|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
310-561 |
6.77e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 101.73 E-value: 6.77e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 310 FEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGL 389
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 390 QNNAVRMlcnwltvhpkYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHPSEVDAEVQdaLGVLYNLSGE 469
Cdd:COG2956 92 LDRAEEL----------LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE--LAELYLEQGD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 470 FDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTAL 549
Cdd:COG2956 160 YDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL 239
|
250
....*....|..
gi 24639187 550 TMQAHTNAAREL 561
Cdd:COG2956 240 ELDPSDDLLLAL 251
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
336-568 |
6.67e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 92.38 E-value: 6.67e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 336 QPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMlcnwltvhpkyqhlvaahp 415
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALAD------------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 416 elqaegtslassligpsklrdlqqiYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLG 495
Cdd:COG0457 65 -------------------------YEQALELDPD--DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24639187 496 ASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTMQAHTNAARELPNAAMAA 568
Cdd:COG0457 118 LALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALAL 190
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
286-552 |
2.95e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.94 E-value: 2.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 286 NDNMD-AYKEY-EFAEGNPmSDVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAAL 363
Cdd:COG2956 21 NGQPDkAIDLLeEALELDP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 364 KRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMlcnwltvhpkYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLE 443
Cdd:COG2956 100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEV----------LERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 444 AVRQHPSEVDAevQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGfIR 523
Cdd:COG2956 170 ALKLDPDCARA--LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DD 246
|
250 260
....*....|....*....|....*....
gi 24639187 524 VRYNVGVCCMNLKAYKEAVEHLLTALTMQ 552
Cdd:COG2956 247 LLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
343-580 |
4.42e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.56 E-value: 4.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 343 WQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMlcnwltvhpkYQHLVAAHPELQAEGT 422
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRI----------HQKLLERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 423 SLASSLIGPSKLRDLQQIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGS 502
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPD--DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24639187 503 RSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTMQAHTNAARELpnaaMAATFRGQNQMSESI 580
Cdd:COG2956 159 DYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPR----LAELYEKLGDPEEAL 232
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
343-559 |
1.52e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 92.75 E-value: 1.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 343 WQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMLCNWLTVHPKYQHLvAAHPELQAEGT 422
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAA-AALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 423 SLASSLIGPSKLRDLQQIYLEAVRQHPSEVDAEVQdaLGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGS 502
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRALALNPDNAEALFN--LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 24639187 503 RSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTMQAHTNAAR 559
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
443-568 |
2.74e-17 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 78.51 E-value: 2.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 443 EAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFI 522
Cdd:COG4235 8 QALAANPN--DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 24639187 523 RVRYNVGVCCMNLKAYKEAVEHLLTALTmQAHTNAARELPNAAMAA 568
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLA-LLPADAPARLLEASIAE 130
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
325-527 |
1.82e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 83.12 E-value: 1.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 325 AVLCFEVAAKKQPERAEVWQLLGtSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMLCNWLTVH 404
Cdd:COG3914 20 AAAAAELALAAELEAAALAAALG-LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEAL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 405 PKYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVD 484
Cdd:COG3914 99 ALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD--FAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24639187 485 PQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYN 527
Cdd:COG3914 177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
316-518 |
2.22e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 78.90 E-value: 2.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 316 YLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVR 395
Cdd:COG0457 18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 396 MlcnwltvhpkyqhlvaahpelqaegtslassligpsklrdlqqiYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVD 475
Cdd:COG0457 98 D--------------------------------------------YDKALELDPD--DAEALYNLGLALLELGRYDEAIE 131
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24639187 476 CYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQ 518
Cdd:COG0457 132 AYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
305-549 |
9.26e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 74.73 E-value: 9.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 305 DVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACY 384
Cdd:TIGR02917 21 SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 385 TNEGLQNNAVRMLcnwltvhPKYQHLVAahpELQAEGTSLAS-SLIGPSKLRDLQQIYLEAVRQHPSEVDAEVqdALGVL 463
Cdd:TIGR02917 101 LLQGKFQQVLDEL-------PGKTLLDD---EGAAELLALRGlAYLGLGQLELAQKSYEQALAIDPRSLYAKL--GLAQL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 464 YNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVE 543
Cdd:TIGR02917 169 ALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEK 248
|
....*.
gi 24639187 544 HLLTAL 549
Cdd:TIGR02917 249 HADALL 254
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
265-519 |
1.16e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.87 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 265 RLQDEWQKLADENEHPWLseyndNMDAYKEYEFAEGNPMSDVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQ 344
Cdd:COG3914 42 GLALLLLAALAEAAAAAL-----LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALF 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 345 LLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVrmlcnwltvhpkyqhlvaahpelqaegtsl 424
Cdd:COG3914 117 NLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI------------------------------ 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 425 assligpsklrdlqQIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRL--GASLANGS 502
Cdd:COG3914 167 --------------AALRRALELDPD--NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLlfALRQACDW 230
|
250
....*....|....*..
gi 24639187 503 RSVEAVEAYQQALQLQP 519
Cdd:COG3914 231 EVYDRFEELLAALARGP 247
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
316-568 |
4.34e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.42 E-value: 4.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 316 YLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVR 395
Cdd:TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 396 MLCNWLTVHPKYQ--HLVAAHPELQAEGTSLASSLIgpsklRDLQQiyleavrQHPSevDAEVQDALGVLYNLSGEFDKA 473
Cdd:TIGR02917 657 SLKRALELKPDNTeaQIGLAQLLLAAKRTESAKKIA-----KSLQK-------QHPK--AALGFELEGDLYLRQKDYPAA 722
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 474 VDCYQSALQVDPQNAKTWNRLGASLANGsRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALtmQA 553
Cdd:TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASG-NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV--KK 799
|
250
....*....|....*
gi 24639187 554 HTNAARELPNAAMAA 568
Cdd:TIGR02917 800 APDNAVVLNNLAWLY 814
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
453-552 |
4.64e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 66.75 E-value: 4.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 453 DAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCC 532
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100
....*....|....*....|
gi 24639187 533 MNLKAYKEAVEHLLTALTMQ 552
Cdd:COG4783 83 LKAGDYDEALALLEKALKLD 102
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
407-549 |
5.38e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.91 E-value: 5.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 407 YQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHPSEVDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQ 486
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24639187 487 NAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTAL 549
Cdd:COG5010 87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
433-549 |
5.53e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 66.37 E-value: 5.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 433 KLRDLQQIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQ 512
Cdd:COG4783 19 DYDEAEALLEKALELDPD--NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLE 96
|
90 100 110
....*....|....*....|....*....|....*..
gi 24639187 513 QALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTAL 549
Cdd:COG4783 97 KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
460-549 |
1.90e-12 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 66.86 E-value: 1.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 460 LGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYK 539
Cdd:COG4785 79 RGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYE 158
|
90
....*....|
gi 24639187 540 EAVEHLLTAL 549
Cdd:COG4785 159 LAIADLEKAL 168
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
463-553 |
3.75e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.50 E-value: 3.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 463 LYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAvEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAV 542
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 24639187 543 EHLLTALTMQA 553
Cdd:COG3063 80 AYLERALELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
338-521 |
5.36e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.67 E-value: 5.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 338 ERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMlcnwltvhpkyqhlvaahpel 417
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVL--------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 418 qaegtslassligpsklrdlqqiYLEAVRQHPSEvdAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGAS 497
Cdd:COG4783 61 -----------------------LHEALELDPDE--PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
|
170 180
....*....|....*....|....
gi 24639187 498 LANGSRSVEAVEAYQQALQLQPGF 521
Cdd:COG4783 116 YRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
312-550 |
1.72e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 67.42 E-value: 1.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 312 KGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQN 391
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 392 NAVRMLCNWLTVHPKY------------------QHLVAAHPELQAEGTS-----LASSLIGPSKLRDLQQIYLEAVRQH 448
Cdd:TIGR02917 687 SAKKIAKSLQKQHPKAalgfelegdlylrqkdypAAIQAYRKALKRAPSSqnaikLHRALLASGNTAEAVKTLEAWLKTH 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 449 PSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSvEAVEAYQQALQLQPGFIRVRYNV 528
Cdd:TIGR02917 767 PN--DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-RALEYAERALKLAPNIPAILDTL 843
|
250 260
....*....|....*....|..
gi 24639187 529 GVCCMNLKAYKEAVEHLLTALT 550
Cdd:TIGR02917 844 GWLLVEKGEADRALPLLRKAVN 865
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
316-528 |
2.01e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 67.03 E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 316 YLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPdNQQVLMALAACYTNEGLQNNAVR 395
Cdd:TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP-SSQNAIKLHRALLASGNTAEAVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 396 MLCNWLTVHPKyqHLVAAhpelqaegTSLASSLIGPSKLRDLQQIYLEAVRQHPSevDAEVQDALGVLYnLSGEFDKAVD 475
Cdd:TIGR02917 758 TLEAWLKTHPN--DAVLR--------TALAELYLAQKDYDKAIKHYQTVVKKAPD--NAVVLNNLAWLY-LELKDPRALE 824
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 24639187 476 CYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNV 528
Cdd:TIGR02917 825 YAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
472-584 |
4.36e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.79 E-value: 4.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 472 KAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTM 551
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|...
gi 24639187 552 QAHTNAARELpnAAMAATFRGQNQMSESIWSTL 584
Cdd:COG4235 81 DPDNPEALYL--LGLAAFQQGDYAEAIAAWQKL 111
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
325-499 |
2.82e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.48 E-value: 2.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 325 AVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYtneglqnnavrmlcnwltvh 404
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL-------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 405 pkyqhlvaahpeLQAEGTSLAssligpsklrdlQQIYLEAVRQHPSEVDAevQDALGVLYNLSGEFDKAVDCYQSALQVD 484
Cdd:COG4235 62 ------------LAAGDTEEA------------EELLERALALDPDNPEA--LYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
170
....*....|....*
gi 24639187 485 PQNAKtWNRLGASLA 499
Cdd:COG4235 116 PADAP-ARLLEASIA 129
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
453-567 |
5.36e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.93 E-value: 5.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 453 DAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCC 532
Cdd:COG4785 106 LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAE 185
|
90 100 110
....*....|....*....|....*....|....*...
gi 24639187 533 MNL---KAYKEAVEHLLTALTMQAHTNAARELPNAAMA 567
Cdd:COG4785 186 RKLdpeKALALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
310-487 |
8.95e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.12 E-value: 8.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 310 FEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGL 389
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 390 QNNAVRMlcnwltvhpkYQHLVAAHPElqaegtslassligpsklrdlqqiyleavrqhpsevDAEVQDALGVLYNLSGE 469
Cdd:COG4783 88 YDEALAL----------LEKALKLDPE------------------------------------HPEAYLRLARAYRALGR 121
|
170
....*....|....*...
gi 24639187 470 FDKAVDCYQSALQVDPQN 487
Cdd:COG4783 122 PDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
481-552 |
1.24e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 59.25 E-value: 1.24e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24639187 481 LQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTMQ 552
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD 72
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
305-388 |
3.59e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.40 E-value: 3.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 305 DVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACY 384
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
....
gi 24639187 385 TNEG 388
Cdd:COG4235 96 FQQG 99
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
439-519 |
3.59e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.12 E-value: 3.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 439 QIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQ 518
Cdd:COG5010 75 ALLEQALQLDPN--NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
.
gi 24639187 519 P 519
Cdd:COG5010 153 P 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
243-527 |
1.21e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.17 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 243 DYQRSTEQKEQTAANFNE------------------KFWERLQDEWQKLADE-----NEHPwLSEYNDNMDAYKEYEFAE 299
Cdd:TIGR02917 201 DLLLSLGNIELALAAYRKaialrpnniavllalatiLIEAGEFEEAEKHADAllkkaPNSP-LAHYLKALVDFQKKNYED 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 300 GnpMSDVENPFEKGKEYL-----------SKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYD 368
Cdd:TIGR02917 280 A--RETLQDALKSAPEYLpalllagaseyQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALG 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 369 LQPDNQQVLMALAACYTNEGLQNNAVRMLcnwltvhpkyQHLVAAHPELQAEGTSLASSLIGPSKLR----DLQQiyleA 444
Cdd:TIGR02917 358 LDPDDPAALSLLGEAYLALGDFEKAAEYL----------AKATELDPENAAARTQLGISKLSQGDPSeaiaDLET----A 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 445 VRQHPSEVDAEVQDALGVLYnlSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRV 524
Cdd:TIGR02917 424 AQLDPELGRADLLLILSYLR--SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501
|
...
gi 24639187 525 RYN 527
Cdd:TIGR02917 502 AAN 504
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
316-449 |
5.47e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.77 E-value: 5.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 316 YLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYtneglqnnavR 395
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL----------R 225
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 24639187 396 MLCNW--LTVHPKYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHP 449
Cdd:COG3914 226 QACDWevYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAAA 281
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
454-576 |
9.25e-08 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 53.50 E-value: 9.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 454 AEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCM 533
Cdd:TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 24639187 534 NLKAYKEAVEHLLTALTMQAHTNAARELPNAAMaaTFRGQNQM 576
Cdd:TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL--CALKAGDF 151
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
253-405 |
1.66e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.11 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 253 QTAANFNEKFWERLQDEWQKLADENEHPWLSEYNDNMDAYKEYEFAEGNPMSDVENPFEKGKEYLSKGDIPSAVLCFEVA 332
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24639187 333 AKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMLCNWLTVHP 405
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
361-520 |
8.49e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 51.06 E-value: 8.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 361 AALKRAYDLQPDNQQ----VLMALAACYTNEGLQNNAVRMLCNWLTVHPkYQHLVAAHPELQaegtslassligPSKLRD 436
Cdd:COG3071 176 EALKALWKALPRAERrdpeLAAAYARALIALGDHDEAERLLREALKRQW-DPRLVRLYGRLQ------------GGDPAK 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 437 LQQIYLEAVRQHPSevDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPqNAKTWNRLGASLANGSRSVEAVEAYQQALQ 516
Cdd:COG3071 243 QLKRAEKWLKKHPN--DPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHYRKALA 319
|
....
gi 24639187 517 LQPG 520
Cdd:COG3071 320 LALG 323
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
316-406 |
1.67e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 316 YLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIaALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVR 395
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 24639187 396 MLCNWLTVHPK 406
Cdd:COG3063 81 YLERALELDPS 91
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
357-563 |
3.38e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 50.47 E-value: 3.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 357 PQAIAALKRAYDLQPDNQQVLMALAACYTNEG----------------------------------LQNNAVRMLCNWLT 402
Cdd:PRK11447 164 PEAINQLQRLNADYPGNTGLRNTLALLLFSSGrrdegfavleqmakspagrdaaaqlwygqikdmpVSDASVAALQKYLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 403 VHPKYQHLVAAHPELQ--------------AEGTSLASSLIGPSKLRDLQQiyleAVRQHPSevDAEVQDALGVLYNLSG 468
Cdd:PRK11447 244 VFSDGDSVAAARSQLAeqqkqladpafrarAQGLAAVDSGQGGKAIPELQQ----AVRANPK--DSEALGALGQAYSQQG 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 469 EFDKAVDCYQSALQVDPQ--NAKTW------NRLGASLANGSRSVE------AVEAYQQALQLQPGFIRVRYNVGVCCMN 534
Cdd:PRK11447 318 DRARAVAQFEKALALDPHssNRDKWesllkvNRYWLLIQQGDAALKannlaqAERLYQQARQVDNTDSYAVLGLGDVAMA 397
|
250 260 270
....*....|....*....|....*....|
gi 24639187 535 LKAYKEAVEHLLTALTMQ-AHTNAARELPN 563
Cdd:PRK11447 398 RKDYAAAERYYQQALRMDpGNTNAVRGLAN 427
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
311-568 |
3.56e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 50.08 E-value: 3.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 311 EKGKEYLSKGDIPSAVLCFEVAAKKQPE--RAEVWQLLGTSQTeNEMDpQAIAALKRAYDLQPDNQQVLMALAACYTNEG 388
Cdd:TIGR02917 402 QLGISKLSQGDPSEAIADLETAAQLDPElgRADLLLILSYLRS-GQFD-KALAAAKKLEKKQPDNASLHNLLGAIYLGKG 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 389 LQNNAVRMLCNWLTVHP------------------------KYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEA 444
Cdd:TIGR02917 480 DLAKAREAFEKALSIEPdffpaaanlaridiqegnpddaiqRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKA 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 445 VRQHPSEVDAEVqdALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLG-ASLANGSrSVEAVEAYQQALQLQPGFIR 523
Cdd:TIGR02917 560 AELNPQEIEPAL--ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGrAQLAAGD-LNKAVSSFKKLLALQPDSAL 636
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 24639187 524 VRYNVGVCCMNLKAYKEAVEHLLTALTMQAH-TNAARELPNAAMAA 568
Cdd:TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDnTEAQIGLAQLLLAA 682
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
310-482 |
5.97e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 47.60 E-value: 5.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 310 FEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGL 389
Cdd:COG4785 77 YERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 390 QNNAVRmlcnWLTVHPKYQhlvaahpelqaegtslassligPSKLRDLQQIYLEAVRQHPSEVDAEVQDALGVLYNLSGE 469
Cdd:COG4785 157 YELAIA----DLEKALELD----------------------PNDPERALWLYLAERKLDPEKALALLLEDWATAYLLQGD 210
|
170
....*....|...
gi 24639187 470 FDKAVDCYQSALQ 482
Cdd:COG4785 211 TEEARELFKLALA 223
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
310-475 |
1.30e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.92 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 310 FEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGL 389
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 390 QNNAVRMLCNWLTVHPKYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHPSEVDAEVQDALGVLYNLSGE 469
Cdd:COG0457 160 YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
|
....*.
gi 24639187 470 FDKAVD 475
Cdd:COG0457 240 LYQYRA 245
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
480-581 |
1.81e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 480 ALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALTMQAHTNAAR 559
Cdd:COG5010 46 GRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAY 125
|
90 100
....*....|....*....|..
gi 24639187 560 ElpNAAMAATFRGQNQMSESIW 581
Cdd:COG5010 126 S--NLAALLLSLGQDDEAKAAL 145
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
460-487 |
2.35e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.64 E-value: 2.35e-05
10 20
....*....|....*....|....*...
gi 24639187 460 LGVLYNLSGEFDKAVDCYQSALQVDPQN 487
Cdd:pfam00515 7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
311-517 |
3.19e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 46.08 E-value: 3.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 311 EKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQV-LMALA-ACYTNEG 388
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEkYLYLGqLSGGEEA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 389 LQ--NNAVRMLCNWLTVHPKYQHLVAAhpELQAEGTSLASSLIGpsklrdLQQIYL-----EAvrqhpsevDAEvqdalg 461
Cdd:cd24142 85 LQyyEKGIEILEEELQALQAASAEAEE--EAEELKRKLSSALCA------LAEIYMtdlcdEP--------DAE------ 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 24639187 462 vlynlsgefDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQL 517
Cdd:cd24142 143 ---------QRCEELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
467-560 |
5.69e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.67 E-value: 5.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 467 SGEFDKAVDCYQSALQVDPQNAKTWN---RLGASLANGSRSVEAVEAYQQALQLQPGFIRV---RYNVGVCCMNLKAYKE 540
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDK 85
|
90 100
....*....|....*....|
gi 24639187 541 AVEHLLTALTMQAHTNAARE 560
Cdd:COG1729 86 ARATLEELIKKYPDSEAAKE 105
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
460-487 |
5.82e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 40.51 E-value: 5.82e-05
10 20
....*....|....*....|....*...
gi 24639187 460 LGVLYNLSGEFDKAVDCYQSALQVDPQN 487
Cdd:smart00028 7 LGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
477-549 |
7.90e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 44.52 E-value: 7.90e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24639187 477 YQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTAL 549
Cdd:COG4785 62 RIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
451-553 |
1.09e-04 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 42.28 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 451 EVDAEVQDAL-GVLYNL--SGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQPGFIRVRYN 527
Cdd:TIGR02552 11 GLDSEQLEQIyALAYNLyqQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90
|
90 100
....*....|....*....|....*.
gi 24639187 528 VGVCCMNLKAYKEAVEHLLTALTMQA 553
Cdd:TIGR02552 91 AAECLLALGEPESALKALDLAIEICG 116
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
461-500 |
1.29e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.76 E-value: 1.29e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24639187 461 GVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLAN 500
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
265-404 |
1.82e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.56 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 265 RLQDEWQKLADENEHPW------LSEYNDNMDAYKEYEFA-EGNPmSDVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQP 337
Cdd:COG2956 131 EVLERLLKLGPENAHAYcelaelYLEQGDYDEAIEALEKAlKLDP-DCARALLLLAELYLEQGDYEEAIAALERALEQDP 209
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24639187 338 ERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPDNQQVLmALAACYTNEGLQNNAVRMLCNWLTVH 404
Cdd:COG2956 210 DYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
454-517 |
2.84e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.68 E-value: 2.84e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24639187 454 AEVQDALGVLYNLSGEFDKAVDCYQSALQV--------DPQNAKTWNRLGASLANGSRSVEAVEAYQQALQL 517
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
488-521 |
8.16e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 8.16e-04
10 20 30
....*....|....*....|....*....|....
gi 24639187 488 AKTWNRLGASLANGSRSVEAVEAYQQALQLQPGF 521
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
316-514 |
1.78e-03 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 41.12 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 316 YLSKGDIPSAVLCFEVAAKKQ---PERAEVWQLLGTSQTENEMDPQAIAALKRAYDLQPD----NQQVLMALAACYTNEG 388
Cdd:TIGR00540 178 YQRSGNWDALLKLLPALRKAKalsPEEAARLEQQAYIGLLDEAREEDADALKTWWKQLPRaerqEPELAVAAAEALIQLG 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 389 LQNNAVRMLCNWLTVHPkYQHLVAAHPELQaegtslassligPSKLRDLQQIYLEAVRQHPseVDAEVQDALGVLYNLSG 468
Cdd:TIGR00540 258 DHDEAEKLIEEALKKEW-DPELLRLYGRLQ------------PGDPSPLIKRAEKWLKKHP--DDALLLLALGRLCLRQQ 322
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24639187 469 EFDKAVDCYQSALQVDPQnAKTWNRLGASLANGSRSVEAVEAYQQA 514
Cdd:TIGR00540 323 LWGKAQSYLEASLSLAPT-EEAHLELAQLFEQLGDTEAAAQHYRKS 367
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
467-519 |
2.46e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 40.30 E-value: 2.46e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 24639187 467 SGEFDKAVDCYQSALQVDPQNAKTWNRLGASLANGSRSVEAVEAYQQALQLQP 519
Cdd:cd24142 13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
439-520 |
3.70e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24639187 439 QIYLEAVRQHP-SEVDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWN---RLGASLANGSRSVEAVEAYQQA 514
Cdd:COG1729 14 AAFKAFLKRYPnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDKARATLEEL 93
|
....*.
gi 24639187 515 LQLQPG 520
Cdd:COG1729 94 IKKYPD 99
|
|
| |
