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Conserved domains on  [gi|442625294|ref|NP_722746|]
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Odorant-binding protein 22a, isoform C [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PBP_GOBP super family cl11600
pheromone binding protein/general-odorant binding protein (PBP/GOBP) family proteins; ...
25-106 1.93e-03

pheromone binding protein/general-odorant binding protein (PBP/GOBP) family proteins; Arthropod Odorant Binding Proteins (OBPs) extract odorants at the air-lymph interface and carry them to the olfactory receptors. In insects, OBPs are located in the antennal sensillary lymph. OBPs that bind insects' specific pheromones are called Pheromone Binding Proteins (PBPs), and OBPs that bind general odorant molecules are sometimes called General OBPs (GOPBs). The family includes PBPs and GOBPs mainly from insects, which are distinct from the vertebrate OBPs. PBPs are male-specific and associate with pheromone-sensitive neurons and GOBPs. GOBPs share a high level of sequence similarity with the PBPs. They may carry odorants rather than pheromones.


The actual alignment was detected with superfamily member pfam01395:

Pssm-ID: 472229  Cd Length: 109  Bit Score: 35.15  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625294   25 KIVSECAKENNVHRkkalDLLMSYRLKK--KTHNVMCFINCIFERTNILQKV-----------------KEKVVKENHNC 85
Cdd:pfam01395  12 QARKECAKELGVSD----EDVEKLKKGEfpDDDETKCYIRCVLKKLGLMDDDgglnkdvlleqlepvldDEKAKEIIEKC 87
                          90       100
                  ....*....|....*....|.
gi 442625294   86 DSIKDADKCAESFQKFQCLVK 106
Cdd:pfam01395  88 QAGAVKDPCETAYKLFKCFYK 108
 
Name Accession Description Interval E-value
PBP_GOBP pfam01395
PBP/GOBP family; The olfactory receptors of terrestrial animals exist in an aqueous ...
25-106 1.93e-03

PBP/GOBP family; The olfactory receptors of terrestrial animals exist in an aqueous environment, yet detect odorants that are primarily hydrophobic. The aqueous solubility of hydrophobic odorants is thought to be greatly enhanced via odorant binding proteins which exist in the extracellular fluid surrounding the odorant receptors. This family is composed of pheromone binding proteins (PBP), which are male-specific and associate with pheromone-sensitive neurons and general-odorant binding proteins (GOBP).


Pssm-ID: 460193  Cd Length: 109  Bit Score: 35.15  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625294   25 KIVSECAKENNVHRkkalDLLMSYRLKK--KTHNVMCFINCIFERTNILQKV-----------------KEKVVKENHNC 85
Cdd:pfam01395  12 QARKECAKELGVSD----EDVEKLKKGEfpDDDETKCYIRCVLKKLGLMDDDgglnkdvlleqlepvldDEKAKEIIEKC 87
                          90       100
                  ....*....|....*....|.
gi 442625294   86 DSIKDADKCAESFQKFQCLVK 106
Cdd:pfam01395  88 QAGAVKDPCETAYKLFKCFYK 108
 
Name Accession Description Interval E-value
PBP_GOBP pfam01395
PBP/GOBP family; The olfactory receptors of terrestrial animals exist in an aqueous ...
25-106 1.93e-03

PBP/GOBP family; The olfactory receptors of terrestrial animals exist in an aqueous environment, yet detect odorants that are primarily hydrophobic. The aqueous solubility of hydrophobic odorants is thought to be greatly enhanced via odorant binding proteins which exist in the extracellular fluid surrounding the odorant receptors. This family is composed of pheromone binding proteins (PBP), which are male-specific and associate with pheromone-sensitive neurons and general-odorant binding proteins (GOBP).


Pssm-ID: 460193  Cd Length: 109  Bit Score: 35.15  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442625294   25 KIVSECAKENNVHRkkalDLLMSYRLKK--KTHNVMCFINCIFERTNILQKV-----------------KEKVVKENHNC 85
Cdd:pfam01395  12 QARKECAKELGVSD----EDVEKLKKGEfpDDDETKCYIRCVLKKLGLMDDDgglnkdvlleqlepvldDEKAKEIIEKC 87
                          90       100
                  ....*....|....*....|.
gi 442625294   86 DSIKDADKCAESFQKFQCLVK 106
Cdd:pfam01395  88 QAGAVKDPCETAYKLFKCFYK 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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