NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|24583270|ref|NP_723535|]
View 

ovaries absent, isoform B [Drosophila melanogaster]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Nrf1_DNA-bind super family cl11131
NLS-binding and DNA-binding and dimerization domains of Nrf1; In Drosophila, the erect wing ...
15-105 3.76e-10

NLS-binding and DNA-binding and dimerization domains of Nrf1; In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human. Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Swiss-Prot:Q8C4C0, there is also an NLS domain at 88-116, and a DNA binding and dimerization domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity.


The actual alignment was detected with superfamily member pfam10491:

Pssm-ID: 463112  Cd Length: 213  Bit Score: 60.13  E-value: 3.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583270    15 LPLLFANGYPTSLEKITESQLENFIPFMVQCSLGHINLPKKIDCSEPEWWPESAPFEIPLKKPKAFVGN----WMEKMKE 90
Cdd:pfam10491 115 LPPLVIDGIPTPVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCRPVWWPKDVPWANVRSDVRTEEQKqrvsWTQALRT 194
                          90
                  ....*....|....*
gi 24583270    91 IVVICYQFHKSLFLL 105
Cdd:pfam10491 195 IVKNCYKHHGREDLL 209
 
Name Accession Description Interval E-value
Nrf1_DNA-bind pfam10491
NLS-binding and DNA-binding and dimerization domains of Nrf1; In Drosophila, the erect wing ...
15-105 3.76e-10

NLS-binding and DNA-binding and dimerization domains of Nrf1; In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human. Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Swiss-Prot:Q8C4C0, there is also an NLS domain at 88-116, and a DNA binding and dimerization domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity.


Pssm-ID: 463112  Cd Length: 213  Bit Score: 60.13  E-value: 3.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583270    15 LPLLFANGYPTSLEKITESQLENFIPFMVQCSLGHINLPKKIDCSEPEWWPESAPFEIPLKKPKAFVGN----WMEKMKE 90
Cdd:pfam10491 115 LPPLVIDGIPTPVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCRPVWWPKDVPWANVRSDVRTEEQKqrvsWTQALRT 194
                          90
                  ....*....|....*
gi 24583270    91 IVVICYQFHKSLFLL 105
Cdd:pfam10491 195 IVKNCYKHHGREDLL 209
 
Name Accession Description Interval E-value
Nrf1_DNA-bind pfam10491
NLS-binding and DNA-binding and dimerization domains of Nrf1; In Drosophila, the erect wing ...
15-105 3.76e-10

NLS-binding and DNA-binding and dimerization domains of Nrf1; In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human. Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Swiss-Prot:Q8C4C0, there is also an NLS domain at 88-116, and a DNA binding and dimerization domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity.


Pssm-ID: 463112  Cd Length: 213  Bit Score: 60.13  E-value: 3.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24583270    15 LPLLFANGYPTSLEKITESQLENFIPFMVQCSLGHINLPKKIDCSEPEWWPESAPFEIPLKKPKAFVGN----WMEKMKE 90
Cdd:pfam10491 115 LPPLVIDGIPTPVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCRPVWWPKDVPWANVRSDVRTEEQKqrvsWTQALRT 194
                          90
                  ....*....|....*
gi 24583270    91 IVVICYQFHKSLFLL 105
Cdd:pfam10491 195 IVKNCYKHHGREDLL 209
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH