|
Name |
Accession |
Description |
Interval |
E-value |
| Cnn_1N |
pfam07989 |
Centrosomin N-terminal motif 1; This domain has been identified in two microtubule associated ... |
73-142 |
5.21e-15 |
|
Centrosomin N-terminal motif 1; This domain has been identified in two microtubule associated proteins in Schizosaccharomyces pombe, Mto1 and Pcp1. Mto1 has been identified in association with spindle pole body and non-spindle pole body microtubules. The pericentrin homolog Pcp1 is also associated with the fungal centrosome or spindle pole body (SPB). Members of this family have been named centrosomins, and are an essential mitotic centrosome component required for assembly of all other known pericentriolar matrix proteins in order to achieve microtubule-organizing activity in fission yeast. Cnn_1N is a short conserved motif towards the N-terminus. Motif 1 is found to be necessary for proper recruitment of gamma-tubulin, D-TACC (the homolog of vertebrate transforming acidic coiled-coil proteins [TACC]), and Minispindles (Msps) to embryonic centrosomes but is not required for assembly of other centrosome components including Aurora A kinase and CP60 in Drosophila.
Pssm-ID: 462333 [Multi-domain] Cd Length: 69 Bit Score: 70.63 E-value: 5.21e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 73 RELEEQMSALRKENFNLKLRIYFLEEGQPGaRADSSTESLSKQLIDAKIEIATLRKTVDVKMELLKDAAR 142
Cdd:pfam07989 1 REQEKQIDKLKKENFNLKLKIHFLEERLEK-LAPEQIEEALKENIELKVELETLQRELKKLKKLLREAEK 69
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
192-942 |
1.37e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 1.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 192 LRLESEVQRLEEELVNIEARNVAArNELEFMLAERLESLTACEGKIQELAIKNSELVERLEKETAsaessnANRDLGAQL 271
Cdd:TIGR02168 225 LELALLVLRLEELREELEELQEEL-KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK------ELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 272 ADKICELQEAQEKLKERERIHEQACRTIQKLMQKLSSQEKEIKKLNQENEQSANKENDCAKTVISPSSSGRSMSDNEASS 351
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 352 QEMSTNLRVryelKINEQEEKIKQLQTEVKKKTANLQNL-VNKELWEKNREVERLTKLLANQQKTLPQISEESAGEADLQ 430
Cdd:TIGR02168 378 EEQLETLRS----KVAQLELQIASLNNEIERLEARLERLeDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 431 QSF--TEAEYMRALERNKLLQRKVDVLFQRLADDQQNSAVIGQLRLELQQARTEVETADKWRLECVDVCSVLTNRLE--- 505
Cdd:TIGR02168 454 EELerLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvde 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 506 --------ELAGFLNSLL--KHKDVLGVLAADRRNAMRKAVDRSLDLSKSlnMTLNITATSLADQSLAQLCNLSEILYTE 575
Cdd:TIGR02168 534 gyeaaieaALGGRLQAVVveNLNAAKKAIAFLKQNELGRVTFLPLDSIKG--TEIQGNDREILKNIEGFLGVAKDLVKFD 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 576 GDAShKTFNSheeLHAATSMAPTVENLKAENKALKKE----------LEKRRSSEGQRKERRSLPLpsqqfdnqseseaw 645
Cdd:TIGR02168 612 PKLR-KALSY---LLGGVLVVDDLDNALELAKKLRPGyrivtldgdlVRPGGVITGGSAKTNSSIL-------------- 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 646 sepdrkvslarigldETSNSLAAPEQAISESESEGRtcATRQDRNRNSERIAQLEEQIAQKDERMLNVQCQMVELDNRYK 725
Cdd:TIGR02168 674 ---------------ERRREIEELEEKIEELEEKIA--ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 726 QEQLRCLDITQQLEQLRAINEALTAD---LHAIGSHEEERMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQ 802
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEieeLEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 803 ---QQMQEIEQLHADSVETLQSQLQKLKLDAVQQLEEHERLhREALERDWVALTTYQEQAQQLLELQRS----LDYHQEN 875
Cdd:TIGR02168 817 eeaANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL-AAEIEELEELIEELESELEALLNERASleeaLALLRSE 895
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24653383 876 EKELKQTLVENELATRALKKQLDESTLQASKAVMERTKAYNDKLQLEKR-SEELRLQLEALKEEHQKL 942
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKI 963
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
671-989 |
6.20e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 6.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 671 QAISESESEGRTCATRQDRNRNSERIAQLEEQIAQKDERMLNVQCQMVELDNRYKQEQLRCLDITQQLEQLRAINEALTA 750
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 751 DLHAIGS---HEEERMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHADSVETLQSQLQKLk 827
Cdd:COG1196 296 ELARLEQdiaRLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL- 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 828 LDAVQQLEEHERLHREALERDWVALTTYQEQAQQLLELQRSLDYHQENEKELKQTLVENELATRALKKQLDESTLQASKA 907
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 908 VMERTKAYNDKLQLEKRSEELRLQLEALKEEHQKLLQKRS-----------------NSSDVSQSGYTSEEVAVPMGPPS 970
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLllleaeadyegflegvkAALLLAGLRGLAGAVAVLIGVEA 534
|
330
....*....|....*....
gi 24653383 971 GQATTCKQAAAAVLGQRVN 989
Cdd:COG1196 535 AYEAALEAALAAALQNIVV 553
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
695-946 |
3.31e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 695 RIAQLEEQiAQKDERMLNVQCQMVELD-----NRYKQEQLRCLDITQQLEQLRAINEALTADLHAIGSHEEE---RMVEL 766
Cdd:COG1196 201 QLEPLERQ-AEKAERYRELKEELKELEaelllLKLRELEAELEELEAELEELEAELEELEAELAELEAELEElrlELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 767 QRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHADSVETLQSQLQKLKLDAVQQLEEHERLhREALE 846
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL-EEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 847 RDWVALTTYQEQAQQLLELQRSLDYHQENEKELKQTLVENELATRALKKQLDESTLQASKAVMERTKAYNDKLQLEKRSE 926
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260
....*....|....*....|
gi 24653383 927 ELRLQLEALKEEHQKLLQKR 946
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEE 458
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
110-644 |
5.84e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 5.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 110 ESLSKQLIDAKIEIATLRKTVDVKMELLKDAARAISHHEELQRKADIDSQAIIDELQEQIHAYQMAESGGQPVEN--IAK 187
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdiARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 188 TRKMLRLESEVQRLEEELVNIEARNVAARNELEFMLAERLESLTACEGKIQELAIKNSELVERLEKETASAESSNANRDL 267
Cdd:COG1196 308 EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 268 gaqladkicELQEAQEKLKERERIHEQAcRTIQKLMQKLSSQEKEIKKLNQENEQSANKENDCAKTVISPSSSGRSMSDN 347
Cdd:COG1196 388 ---------LLEALRAAAELAAQLEELE-EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 348 EASSQEMSTNLRVRYELKINEQEEKIKQLQTEVKKKTANLQNLVNKELWEknrEVERLTKLLANQQKTLPQISEESAGEA 427
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL---EGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 428 DLQQsfTEAEYMRALERNKLLQRKVDVLFQRLADDQQNSAVIGQLRLELQQARTEVETADKWRLECVDVcSVLTNRLEEL 507
Cdd:COG1196 535 AYEA--ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV-DLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 508 AGFLNSLLKHKDVLGVLAADRRNAMRKAVDRSLDL-SKSLNMTLNITATSLADQSLAQLCNLSEILYTEGDASHKTFNSH 586
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLrEVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 24653383 587 EELHAATSMAptvENLKAENKALKKELEKRRSSEGQRKERRSLPLPSQQFDNQSESEA 644
Cdd:COG1196 692 ELELEEALLA---EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
361-944 |
8.85e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 8.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 361 RYELKINEQEEKIKQLQTEVKKKTANLQNLvNKELWEKNREVERLTKLLANQQKTLPQISEESAGEADLQQSFTEAEyMR 440
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEEL-RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL-EE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 441 ALERNKLLQRKVDVLFQRLADDQQNSAVIGQLRLELQQARTEVETADKwrlecvDVCSVLTNRLEELAGFLNSLLKHKDV 520
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL------EAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 521 LGVLAADRRNAMRKAVDRSLDLSKSLNMTLNITATSLADQSLAQLCNLSEILYTEGDAshktfnshEELHAATSMAPTVE 600
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA--------ELEEEEEALLELLA 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 601 NLKAENKALKKELEKRRSSEGQRKERRSLPLPSQQfDNQSESEAWSEPDRKVSLARIG--LDETSNSLAAPEQAISESES 678
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEA-DYEGFLEGVKAALLLAGLRGLAgaVAVLIGVEAAYEAALEAALA 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 679 EGRTCATRQDRNRNSERIAQLEEQIAQKDERMLNVQCQMVELDNRYKQEQLRCLDITQQLEQLRAINEALTA--DLHAIG 756
Cdd:COG1196 546 AALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVlgDTLLGR 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 757 SHEEERMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHADSVETLQSQLQKLKLDAVQQLEE 836
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 837 HERLHREALERdwvalttyqEQAQQLLELQRSLDYHQENEKELKQTLVENELATRALKKQLDESTLQASKAVMERTKAYN 916
Cdd:COG1196 706 ERELAEAEEER---------LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 24653383 917 DKL------------QLEKRSEELRLQLEALKEEHQKLLQ 944
Cdd:COG1196 777 EALgpvnllaieeyeELEERYDFLSEQREDLEEARETLEE 816
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
186-771 |
5.61e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 5.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 186 AKTRKMLRLESEVQRLEEELVNIEARNVAARNELEfmlaERLESLTACEGKIQELaiKNSELVERLEKETASAESSNANR 265
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELE----ELEAELAELEAELEEL--RLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 266 DLGAQLADKICELQEAQEKLKERERIHEQacrtIQKLMQKLSSQEKEIKKLNQENEQSANKENDCAKTVISPSSSGRSMS 345
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEE----LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 346 DNEASSQEMSTNLRVRYELKINEQEEKIKQLQtEVKKKTANLQNLVNKELWEKNREVERLTKLLANQQKTLPQISEESAG 425
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLE-ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 426 EADLQQSFTEAEYMRALERNKLLQRKVDVLFQRLADDQQNSAVIGQLRLELQ-----QARTEVETADKWRL--ECVDVCS 498
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyegflEGVKAALLLAGLRGlaGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 499 VLTNRLEE-LAGFLNSLLKHKDVLGVLAADRRNAMRKAVDRSLDLSKSLNMTLNITATSLADQSLAQLCNLSEILYTEGD 577
Cdd:COG1196 531 GVEAAYEAaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 578 ASHKTFNSHEELHAATSmapTVENLKAENKALKKELEKRRSSEGQRKERRSLPLPSQQFDNQSESEAWSEPDRKVSLARI 657
Cdd:COG1196 611 ADARYYVLGDTLLGRTL---VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 658 GLDETSNSLAAPEQAISESESEGRTCATRQDRNRNSERIAQLEEQIAQKDERMLnvQCQMVELDNRYKQEQLRCLDITQQ 737
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL--LEEEELLEEEALEELPEPPDLEEL 765
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 24653383 738 LEQLRAINEALTA----DLHAIGSHEE--ERMVELQRQLE 771
Cdd:COG1196 766 ERELERLEREIEAlgpvNLLAIEEYEEleERYDFLSEQRE 805
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
185-507 |
6.41e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 6.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 185 IAKTRKMLRLESEVQRLEEELVNIEARNVAARNELEFMLAERLESLTACEGKIQELAIKNSELvERLEKETASAESSNAN 264
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL-ARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 265 R-----DLGAQLADKICELQEAQEKLKERERIHEQACRTIQKLMQKLSSQEKEIKKLNQE----NEQSANKENDCAKTVI 335
Cdd:TIGR02168 752 LskeltELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 336 SPSSSGRSMSDNEASSQEMSTNLrVRYELKINEQEEKIKQLQTEVKKKTanlqnlvnKELWEKNREVERLTKLLANQQKT 415
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDI-ESLAAEIEELEELIEELESELEALL--------NERASLEEALALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 416 LPQISEE-SAGEADLQQSFTEAEYMRaLERNKLLQRkVDVLFQRLADDQQnsavigqlrLELQQARTEVETADKWRLECV 494
Cdd:TIGR02168 903 LRELESKrSELRRELEELREKLAQLE-LRLEGLEVR-IDNLQERLSEEYS---------LTLEEAEALENKIEDDEEEAR 971
|
330
....*....|...
gi 24653383 495 DVCSVLTNRLEEL 507
Cdd:TIGR02168 972 RRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
65-319 |
6.96e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 6.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 65 LPSQGRSVRELEEQMSALRKENFNLKLRiyfLEEGQPGARADSSTESLS--KQLIDAKIEIATLRKTVDVKMELLKDAAR 142
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQL---LEELNKKIKDLGEEEQLRvkEKIGELEAEIASLERSIAEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 143 aishhEELQRKADIDS-QAIIDELQEQIHAYQM-AESGGQPVENIAKTRKMLRleSEVQRLEEELVNIEARNVAARNELE 220
Cdd:TIGR02169 323 -----RLAKLEAEIDKlLAEIEELEREIEEERKrRDKLTEEYAELKEELEDLR--AELEEVDKEFAETRDELKDYREKLE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 221 fMLAERLESLTACEGKIQELAIKNSELVERLEKETASAESSNAnrDLGAQLADKICELQEAQEKLKERERIHEQACRTIQ 300
Cdd:TIGR02169 396 -KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN--ELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
250
....*....|....*....
gi 24653383 301 KLMQKLSSQEKEIKKLNQE 319
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRE 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
736-956 |
8.97e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 8.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 736 QQLEQLRAINEALTADLHAIgsheEERMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHADS 815
Cdd:COG4942 27 AELEQLQQEIAELEKELAAL----KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 816 VETLQSQLQK-------------LKLDAVQQLEEHERLHREALERDWVALTTYQEQAQQLLELQRSLdyhQENEKELKQT 882
Cdd:COG4942 103 KEELAELLRAlyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL---EAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24653383 883 LVENELATRALKKQLDESTLQASKAVMERTKAYNDKLQLEKRSEELRLQLEALKEEHQKLLQKRSNSSDVSQSG 956
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
762-947 |
1.06e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 762 RMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHADSVETLQSQLQKLKlDAVQQLEEHERlH 841
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS-RLEQQKQILRE-R 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 842 REALERDWVALTTYQEQA-QQLLELQRSLDYHQENEKELKQ--TLVENELATRALKKQLDESTLQASKAVMERTKA---- 914
Cdd:TIGR02168 311 LANLERQLEELEAQLEELeSKLDELAEELAELEEKLEELKEelESLEAELEELEAELEELESRLEELEEQLETLRSkvaq 390
|
170 180 190
....*....|....*....|....*....|....
gi 24653383 915 -YNDKLQLEKRSEELRLQLEALKEEHQKLLQKRS 947
Cdd:TIGR02168 391 lELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
68-381 |
1.53e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 68 QGRSVRELEEQMSALRKENFNLKlriyfleegQPGARADSSTESLSKQLIDAKIEIATLRKTVdvkmellkdaaRAISHH 147
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEELE---------EELEQLRKELEELSRQISALRKDLARLEAEV-----------EQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 148 EELQRKADIDSQAIIDELQEQIHAYQMAEsggqpvenIAKTRKMLRLESEVQRLEEELVNIEARNVAARNELEFM---LA 224
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEEL--------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLneeAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 225 ERLESLTACEGKIQELAIKNSELVERLEKETASAESSNANR-DLGAQLADKICELQEAQEKLKERERIHEQACRTIQKLM 303
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 304 QKLSSQEKEIKKLNQE----NEQSANKENDCAKTVISPSSSGRSMSDNEASSQEMSTNLRVRYELKINEQEEKIKQLQTE 379
Cdd:TIGR02168 901 EELRELESKRSELRREleelREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
..
gi 24653383 380 VK 381
Cdd:TIGR02168 981 IK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
684-945 |
1.55e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 684 ATRQDRNRNSERIAQLEEQIAQKDERMLNVQCQMVELDNRYKQEQLRCLDITQQLE----QLRAINEALtADLHAIGSHE 759
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISrleqQKQILRERL-ANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 760 EERMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLhadsVETLQSQLQKLKlDAVQQLEEHER 839
Cdd:TIGR02168 322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR----LEELEEQLETLR-SKVAQLELQIA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 840 LHREALERdwvalttyqeQAQQLLELQRSLDYHQENEKELKQTLVENELAtrALKKQLDESTLQASKAVMERTKAYNDKL 919
Cdd:TIGR02168 397 SLNNEIER----------LEARLERLEDRRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEELQEELERLEEALE 464
|
250 260
....*....|....*....|....*.
gi 24653383 920 QLEKRSEELRLQLEALKEEHQKLLQK 945
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQAR 490
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
736-948 |
5.00e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 5.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 736 QQLEQLRAINEALTADLHAIGSHEEER----MVELQRQLELKNQQIDQLKLAHSTLTAdsqitemELQALQQQMQEIEQl 811
Cdd:COG4913 252 ELLEPIRELAERYAAARERLAELEYLRaalrLWFAQRRLELLEAELEELRAELARLEA-------ELERLEARLDALRE- 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 812 hadSVETLQSQLQKLKLDAVQQLEEHERLHREALERDWVALTTYQEQAQQL-LELQRSLDYHQENEKELKQTLVENELAT 890
Cdd:COG4913 324 ---ELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALgLPLPASAEEFAALRAEAAALLEALEEEL 400
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 24653383 891 RALKKQLDEstlqaskavmertkayndklqLEKRSEELRLQLEALKEEHQKLLQKRSN 948
Cdd:COG4913 401 EALEEALAE---------------------AEAALRDLRRELRELEAEIASLERRKSN 437
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
103-944 |
6.51e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 6.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 103 ARADSSTESLSKQLIDAKIEIATLRKTVDVKMELLKDAARAISHHEELQRKADIDSQAIIDELQEQIHAYQmaesggqpv 182
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLT--------- 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 183 ENIAKTRKmlRLESEVQRLEEELVNIEARNVAARNELEFMLAERLESLTACEGKIQELAIKNSELVERLEK-----ETAS 257
Cdd:TIGR02169 258 EEISELEK--RLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKleaeiDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 258 AESSNANRDLGAQLADK---ICELQEAQEKLKERERIHEQACRTIQKLMQKLSSQEKEIKKLNQENEqSANKENDCAKTV 334
Cdd:TIGR02169 336 AEIEELEREIEEERKRRdklTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN-ELKRELDRLQEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 335 ISPSSSGRSMSDNEASsqemstnlrvRYELKINEQEEKIKQLQTEVKKKTANLQNLVnKELWEKNREVERLTKLLANQQK 414
Cdd:TIGR02169 415 LQRLSEELADLNAAIA----------GIEAKINELEEEKEDKALEIKKQEWKLEQLA-ADLSKYEQELYDLKEEYDRVEK 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 415 TLPQISEE-SAGEADLQQSFTEAEYMRALErnKLLQRKVDVLFQRLADdqqnsavIGQLRLELQQArteVETADKWRLEC 493
Cdd:TIGR02169 484 ELSKLQRElAEAEAQARASEERVRGGRAVE--EVLKASIQGVHGTVAQ-------LGSVGERYATA---IEVAAGNRLNN 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 494 VDV---------CSVLTNRLEELAGFLnSLLKHKDVLGVLaadRRNAMRKAVDRSLDLSKSLNMTLNITATSLADQSLAQ 564
Cdd:TIGR02169 552 VVVeddavakeaIELLKRRKAGRATFL-PLNKMRDERRDL---SILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 565 LCNLS--------------EILYTEGDASHKTFNSHEELHAATSMAPTVENLKAENKALKKELekrrssEGQRKERRSLp 630
Cdd:TIGR02169 628 DIEAArrlmgkyrmvtlegELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKREL------SSLQSELRRI- 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 631 lpsqqfdnqsESEawsepdrkvslarigLDETSNSLAAPEQAISESESEGRtcATRQDRNRNSERIAQLEEQIAQKDERM 710
Cdd:TIGR02169 701 ----------ENR---------------LDELSQELSDASRKIGEIEKEIE--QLEQEEEKLKERLEELEEDLSSLEQEI 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 711 LNVQCQMVELDNRYKQEQLrclditqQLEQLRAINEALTADLhaigshEEERMVELQRQLELKNQQIDQLKLAHSTLTAD 790
Cdd:TIGR02169 754 ENVKSELKELEARIEELEE-------DLHKLEEALNDLEARL------SHSRIPEIQAELSKLEEEVSRIEARLREIEQK 820
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 791 SQITEMELQALQQQMQEIEQLHAD------SVETLQSQLQKLKLDAVQQLEEHErlhrealerdwVALTTYQEqaqQLLE 864
Cdd:TIGR02169 821 LNRLTLEKEYLEKEIQELQEQRIDlkeqikSIEKEIENLNGKKEELEEELEELE-----------AALRDLES---RLGD 886
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 865 LQRSLDYHQENEKELKQTLVENElATRALKKQLDESTLQASKAVMERTKAYNDKLQLEKRSEELRLQLEALKEEHQKLLQ 944
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELE-AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEE 965
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
59-322 |
7.84e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 7.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 59 GGGNSPLPSQGRSVRELEE-QMSALRKENFNLKLRIYFLEEgqpgARADSSTESLSKQLIDAKIEIATLRKTVDvkmELL 137
Cdd:TIGR02169 657 GGSRAPRGGILFSRSEPAElQRLRERLEGLKRELSSLQSEL----RRIENRLDELSQELSDASRKIGEIEKEIE---QLE 729
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 138 KDAARAISHHEELQRKADIDSQAI-------------IDELQEQIHAYQMAES------GGQPVENIaktrkmlrlESEV 198
Cdd:TIGR02169 730 QEEEKLKERLEELEEDLSSLEQEIenvkselkelearIEELEEDLHKLEEALNdlearlSHSRIPEI---------QAEL 800
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 199 QRLEEELVNIEARnvaaRNELEFMLAERLESLTACEGKIQELAIKNSELVERLEKETASAESSNanrdlgAQLADKICEL 278
Cdd:TIGR02169 801 SKLEEEVSRIEAR----LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN------GKKEELEEEL 870
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 24653383 279 QEAQEKLKERERIHEQACRTIQKLMQKLSSQEKEIKKLNQENEQ 322
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
691-918 |
8.74e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 8.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 691 RNSERIAQLEEQIAQKDERMLNVQCQMVELDNRYKQeqlrcldITQQLEQLRAINEALTADLhaigsheeeRMVELQRQL 770
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDA-------LQERREALQRLAEYSWDEI---------DVASAEREI 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 771 ELKNQQIDQLKLAHStltadsqitemELQALQQQMQEIEQLHADSVETLQsQLQKLKLDAVQQLEEHERLHREALERDWV 850
Cdd:COG4913 671 AELEAELERLDASSD-----------DLAALEEQLEELEAELEELEEELD-ELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24653383 851 ALTTYQEQAQQLLELQRSLDYHQENEKELKQTLVENelaTRALKKQLDestlQASKAVMERTKAYNDK 918
Cdd:COG4913 739 AEDLARLELRALLEERFAAALGDAVERELRENLEER---IDALRARLN----RAEEELERAMRAFNRE 799
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
629-910 |
1.73e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 49.14 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 629 LPLPSQQFDNQSESEAWSEPDRKVSLARIgldeTSNSLAAPEQAISESESEgRTCATRQDRNRNSERIAQLEEQIAQKDE 708
Cdd:PRK11281 20 LCLSSAFARAASNGDLPTEADVQAQLDAL----NKQKLLEAEDKLVQQDLE-QTLALLDKIDRQKEETEQLKQQLAQAPA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 709 RMLNVQCQMVELDN--------RYKQEQLRCLD--ITQQLEQLRAINEAL-TADLHAIGSHEE-ER----MVELQRQLEL 772
Cdd:PRK11281 95 KLRQAQAELEALKDdndeetreTLSTLSLRQLEsrLAQTLDQLQNAQNDLaEYNSQLVSLQTQpERaqaaLYANSQRLQQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 773 KNQQIDQLKLAHSTLTADSQIT-EMELQALQQQMQEIEQLHADSvETLQSQLQK---LKLDAVQQLEEHERLHREALERD 848
Cdd:PRK11281 175 IRNLLKGGKVGGKALRPSQRVLlQAEQALLNAQNDLQRKSLEGN-TQLQDLLQKqrdYLTARIQRLEHQLQLLQEAINSK 253
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24653383 849 WVALTtyQEQAQQLLELQRSLD------YHQENE--KELKQTLVE-----NELATRAL--KKQLDeSTLQASKAVME 910
Cdd:PRK11281 254 RLTLS--EKTVQEAQSQDEAARiqanplVAQELEinLQLSQRLLKateklNTLTQQNLrvKNWLD-RLTQSERNIKE 327
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
72-492 |
2.72e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 72 VRELEEQMSALRKENFNLKLRIYFLEEGQPGARADSSTESLSKQLIDAKIEI----ATLRKTVDVKMELLKDAARAISHH 147
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIekrlSRLEEEINGIEERIKELEEKEERL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 148 EELQRKADiDSQAIIDELQEQIHAYQMA------------ESGGQPVENIAKtrKMLRLESEVQRLEEELVNIEARnvaa 215
Cdd:PRK03918 341 EELKKKLK-ELEKRLEELEERHELYEEAkakkeelerlkkRLTGLTPEKLEK--ELEELEKAKEEIEEEISKITAR---- 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 216 RNELEFMLAERLESLTACEGKIQELAIKNSELVERLEKE---TASAESSNANRDLgAQLADKICELQEAQEKLkERERIH 292
Cdd:PRK03918 414 IGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKElleEYTAELKRIEKEL-KEIEEKERKLRKELREL-EKVLKK 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 293 EQACRTIQKLMQKLSSQEKEIKKLNQENEQSANKENDCAKTVISPSSSGRSMSDNEASSQEMSTNLRVRYELKINEQEEK 372
Cdd:PRK03918 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEE 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 373 IKQLQT-----------EVKKKTANLQNLVNKELWEKN--REVERLTKLLANQQKTLPQISEESAGE-----------AD 428
Cdd:PRK03918 572 LAELLKeleelgfesveELEERLKELEPFYNEYLELKDaeKELEREEKELKKLEEELDKAFEELAETekrleelrkelEE 651
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24653383 429 LQQSFTEAEYMRALERNKLLQRKVDVLFQRLaddQQNSAVIGQLRLELQQARTEVETADKWRLE 492
Cdd:PRK03918 652 LEKKYSEEEYEELREEYLELSRELAGLRAEL---EELEKRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
623-883 |
4.16e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 623 RKERRSLPLPSQQFDNQSESEAWSEPDRKVSLARIGLDETSNSLAAPEQAISESESEGRTCATRQDR-----NRNSERIA 697
Cdd:TIGR02168 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEElqkelYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 698 QLEEQIAQKDERMLNVQCQMVELdNRYKQEQLRCLDITQ--------QLEQLRAINEALTADL---HAIGSHEEERMVEL 766
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEEL-EAQLEELESKLDELAeelaeleeKLEELKEELESLEAELeelEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 767 QRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQlhadSVETLQSQLQKLKLDAVQ-QLEEHERLHREAL 845
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ----EIEELLKKLEEAELKELQaELEELEEELEELQ 453
|
250 260 270
....*....|....*....|....*....|....*...
gi 24653383 846 ERDWVALTTYQEQAQQLLELQRSLDYHQENEKELKQTL 883
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
72-879 |
5.65e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 5.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 72 VRELEEQMSALRKENFNLKLRIYFLEegQPGARADSSTESLSKQLIDAKIEIATLRKTVDVKMELLKdaaraishheelq 151
Cdd:TIGR02168 276 VSELEEEIEELQKELYALANEISRLE--QQKQILRERLANLERQLEELEAQLEELESKLDELAEELA------------- 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 152 rkadiDSQAIIDELQEQIHAyqmaesggqpveniaktrkmlrLESEVQRLEEELVNIEARNVAARNELEFM---LAERLE 228
Cdd:TIGR02168 341 -----ELEEKLEELKEELES----------------------LEAELEELEAELEELESRLEELEEQLETLrskVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 229 SLTACEGKIQELAIKNSELVERLEKETASAESSNANRDLGaqladkicELQEAQEKLKERERIHEQACRTIQKLMQKLSS 308
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--------ELKELQAELEELEEELEELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 309 QEKEIKKLNQENEQSANKEndcaktvispsssgrsmsdNEASSQEMSTNLRVRYELKINEQEEKIKQLQTEVKKKTANLQ 388
Cdd:TIGR02168 466 LREELEEAEQALDAAEREL-------------------AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 389 NLVN-KELWEKNREV---ERLTKLLANqqktlpqiSEESAGEAdlqqsfteaeyMRALERNKLlqRKVDVLFQRLADDQQ 464
Cdd:TIGR02168 527 ELISvDEGYEAAIEAalgGRLQAVVVE--------NLNAAKKA-----------IAFLKQNEL--GRVTFLPLDSIKGTE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 465 NSAVIGQLRlelqqartevetadKWRLECVDVCSVLTNRLEELAGFLNSLLKhkdvlGVLAADRrnamrkaVDRSLDLSK 544
Cdd:TIGR02168 586 IQGNDREIL--------------KNIEGFLGVAKDLVKFDPKLRKALSYLLG-----GVLVVDD-------LDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 545 SLNMTLNItaTSLADQSLAqlcnlSEILYTEGDAS--HKTFNSHEELHAATS----MAPTVENLKAENKALKKELEKRRS 618
Cdd:TIGR02168 640 KLRPGYRI--VTLDGDLVR-----PGGVITGGSAKtnSSILERRREIEELEEkieeLEEKIAELEKALAELRKELEELEE 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 619 SEgqRKERRSLPLPSQQFDNQSES-EAWSEPDRKVSLARIGLDETSNSLAAPEQAISE--SESEGRTCATRQDRNRNSER 695
Cdd:TIGR02168 713 EL--EQLRKELEELSRQISALRKDlARLEAEVEQLEERIAQLSKELTELEAEIEELEErlEEAEEELAEAEAEIEELEAQ 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 696 IAQLEEQIAQKDERMLNVQCQMVELDNRYKQEQLRCLDITQQL-----------EQLRAINEALTADLHAIgSHEEERMV 764
Cdd:TIGR02168 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIaaterrledleEQIEELSEDIESLAAEI-EELEELIE 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 765 ELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLH---ADSVETLQSQLQKLKLDAVQQLEEHERLH 841
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELeelREKLAQLELRLEGLEVRIDNLQERLSEEY 949
|
810 820 830
....*....|....*....|....*....|....*...
gi 24653383 842 REALErdwVALTTYQEQAQQLLELQRSLDYHQENEKEL 879
Cdd:TIGR02168 950 SLTLE---EAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
600-944 |
6.56e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 6.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 600 ENLKAENKALKKELEKRRSSEGQRKERRSlplpsqQFDNQSESEAWSEP---DRKVSLARIGLDETSNSLAAPEQaises 676
Cdd:pfam17380 299 ERLRQEKEEKAREVERRRKLEEAEKARQA------EMDRQAAIYAEQERmamERERELERIRQEERKRELERIRQ----- 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 677 esegRTCATRQDRNRNSERIaQLEEQiaQKDERMLnvqcQMVELDNRYK-QEQLRCLDITQQLEQLRAINEaltadlhai 755
Cdd:pfam17380 368 ----EEIAMEISRMRELERL-QMERQ--QKNERVR----QELEAARKVKiLEEERQRKIQQQKVEMEQIRA--------- 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 756 gSHEEERMVELQRQLELKNQQIDQLKLahstltadsqiTEMELQalqqqmQEIEQLHADSVETLQSQLQKLKLDAVQQLE 835
Cdd:pfam17380 428 -EQEEARQREVRRLEEERAREMERVRL-----------EEQERQ------QQVERLRQQEEERKRKKLELEKEKRDRKRA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 836 EHERlhREALERDwvalttYQEQAQQLLELQRSLDYHQENEKELKQTLVENELATRALKKQLDESTLQASKAVMErtkay 915
Cdd:pfam17380 490 EEQR--RKILEKE------LEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQE----- 556
|
330 340
....*....|....*....|....*....
gi 24653383 916 ndklQLEKRSEElRLQLEALKEEHQKLLQ 944
Cdd:pfam17380 557 ----QMRKATEE-RSRLEAMEREREMMRQ 580
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
694-847 |
7.97e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 7.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 694 ERIAQLEEQIAQKdERMLNVQCQMVELDNRYKQEQLRCLDITQQLEQLRAINEALTADLHAIGSHEEERMVELQRQLELK 773
Cdd:COG3096 512 QRLQQLRAQLAEL-EQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQL 590
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24653383 774 NQQIDQL-KLAHSTLTADSQitemeLQALQQQMQEIEQLHADSVETLQSQLQKLKldAVQQLEEHERLHREALER 847
Cdd:COG3096 591 RARIKELaARAPAWLAAQDA-----LERLREQSGEALADSQEVTAAMQQLLERER--EATVERDELAARKQALES 658
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
760-949 |
1.07e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 760 EERMVELQRQLEL------KNQQIDQLKLAHSTLTADSQITEMElqALQQQMQEIEQLHadsvETLQSQLQKLKldavQQ 833
Cdd:TIGR02168 199 ERQLKSLERQAEKaerykeLKAELRELELALLVLRLEELREELE--ELQEELKEAEEEL----EELTAELQELE----EK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 834 LEEHERLHREALERDWVALTTYQEQAQQLLELQRSLDYHQENEKELKQTLVENELATRALKKQLDEstLQASKAvmertk 913
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE--LAEELA------ 340
|
170 180 190
....*....|....*....|....*....|....*.
gi 24653383 914 ayndklQLEKRSEELRLQLEALKEEHQKLLQKRSNS 949
Cdd:TIGR02168 341 ------ELEEKLEELKEELESLEAELEELEAELEEL 370
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
92-870 |
1.12e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.50 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 92 RIYFLEEGQPGARADSSTESLSKQLIDAKIEIATL-RKTVDVKMELLKDAARAISHHEELQRKADIDS--QAIIDELQEQ 168
Cdd:pfam02463 154 RRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELiIDLEELKLQELKLKEQAKKALEYYQLKEKLELeeEYLLYLDYLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 169 IHAYQMAESGGQPVENIAKTRKMLRLEsevQRLEEELVNIEARNVAARNELEFMLAERLESLTACEGKIQELaIKNSELV 248
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEI---EKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL-LKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 249 ERLEKETASAESSNANRDLGAQLADKICELQEAQEKLKERERI-HEQACRTIQKLMQKLSSQEKEI---KKLNQENEQSA 324
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREaEEEEEEELEKLQEKLEQLEEELlakKKLESERLSSA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 325 NKENDCAKTVISPSSSGRSMSDNEASSQEMSTNLRVRYELKINEQEEKIKQLQTEVKKKTANLQNLVNKELWEKNREVER 404
Cdd:pfam02463 390 AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 405 LTKLLANQQKTLPQISEESAGEADLQQSFTEAEYMRALERNKLLQRKVDVLFQRL------------ADDQQNSAVIGQL 472
Cdd:pfam02463 470 SEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIisahgrlgdlgvAVENYKVAISTAV 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 473 RLELQQARTEVETADKWRLECVDVCSVLTNRLEELAGFLNSLLKHKDVLGVLAADRRNAMRKAVDRSLDL---------S 543
Cdd:pfam02463 550 IVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDkrakvvegiL 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 544 KSLNMTLNITATSLADQSLAQLCNLSEILYTEGDASHKTFNSHEELHAA--TSMAPTVENLKAENKALKKELEKRRSSEG 621
Cdd:pfam02463 630 KDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIqeLQEKAESELAKEEILRRQLEIKKKEQREK 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 622 QRKERRSLPLPSQQFDNQSESEAWSEPDRKVSLARIGLDETSNSLAAPEQAISESESEGRTCATRQDRNRNSERIAQLEE 701
Cdd:pfam02463 710 EELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVE 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 702 QIAQKDERMLNVQCQMVELDNRYKQEQLRCLDITQQLEQLR--------------AINEALTADLHAIGSHEEERMVELQ 767
Cdd:pfam02463 790 EEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIkeeeleelalelkeEQKLEKLAEEELERLEEEITKEELL 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 768 RQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHADSVETLQSQLQKLKLDAVQQLEEHERLHREALER 847
Cdd:pfam02463 870 QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKE 949
|
810 820
....*....|....*....|...
gi 24653383 848 DWVALTTYQEQAQQLLELQRSLD 870
Cdd:pfam02463 950 KEENNKEEEEERNKRLLLAKEEL 972
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
684-889 |
1.18e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 684 ATRQDRNRNSERIAQLEEQIAQKDERMLN--VQCQMVELDNRYKQEQLRCLDITQQLEQLRAINEALTADLHAIGSHEEE 761
Cdd:COG3206 172 EARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGS 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 762 RMVELQRQLElkNQQIDQLKLAHSTLTAdsQITEM---------ELQALQQQMQEIEQLHADSVETLQSQLQKLKLDAVQ 832
Cdd:COG3206 252 GPDALPELLQ--SPVIQQLRAQLAELEA--ELAELsarytpnhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQA 327
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 24653383 833 QLEEHERLHREALERdwvaLTTYQEQAQQLLELQRSLDYHQENEKELKQTLVENELA 889
Cdd:COG3206 328 REASLQAQLAQLEAR----LAELPELEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
188-380 |
1.67e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 188 TRKMLRLESEVQRLEEELVNIEARNVAARNELEfMLAERLESLTACEgKIQELAIKNSEL---VERLEKETASAESSNAn 264
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD-ALQERREALQRLA-EYSWDEIDVASAereIAELEAELERLDASSD- 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 265 rdlgaqladkicELQEAQEKLKERERIHEQACRTIQKLMQKLSSQEKEIKKLNQENEQSANKENDCAKTVISPSSSGRSM 344
Cdd:COG4913 686 ------------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190
....*....|....*....|....*....|....*.
gi 24653383 345 SDNEASSQEMSTNLRVRYELKINEQEEKIKQLQTEV 380
Cdd:COG4913 754 RFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
609-945 |
2.46e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 609 LKKELEKRRSSEGQRKERRSLPLPSQQFDNQSESEAWSEPDRKVSLARIGLDETSNSLAAPEQAISESESEGRTCATRQD 688
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 689 RNRNSERIAQLEEQIAQKDERmlnvqcqMVELDNRYKQEQLRCLDITQQLEQLRAINEALTADLHAIGSHEEERMVELQR 768
Cdd:COG4717 127 LLPLYQELEALEAELAELPER-------LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 769 QLELKNQQIDQLKLAHSTLtadsqitEMELQALQQQMQEIE--QLHADSVETLQSQLQKLKLDAVQQLEEHERLHREALE 846
Cdd:COG4717 200 ELEELQQRLAELEEELEEA-------QEELEELEEELEQLEneLEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLI 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 847 RDW--VALTTYQEQAQQLLELQRSLDYHQENEKELKQTLVENELATRALKKQLDESTLQASKAVMERTKAYND-----KL 919
Cdd:COG4717 273 LTIagVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRieelqEL 352
|
330 340
....*....|....*....|....*.
gi 24653383 920 QLEKRSEELRLQLEALKEEHQKLLQK 945
Cdd:COG4717 353 LREAEELEEELQLEELEQEIAALLAE 378
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
133-488 |
3.04e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 133 KMELLKDAARAISHHEELQRKADIDSQAiiDELQEQIHAYQMAESGGQPVENIAKTRKMLRLESEVQRLEEELVNIEARN 212
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKA--DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 213 VA--ARNELEfmlAERLESLTACEGKIQELAIKNSELVERLEKETASAESSNANRDLGAQL-------------ADKICE 277
Cdd:PTZ00121 1523 KAdeAKKAEE---AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrkaeeakkaeearIEEVMK 1599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 278 LQEAQEKLKERERIHEQACRTIQKLMQKLSSQEKEIKKLNQENEQSANKendcAKTVISPSSSGRSMSDNEASSQEmsTN 357
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK----AEELKKAEEENKIKAAEEAKKAE--ED 1673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 358 LRVRYELKINEQEEKIKQLQTEVKKKTANLQNLVNKELWEKNREVERLTKllanQQKTLPQISEESAGEADLQQSFTEAE 437
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK----AEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 24653383 438 YMRALERNKLLQRKVDVLFQRLADDQQNSAVIGQ-LRLELQQARTEVETADK 488
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEeLDEEDEKRRMEVDKKIK 1801
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
671-847 |
3.09e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 671 QAISESESEGRTCATRQDRNRNSERIAQLEEQIAQKDERMLNVQCQMVELDNRYKQEQLRCLDITQQLEQL--RAInEAL 748
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggDRL-EQL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 749 TADLHaigsHEEERMVELQRQLELKNQQIDQLKLAHSTltadsqiTEMELQALQQQMQEIEQLHADSVETLQSQLQKLKL 828
Cdd:COG4913 344 EREIE----RLERELEERERRRARLEALLAALGLPLPA-------SAEEFAALRAEAAALLEALEEELEALEEALAEAEA 412
|
170 180
....*....|....*....|.
gi 24653383 829 DAVQQLEEHERLHRE--ALER 847
Cdd:COG4913 413 ALRDLRRELRELEAEiaSLER 433
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
734-946 |
3.72e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 3.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 734 ITQQLEQLRAINEALTADLHAIgsHEEERMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHA 813
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEF--RQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALP 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 814 DSVETlqSQLQKLKldavQQLEEHERLHREALERdwvalttYQEQAQQLLELQRSLD-YHQENEKELKQTLVENELATRA 892
Cdd:COG3206 258 ELLQS--PVIQQLR----AQLAELEAELAELSAR-------YTPNHPDVIALRAQIAaLRAQLQQEAQRILASLEAELEA 324
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 24653383 893 LKKQLDEstLQASKAVMErtKAYNDKLQLEKRSEELRLQLEALKEEHQKLLQKR 946
Cdd:COG3206 325 LQAREAS--LQAQLAQLE--ARLAELPELEAELRRLEREVEVARELYESLLQRL 374
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
279-388 |
4.39e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.43 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 279 QEAQEKLKERERIHEQACRTIQKLMQKLSSQEKEIKKLNQENEQSANKENDCAK----TVISPSSSGRSMSDNEASSQEM 354
Cdd:PRK00409 530 RELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKkeadEIIKELRQLQKGGYASVKAHEL 609
|
90 100 110
....*....|....*....|....*....|....
gi 24653383 355 STNLRvryelKINEQEEKIKQLQTEVKKKTANLQ 388
Cdd:PRK00409 610 IEARK-----RLNKANEKKEKKKKKQKEKQEELK 638
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
686-874 |
4.72e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 686 RQDRNRNSERIAQLEEQIAQKDERMLNVQ-----CQMV------ELDNRYKQEQLRclDITQQLEQLRAINEALTadlha 754
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQerreaLQRLaeyswdEIDVASAEREIA--ELEAELERLDASSDDLA----- 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 755 igsheeermvELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHaDSVETLQSQLQKLKLDAV--- 831
Cdd:COG4913 689 ----------ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL-EAAEDLARLELRALLEERfaa 757
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24653383 832 QQLEEHERLHREALERDWVALTTYQEQAQQLLELQRSlDYHQE 874
Cdd:COG4913 758 ALGDAVERELRENLEERIDALRARLNRAEEELERAMR-AFNRE 799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
765-945 |
4.83e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 4.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 765 ELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHAD---SVETLQSQLQKLKLDaVQQLEEHERLH 841
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAleqELAALEAELAELEKE-IAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 842 REALERDWVALTTYQEQ--------AQQLLELQRSLDYHQENEKELKQTLvenelatRALKKQLDEstLQASKAVMERTK 913
Cdd:COG4942 103 KEELAELLRALYRLGRQpplalllsPEDFLDAVRRLQYLKYLAPARREQA-------EELRADLAE--LAALRAELEAER 173
|
170 180 190
....*....|....*....|....*....|..
gi 24653383 914 AynDKLQLEKRSEELRLQLEALKEEHQKLLQK 945
Cdd:COG4942 174 A--ELEALLAELEEERAALEALKAERQKLLAR 203
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
587-941 |
5.35e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 587 EELHAATSMAPTVENLKAENKALKKELEKRRSSEGQRKERRSLPLPSQQFDNQSESEAWSEPDRKVSLARIGLDETSNSL 666
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 667 AAPEQAisESESEGRTCATRQDRNRNSERIAQLEEQIAQKDERMLNVQcqmvelDNRYKQEQLRCLDITQQLEQLRAINE 746
Cdd:PTZ00121 1461 EAKKKA--EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA------EAKKKADEAKKAEEAKKADEAKKAEE 1532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 747 ALTADlHAIGSHEEERMVELQRQLELKN----QQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHADSVETLQSQ 822
Cdd:PTZ00121 1533 AKKAD-EAKKAEEKKKADELKKAEELKKaeekKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 823 LQKlkldavqqlEEHERLHREALERDwvalttyQEQAQQLLELQRSLDYHQENEKELKQTLVENELATRALKKQLDESTL 902
Cdd:PTZ00121 1612 AKK---------AEEAKIKAEELKKA-------EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
330 340 350
....*....|....*....|....*....|....*....
gi 24653383 903 QASKAVMERTKAYNDKLQLEKRSEELRLQLEALKEEHQK 941
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
798-940 |
5.89e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 5.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 798 LQALQQQMQEIEQLHADsvetLQSQLQKLKlDAVQQLEEHERLHREALERDWVALttyqeqaqQLLELQRSLdyhQENEK 877
Cdd:COG4913 612 LAALEAELAELEEELAE----AEERLEALE-AELDALQERREALQRLAEYSWDEI--------DVASAEREI---AELEA 675
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24653383 878 ELKQtLVENELATRALKKQLDESTLQASKAVMERTKAYNDKLQLEKRSEELRLQLEALKEEHQ 940
Cdd:COG4913 676 ELER-LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
94-319 |
1.13e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 94 YFLEEGQPGARADSSTESLsKQLIDAKIEIATLRKtvdvKMELLKDAARaisHHEELQRKADidSQAIIDELQEQIHAYQ 173
Cdd:COG4913 216 YMLEEPDTFEAADALVEHF-DDLERAHEALEDARE----QIELLEPIRE---LAERYAAARE--RLAELEYLRAALRLWF 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 174 maesggqpveniaKTRKMLRLESEVQRLEEELVNIEARNVAARNELEFMLAERLESLTACEG----KIQELAIKNSELVE 249
Cdd:COG4913 286 -------------AQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnggdRLEQLEREIERLER 352
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24653383 250 RL-EKETASAESSNANRDLGAQLADKICELQEAQEKLKER----ERIHEQACRTIQKLMQKLSSQEKEIKKLNQE 319
Cdd:COG4913 353 ELeERERRRARLEALLAALGLPLPASAEEFAALRAEAAALlealEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
669-945 |
1.48e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 669 PEQAISEsesegrtcaTRQDRNRNSERIAQLEEQIAQKDERMLNVQCQMVELDNRYKQEQLRCLD-ITQQLEQLRA-INE 746
Cdd:PRK04863 835 PEAELRQ---------LNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADEtLADRVEEIREqLDE 905
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 747 ALTA----DLHAIGSHEEERMVELQRQLElknQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQL-HADSVETL-- 819
Cdd:PRK04863 906 AEEAkrfvQQHGNALAQLEPIVSVLQSDP---EQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFsYEDAAEMLak 982
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 820 QSQLQ-KLKldavQQLEEHERLHREALErdwvALTTYQEQAQQ----LLELQRSLDYHQENEKELKQtlvenelatralk 894
Cdd:PRK04863 983 NSDLNeKLR----QRLEQAEQERTRARE----QLRQAQAQLAQynqvLASLKSSYDAKRQMLQELKQ------------- 1041
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 24653383 895 kQLDESTLQASKAVMERTKAYNDKLQLE-----KRSEELRLQLEALKEEHQKLLQK 945
Cdd:PRK04863 1042 -ELQDLGVPADSGAEERARARRDELHARlsanrSRRNQLEKQLTFCEAEMDNLTKK 1096
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
191-290 |
1.50e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 191 MLRLE-----SEVQRLEEELVNIEARNVAARNELEFMLAERLESLtacEGKIQELAIKNSELVERLEKETASAESSNANR 265
Cdd:COG0542 401 RVRMEidskpEELDELERRLEQLEIEKEALKKEQDEASFERLAEL---RDELAELEEELEALKARWEAEKELIEEIQELK 477
|
90 100
....*....|....*....|....*
gi 24653383 266 DLGAQLADKICELQEAQEKLKERER 290
Cdd:COG0542 478 EELEQRYGKIPELEKELAELEEELA 502
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
587-1043 |
1.69e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 587 EELHAATSMAPTVENLKAENKALKKELEKRRSSEGQRKerrslplpSQQFDNQSESEAWSEPDRKVSLARIGLDETSNSL 666
Cdd:PTZ00121 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK--------AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD 1486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 667 AAPEQAiSESESEGRTCATRQDRNRNSERIAQLEEqiAQKDERMLNVQcQMVELDNRYKQEQLRCLDITQQLEQLRAINE 746
Cdd:PTZ00121 1487 EAKKKA-EEAKKKADEAKKAAEAKKKADEAKKAEE--AKKADEAKKAE-EAKKADEAKKAEEKKKADELKKAEELKKAEE 1562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 747 ALTADlhAIGSHEEERMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLH-ADSVETLQSQLQK 825
Cdd:PTZ00121 1563 KKKAE--EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKkAEEEKKKVEQLKK 1640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 826 L------KLDAVQQLEEHERLHREALERDWVALTTYQEQAQQLLELQRSLDYHQENEKE-------LKQTLVENELATRA 892
Cdd:PTZ00121 1641 KeaeekkKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEeakkaeeLKKKEAEEKKKAEE 1720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 893 LKKQLDESTLQASKAVMERTKAYNDKLQLEKRSEELRLQLEALKEEHQKLLQKRSNSSDVSQSGYTSEEVAVPMGPPSGQ 972
Cdd:PTZ00121 1721 LKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24653383 973 ATTCKQAAAAVLGQRVNTSSPDLGIESDAGRISSVEVS-NAQRAMLKTVEMKTEGSASPKAKSEESTSPDSK 1043
Cdd:PTZ00121 1801 KDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSkNMQLEEADAFEKHKFNKNNENGEDGNKEADFNK 1872
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
684-947 |
1.87e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 684 ATRQDRNRNSERIAQLEEQIAQKDERMLNVQCQMVELDNRYKQEQLRCLDITQQL--------------------EQLRA 743
Cdd:COG3096 275 RHANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYqaasdhlnlvqtalrqqekiERYQE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 744 INEALTADL---HAIGSHEEERMVELQRQLELKNQQIDQLK--LAHSTLTADSQIT-----EMELQALQ--QQMQEIEQL 811
Cdd:COG3096 355 DLEELTERLeeqEEVVEEAAEQLAEAEARLEAAEEEVDSLKsqLADYQQALDVQQTraiqyQQAVQALEkaRALCGLPDL 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 812 HADSVE----TLQSQLQKL---KLDAVQQL---EEHERLHREALE-----RDWVALTTYQEQAQQLLELQRSLDYHQENE 876
Cdd:COG3096 435 TPENAEdylaAFRAKEQQAteeVLELEQKLsvaDAARRQFEKAYElvckiAGEVERSQAWQTARELLRRYRSQQALAQRL 514
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24653383 877 KELKQTLVENElatRALKKQLDESTLQASKAVMERtKAYNDKLQLEKRSEELRLQLEALKEEHQKLLQKRS 947
Cdd:COG3096 515 QQLRAQLAELE---QRLRQQQNAERLLEEFCQRIG-QQLDAAEELEELLAELEAQLEELEEQAAEAVEQRS 581
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
668-904 |
2.17e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 42.09 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 668 APEQAISESESEGRTCATRQDR-NRNSERIAQLE---EQIAQKDErmLNVQCQMVELDNrYKQEQLRCLDITQQLEQLRA 743
Cdd:PRK10246 662 EEASWLATRQQEAQSWQQRQNElTALQNRIQQLTpllETLPQSDD--LPHSEETVALDN-WRQVHEQCLSLHSQLQTLQQ 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 744 INealtadlhaigSHEEERMVELQRQLE--LKNQQIDQLKLAHSTLTADSQITEMEL--QALQQQMQeieqlhadsvetl 819
Cdd:PRK10246 739 QD-----------VLEAQRLQKAQAQFDtaLQASVFDDQQAFLAALLDEETLTQLEQlkQNLENQRQ------------- 794
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 820 qsQLQKLKLDAVQQLEEHERLHREALERDWVALTTYQEQAQQLLELQRSLDYHQENEKELKQTlVENELATRALKKQLDE 899
Cdd:PRK10246 795 --QAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQD-ADNRQQQQALMQQIAQ 871
|
....*
gi 24653383 900 STLQA 904
Cdd:PRK10246 872 ATQQV 876
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
767-945 |
2.77e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 767 QRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLhadsvetlqSQLQKLKLDAVQQLEEHERLH--REA 844
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRL---------AEYSWDEIDVASAEREIAELEaeLER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 845 LERDWVALTTYQEQAQQLLELQRSLDyHQENEKELKQTLVENELAT-----RALKKQLDESTLQASKAVMERTKAYNDKL 919
Cdd:COG4913 680 LDASSDDLAALEEQLEELEAELEELE-EELDELKGEIGRLEKELEQaeeelDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180
....*....|....*....|....*.
gi 24653383 920 QLEKRSEELRLQLEALKEEHQKLLQK 945
Cdd:COG4913 759 LGDAVERELRENLEERIDALRARLNR 784
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
600-880 |
2.86e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 600 ENLKAENKALKKELEKRRSSEGQRKERrslpLPSQQFDNQSESEAWSEPDRkvSLARIGLDETSNSLAAPEQAISESEse 679
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEAR----IEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIE-- 811
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 680 GRTCATRQDRNRNSERIAQLEEQIAQKDERMLNVQCQMVELDNRYKQEQLRCLDITQQLEQLRAINEALTADLHAIGSHE 759
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 760 EER---MVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHAD--SVETLQSQLQKLkLDAVQQL 834
Cdd:TIGR02169 892 DELeaqLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelSLEDVQAELQRV-EEEIRAL 970
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 24653383 835 EEHERLHREALERDWVALTTYQEQAQQLLELQRSLDYHQENEKELK 880
Cdd:TIGR02169 971 EPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
693-945 |
4.72e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 4.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 693 SERIAQLEEQIAQKDERMLNVQCQMVELdnRYKQEQLRCL----------DITQQLEQLRAINEALTADLHAIGSHEE-- 760
Cdd:COG3096 842 RQRRSELERELAQHRAQEQQLRQQLDQL--KEQLQLLNKLlpqanlladeTLADRLEELREELDAAQEAQAFIQQHGKal 919
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 761 ERMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQL-HADSVETL---QSQLQKLKldavQQLEE 836
Cdd:COG3096 920 AQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFsYEDAVGLLgenSDLNEKLR----ARLEQ 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 837 HERLHREALErdwvALTTYQEQAQQLLELQRSL--------DYHQENEKELKQTLV----ENELATRALKKQLDEstlQA 904
Cdd:COG3096 996 AEEARREARE----QLRQAQAQYSQYNQVLASLkssrdakqQTLQELEQELEELGVqadaEAEERARIRRDELHE---EL 1068
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 24653383 905 SKAVMERTkayndklQLEKRSEELRLQLEALKEEHQKLLQK 945
Cdd:COG3096 1069 SQNRSRRS-------QLEKQLTRCEAEMDSLQKRLRKAERD 1102
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
760-993 |
5.78e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 5.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 760 EERMVELQRQLELKNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHADSVETLQSQLQKLK-----LDAVQQL 834
Cdd:COG3883 29 QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYrsggsVSYLDVL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 835 EEHERLHrEALERdWVALTTYQEQAQQLLELQRSLdyhQENEKELKQTLVENELATRALKKQLDESTLQASKAVMERTKA 914
Cdd:COG3883 109 LGSESFS-DFLDR-LSALSKIADADADLLEELKAD---KAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24653383 915 YNDKLQLEKRSEELRLQLEALKEEHQKLLQKRSNSSDVSQSGYTSEEVAVPMGPPSGQATTCKQAAAAVLGQRVNTSSP 993
Cdd:COG3883 184 LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAAGSA 262
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
660-942 |
7.51e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.20 E-value: 7.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 660 DETSNSLAAPEQAISESESEGRT---CATRQDRNRNSERIAQLEEQIaqkdERMLNVQCQMVEL--DNRYKQEQLRcldi 734
Cdd:PRK04778 75 EIVTNSLPDIEEQLFEAEELNDKfrfRKAKHEINEIESLLDLIEEDI----EQILEELQELLESeeKNREEVEQLK---- 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 735 tQQLEQLRAineALTADLHAIGSHE---EERMVELQRQLelknQQIDQLKLAHSTLTADSQI--TEMELQALQQQMQEIE 809
Cdd:PRK04778 147 -DLYRELRK---SLLANRFSFGPALdelEKQLENLEEEF----SQFVELTESGDYVEAREILdqLEEELAALEQIMEEIP 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 810 QLHADSVETLQSQLQKLK------------------LDAVQQLEEH--------ERLHREALErdwVALTTYQEQAQQLL 863
Cdd:PRK04778 219 ELLKELQTELPDQLQELKagyrelveegyhldhldiEKEIQDLKEQidenlallEELDLDEAE---EKNEEIQERIDQLY 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 864 E------------------LQRSLDYHQENEKELKQ---------TLVENELAT-RALKKQLDE---STLQASKAVMERT 912
Cdd:PRK04778 296 DilerevkarkyveknsdtLPDFLEHAKEQNKELKEeidrvkqsyTLNESELESvRQLEKQLESlekQYDEITERIAEQE 375
|
330 340 350
....*....|....*....|....*....|
gi 24653383 913 KAYNdklQLEKRSEELRLQLEALKEEHQKL 942
Cdd:PRK04778 376 IAYS---ELQEELEEILKQLEEIEKEQEKL 402
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
194-407 |
9.42e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 194 LESEVQRLEEELVNIEARNVAARNELE------FMLAERLESLTACEGKIQELAIKNSELVERLEKETASAESSNAN-RD 266
Cdd:TIGR04523 171 LENELNLLEKEKLNIQKNIDKIKNKLLklelllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEiSN 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24653383 267 LGAQLADKICELQEAQEKLKERERIHEQACRTIQKLMQKLSSQEKEIKKLNQENEQSANKEndcAKTVISPSSSGRSMSD 346
Cdd:TIGR04523 251 TQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKE---LKSELKNQEKKLEEIQ 327
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24653383 347 NEASSQEMstnlrvryelKINEQEEKIKQLQTEVKKKTANLQNLvNKELWEKNREVERLTK 407
Cdd:TIGR04523 328 NQISQNNK----------IISQLNEQISQLKKELTNSESENSEK-QRELEEKQNEIEKLKK 377
|
|
| |
