLSDDLQREKESAQQlvdnLKVELDKERKELAQVNSAFEAQTKLS-DDLQRQKE 1303
Cdd:NF033481 920 qDGIQIELLKDSK----FDSVTTGNTTLNTNGLTIKEGPSI----TKQGINAGSKQITNVADGINAKDAVNvDQLTKVKE 991
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1304 SAQQLVDNLKVELDKERKELA-QVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDL 1382
Cdd:NF033481 992 NLNGRITDTNNQLNDAKKDLGnQIADTNKNLNDAKKDLGDQITDTNTKLNNTKDQLTTQINDTKTELNNTIGNTKTELEN 1071
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 386764405 1383 QRQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAQQLE 1435
Cdd:NF033481 1072 KGLNFAGNSGADVHRKLGDKLNIVGGAAASTPAAKTSGENVITRTTKDGIQIE 1124
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
960-1415 |
1.17e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 960 EKLTESQAKLEMQVAELQVELENKDTNQHSGALIKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLnESLLKAQKELDLRA 1039
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERL-EELRELEEELEELE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1040 KIIENLEASERNLSMKLC-----ELKDLKNKLKSSDEKIAQiketYEEQIKALQAKCDmeaKKNEHLERNQNQSLTQLKE 1114
Cdd:COG4717 170 AELAELQEELEELLEQLSlateeELQDLAEELEELQQRLAE----LEEELEEAQEELE---ELEEELEQLENELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1115 DALENCVLMSTKLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVelekER 1194
Cdd:COG4717 243 ERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL----EE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1195 KELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELaqvksvieaqtklsdDLQREKESAQQLVDNLKVEL 1274
Cdd:COG4717 319 EELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL---------------QLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1275 DKERKELAQvnsafeaqtklsddLQRQKESAQQLVDNLKVELDKERKELAQVNSAFEAqtklsDDLQREKESAQQLVDNL 1354
Cdd:COG4717 384 EEELRAALE--------------QAEEYQELKEELEELEEQLEELLGELEELLEALDE-----EELEEELEELEEELEEL 444
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386764405 1355 KVELDKERKELAQVKSVIEaQTKLSDDLQRQKESAQQLVDNLKvELDKERKELAKVKSVIE 1415
Cdd:COG4717 445 EEELEELREELAELEAELE-QLEEDGELAELLQELEELKAELR-ELAEEWAALKLALELLE 503
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
952-1099 |
1.25e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.15 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 952 YEESSSLVEKLTESQAK---LEMQVAELQ------VELENKDTNQHSGAL-----IKQLNDTIQNLEKVNAKLSED---- 1013
Cdd:PRK05771 99 EKEIKELEEEISELENEikeLEQEIERLEpwgnfdLDLSLLLGFKYVSVFvgtvpEDKLEELKLESDVENVEYISTdkgy 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1014 NTVSHTVHSKLNESLLKAQKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQAKCDM 1093
Cdd:PRK05771 179 VYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEI 258
|
....*.
gi 386764405 1094 EAKKNE 1099
Cdd:PRK05771 259 ELERAE 264
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
946-1636 |
1.33e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 946 DQMEVRYEESSSLVEKLTESQAKLEMQVAELQVELEnkdtnqhsgALIKQLNDTIQNLEkvnaklsEDNTVSHTVHSKLN 1025
Cdd:COG3096 357 EELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVD---------SLKSQLADYQQALD-------VQQTRAIQYQQAVQ 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1026 eSLLKAQKELDLRAKIIENLEASERNLSMKLCE----LKDLKNKLKSSDEKIAQiketYEeqiKALQAKCDMEAkkneHL 1101
Cdd:COG3096 421 -ALEKARALCGLPDLTPENAEDYLAAFRAKEQQateeVLELEQKLSVADAARRQ----FE---KAYELVCKIAG----EV 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1102 ERNQ-NQSLTQLKEDALENCVLmSTKLEELQAKLQEGQQLVDSQK--------------LELDmNRKELALVKSAYEAQ- 1165
Cdd:COG3096 489 ERSQaWQTARELLRRYRSQQAL-AQRLQQLRAQLAELEQRLRQQQnaerlleefcqrigQQLD-AAEELEELLAELEAQl 566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1166 ----TKLSDDLQRQKESGQQLVdnlkvELEKERKELAHVNSA-IGAQ---TKLSDDLECQKESGQQLVDNLKVELEKERK 1237
Cdd:COG3096 567 eeleEQAAEAVEQRSELRQQLE-----QLRARIKELAARAPAwLAAQdalERLREQSGEALADSQEVTAAMQQLLERERE 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1238 ------ELAQVKSVIEAQT-KLSDDLQREKESAQQLVDNLKVELDKERKELAQVNSA--FEA------QTKLSDDLQRQK 1302
Cdd:COG3096 642 atverdELAARKQALESQIeRLSQPGGAEDPRLLALAERLGGVLLSEIYDDVTLEDApyFSAlygparHAIVVPDLSAVK 721
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1303 ESAQQLVDNLKVELDKERKELAQVNSAFEAQ-------TKLSD---------------DLQREKESAqqlvdnlkvELDK 1360
Cdd:COG3096 722 EQLAGLEDCPEDLYLIEGDPDSFDDSVFDAEeledavvVKLSDrqwrysrfpevplfgRAAREKRLE---------ELRA 792
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1361 ERKELAqvksviEAQTKLSDD---LQRQKESAQQLV-DNLKVELD----KERKELAKVKSVIEAQ-TKLSDDLQRQKESA 1431
Cdd:COG3096 793 ERDELA------EQYAKASFDvqkLQRLHQAFSQFVgGHLAVAFApdpeAELAALRQRRSELERElAQHRAQEQQLRQQL 866
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1432 QQLEAQTKLSDDLQRQ-----KESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQlVDNLKMELDK 1506
Cdd:COG3096 867 DQLKEQLQLLNKLLPQanllaDETLADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAVLQSDPEQ-FEQLQADYLQ 945
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1507 ERKELAQVKSAIGAQTKLS--------DDLECQKESVQQLVDNLKVELEKERKELAKVNSAFE-AQTKLSDDLK-LQKED 1576
Cdd:COG3096 946 AKEQQRRLKQQIFALSEVVqrrphfsyEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRqAQAQYSQYNQvLASLK 1025
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1577 AQREvflVKERLVKE-KREFE---VKLAT------------LEDIIETLEMRCTQMEEERATAYEQINKLENRCQE 1636
Cdd:COG3096 1026 SSRD---AKQQTLQElEQELEelgVQADAeaeerarirrdeLHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRK 1098
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1223-1400 |
1.37e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1223 QLVDNLKVELEKERKEL-AQVKsvieaqtklsdDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQ 1301
Cdd:COG1579 13 QELDSELDRLEHRLKELpAELA-----------ELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1302 KESA--QQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQtkls 1379
Cdd:COG1579 82 LGNVrnNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAE---- 157
|
170 180
....*....|....*....|.
gi 386764405 1380 ddLQRQKESAQQLVDNLKVEL 1400
Cdd:COG1579 158 --LEELEAEREELAAKIPPEL 176
|
|
| PLN03188 |
PLN03188 |
kinesin-12 family protein; Provisional |
1340-1654 |
1.45e-03 |
|
kinesin-12 family protein; Provisional
Pssm-ID: 215621 [Multi-domain] Cd Length: 1320 Bit Score: 44.16 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1340 LQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTK--LSDDLQRQKESAQQLVDN-----------LKVELDKERKE 1406
Cdd:PLN03188 951 LLKEKYENHPEVLRTKIELKRVQDELEHYRNFYDMGERevLLEEIQDLRSQLQYYIDSslpsarkrnslLKLTYSCEPSQ 1030
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1407 LAKVKSVIEAQTKlSDDLQRQKESAQQLEAQTK---LSDDLQRQKESAQQLVDNLKVELDKERKELAQVKsviEAQTKLS 1483
Cdd:PLN03188 1031 APPLNTIPESTDE-SPEKKLEQERLRWTEAESKwisLAEELRTELDASRALAEKQKHELDTEKRCAEELK---EAMQMAM 1106
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1484 DDLQRQKESAQQLVDNLKMELDKERK---ELAQVKSAI------GAQTKLSDDLECQkesvqqlVDNLKVELEKERKELA 1554
Cdd:PLN03188 1107 EGHARMLEQYADLEEKHIQLLARHRRiqeGIDDVKKAAaragvrGAESKFINALAAE-------ISALKVEREKERRYLR 1179
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1555 KVNSAFEAQTKlsddlklqkeDAQREVFLVKERLVKEKREfevklatlEDIIETLEMRCTQMEEERATAYEQINKLENRC 1634
Cdd:PLN03188 1180 DENKSLQAQLR----------DTAEAVQAAGELLVRLKEA--------EEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241
|
330 340
....*....|....*....|....*
gi 386764405 1635 QEKDN-----VKSSQLQVETFKVEC 1654
Cdd:PLN03188 1242 ENEIStlnqlVAESRLPKEAIRPAC 1266
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1126-1282 |
1.60e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1126 KLEELQAKLQEGQQLVDSQKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERKELAHVNSA-- 1203
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNke 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386764405 1204 IGAQTKLSDDLECQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELA 1282
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
1318-1606 |
1.87e-03 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 43.13 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1318 KERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERK----------ELAQVKS-VIEAQTKLSDdLQRQK 1386
Cdd:pfam15742 59 KIKAELKQAQQKLLDSTKMCSSLTAEWKHCQQKIRELELEVLKQAQsiksqnslqeKLAQEKSrVADAEEKILE-LQQKL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1387 ESAQQLVDNLKVELDKERKElakvksviEAQTKLSDDLQRQKESAQQLEAQTKLSD----DLQRQKESAQQLVDNLK--- 1459
Cdd:pfam15742 138 EHAHKVCLTDTCILEKKQLE--------ERIKEASENEAKLKQQYQEEQQKRKLLDqnvnELQQQVRSLQDKEAQLEmtn 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1460 VELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQT-KLSDDLECQKESVQQL 1538
Cdd:pfam15742 210 SQQQLRIQQQEAQLKQLENEKRKSDEHLKSNQELSEKLSSLQQEKEALQEELQQVLKQLDVHVrKYNEKHHHHKAKLRRA 289
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764405 1539 VDNLKVELEKERKELAKVNSAFEAQTKLSDdlklQKEDAQREVFLVKERLVKEKREFEVKLATLEDII 1606
Cdd:pfam15742 290 KDRLVHEVEQRDERIKQLENEIGILQQQSE----KEKAFQKQVTAQNEILLLEKRKLLEQLTEQEELI 353
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
1383-1570 |
2.06e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 43.26 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1383 QRQKESAQQlVDNLKVELDKERKELAKvksvIEAQTklsddLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVEL 1462
Cdd:PRK09510 80 QRKKKEQQQ-AEELQQKQAAEQERLKQ----LEKER-----LAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKA 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1463 DKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQ-----KESVQQ 1537
Cdd:PRK09510 150 EAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKaaaeaKAAAAK 229
|
170 180 190
....*....|....*....|....*....|...
gi 386764405 1538 LVDNLKVELEKERKELAKVNSAFEAQTKLSDDL 1570
Cdd:PRK09510 230 AAAEAKAAAEKAAAAKAAEKAAAAKAAAEVDDL 262
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
1249-1510 |
2.09e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 43.32 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1249 QTKLSDDLQREKESAQQLVD-NLKVELDKERKELAQvNSAFEAQTKLSDDLQRQKESAQQLVDNlKVELDKERKELAQVN 1327
Cdd:pfam02029 76 QKRLQEALERQKEFDPTIADeKESVAERKENNEEEE-NSSWEKEEKRDSRLGRYKEEETEIREK-EYQENKWSTEVRQAE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1328 SafeaqtKLSDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKEL 1407
Cdd:pfam02029 154 E------EGEEEEDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQ 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1408 AKVKSVIEaqtklsddlqRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQ 1487
Cdd:pfam02029 228 GGLSQSQE----------REEEAEVFLEAEQKLEELRRRRQEKESEEFEKLRQKQQEAELELEELKKKREERRKLLEEEE 297
|
250 260
....*....|....*....|...
gi 386764405 1488 RQKESAQQLVDNLKMELDKERKE 1510
Cdd:pfam02029 298 QRRKQEEAERKLREEEEKRRMKE 320
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1262-1377 |
2.16e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 42.79 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1262 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQvnsafeAQTKLSDDLQ 1341
Cdd:TIGR04320 244 FDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELAN------AQAQALQTAQ 317
|
90 100 110
....*....|....*....|....*....|....*.
gi 386764405 1342 REKESAQQLVDNLKVELDKERKELAQVKSVIEAQTK 1377
Cdd:TIGR04320 318 NNLATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
1337-1488 |
2.23e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 42.73 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1337 SDDLQREKESAQQLVDNLKVELDKERKELAQVKSVIEAQtklsddlqRQKESAQQLVDNLKVELDKeRKELAKVKSViea 1416
Cdd:COG1566 78 PTDLQAALAQAEAQLAAAEAQLARLEAELGAEAEIAAAE--------AQLAAAQAQLDLAQRELER-YQALYKKGAV--- 145
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386764405 1417 qtklsddlqrqkeSAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELDKE---RKELAQVKSVIEAQTKLSDDLQR 1488
Cdd:COG1566 146 -------------SQQELDEARAALDAAQAQLEAAQAQLAQAQAGLREEeelAAAQAQVAQAEAALAQAELNLAR 207
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
803-1132 |
2.36e-03 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 43.22 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 803 NIEMLIEGQLLSADDLKRELDDLRSKNEELAKQNINgiikRNKFITSLEV--NTEKVKQYITDLEEEAFKRKQKVVQLEN 880
Cdd:pfam18971 560 NLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALN----FNKAVAEAKStgNYDEVKKAQKDLEKSLRKREHLEKEVEK 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 881 TLSKEQSNAKEMAQRLDIAQQeiKDyhvEAIRFINTIRDR------LQQDFNGV-----NTPQQLGTCMTEFLKMYDQME 949
Cdd:pfam18971 636 KLESKSGNKNKMEAKAQANSQ--KD---EIFALINKEANRdaraiaYTQNLKGIkrelsDKLEKISKDLKDFSKSFDEFK 710
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 950 VRYEESSSLVEkltESQAKLEMQVAELQVELEnkdtnqhsgalikqlndTIQNLEKVNAKLSEDNTVSHTVHSKLNES-- 1027
Cdd:pfam18971 711 NGKNKDFSKAE---ETLKALKGSVKDLGINPE-----------------WISKVENLNAALNEFKNGKNKDFSKVTQAks 770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1028 -LLKAQKELDLRAKIIENLEaserNLSMKLCELKDLKNkLKSSDEKIAQIKETYEEQIKalqakcdMEAKKNEHLERNQN 1106
Cdd:pfam18971 771 dLENSVKDVIINQKVTDKVD----NLNQAVSVAKAMGD-FSRVEQVLADLKNFSKEQLA-------QQAQKNEDFNTGKN 838
|
330 340
....*....|....*....|....*.
gi 386764405 1107 QSLTQLKEDALeNCVLMSTKLEELQA 1132
Cdd:pfam18971 839 SELYQSVKNSV-NKTLVGNGLSGIEA 863
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
810-1047 |
2.37e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 810 GQLLSADDLKRELDDLRSKNEELAKQningiikrnkfITSLEVNTEKVKQYITDLEEEAFKRKQKVVQLENTLSKEQSNA 889
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKE-----------LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 890 KEMAQRLDIAQQEIKDYHVEAIRFINTIRDRLQQDFNGVNTPQQLgtcMTEFLKMYDQMEVRYEESSSLVEKLTESQAKL 969
Cdd:COG4942 86 AELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPED---FLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386764405 970 EMQVAELQVELenkdtnqhsgaliKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNESLLKAQKELDLRAKIIENLEA 1047
Cdd:COG4942 163 AALRAELEAER-------------AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1304-1419 |
2.40e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 42.79 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1304 SAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQVksvieaQTKLSDDLQ 1383
Cdd:TIGR04320 244 FDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANA------QAQALQTAQ 317
|
90 100 110
....*....|....*....|....*....|....*.
gi 386764405 1384 RQKESAQQLVDNLKVELDKERKELAKVKSVIEAQTK 1419
Cdd:TIGR04320 318 NNLATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1450-1565 |
2.49e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 42.79 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1450 SAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKMELDKERKELAQvksaigAQTKLSDDLE 1529
Cdd:TIGR04320 244 FDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELAN------AQAQALQTAQ 317
|
90 100 110
....*....|....*....|....*....|....*.
gi 386764405 1530 CQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTK 1565
Cdd:TIGR04320 318 NNLATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
1253-1367 |
2.50e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 42.73 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1253 SDDLQREKESAQQLVDNLKVELDKERKEL----------AQVNSAFEAQTKLSDDLQRQKE-------SAQQLvDNLKVE 1315
Cdd:COG1566 78 PTDLQAALAQAEAQLAAAEAQLARLEAELgaeaeiaaaeAQLAAAQAQLDLAQRELERYQAlykkgavSQQEL-DEARAA 156
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 386764405 1316 LDKERKELAQVNSAFeAQTKLSDDLQREKESAQQLVDNLKVELDKERKELAQ 1367
Cdd:COG1566 157 LDAAQAQLEAAQAQL-AQAQAGLREEEELAAAQAQVAQAEAALAQAELNLAR 207
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1178-1799 |
2.79e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1178 SGQQLVDNLKVELEKERK----ELAHVNSAIGAQTKLSDDLEcQKESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLS 1253
Cdd:PRK01156 135 VGQGEMDSLISGDPAQRKkildEILEINSLERNYDKLKDVID-MLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSH 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1254 DDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQR-QKESAQQLVDNLKVELDKERKELAQVNSAFEA 1332
Cdd:PRK01156 214 SITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTaESDLSMELEKNNYYKELEERHMKIINDPVYKN 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1333 QTKLSD--DLQREKESAQQLVDNLKVELDKERkelAQVKSVIEAQTKLSDDLQRQKEsaqqlVDNLKVELDKERKELAKV 1410
Cdd:PRK01156 294 RNYINDyfKYKNDIENKKQILSNIDAEINKYH---AIIKKLSVLQKDYNDYIKKKSR-----YDDLNNQILELEGYEMDY 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1411 KSVIEAQTKLsdDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVdnlkveldkerKELAQVKSVIeaqtklsDDLQRQK 1490
Cdd:PRK01156 366 NSYLKSIESL--KKKIEEYSKNIERMSAFISEILKIQEIDPDAIK-----------KELNEINVKL-------QDISSKV 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1491 ESAQQLVDNLKMELDKERKELA----QVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKL 1566
Cdd:PRK01156 426 SSLNQRIRALRENLDELSRNMEmlngQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKR 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1567 SDdlKLQKEDAQRevFLVKERLVKEKR----EFEVKLATL-------EDIIEtlEMRCTQMEEERATAYEQINKLENRC- 1634
Cdd:PRK01156 506 KE--YLESEEINK--SINEYNKIESARadleDIKIKINELkdkhdkyEEIKN--RYKSLKLEDLDSKRTSWLNALAVISl 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1635 ------QEKDNVKSSQLQvetfKVECLHHQLKSEMATHNSLVEDLNRKLAEKVSKLD------FVQSRLMTEIAEhnQVK 1702
Cdd:PRK01156 580 idietnRSRSNEIKKQLN----DLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNnkyneiQENKILIEKLRG--KID 653
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1703 DQLAQITDIPkvvELQHRLEAETAEREEAQNKLAVVTGRLDEItrELDNARLEHGAQILRmeetarevgNKNAELCELIE 1782
Cdd:PRK01156 654 NYKKQIAEID---SIIPDLKEITSRINDIEDNLKKSRKALDDA--KANRARLESTIEILR---------TRINELSDRIN 719
|
650
....*....|....*..
gi 386764405 1783 FYRNRVEALERLLLASN 1799
Cdd:PRK01156 720 DINETLESMKKIKKAIG 736
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1247-1495 |
2.86e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.35 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1247 EAQTKLSDDLQR---EKESAQQLVDNLKVEL---DKERKELAQVNSAFE----AQTKLSDDLQRQKESAQQLVDNLKVEL 1316
Cdd:PLN02939 149 QARLQALEDLEKiltEKEALQGKINILEMRLsetDARIKLAAQEKIHVEileeQLEKLRNELLIRGATEGLCVHSLSKEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1317 DKERKElaqvnsafeaQTKLSDDLQ--REKESAQQLVDNLKVELDKERKEL-AQVKSV----IEAQTKLSDDLQRQKESA 1389
Cdd:PLN02939 229 DVLKEE----------NMLLKDDIQflKAELIEVAETEERVFKLEKERSLLdASLRELeskfIVAQEDVSKLSPLQYDCW 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1390 QQLVDNLKVELDKERKELAKVKSVIEAQTKLSDDLQRQKESAqqleAQTKLSDDLQRQKESAQQLVDNLKVELDKERKEL 1469
Cdd:PLN02939 299 WEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASL----KEANVSKFSSYKVELLQQKLKLLEERLQASDHEI 374
|
250 260
....*....|....*....|....*..
gi 386764405 1470 -AQVKSVIEAQTKLSDDLQRQKESAQQ 1495
Cdd:PLN02939 375 hSYIQLYQESIKEFQDTLSKLKEESKK 401
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
1425-1580 |
2.88e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.49 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1425 QRQKESAQQL-EAQTKLSDDLQRQKESAQQLV---DNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNL 1500
Cdd:PRK09510 80 QRKKKEQQQAeELQQKQAAEQERLKQLEKERLaaqEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAA 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1501 --KMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQ 1578
Cdd:PRK09510 160 akKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAE 239
|
..
gi 386764405 1579 RE 1580
Cdd:PRK09510 240 KA 241
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1390-1523 |
3.05e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.89 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1390 QQLVDNLKVELDKErKElaKVKSVIEAQTKLSDDLQRQKESAQQLEAQT-KLSDDLQRQKESAQQLVDNLKVELDKE-RK 1467
Cdd:PRK00409 501 ENIIEEAKKLIGED-KE--KLNELIASLEELERELEQKAEEAEALLKEAeKLKEELEEKKEKLQEEEDKLLEEAEKEaQQ 577
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 386764405 1468 ELAQVKSVIEAQTKLSDDLQRQKES---AQQLVDNLKmELDKERKELAQVKSAIGAQTK 1523
Cdd:PRK00409 578 AIKEAKKEADEIIKELRQLQKGGYAsvkAHELIEARK-RLNKANEKKEKKKKKQKEKQE 635
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1346-1463 |
3.46e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 42.41 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1346 SAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKSVIE--AQTKLsDD 1423
Cdd:TIGR04320 244 FDKTPIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQALqtAQNNL-AT 322
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 386764405 1424 LQRQKESAQQLEAQTklsddlQRQKESAQQLVDNLKVELD 1463
Cdd:TIGR04320 323 AQAALANAEARLAKA------KEALANLNADLAKKQAALD 356
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1485-1636 |
3.54e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1485 DLQR---QKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSA-- 1559
Cdd:COG1579 11 DLQEldsELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNke 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386764405 1560 FEAQTKLSDDLKLQKEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLENRCQE 1636
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1531-1685 |
4.64e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 4.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1531 QKESVQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLKLQKEDAQREVFLVKERLVK-EKREFEVK----LATLEDI 1605
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKyEEQLGNVRnnkeYEALQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1606 IETLEMRCTQMEEERATAYEQINKLENRCQE-KDNVKSSQLQVETFKVEclhhqLKSEMATHNSLVEDLNRKLAEKVSKL 1684
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIEELEEELAElEAELAELEAELEEKKAE-----LDEELAELEAELEELEAEREELAAKI 172
|
.
gi 386764405 1685 D 1685
Cdd:COG1579 173 P 173
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1658-1872 |
5.07e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1658 QLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRLMTEIAEHNQVKDQLAQITDipKVVELQHRLEAETAEREEAQNKLAV 1737
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA--ELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1738 VTGRLDEITRELDNARLEHGAQILRMEETAREVGNKNAELCELIEFYRNRVEALERLLLASNQELEELNSIQSNQAEGVR 1817
Cdd:COG4942 109 LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 386764405 1818 DLGDTYSAAEGRQTESDQDKERYQKLAldcKILQAKYRDAKDEIKRCEKKIKDQR 1872
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAEL---AELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1331-1460 |
5.96e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 5.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1331 EAQTKLSDDlqreKESAQQLVDNL---KVELDKERKELAQVKsviEAQTKLSDDLQRQKESAQQLVDNLKVELDKE-RKE 1406
Cdd:PRK00409 506 EAKKLIGED----KEKLNELIASLeelERELEQKAEEAEALL---KEAEKLKEELEEKKEKLQEEEDKLLEEAEKEaQQA 578
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 386764405 1407 LAKVKSVIEAQTKLSDDLQRQKESAQQL----EAQTKLSDDLQRQKESAQ---QLVDNLKV 1460
Cdd:PRK00409 579 IKEAKKEADEIIKELRQLQKGGYASVKAheliEARKRLNKANEKKEKKKKkqkEKQEELKV 639
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1735-1946 |
6.41e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1735 LAVVTGRLDEITRELDNARLehgaqilRMEETAREvgNKNAELCELIEFYRNRVEALERLLLASNQELEELNSiQSNQAE 1814
Cdd:COG3206 177 LEFLEEQLPELRKELEEAEA-------ALEEFRQK--NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEA-RLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1815 GVRDLGDTYSAAEGRQTESDQDKERYQKLALDCKILQAKYRDAKDEIKRCEKKIKDqrlemegklekmknkMRSLYTAEV 1894
Cdd:COG3206 247 AQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA---------------LRAQLQQEA 311
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 386764405 1895 TRMKEKQERDAAKSASELEALTAQNAKYEEHTRKLSNQIVRLNEkiLEQQKQ 1946
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRR--LEREVE 361
|
|
| TACC_C |
pfam05010 |
Transforming acidic coiled-coil-containing protein (TACC), C-terminal; This entry represents a ... |
1339-1528 |
6.89e-03 |
|
Transforming acidic coiled-coil-containing protein (TACC), C-terminal; This entry represents a C-terminal domain found in the the proteins TACC 1, 2 and 3 (TACC1-3). TACC1 is found concentrated in the centrosomes of eukaryotes which may play a conserved role in organizing centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1). TACC 3 from Xenopus laevis, also known as maskin, associates XMAP215 and promotes efficient microtubule elongation during mitosis. Maskin is also found to bind CPEB and elF-4E. Interestingly, the functional homolog (Alp7) in Schizosaccharomyces pombe (not included in this entry) has been shown to be required for organization of bipolar spindles.
Pssm-ID: 461517 [Multi-domain] Cd Length: 201 Bit Score: 40.43 E-value: 6.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1339 DLQREKESAQQLVDNLKVELDKERKELAQVKSVIE----AQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAKVKsvi 1414
Cdd:pfam05010 12 KARNEIEEKELEINELKAKYEELRRENLEMRKIVAefekTIAQMIEEKQKQKELEHAEIQKVLEEKDQALADLNSVE--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1415 eaqTKLSDDLQRQKESAQQLEAqtkLSDDLQRQKESAQQLVDNLKVE--------------LDKERKELAQVKSVIEAQT 1480
Cdd:pfam05010 89 ---KSFSDLFKRYEKQKEVISG---YKKNEESLKKCAQDYLARIKKEeqryqalkahaeekLDQANEEIAQVRSKAKAET 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 386764405 1481 KlsdDLQRQKESAQQLVDNLKMELDKERKELAQVksaigaqTKLSDDL 1528
Cdd:pfam05010 163 A---ALQASLRKEQMKVQSLERQLEQKTKENEEL-------TKICDEL 200
|
|
| DUF3450 |
pfam11932 |
Protein of unknown function (DUF3450); This family of proteins are functionally ... |
1422-1500 |
7.38e-03 |
|
Protein of unknown function (DUF3450); This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length.
Pssm-ID: 432198 [Multi-domain] Cd Length: 238 Bit Score: 40.68 E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1422 DDLQRQKESAQQLEAQT-KLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNL 1500
Cdd:pfam11932 16 DQALDLAEKAVAAAAQSqKKIDKWDDEKQELLAEYRALKAELESLEVYNRQLERLVASQEQEIASLERQIEEIERTEREL 95
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1495-1766 |
7.46e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 7.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1495 QLVDNLKMELDKERKELAQVKSAIGAQT-KLSDDLECQKESVQQLVDNLKVELEKERKELAkvnSAFEAQTKLSDDLKlQ 1573
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQEAANRQReKEKERYKRDREQWERQRRELESRVAELKEELR---QSREKHEELEEKYK-E 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1574 KEDAQREVFLVKERLVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYEQINKLEN-RCQEKDNVKSSQLQVETFKV 1652
Cdd:pfam07888 106 LSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAqRKEEEAERKQLQAKLQQTEE 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1653 ECLH-----HQLKSEMATHNSLVEDLNRKLAEKVSKLDFVQSRlmteIAEHNQVKDQLAQitdipkvveLQHRLEAETAE 1727
Cdd:pfam07888 186 ELRSlskefQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRK----EAENEALLEELRS---------LQERLNASERK 252
|
250 260 270
....*....|....*....|....*....|....*....
gi 386764405 1728 REEAQNKLAVVTGRLDEITRELDNARLEHGAQILRMEET 1766
Cdd:pfam07888 253 VEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADA 291
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1408-1705 |
7.48e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1408 AKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQlvdnLKVELDKERKELAQVKSVIEAQTKLSDDLQ 1487
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQ----LKQQLAQAPAKLRQAQAELEALKDDNDEET 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1488 RQKESAQQLvDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNsafEAQTKLS 1567
Cdd:PRK11281 115 RETLSTLSL-RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGK---VGGKALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1568 DDLK--LQKEDAqrevflvkerLVKEKREFEVKLATLEDIIETLEmrctqmEEERATAYEQINKLENRCQEKDNVKSSQL 1645
Cdd:PRK11281 191 PSQRvlLQAEQA----------LLNAQNDLQRKSLEGNTQLQDLL------QKQRDYLTARIQRLEHQLQLLQEAINSKR 254
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386764405 1646 QVETFK-VECLHHQLKSEMATHNSLVE---DLNRKLAEKVSKldfvQSRLMTEIAEHN-QVKDQL 1705
Cdd:PRK11281 255 LTLSEKtVQEAQSQDEAARIQANPLVAqelEINLQLSQRLLK----ATEKLNTLTQQNlRVKNWL 315
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
1390-1542 |
7.57e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 41.20 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1390 QQLVDNLKVELDKERKELAKvKSVIEAQTKLSDDLQRQKESAQQLEAQ-TKLSDDLQRQKESAQQLVDNLKVELDKERKE 1468
Cdd:cd22656 97 LELIDDLADATDDEELEEAK-KTIKALLDDLLKEAKKYQDKAAKVVDKlTDFENQTEKDQTALETLEKALKDLLTDEGGA 175
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386764405 1469 LAQVKSvieaqtklsDDLQRQKESAQQ-LVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQLVDNL 1542
Cdd:cd22656 176 IARKEI---------KDLQKELEKLNEeYAAKLKAKIDELKALIADDEAKLAAALRLIADLTAADTDLDNLLALI 241
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1222-1629 |
7.91e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 41.36 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1222 QQLVDNLKVELEKERKELAQVKSVIEaqtklsdDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQ-TKLSDDLQR 1300
Cdd:PRK04778 111 ESLLDLIEEDIEQILEELQELLESEE-------KNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQlENLEEEFSQ 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1301 QKE--------SAQQLVDNLKVELDKERKELAQVNSAF-EAQTKLSDDLQREKESAQQLVD--------NLKVELDKERK 1363
Cdd:PRK04778 184 FVEltesgdyvEAREILDQLEEELAALEQIMEEIPELLkELQTELPDQLQELKAGYRELVEegyhldhlDIEKEIQDLKE 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1364 ELAQVKSVIEAQ--TKLSDDLQRQKESAQQLVDNLKVELDkerkelAKvKSVIEAQTKLSDDLQRQKESAQQLEAqtkls 1441
Cdd:PRK04778 264 QIDENLALLEELdlDEAEEKNEEIQERIDQLYDILEREVK------AR-KYVEKNSDTLPDFLEHAKEQNKELKE----- 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1442 dDLQRQKESaQQLVDNlkvELDKERKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDnlkmELDKERKELAQVKSaigAQ 1521
Cdd:PRK04778 332 -EIDRVKQS-YTLNES---ELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQE----ELEEILKQLEEIEK---EQ 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1522 TKLSDDLECQKES---VQQLVDNLKVELEKERKELAKVNsafeaQTKLSDDLKLQKEDAQREVflvkERLVKekrEFEVK 1598
Cdd:PRK04778 400 EKLSEMLQGLRKDeleAREKLERYRNKLHEIKRYLEKSN-----LPGLPEDYLEMFFEVSDEI----EALAE---ELEEK 467
|
410 420 430
....*....|....*....|....*....|.
gi 386764405 1599 LATLEDIIETLEMRCTQMEEERATAYEQINK 1629
Cdd:PRK04778 468 PINMEAVNRLLEEATEDVETLEEETEELVEN 498
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
615-1089 |
8.29e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 8.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 615 IKDVGAEI-------QELRKRNINLENMLSQIADKEasaASHAQHLKQCgELLRAKYEVCRNELIAKNAAQDEL------ 681
Cdd:PRK01156 175 IDMLRAEIsnidyleEKLKSSNLELENIKKQIADDE---KSHSITLKEI-ERLSIEYNNAMDDYNNLKSALNELssledm 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 682 ---VRMMMVPDGETLNGRVRQLIDLEMMHDEHNKM------------------------YAQMLKQLN-ELSAKHDNMTH 733
Cdd:PRK01156 251 knrYESEIKTAESDLSMELEKNNYYKELEERHMKIindpvyknrnyindyfkykndienKKQILSNIDaEINKYHAIIKK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 734 S------HLDFVKRTEiELETKNAQIMAFDEHNNHFDRFLTRIFTLLR-----SRNCPKSTTMGSAT---NFLESMHIEK 799
Cdd:PRK01156 331 LsvlqkdYNDYIKKKS-RYDDLNNQILELEGYEMDYNSYLKSIESLKKkieeySKNIERMSAFISEIlkiQEIDPDAIKK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 800 RFENIE---MLIEGQLLSaddLKRELDDLRSKNEELaKQNINGIIKRNKF-ITSLEVNTEKVKQYITDLEEEAFKRKQKV 875
Cdd:PRK01156 410 ELNEINvklQDISSKVSS---LNQRIRALRENLDEL-SRNMEMLNGQSVCpVCGTTLGEEKSNHIINHYNEKKSRLEEKI 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 876 VQLENTLSKEQSNAKEMAQRLD-IAQQEIKDYHVEAiRFINTIRDRLQQDFNGVNTPQQLGTCMTEFLKMYDQMEVryee 954
Cdd:PRK01156 486 REIEIEVKDIDEKIVDLKKRKEyLESEEINKSINEY-NKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKL---- 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 955 ssSLVEKLTESQAKLEMQVAELQVELENKDTNQHSgaliKQLNDTIQNLEKVNAKLSEDNTVSHTVHSKLNE---SLLKA 1031
Cdd:PRK01156 561 --EDLDSKRTSWLNALAVISLIDIETNRSRSNEIK----KQLNDLESRLQEIEIGFPDDKSYIDKSIREIENeanNLNNK 634
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 386764405 1032 QKELDLRAKIIENLEASERNLSMKLCELKDLKNKLKSSDEKIAQIKETYEEQIKALQA 1089
Cdd:PRK01156 635 YNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDD 692
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1094-1767 |
8.38e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 8.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1094 EAKKNEHLERNQNQSLTQLKEDalencvlMSTKLEELQAKLQEGQQLVDSQKLELDMNRkelaLVKSAYEAQTKLSDDLQ 1173
Cdd:pfam10174 40 ELKKERALRKEEAARISVLKEQ-------YRVTQEENQHLQLTIQALQDELRAQRDLNQ----LLQQDFTTSPVDGEDKF 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1174 RQKESGQQLVDNLKVELEKERKELAHVNSAIgaqtklsDDLECQKESGQQLVdNLKVELEKERKELAQVKSVIEAQTKLS 1253
Cdd:pfam10174 109 STPELTEENFRRLQSEHERQAKELFLLRKTL-------EEMELRIETQKQTL-GARDESIKKLLEMLQSKGLPKKSGEED 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1254 DDLQREKESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDlqRQKESAQQLVDNLK----VELDKERKELAQVNSA 1329
Cdd:pfam10174 181 WERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPD--PAKTKALQTVIEMKdtkiSSLERNIRDLEDEVQM 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1330 FEAQTKLSDDlQREKESAQQLV-----DNLKVELDKERKELAQVKSVIEA-QTKLsDDLQRQKESAQQLVDNLKVELDke 1403
Cdd:pfam10174 259 LKTNGLLHTE-DREEEIKQMEVykshsKFMKNKIDQLKQELSKKESELLAlQTKL-ETLTNQNSDCKQHIEVLKESLT-- 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1404 rkelAKVKSVIEAQTKLSDDLQRQKESAQQLEAQTKLSDDLQRQKESAQQLVDNLKVELD-KERKELAQVKSVIEAQTKL 1482
Cdd:pfam10174 335 ----AKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDvKERKINVLQKKIENLQEQL 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1483 SDDlQRQKESAQQLVDNLKMELDKERKELAQVKSAIGAQTKLSDDLECQKESVQQlvdNLKVELEKERKELAkvnsafEA 1562
Cdd:pfam10174 411 RDK-DKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDR---ERLEELESLKKENK------DL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1563 QTKLSddlKLQKEDAQREVFL--VKER---LVKEKREFEVKLATLEDIIETLEMRCTQMEEERATAYE------------ 1625
Cdd:pfam10174 481 KEKVS---ALQPELTEKESSLidLKEHassLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNaeeavrtnpein 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386764405 1626 -QINKLENRCQ-EKDNVKSSQLQVETF-----KVECLHHQLKSEMATHNSL----VEDLNRKLAEKVSKLDFVQSRLMTE 1694
Cdd:pfam10174 558 dRIRLLEQEVArYKEESGKAQAEVERLlgilrEVENEKNDKDKKIAELESLtlrqMKEQNKKVANIKHGQQEMKKKGAQL 637
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386764405 1695 IAEHNQVKDQLAQITDIPKVVELQHRLEAETAEREEAQNKLAVVTGRLDEITRELDNARLEHGAQ---ILRMEETA 1767
Cdd:pfam10174 638 LEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQleeILEMKQEA 713
|
|
| |
