|
Name |
Accession |
Description |
Interval |
E-value |
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
67-654 |
6.11e-125 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 384.01 E-value: 6.11e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 67 TNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF--GAVCESGEILVNNSPRDMRVFRKMSRYIMQTDVLD 144
Cdd:TIGR00955 32 CRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRspKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 145 SQFTVLEMMILAANLKLGKELNLKQKLEVIDEILGMLRLKDTLNTMAQK------LSGGERKRLCIALELVNNPPVIFLD 218
Cdd:TIGR00955 112 PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCD 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 219 EPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAEGQCVYQGKGSNIVPFLKNFGLCCPITYNP 298
Cdd:TIGR00955 192 EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNP 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 299 ADFIIEVACLEYgGSYHEPMVEAvgNGKVARWSPPAVEGETTTTKTDTTSGASSFYERDQFDEEIspkllEAKCSWWLQY 378
Cdd:TIGR00955 272 ADFYVQVLAVIP-GSENESRERI--EKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGI-----GYNASWWTQF 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 379 KLLLVRMLIQMWRDKSYIKLKFYMNIVLALLVGSLYFGMGTSASKALFNFGFMFTIVIAYLYLPMMPVLLYFPTEINLLK 458
Cdd:TIGR00955 344 YALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFL 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 459 REYNNQWYRLSSYYAAMVTSKLPSMFILAVIYLSIVYLMSSQPLEWFRFamLFTIAFVTALT--SDSFGLLISSRLSLVN 536
Cdd:TIGR00955 424 RETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF--LTFLFLVTLVAnvATSFGYLISCAFSSTS 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 537 -AMFMGPVLAVPLILLSIYGIGYGGGTYISPLMRFlmhLSYLRHSMEGLVASLYDYGR--ADTICEDTEIFCSFKksKVL 613
Cdd:TIGR00955 502 mALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDniECTSANTTGPCPSSG--EVI 576
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 24580545 614 LAFLGFENMHYLWSLSCLMSFYLLFTVAAYFMIRLRLKHSE 654
Cdd:TIGR00955 577 LETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
51-276 |
2.48e-69 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 224.35 E-value: 2.48e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 51 AVNLQFSELCYVVPDQTnASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCE-SGEILVNNSPRDMRV 129
Cdd:cd03213 1 GVTLSFRNLTVTVKSSP-SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGvSGEVLINGRPLDKRS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 130 FRKMSRYIMQTDVLDSQFTVLEMMILAANLKlgkelnlkqklevideilgmlrlkdtlntmaqKLSGGERKRLCIALELV 209
Cdd:cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKLR--------------------------------GLSGGERKRVSIALELV 127
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 210 NNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
59-530 |
2.94e-60 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 219.59 E-value: 2.94e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 59 LCYVVPDQtnaSKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG--FGAVCESGEILVNNSPRDmRVFRKMSRY 136
Cdd:TIGR00956 765 LTYEVKIK---KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAErvTTGVITGGDRLVNGRPLD-SSFQRSIGY 840
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 137 IMQTDVLDSQFTVLEMMILAANLKLGKELNLKQKLEVIDEI---LGMLRLKDTL-NTMAQKLSGGERKRLCIALELVNNP 212
Cdd:TIGR00956 841 VQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEViklLEMESYADAVvGVPGEGLNVEQRKRLTIGVELVAKP 920
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 213 P-VIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAEG-QCVYQGK-GSN----IVPFL 285
Cdd:TIGR00956 921 KlLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGgQTVYFGDlGENshtiINYFE 1000
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 286 KNFGLCCPITYNPADFIIEVACLEYGGS----YHE-----PMVEAVGNgKVARWSPPavegettttktdtTSGASSFYER 356
Cdd:TIGR00956 1001 KHGAPKCPEDANPAEWMLEVIGAAPGAHanqdYHEvwrnsSEYQAVKN-ELDRLEAE-------------LSKAEDDNDP 1066
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 357 DqfdeeispKLLEAKCSWWLQYKLLLVRMLIQMWRDKSYIKLKFYMNIVLALLVGSLYFGMGTSA---SKALFNFgFMFT 433
Cdd:TIGR00956 1067 D--------ALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLqglQNQMFAV-FMAT 1137
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 434 IVIAYLYLPMMPvllYFPTEINLLK-REYNNQWYRLSSYYAAMVTSKLPSMFILAVIYLSIVYLM---------SSQPLE 503
Cdd:TIGR00956 1138 VLFNPLIQQYLP---PFVAQRDLYEvRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPvgfywnaskTGQVHE 1214
|
490 500
....*....|....*....|....*..
gi 24580545 504 WFRFAMLFTIAFVtaLTSDSFGLLISS 530
Cdd:TIGR00956 1215 RGVLFWLLSTMFF--LYFSTLGQMVIS 1239
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
65-526 |
7.70e-60 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 212.82 E-value: 7.70e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 65 DQTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG-FGAVCESGEILVNNSPRDMRVFRKMSrYIMQTDVL 143
Cdd:PLN03211 73 DETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGrIQGNNFTGTILANNRKPTKQILKRTG-FVTQDDIL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 144 DSQFTVLEMMILAANLKLGKELNLKQKLEVIDEI---LGMLRLKDTL--NTMAQKLSGGERKRLCIALELVNNPPVIFLD 218
Cdd:PLN03211 152 YPHLTVRETLVFCSLLRLPKSLTKQEKILVAESViseLGLTKCENTIigNSFIRGISGGERKRVSIAHEMLINPSLLILD 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 219 EPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAEGQCVYQGKGSNIVPFLKNFGLCCPITYNP 298
Cdd:PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNP 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 299 ADFIIEVA---CLEYGGSYHE-PMVE----AVGNGKVARWSPPAVEGETTTTKTDTTSGASSFYERDQFDEeispkllEA 370
Cdd:PLN03211 312 ADFLLDLAngvCQTDGVSEREkPNVKqslvASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDR-------IS 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 371 KCSWWLQYKLLLVRMLIQMwRDKSYIKLKFYMNIVLALLVGSLYFgmGTSASKALFNFGFMFTIVIAYLYLPMMPVLLYF 450
Cdd:PLN03211 385 ISTWFNQFSILLQRSLKER-KHESFNTLRVFQVIAAALLAGLMWW--HSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVF 461
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 451 PTEINLLKREYNNQWYRLSSYYAAMVTSKLPSMFILAVIYLSIVYLMSSQPLEWFRFAMLFTIAFVTALTSDSFGL 526
Cdd:PLN03211 462 PQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGL 537
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
65-276 |
6.00e-58 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 195.18 E-value: 6.00e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 65 DQTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF--GAVCESGEILVNNSPRDMRVFRKMSRYIMQTDV 142
Cdd:cd03234 12 KAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRveGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 143 LDSQFTVLEMMILAANLKLGKELNLKQKlEVIDEILGMLRLKDTL--NTMAQKLSGGERKRLCIALELVNNPPVIFLDEP 220
Cdd:cd03234 92 LLPGLTVRETLTYTAILRLPRKSSDAIR-KKRVEDVLLRDLALTRigGNLVKGISGGERRRVSIAVQLLWDPKVLILDEP 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 221 TTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03234 171 TSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
75-530 |
6.79e-52 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 194.68 E-value: 6.79e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG--FGAVCEsGEILVNNSPRDMRVFRKMSRYIMQTDVLDSQFTVLEM 152
Cdd:PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGrkTGGYIE-GDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 153 MILAANLKLGKELNLKQKLEVIDEILGMLRLKDTLNTMA-----QKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:PLN03140 974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVglpgvTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 228 SSSQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAE-GQCVYQGK-GSN---IVPFLKNFGLCCPIT--YNPAD 300
Cdd:PLN03140 1054 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRgGQVIYSGPlGRNshkIIEYFEAIPGVPKIKekYNPAT 1133
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 301 FIIEVACL--------EYGGSYHEPMVEAVGNGKVARWSPPAvegettttktdttSGASSFYERDQFDEeispklleakc 372
Cdd:PLN03140 1134 WMLEVSSLaaevklgiDFAEHYKSSSLYQRNKALVKELSTPP-------------PGASDLYFATQYSQ----------- 1189
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 373 SWWLQYKLLLVRMLIQMWRDKSYIKLKFYMNIVLALLVGSLYFGMGT---SASKALFNFGFMFTIVIAYLYLPMMPVLLY 449
Cdd:PLN03140 1190 STWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTkrsNANDLTMVIGAMYAAVLFVGINNCSTVQPM 1269
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 450 FPTEINLLKREYNNQWYRLSSYYAAMVTSKLPSMFILAVIYLSIVYLMSSqpLEW--FRFAMLFTIAFVTALTSDSFGLL 527
Cdd:PLN03140 1270 VAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVA--FEWtaAKFFWFYFISFFSFLYFTYYGMM 1347
|
...
gi 24580545 528 ISS 530
Cdd:PLN03140 1348 TVS 1350
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
54-276 |
9.71e-50 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 172.04 E-value: 9.71e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVPDqtnASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG---FGAVceSGEILVNNSPRDMRvF 130
Cdd:cd03232 4 LTWKNLNYTVPV---KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGrktAGVI--TGEILINGRPLDKN-F 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 131 RKMSRYIMQTDVLDSQFTVLEMMILAANLKlgkelnlkqklevideilgmlrlkdtlntmaqKLSGGERKRLCIALELVN 210
Cdd:cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALLR--------------------------------GLSVEQRKRLTIGVELAA 125
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 211 NPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAE-GQCVYQG 276
Cdd:cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRgGKTVYFG 192
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
42-552 |
6.93e-40 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 157.96 E-value: 6.93e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 42 GLKYLPSWPAVNLQFSELCYVVPDQTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLA----GFgAVCESGE 117
Cdd:TIGR00956 43 DSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAsntdGF-HIGVEGV 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 118 ILVNN-SPRDM-RVFRKMSRYIMQTDVLDSQFTVLEMMILAANLK--------LGKELNLKQKLEVIDEILGMLRLKDTL 187
Cdd:TIGR00956 122 ITYDGiTPEEIkKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKtpqnrpdgVSREEYAKHIADVYMATYGLSHTRNTK 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 188 --NTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAA-GGRTVICSIHTPSAKIFEMLDAV 264
Cdd:TIGR00956 202 vgNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANiLDTTPLVAIYQCSQDAYELFDKV 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 265 YVLAEGQCVYQGKGSNIVPFLKNFGLCCPITYNPADFIIEVAcleyggSYHEPMVEAVGNGKVAR--------WSPPAVE 336
Cdd:TIGR00956 282 IVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLT------SPAERQIKPGYEKKVPRtpqefetyWRNSPEY 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 337 GETTTTKTDTTSGASSFYERDQFDE----EISPKLLEAK---CSWWLQYKLLLVRMLIQMWRDKSYIKLKFYMNIVLALL 409
Cdd:TIGR00956 356 AQLMKEIDEYLDRCSESDTKEAYREshvaKQSKRTRPSSpytVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALI 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 410 VGSLYFGMGTSASKALFNFGFMFTIVIAYLYLPMMPVLLYFPTEINLLK-REYnnQWYRLSSYYAAMVTSKLPSMFILAV 488
Cdd:TIGR00956 436 LSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKhRKY--ALYHPSADAIASIISEIPFKIIESV 513
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24580545 489 IYLSIVYLMSSQPLEWFRFAMLFTIAFVTALT-SDSFGLLISSRLSLVNAMFMGPVLAVPLILLS 552
Cdd:TIGR00956 514 VFNIILYFMVNFRRTAGRFFFYLLILFICTLAmSHLFRSIGAVTKTLSEAMTPAAILLLALSIYT 578
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
71-276 |
8.26e-39 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 143.28 E-value: 8.26e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVN--NSPRDMRVFRKMSRYIMQTDVLDSQFT 148
Cdd:COG1131 11 GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGL-LRPTSGEVRVLgeDVARDPAEVRRRIGYVPQEPALYPDLT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 149 VLEMMILAANLKlgkELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLS 228
Cdd:COG1131 90 VRENLRFFARLY---GLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDPEA 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 24580545 229 SSQCIALLKVLAAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQG 276
Cdd:COG1131 167 RRELWELLRELAAEGKTVLLSTHYLEE-AERLCDRVAIIDKGRIVADG 213
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
71-276 |
3.82e-37 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 138.84 E-value: 3.82e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSP---RDMRVFRKMSrYIMQTDVLDSQF 147
Cdd:COG4555 12 GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGL-LKPDSGSILIDGEDvrkEPREARRQIG-VLPDERGLYDRL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEMMILAANLKlgkELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:COG4555 90 TVRENIRYFAELY---GLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGLDVM 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24580545 228 SSSQCIALLKVLAAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQG 276
Cdd:COG4555 167 ARRLLREILRALKKEGKTVLFSSHIMQ-EVEALCDRVVILHKGKVVAQG 214
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
55-271 |
4.09e-37 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 137.60 E-value: 4.09e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 55 QFSELCYVVPDQTnasktKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP---RDMRVFR 131
Cdd:cd03225 1 ELKNLSFSYPDGA-----RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-TSGEVLVDGKDltkLSLKELR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 132 KMSRYIMQtDVlDSQF---TVL-EMMILAANLKLGKElnlkQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALE 207
Cdd:cd03225 75 RKVGLVFQ-NP-DDQFfgpTVEeEVAFGLENLGLPEE----EIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGV 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24580545 208 LVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQ 271
Cdd:cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
54-277 |
9.74e-36 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 134.38 E-value: 9.74e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVPDQTNAsktktiLRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSPRDMRVFRKM 133
Cdd:COG1122 1 IELENLSFSYPGGTPA------LDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGL-LKPTSGEVLVDGKDITKKNLREL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 134 SR---YIMQtDVlDSQF---TVLEMMILA-ANLKLGKElnlkQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIAL 206
Cdd:COG1122 74 RRkvgLVFQ-NP-DDQLfapTVEEDVAFGpENLGLPRE----EIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAG 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24580545 207 ELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQGK 277
Cdd:COG1122 148 VLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDL-VAELADRVIVLDDGRIVADGT 217
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
54-271 |
3.32e-35 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 132.61 E-value: 3.32e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVPdqtNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNN------SPRDM 127
Cdd:cd03255 1 IELKNLSKTYG---GGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-TSGEVRVDGtdisklSEKEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 128 RVFR--KMSrYIMQTDVLDSQFTVLEmmilaaNLKLGKELN---LKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRL 202
Cdd:cd03255 77 AAFRrrHIG-FVFQSFNLLPDLTALE------NVELPLLLAgvpKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 203 CIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAG-GRTVICSIHTPSakIFEMLDAVYVLAEGQ 271
Cdd:cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEaGTTIVVVTHDPE--LAEYADRIIELRDGK 217
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
70-276 |
9.63e-34 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 128.39 E-value: 9.63e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 70 SKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCeSGEILVNNSP--RDMRVFRKMSRYIMQTDVLDSQF 147
Cdd:cd03263 12 KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT-SGTAYINGYSirTDRKAARQSLGYCPQFDALFDEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEMMILAANLKlGkeLNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:cd03263 91 TVREHLRFYARLK-G--LPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 228 SSSQ-CIALLKVlaAGGRTVICSIHTpsakifeMLDA------VYVLAEGQCVYQG 276
Cdd:cd03263 168 SRRAiWDLILEV--RKGRSIILTTHS-------MDEAealcdrIAIMSDGKLRCIG 214
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
73-274 |
1.29e-33 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 129.05 E-value: 1.29e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDmRVFRKMSrYIMQTDVLDSQF--TVL 150
Cdd:COG1121 19 RPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPP-TSGTVRLFGKPPR-RARRRIG-YVPQRAEVDWDFpiTVR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 151 E--MMILAANLKLGKELNLKQKlEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLS 228
Cdd:COG1121 96 DvvLMGRYGRRGLFRRPSRADR-EAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAAT 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24580545 229 SSQCIALLKVLAAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQCVY 274
Cdd:COG1121 175 EEALYELLRELRREGKTILVVTHDLGA-VREYFDRVLLLNRGLVAH 219
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
76-222 |
5.55e-33 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 123.91 E-value: 5.55e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 76 LRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSP---RDMRVFRKMSRYIMQTDVLDSQFTVLEM 152
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGL-LSPTEGTILLDGQDltdDERKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24580545 153 MILAANLKLGKELNLKQKLEVIDEILGMLRLKDT-LNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTT 222
Cdd:pfam00005 80 LRLGLLLKGLSKREKDARAEEALEKLGLGDLADRpVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC2_membrane |
pfam01061 |
ABC-2 type transporter; |
381-587 |
2.09e-32 |
|
ABC-2 type transporter;
Pssm-ID: 426023 [Multi-domain] Cd Length: 204 Bit Score: 124.31 E-value: 2.09e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 381 LLVRMLIQMWRDKSYIKLKFYMNIVLALLVGSLYFGMGTSASkALFNFGFMFTIVIAYLYLPMMPVLLYFPTEINLLKRE 460
Cdd:pfam01061 1 LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQG-GLNRPGLLFFSILFNAFSALSGISPVFEKERGVLYRE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 461 YNNQWYRLSSYYAAMVTSKLPSMFILAVIYLSIVYLMSSQPLEWFRFAMLFTIAFVTALTSDSFGLLISSRL-SLVNAMF 539
Cdd:pfam01061 80 LASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGLPPSAGRFFLFLLVLLLTALAASSLGLFISALApSFEDASQ 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 24580545 540 MGPVLAVPLILLSiygIGYGGGTYISPLMRFLMHLSYLRHSMEGLVAS 587
Cdd:pfam01061 160 LGPLVLLPLLLLS---GFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN 204
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
74-273 |
2.72e-32 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 124.77 E-value: 2.72e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 74 TILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNN------SPRDMRVFRkmsR----YIMQTDVL 143
Cdd:COG1136 22 TALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGL-DRPTSGEVLIDGqdisslSERELARLR---RrhigFVFQFFNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 144 DSQFTVLEMMILAANLklgKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTG 223
Cdd:COG1136 98 LPELTALENVALPLLL---AGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRPKLILADEPTGN 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 24580545 224 LDDLSSSQCIALLKVLAA-GGRTVICSIHtpSAKIFEMLDAVYVLAEGQCV 273
Cdd:COG1136 175 LDSKTGEEVLELLRELNReLGTTIVMVTH--DPELAARADRVIRLRDGRIV 223
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
73-276 |
2.41e-30 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 119.76 E-value: 2.41e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAvCESGEILVNN------SPRDMRvfRKMSrYIMQTDVLDSQ 146
Cdd:COG1120 14 RPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLK-PSSGEVLLDGrdlaslSRRELA--RRIA-YVPQEPPAPFG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 147 FTVLEMMIL--AANLKLGKELNlKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGL 224
Cdd:COG1120 90 LTVRELVALgrYPHLGLFGRPS-AEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTSHL 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 225 D-----DLsssqcIALLKVLAAG-GRTVICSIHTPS--AKIFemlDAVYVLAEGQCVYQG 276
Cdd:COG1120 169 DlahqlEV-----LELLRRLARErGRTVVMVLHDLNlaARYA---DRLVLLKDGRIVAQG 220
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
74-276 |
3.32e-30 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 118.76 E-value: 3.32e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 74 TILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILV------NNSPRDMRVFRKMSRYIMQtD---VLD 144
Cdd:cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-TSGSIIFdgkdllKLSRRLRKIRRKEIQMVFQ-DpmsSLN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 145 SQFTVLEMmILAANLKLGKELNLKQKLEVIDEILGMLRL-KDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTG 223
Cdd:cd03257 97 PRMTIGEQ-IAEPLRIHGKLSKKEARKEAVLLLLVGVGLpEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 24580545 224 LDDLSSSQCIALLKVLAAG-GRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03257 176 LDVSVQAQILDLLKKLQEElGLTLLFITHDLGV-VAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
80-276 |
3.64e-30 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 118.06 E-value: 3.64e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 80 NGMFhsheltAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP--RDMRVFRKMSRYIMQTDVLDSQFTVLEMMILAA 157
Cdd:cd03264 25 PGMY------GLLGPNGAGKTTLMRILATLTPP-SSGTIRIDGQDvlKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 158 NLKlgkELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDdlsSSQCIA--- 234
Cdd:cd03264 98 WLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD---PEERIRfrn 171
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 24580545 235 LLKVLAAgGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03264 172 LLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
71-271 |
7.29e-30 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 115.96 E-value: 7.29e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP--RDMRVFRKMSRYIMQTDVLDSQFT 148
Cdd:cd03230 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDikKEPEEVKRRIGYLPEEPSLYENLT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 149 VLEMMilaanlklgkelnlkqklevideilgmlrlkdtlntmaqKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLS 228
Cdd:cd03230 90 VRENL---------------------------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPES 130
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24580545 229 SSQCIALLKVLAAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQ 271
Cdd:cd03230 131 RREFWELLRELKKEGKTILLSSHILEE-AERLCDRVAILNNGR 172
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
73-251 |
2.36e-29 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 115.71 E-value: 2.36e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCeSGEILVNNSPRDMrvFRKMSRYIMQTDVLDSQF--TVL 150
Cdd:cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT-SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFpiSVR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 151 E--MMILAANLKLGKELNLKQKlEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLS 228
Cdd:cd03235 89 DvvLMGLYGHKGLFRRLSKADK-AKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167
|
170 180
....*....|....*....|...
gi 24580545 229 SSQCIALLKVLAAGGRTVICSIH 251
Cdd:cd03235 168 QEDIYELLRELRREGMTILVVTH 190
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
71-271 |
3.59e-29 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 113.49 E-value: 3.59e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCeSGEILVNNSP---RDMRVFRKMSRYIMQtdvldsqf 147
Cdd:cd00267 10 GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDiakLPLEELRRRIGYVPQ-------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 tvlemmilaanlklgkelnlkqklevideilgmlrlkdtlntmaqkLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:cd00267 81 ----------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 24580545 228 SSSQCIALLKVLAAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQ 271
Cdd:cd00267 115 SRERLLELLRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDGK 157
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
73-253 |
4.30e-29 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 114.88 E-value: 4.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP---RDMRVFRKMSrYIMQTDVLDSQFTV 149
Cdd:COG4133 15 RLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPP-SAGEVLWNGEPirdAREDYRRRLA-YLGHADGLKPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 150 LEMMILAANLKlgkelNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSS 229
Cdd:COG4133 93 RENLRFWAALY-----GLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGV 167
|
170 180
....*....|....*....|....
gi 24580545 230 SQCIALLKVLAAGGRTVICSIHTP 253
Cdd:COG4133 168 ALLAELIAAHLARGGAVLLTTHQP 191
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
87-276 |
4.92e-29 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 115.61 E-value: 4.92e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFgAVCESGEIL-----VNNSPRDMRVFRKMSRyIMQTDVLDSQFTVLEMMILAANLKL 161
Cdd:cd03219 27 EIHGLIGPNGAGKTTLFNLISGF-LRPTSGSVLfdgedITGLPPHEIARLGIGR-TFQIPRLFPELTVLENVMVAAQART 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 162 GKELNL-------KQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIA 234
Cdd:cd03219 105 GSGLLLararreeREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 24580545 235 LLKVLAAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03219 185 LIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQGRVIAEG 225
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
73-271 |
7.18e-29 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 114.53 E-value: 7.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCEsGEILVNNSPR---DMRVFRKMSRYIMQTDVLdsqF-- 147
Cdd:COG4619 13 KPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTS-GEIYLDGKPLsamPPPEWRRQVAYVPQEPAL---Wgg 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEMMILAANLKlgkelNLKQKLEVIDEILGMLRL-KDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDD 226
Cdd:COG4619 89 TVRDNLPFPFQLR-----ERKFDRERALELLERLGLpPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSALDP 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 24580545 227 lSSSQCI--ALLKVLAAGGRTVICSIHTPsAKIFEMLDAVYVLAEGQ 271
Cdd:COG4619 164 -ENTRRVeeLLREYLAEEGRAVLWVSHDP-EQIERVADRVLTLEAGR 208
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
87-277 |
1.08e-28 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 121.03 E-value: 1.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNN------SPRDMRvfRKMSrYIMQ-TDVLDSqfTVLEmmilaaNL 159
Cdd:COG4987 362 ERVAIVGPSGSGKSTLLALLLRF-LDPQSGSITLGGvdlrdlDEDDLR--RRIA-VVPQrPHLFDT--TLRE------NL 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 160 KLGKElnlkqklEVID-EILGMLR----------LKDTLNTM----AQKLSGGERKRLCIALELVNNPPVIFLDEPTTGL 224
Cdd:COG4987 430 RLARP-------DATDeELWAALErvglgdwlaaLPDGLDTWlgegGRRLSGGERRRLALARALLRDAPILLLDEPTEGL 502
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 24580545 225 DDLSSSQCIALLKVLAAgGRTVICSIHTPSAkiFEMLDAVYVLAEGQCVYQGK 277
Cdd:COG4987 503 DAATEQALLADLLEALA-GRTVLLITHRLAG--LERMDRILVLEDGRIVEQGT 552
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
72-288 |
1.23e-28 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 114.52 E-value: 1.23e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 72 TKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNN------SPRDMRVFRKMSRYIMQTDVLDS 145
Cdd:cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-DSGEVLIDGedisglSEAELYRLRRRMGMLFQSGALFD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 146 QFTVLEmmilaaNLKLGKELNLKQKLEVIDEI----LGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPT 221
Cdd:cd03261 91 SLTVFE------NVAFPLREHTRLSEEEIREIvlekLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24580545 222 TGLDDLSSSQCIALLKVL-AAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQGKGSNIV----PFLKNF 288
Cdd:cd03261 165 AGLDPIASGVIDDLIRSLkKELGLTSIMVTHDLDT-AFAIADRIAVLYDGKIVAEGTPEELRasddPLVRQF 235
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
71-251 |
5.36e-28 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 111.58 E-value: 5.36e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCeSGEILVNNSPRDMRVFRKMSRYIMQTdvLDSQF--- 147
Cdd:cd03226 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES-SGSILLNGKPIKAKERRKSIGYVMQD--VDYQLftd 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEmmilaaNLKLGKElNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:cd03226 88 SVRE------ELLLGLK-ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160
|
170 180
....*....|....*....|....
gi 24580545 228 SSSQCIALLKVLAAGGRTVICSIH 251
Cdd:cd03226 161 NMERVGELIRELAAQGKAVIVITH 184
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
46-277 |
8.57e-28 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 118.32 E-value: 8.57e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 46 LPSWPAVNLQFSELCYVVPDQTNAsktktiLRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPR 125
Cdd:COG4988 329 LPAAGPPSIELEDVSFSYPGGRPA------LDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPP-YSGSILINGVDL 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 126 ---DMRVFRKMSRYIMQTDVL--DSqftvlemmiLAANLKLGKE----------LNLKQKLEVIDeilgmlRLKDTLNTM 190
Cdd:COG4988 402 sdlDPASWRRQIAWVPQNPYLfaGT---------IRENLRLGRPdasdeeleaaLEAAGLDEFVA------ALPDGLDTP 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 191 ----AQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAgGRTVICSIHTPSAkIFEMlDAVYV 266
Cdd:COG4988 467 lgegGRGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK-GRTVILITHRLAL-LAQA-DRILV 543
|
250
....*....|.
gi 24580545 267 LAEGQCVYQGK 277
Cdd:COG4988 544 LDDGRIVEQGT 554
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
68-271 |
1.31e-27 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 109.58 E-value: 1.31e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 68 NASKT---KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSP-----RDMRVFRKMSRYIMQ 139
Cdd:cd03229 5 NVSKRygqKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL-EEPDSGSILIDGEDltdleDELPPLRRRIGMVFQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 140 TDVLDSQFTVLEmmilaaNLKLGkelnlkqklevideilgmlrlkdtlntmaqkLSGGERKRLCIALELVNNPPVIFLDE 219
Cdd:cd03229 84 DFALFPHLTVLE------NIALG-------------------------------LSGGQQQRVALARALAMDPDVLLLDE 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 24580545 220 PTTGLDDLSSSQCIALLKVLAAG-GRTVICSIHTPsAKIFEMLDAVYVLAEGQ 271
Cdd:cd03229 127 PTSALDPITRREVRALLKSLQAQlGITVVLVTHDL-DEAARLADRVVVLRDGK 178
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
72-276 |
1.95e-27 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 110.04 E-value: 1.95e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 72 TKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF--GAVCESGEILVNNSPRD--MRVFRKMSRYIMQTDVLDSQF 147
Cdd:cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRteGNVSVEGDIHYNGIPYKefAEKYPGEIIYVSEEDVHFPTL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEMMILAANLKlGkelnlkqklevideilgmlrlkdtlNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:cd03233 99 TVRETLDFALRCK-G-------------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 24580545 228 SSSQCIALLKVLA-AGGRTVICSIHTPSAKIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03233 153 TALEILKCIRTMAdVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
73-276 |
4.02e-27 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 108.29 E-value: 4.02e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCeSGEILVNNSPRDMRVFRKMSRYImqtdvldsqfTVLEm 152
Cdd:cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDLASLSPKELARKI----------AYVP- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 153 milaanlklgkelnlkQKLEVideiLGMLRLKD-TLNTmaqkLSGGERKRLCIALELVNNPPVIFLDEPTTGLdDLSSSq 231
Cdd:cd03214 80 ----------------QALEL----LGLAHLADrPFNE----LSGGERQRVLLARALAQEPPILLLDEPTSHL-DIAHQ- 133
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24580545 232 cIALLKVLAA----GGRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03214 134 -IELLELLRRlareRGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
68-281 |
6.50e-27 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 109.58 E-value: 6.50e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 68 NASKT----KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVFRKMSRYIM 138
Cdd:cd03256 5 NLSKTypngKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLveptsGSVLIDGTDINKLKGKALRQLRRQIGMIF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 139 QTDVLDSQFTVLE---------MMILAANLKLGKELNLKQKLEVIDEiLGMLrlkDTLNTMAQKLSGGERKRLCIALELV 209
Cdd:cd03256 85 QQFNLIERLSVLEnvlsgrlgrRSTWRSLFGLFPKEEKQRALAALER-VGLL---DKAYQRADQLSGGQQQRVAIARALM 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24580545 210 NNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAG-GRTVICSIHTPS-AKIFemLDAVYVLAEGQCVYQGKGSNI 281
Cdd:cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREeGITVIVSLHQVDlAREY--ADRIVGLKDGRIVFDGPPAEL 232
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
87-281 |
2.39e-26 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 107.52 E-value: 2.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVCeSGEIL-----VNNSPRDMRVFRKMSrYIMQTDVLDSQFTVLEmmilaaNLKL 161
Cdd:cd03224 27 EIVALLGRNGAGKTTLLKTIMGLLPPR-SGSIRfdgrdITGLPPHERARAGIG-YVPEGRRIFPELTVEE------NLLL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 162 GKELNLKQKL-EVIDEILGML-RLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVL 239
Cdd:cd03224 99 GAYARRRAKRkARLERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 24580545 240 AAGGRTVICSIHTpSAKIFEMLDAVYVLAEGQCVYQGKGSNI 281
Cdd:cd03224 179 RDEGVTILLVEQN-ARFALEIADRAYVLERGRVVLEGTAAEL 219
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
41-305 |
2.68e-26 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 115.33 E-value: 2.68e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 41 LGLKYLPSWPAVNLQFSELCYVVPDQTNASKTK-TILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF--GAVCESGE 117
Cdd:PLN03140 145 IGSRALPTLPNAARNIAESALGMLGINLAKKTKlTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKldPSLKVSGE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 118 ILVNNSPRDMRVFRKMSRYIMQTDVLDSQFTVLEMMILAANLK-------LGKELNLKQK------------------LE 172
Cdd:PLN03140 225 ITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQgvgtrydLLSELARREKdagifpeaevdlfmkataME 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 173 VID---------EILGMLRLKDTL--NTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLK-VLA 240
Cdd:PLN03140 305 GVKsslitdytlKILGLDICKDTIvgDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQqIVH 384
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24580545 241 AGGRTVICSIHTPSAKIFEMLDAVYVLAEGQCVYQGKGSNIVPFLKNFGLCCPITYNPADFIIEV 305
Cdd:PLN03140 385 LTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEV 449
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
87-276 |
3.81e-26 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 106.83 E-value: 3.81e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVCeSGEILVNN------SPRDMRVfrkmsRYIMQTDVLDSQFTVLEMMILAANLK 160
Cdd:cd03259 27 EFLALLGPSGCGKTTLLRLIAGLERPD-SGEILIDGrdvtgvPPERRNI-----GMVFQDYALFPHLTVAENIAFGLKLR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 161 LGKELNLKQKlevIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLK-VL 239
Cdd:cd03259 101 GVPKAEIRAR---VRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKeLQ 177
|
170 180 190
....*....|....*....|....*....|....*..
gi 24580545 240 AAGGRTVICSIHTPsAKIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03259 178 RELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
75-276 |
4.21e-26 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 113.78 E-value: 4.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPR---DMRVFRKMSRYIMQTDVLdsqF--TV 149
Cdd:COG2274 490 VLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEP-TSGRILIDGIDLrqiDPASLRRQIGVVLQDVFL---FsgTI 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 150 LEmmilaaNLKLGK-ELNLKQKLEVI------DEILgmlRLKDTLNTM----AQKLSGGERKRLCIALELVNNPPVIFLD 218
Cdd:COG2274 566 RE------NITLGDpDATDEEIIEAArlaglhDFIE---ALPMGYDTVvgegGSNLSGGQRQRLAIARALLRNPRILILD 636
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 219 EPTTGLDDLSSSQCIALLKVLAAgGRTVICSIHTPSakIFEMLDAVYVLAEGQCVYQG 276
Cdd:COG2274 637 EATSALDAETEAIILENLRRLLK-GRTVIIIAHRLS--TIRLADRIIVLDKGRIVEDG 691
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
87-276 |
6.80e-26 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 106.30 E-value: 6.80e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGeILVNNSPRDMRvfRKMSrYIMQTDVLDSQFTVLEMMILAANLKL 161
Cdd:cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLlepdaGFATVDG-FDVVKEPAEAR--RRLG-FVSDSTGLYDRLTARENLEYFAGLYG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 162 GKELNLKQKLEVIDEILGMlrlKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAA 241
Cdd:cd03266 108 LKGDELTARLEELADRLGM---EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184
|
170 180 190
....*....|....*....|....*....|....*
gi 24580545 242 GGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03266 185 LGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
69-273 |
9.74e-26 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 106.43 E-value: 9.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 69 ASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSP---RDMRVFRKMSRYIMQ--TDVL 143
Cdd:COG1124 14 GGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGL-ERPWSGEVTFDGRPvtrRRRKAFRRRVQMVFQdpYASL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 144 DSQFTVLEmmILAANLKLGKELNLKQKlevIDEILGMLRLKDTL--NTMAQkLSGGERKRLCIALELVNNPPVIFLDEPT 221
Cdd:COG1124 93 HPRHTVDR--ILAEPLRIHGLPDREER---IAELLEQVGLPPSFldRYPHQ-LSGGQRQRVAIARALILEPELLLLDEPT 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 24580545 222 TGLDDLSSSQCIALLKVL-AAGGRTVICSIHTPsAKIFEMLDAVYVLAEGQCV 273
Cdd:COG1124 167 SALDVSVQAEILNLLKDLrEERGLTYLFVSHDL-AVVAHLCDRVAVMQNGRIV 218
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
73-288 |
1.52e-25 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 105.83 E-value: 1.52e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNN------SPRDMRVFRKmsRYIM--QTDVL- 143
Cdd:COG1127 18 RVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRP-DSGEILVDGqditglSEKELYELRR--RIGMlfQGGALf 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 144 DSqFTVLEmmilaaN----LKLGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDE 219
Cdd:COG1127 95 DS-LTVFE------NvafpLREHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILLYDE 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 220 PTTGLDDLSSSQCIALLKVL--AAGGRTVICS--IHTpsakIFEMLDAVYVLAEGQCVYQGKGSNIV----PFLKNF 288
Cdd:COG1127 168 PTAGLDPITSAVIDELIRELrdELGLTSVVVThdLDS----AFAIADRVAVLADGKIIAEGTPEELLasddPWVRQF 240
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
71-282 |
1.73e-25 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 105.32 E-value: 1.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNS------------------PRDMRVFRK 132
Cdd:cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-DSGKILLDGQditklpmhkrarlgigylPQEASIFRK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 133 MSryimqtdVLDSQFTVLEMMilaanlklgkELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNP 212
Cdd:cd03218 90 LT-------VEENILAVLEIR----------GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNP 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 213 PVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQGKGSNIV 282
Cdd:cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
68-251 |
2.00e-25 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 104.75 E-value: 2.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 68 NASKT----KTILRRVNgmFH--SHELTAIIGPSGAGKTTLLNLLAGfGAVCESGEILVNN------SPRDMRVFRkmsR 135
Cdd:COG2884 6 NVSKRypggREALSDVS--LEieKGEFVFLTGPSGAGKSTLLKLLYG-EERPTSGQVLVNGqdlsrlKRREIPYLR---R 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 136 YI---MQtdvlDSQF----TVLEmmilaaNLKLGKELNLKQKLEV---IDEILGMLRLKDTLNTMAQKLSGGERKRLCIA 205
Cdd:COG2884 80 RIgvvFQ----DFRLlpdrTVYE------NVALPLRVTGKSRKEIrrrVREVLDLVGLSDKAKALPHELSGGEQQRVAIA 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24580545 206 LELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIH 251
Cdd:COG2884 150 RALVNRPELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATH 195
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
87-276 |
3.08e-25 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 104.11 E-value: 3.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSprDMRVFRKMSR---YIMQTDVLDSQFTVlemmilAANLKLGK 163
Cdd:cd03298 25 EITAIVGPSGSGKSTLLNLIAGF-ETPQSGRVLINGV--DVTAAPPADRpvsMLFQENNLFAHLTV------EQNVGLGL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 164 ELNLK---QKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIAL-LKVL 239
Cdd:cd03298 96 SPGLKltaEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLvLDLH 175
|
170 180 190
....*....|....*....|....*....|....*....
gi 24580545 240 AAGGRTVICSIHTP--SAKIFemlDAVYVLAEGQCVYQG 276
Cdd:cd03298 176 AETKMTVLMVTHQPedAKRLA---QRVVFLDNGRIAAQG 211
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
70-271 |
4.22e-25 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 102.46 E-value: 4.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 70 SKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSPR---DMRVFRKMSRYIMQTDVLDSQ 146
Cdd:cd03228 12 GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL-YDPTSGEILIDGVDLrdlDLESLRKNIAYVPQDPFLFSG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 147 fTVLEmmilaanlklgkelNLkqklevideilgmlrlkdtlntmaqkLSGGERKRLCIALELVNNPPVIFLDEPTTGLDD 226
Cdd:cd03228 91 -TIRE--------------NI--------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDP 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 24580545 227 LSSSQCIALLKVLaAGGRTVICSIHTPSAkiFEMLDAVYVLAEGQ 271
Cdd:cd03228 130 ETEALILEALRAL-AKGKTVIVIAHRLST--IRDADRIIVLDDGR 171
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
68-247 |
5.19e-25 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 103.71 E-value: 5.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 68 NASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPrdMRVFRKMSRYIMQTDVLDSQF 147
Cdd:cd03293 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-TSGEVLVDGEP--VTGPGPDRGYVFQQDALLPWL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEmmilaaNLKLGKELNL---KQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGL 224
Cdd:cd03293 89 TVLD------NVALGLELQGvpkAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162
|
170 180
....*....|....*....|....
gi 24580545 225 DDLSSSQCIA-LLKVLAAGGRTVI 247
Cdd:cd03293 163 DALTREQLQEeLLDIWRETGKTVL 186
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
67-276 |
3.76e-24 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 106.53 E-value: 3.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 67 TNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVFRKMSRYIMQtD 141
Cdd:COG1123 272 VRGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLlrptsGSILFDGKDLTKLSRRSLRELRRRVQMVFQ-D 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 142 V---LDSQFTVLEmmILAANLKLGKELNLKQKLEVIDEILGMLRL-KDTLNTMAQKLSGGERKRLCIALELVNNPPVIFL 217
Cdd:COG1123 351 PyssLNPRMTVGD--IIAEPLRLHGLLSRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIARALALEPKLLIL 428
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 218 DEPTTGLDDLSSSQCIALLKVLAA-GGRTVICSIHTpSAKIFEMLDAVYVLAEGQCVYQG 276
Cdd:COG1123 429 DEPTSALDVSVQAQILNLLRDLQReLGLTYLFISHD-LAVVRYIADRVAVMYDGRIVEDG 487
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
53-276 |
1.15e-23 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 99.59 E-value: 1.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 53 NLQFSELCYVVPDQTNASktktiLRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSPR---DMRV 129
Cdd:cd03245 2 RIEFRNVSFSYPNQEIPA-----LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL-YKPTSGSVLLDGTDIrqlDPAD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 130 FRKMSRYIMQTDVLdsqF--TVLEmmilaaNLKLGKELNLKQKLEVIDEILG----MLRLKDTLNTM----AQKLSGGER 199
Cdd:cd03245 76 LRRNIGYVPQDVTL---FygTLRD------NITLGAPLADDERILRAAELAGvtdfVNKHPNGLDLQigerGRGLSGGQR 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 200 KRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLaAGGRTVICSIHTPSakIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL-LGDKTLIIITHRPS--LLDLVDRIIVMDSGRIVADG 220
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
71-276 |
1.58e-23 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 99.61 E-value: 1.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP-RDM--RVFRKMSRYIMQTDVLDSQf 147
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDiRDIsrKSLRSMIGVVLQDTFLFSG- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEmmilaaNLKLGKELNLKQKLEVIDEILGML----RLKDTLNTM----AQKLSGGERKRLCIALELVNNPPVIFLDE 219
Cdd:cd03254 92 TIME------NIRLGRPNATDEEVIEAAKEAGAHdfimKLPNGYDTVlgenGGNLSQGERQLLAIARAMLRDPKILILDE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 24580545 220 PTTGLDDlSSSQCI--ALLKVLAagGRTVICSIHTPSakIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03254 166 ATSNIDT-ETEKLIqeALEKLMK--GRTSIIIAHRLS--TIKNADKILVLDDGKIIEEG 219
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
34-267 |
1.62e-23 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 105.06 E-value: 1.62e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 34 SEDFQTVL--------GLKYLPSWPAVNLQFSELCYVVPDQTNAsktktiLRRVNGMFHSHELTAIIGPSGAGKTTLLNL 105
Cdd:TIGR02857 294 AEALFAVLdaaprplaGKAPVTAAPASSLEFSGVSVAYPGRRPA------LRPVSFTVPPGERVALVGPSGAGKSTLLNL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 106 LAGFGAVcESGEILVNNSPR---DMRVFRKMSRYIMQTDVLDSQftvlemmILAANLKLGK----ELNLKQKLEVIDeIL 178
Cdd:TIGR02857 368 LLGFVDP-TEGSIAVNGVPLadaDADSWRDQIAWVPQHPFLFAG-------TIAENIRLARpdasDAEIREALERAG-LD 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 179 GMLR-LKDTLNTMAQK----LSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLaAGGRTVICSIHTP 253
Cdd:TIGR02857 439 EFVAaLPQGLDTPIGEggagLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRAL-AQGRTVLLVTHRL 517
|
250
....*....|....
gi 24580545 254 saKIFEMLDAVYVL 267
Cdd:TIGR02857 518 --ALAALADRIVVL 529
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
87-276 |
3.79e-23 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 98.14 E-value: 3.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGF-----------GAVCESGEILVNNSPRDMRVfrkmsRYIMQTDVLDSQFTVLEmmil 155
Cdd:cd03297 24 EVTGIFGASGAGKSTLLRCIAGLekpdggtivlnGTVLFDSRKKINLPPQQRKI-----GLVFQQYALFPHLNVRE---- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 156 aaNLKLG-KELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIA 234
Cdd:cd03297 95 --NLAFGlKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24580545 235 LLKVLAAG-GRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03297 173 ELKQIKKNlNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
73-277 |
3.97e-23 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 99.00 E-value: 3.97e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG-----FGAVCE-SGEILVNNSPRDMRvfrkmsRYI------MQT 140
Cdd:COG1119 16 KTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGdlpptYGNDVRlFGERRGGEDVWELR------KRIglvspaLQL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 141 DVLDSQfTVLEMMI--LAANLKLGKELNLKQKlEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLD 218
Cdd:COG1119 90 RFPRDE-TVLDVVLsgFFDSIGLYREPTDEQR-ERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKDPELLILD 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 219 EPTTGLDDLSSSQCIALLKVLAAGGRTVIcsihtpsakIF------EMLDAVY---VLAEGQCVYQGK 277
Cdd:COG1119 168 EPTAGLDLGARELLLALLDKLAAEGAPTL---------VLvthhveEIPPGIThvlLLKDGRVVAAGP 226
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
74-277 |
5.75e-23 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 98.57 E-value: 5.75e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 74 TILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNspRDM------RVFRK-MSRyIMQTDVLDSQ 146
Cdd:COG0411 18 VAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRP-TSGRILFDG--RDItglpphRIARLgIAR-TFQNPRLFPE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 147 FTVLEMMILAANLKLGKEL------------NLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPV 214
Cdd:COG0411 94 LTVLENVLVAAHARLGRGLlaallrlprarrEEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIARALATEPKL 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 215 IFLDEPTTGLDDLSSSQCIALLKVLAAG-GRTVIcsI--HTPSAkIFEMLDAVYVLAEGQCVYQGK 277
Cdd:COG0411 174 LLLDEPAAGLNPEETEELAELIRRLRDErGITIL--LieHDMDL-VMGLADRIVVLDFGRVIAEGT 236
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
70-239 |
8.65e-23 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 97.42 E-value: 8.65e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 70 SKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGaVCESGEILVNN------SPRDMRVFRKMSR-YIMQTDV 142
Cdd:TIGR02211 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NPTSGEVLFNGqslsklSSNERAKLRNKKLgFIYQFHH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 143 LDSQFTVLE--MMILAanlkLGKElNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEP 220
Cdd:TIGR02211 94 LLPDFTALEnvAMPLL----IGKK-SVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEP 168
|
170
....*....|....*....
gi 24580545 221 TTGLDDLSSSQCIALLKVL 239
Cdd:TIGR02211 169 TGNLDNNNAKIIFDLMLEL 187
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
73-276 |
1.19e-22 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 97.88 E-value: 1.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNN------SPRDM-RVfrkmsRYIM-QTDVLD 144
Cdd:COG4559 14 RTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGE-LTPSSGEVRLNGrplaawSPWELaRR-----RAVLpQHSSLA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 145 SQFTVLE--MMILAANLKLGKelnlkQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKR------LCIALELVNNPP-VI 215
Cdd:COG4559 88 FPFTVEEvvALGRAPHGSSAA-----QDRQIVREALALVGLAHLAGRSYQTLSGGEQQRvqlarvLAQLWEPVDGGPrWL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 216 FLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTpsakifemL-------DAVYVLAEGQCVYQG 276
Cdd:COG4559 163 FLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLHD--------LnlaaqyaDRILLLHQGRLVAQG 222
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
71-276 |
1.52e-22 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 96.13 E-value: 1.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVN--NSPRDMRVFRKMSRyIMQTDVLDSQFT 148
Cdd:cd03268 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-DSGEITFDgkSYQKNIEALRRIGA-LIEAPGFYPNLT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 149 VLEMMILAANLKLGKElnlkqklEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLS 228
Cdd:cd03268 89 ARENLRLLARLLGIRK-------KRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 24580545 229 SSQCIALLKVLAAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03268 162 IKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
69-247 |
2.46e-22 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 97.08 E-value: 2.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 69 ASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDmRVFRKMSrYIMQTDVLdsqF- 147
Cdd:COG1116 20 GGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKP-TSGEVLVDGKPVT-GPGPDRG-VVFQEPAL---Lp 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 --TVLEmmilaaNLKLG---KELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTT 222
Cdd:COG1116 94 wlTVLD------NVALGlelRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLMDEPFG 167
|
170 180 190
....*....|....*....|....*....|...
gi 24580545 223 GLD--------DLsssqciaLLKVLAAGGRTVI 247
Cdd:COG1116 168 ALDaltrerlqDE-------LLRLWQETGKTVL 193
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
73-225 |
2.57e-22 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 96.10 E-value: 2.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgavcesgEILVNNSPRDMRVFrkmsryIMQTDVLDSQFTVLEM 152
Cdd:cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRL-------NDLIPGAPDEGEVL------LDGKDIYDLDVDVLEL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 153 ---------------MILAANLKLGKELNLKQKLEVIDEI----LGMLRLKDTLN--TMAQKLSGGERKRLCIALELVNN 211
Cdd:cd03260 80 rrrvgmvfqkpnpfpGSIYDNVAYGLRLHGIKLKEELDERveeaLRKAALWDEVKdrLHALGLSGGQQQRLCLARALANE 159
|
170
....*....|....
gi 24580545 212 PPVIFLDEPTTGLD 225
Cdd:cd03260 160 PEVLLLDEPTSALD 173
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
75-251 |
3.92e-22 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 94.41 E-value: 3.92e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILvNNSPRDMRVFRKMSRYIMQtDVLDSQF-- 147
Cdd:TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLlrpqsGAVLIDGEPL-DYSRKGLLERRQRVGLVFQ-DPDDQLFaa 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEMMILAA-NLKL-GKELNlkqklEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:TIGR01166 85 DVDQDVAFGPlNLGLsEAEVE-----RRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159
|
170 180
....*....|....*....|....*.
gi 24580545 226 DLSSSQCIALLKVLAAGGRTVICSIH 251
Cdd:TIGR01166 160 PAGREQMLAILRRLRAEGMTVVISTH 185
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
71-276 |
5.85e-22 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 94.65 E-value: 5.85e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDMRVFRKMSrYIMQTDVLDSQFTVL 150
Cdd:cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-DSGEVLFDGKPLDIAARNRIG-YLPEERGLYPKMKVI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 151 EMMILAANLKlgkELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSS 230
Cdd:cd03269 89 DQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVE 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24580545 231 QCIALLKVLAAGGRTVICSIHTpSAKIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03269 166 LLKDVIRELARAGKTVILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
68-225 |
6.72e-22 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 95.00 E-value: 6.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 68 NASKT---KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP-RDMRVFRKMSRYIMQTDVL 143
Cdd:cd03300 5 NVSKFyggFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-TSGEILLDGKDiTNLPPHKRPVNTVFQNYAL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 144 DSQFTVLEMMILAANLKLGKELNLKQKlevIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTG 223
Cdd:cd03300 84 FPHLTVFENIAFGLRLKKLPKAEIKER---VAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
|
..
gi 24580545 224 LD 225
Cdd:cd03300 161 LD 162
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
74-253 |
1.32e-21 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 93.07 E-value: 1.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 74 TILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGfgavcesgeILvnnSPRDMRVFRKMSR---YIMQTDVLDSQF--T 148
Cdd:NF040873 6 PVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAG---------VL---RPTSGTVRRAGGArvaYVPQRSEVPDSLplT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 149 VLE--MMILAANLKLGKELNlKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDD 226
Cdd:NF040873 74 VRDlvAMGRWARRGLWRRLT-RDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDA 152
|
170 180
....*....|....*....|....*..
gi 24580545 227 LSSSQCIALLKVLAAGGRTVICSIHTP 253
Cdd:NF040873 153 ESRERIIALLAEEHARGATVVVVTHDL 179
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
72-246 |
1.48e-21 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 94.93 E-value: 1.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 72 TKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAvCESGEILVNNSP-------RDMrVFrkmsryimQTDVLD 144
Cdd:COG4525 19 PQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLA-PSSGEITLDGVPvtgpgadRGV-VF--------QKDALL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 145 SQFTVLEMMILAanLKLgKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGL 224
Cdd:COG4525 89 PWLNVLDNVAFG--LRL-RGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGAL 165
|
170 180
....*....|....*....|...
gi 24580545 225 DDLSSSQCIAL-LKVLAAGGRTV 246
Cdd:COG4525 166 DALTREQMQELlLDVWQRTGKGV 188
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
87-251 |
1.55e-21 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 93.24 E-value: 1.55e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSP----RDMRV--FRKMSRYIMQTDVLDSQFTVLEMMILAANL- 159
Cdd:cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE-ELPTSGTIRVNGQDvsdlRGRAIpyLRRKIGVVFQDFRLLPDRNVYENVAFALEVt 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 160 -KLGKELNLKqklevIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKV 238
Cdd:cd03292 107 gVPPREIRKR-----VPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181
|
170
....*....|...
gi 24580545 239 LAAGGRTVICSIH 251
Cdd:cd03292 182 INKAGTTVVVATH 194
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
87-251 |
2.36e-21 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 93.20 E-value: 2.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLL-------------AGFGAVCESGEIlvnnsprdmrvfRKMSRYIMQTDVLDSQFTVLEMM 153
Cdd:cd03265 27 EIFGLLGPNGAGKTTTIKMLttllkptsgratvAGHDVVREPREV------------RRRIGIVFQDLSVDDELTGWENL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 154 ILAANLKLGKELNLKQKlevIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCI 233
Cdd:cd03265 95 YIHARLYGVPGAERRER---IDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW 171
|
170
....*....|....*....
gi 24580545 234 ALLKVL-AAGGRTVICSIH 251
Cdd:cd03265 172 EYIEKLkEEFGMTILLTTH 190
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
90-281 |
3.36e-21 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 93.17 E-value: 3.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKTTLLNLLAGFgAVCESGEILVN-----NSPRDMRVFRkmsrYIMQTDVLDSQFTVLEmmilaaNLKLGKE 164
Cdd:cd03299 29 VILGPTGSGKSVLLETIAGF-IKPDSGKILLNgkditNLPPEKRDIS----YVPQNYALFPHMTVYK------NIAYGLK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 165 LNLKQKLEV---IDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVL-A 240
Cdd:cd03299 98 KRKVDKKEIerkVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIrK 177
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 24580545 241 AGGRTVICSIHTpSAKIFEMLDAVYVLAEGQCVYQGKGSNI 281
Cdd:cd03299 178 EFGVTVLHVTHD-FEEAWALADKVAIMLNGKLIQVGKPEEV 217
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
54-276 |
3.64e-21 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 97.67 E-value: 3.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVPDQTnasktKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG--------FGAVCESGEILVNNSPR 125
Cdd:COG1123 5 LEVRDLSVRYPGGD-----VPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGllphggriSGEVLLDGRDLLELSEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 126 DMRvfRKMSrYIMQTDvlDSQF---TVLEMMILA-ANLKLGKElnlkQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKR 201
Cdd:COG1123 80 LRG--RRIG-MVFQDP--MTQLnpvTVGDQIAEAlENLGLSRA----EARARVLELLEAVGLERRLDRYPHQLSGGQRQR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 202 LCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAA-GGRTVICSIHTPsAKIFEMLDAVYVLAEGQCVYQG 276
Cdd:COG1123 151 VAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQReRGTTVLLITHDL-GVVAEIADRVVVMDDGRIVEDG 225
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
87-277 |
4.11e-21 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 92.51 E-value: 4.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNN------SPRDmrvfRKMSrYIMQTDVLDSQFTVlemmilAANLK 160
Cdd:COG3840 26 ERVAILGPSGAGKSTLLNLIAGFLPP-DSGRILWNGqdltalPPAE----RPVS-MLFQENNLFPHLTV------AQNIG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 161 LGKELNLK----QKLEViDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALL 236
Cdd:COG3840 94 LGLRPGLKltaeQRAQV-EQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEMLDLV 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 24580545 237 KVLAAG-GRTVICSIHTPS--AKIFemlDAVYVLAEGQCVYQGK 277
Cdd:COG3840 173 DELCRErGLTVLMVTHDPEdaARIA---DRVLLVADGRIAADGP 213
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
75-277 |
4.72e-21 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 93.53 E-value: 4.72e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILvNNSPRDMRVFRKMSRYIMQTDVLDSQFTV 149
Cdd:PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLlrpqkGAVLWQGKPL-DYSKRGLLALRQQVATVFQDPEQQIFYTD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 150 LEMMILAANLKLG-KELNLKQKlevIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLS 228
Cdd:PRK13638 95 IDSDIAFSLRNLGvPEAEITRR---VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24580545 229 SSQCIALLKVLAAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQGK 277
Cdd:PRK13638 172 RTQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVLRQGQILTHGA 219
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
54-271 |
9.66e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 89.97 E-value: 9.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVPDQTNasktkTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNN---SPRDMRVF 130
Cdd:cd03246 1 LEVENVSFRYPGAEP-----PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGadiSQWDPNEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 131 RKMSRYIMQTDVLDSQftvlemmilaanlklgkelnlkqklEVIDEILgmlrlkdtlntmaqklSGGERKRLCIALELVN 210
Cdd:cd03246 75 GDHVGYLPQDDELFSG-------------------------SIAENIL----------------SGGQRQRLGLARALYG 113
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24580545 211 NPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAkiFEMLDAVYVLAEGQ 271
Cdd:cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET--LASADRILVLEDGR 172
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
54-276 |
1.80e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 92.22 E-value: 1.80e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVPDQTNAsktktiLRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSPRD-----MR 128
Cdd:PRK13636 6 LKVEELNYNYSDGTHA------LKGININIKKGEVTAILGGNGAGKSTLFQNLNGI-LKPSSGRILFDGKPIDysrkgLM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 129 VFRKMSRYIMQTDvlDSQF---TVLEMMILAA-NLKLGKElNLKQKLEVIDEILGMLRLKdtlNTMAQKLSGGERKRLCI 204
Cdd:PRK13636 79 KLRESVGMVFQDP--DNQLfsaSVYQDVSFGAvNLKLPED-EVRKRVDNALKRTGIEHLK---DKPTHCLSFGQKKRVAI 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24580545 205 ALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAG-GRTVICSIHtpSAKIFEML-DAVYVLAEGQCVYQG 276
Cdd:PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKElGLTIIIATH--DIDIVPLYcDNVFVMKEGRVILQG 224
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
54-276 |
6.21e-20 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 87.75 E-value: 6.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVPDQTnasktKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGfGAVCESGEILVNNSPrdmrvfrkM 133
Cdd:cd03247 1 LSINNVSFSYPEQE-----QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG-DLKPQQGEITLDGVP--------V 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 134 SRYimqTDVLDSQFTVLEmmilaanlklgkelnlkQKLEVIDEILgmlrlkdtLNTMAQKLSGGERKRLCIALELVNNPP 213
Cdd:cd03247 67 SDL---EKALSSLISVLN-----------------QRPYLFDTTL--------RNNLGRRFSGGERQRLALARILLQDAP 118
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24580545 214 VIFLDEPTTGLDDLSSSQCIALLkVLAAGGRTVICSIHTPSAkiFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03247 119 IVLLDEPTVGLDPITERQLLSLI-FEVLKDKTLIWITHHLTG--IEHMDKILFLENGKIIMQG 178
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
71-282 |
7.17e-20 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 89.26 E-value: 7.17e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNS------------------PRDMRVFRK 132
Cdd:TIGR04406 12 KKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRP-DAGKILIDGQdithlpmherarlgigylPQEASIFRK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 133 MSryimqtdVLDSQFTVLEMMilaanlklgKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNP 212
Cdd:TIGR04406 91 LT-------VEENIMAVLEIR---------KDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNP 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24580545 213 PVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTpsakIFEMLDAV---YVLAEGQCVYQGKGSNIV 282
Cdd:TIGR04406 155 KFILLDEPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHN----VRETLDICdraYIISDGKVLAEGTPAEIV 223
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
51-316 |
7.67e-20 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 91.43 E-value: 7.67e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 51 AVNLQFSELCYVVPDQTNASKT---KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNS--PR 125
Cdd:PRK13536 29 AKASIPGSMSTVAIDLAGVSKSygdKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP-DAGKITVLGVpvPA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 126 DMRVFRKMSRYIMQTDVLDSQFTVLEMMILaanlkLGKELNLK-QKLE-VIDEILGMLRLKDTLNTMAQKLSGGERKRLC 203
Cdd:PRK13536 108 RARLARARIGVVPQFDNLDLEFTVRENLLV-----FGRYFGMStREIEaVIPSLLEFARLESKADARVSDLSGGMKRRLT 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 204 IALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHtpsakIFE----MLDAVYVLAEGQCVYQGKGS 279
Cdd:PRK13536 183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH-----FMEeaerLCDRLCVLEAGRKIAEGRPH 257
|
250 260 270
....*....|....*....|....*....|....*..
gi 24580545 280 NIVPflKNFGlcCPitynpadfIIEVacleYGGSYHE 316
Cdd:PRK13536 258 ALID--EHIG--CQ--------VIEI----YGGDPHE 278
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
75-277 |
1.76e-19 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 87.93 E-value: 1.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNN---SPRDMRVFRKMSRYIMQTDVLDSQfTVLE 151
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF-YVPENGRVLVDGhdlALADPAWLRRQVGVVLQENVLFNR-SIRD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 152 mmilaaNLKLGKELNLKQKLEVIDEILG----MLRLKDTLNTMAQK----LSGGERKRLCIALELVNNPPVIFLDEPTTG 223
Cdd:cd03252 95 ------NIALADPGMSMERVIEAAKLAGahdfISELPEGYDTIVGEqgagLSGGQRQRIAIARALIHNPRILIFDEATSA 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 24580545 224 LDDLSSSQCIALLKVLAAgGRTVICSIHTPSAkiFEMLDAVYVLAEGQCVYQGK 277
Cdd:cd03252 169 LDYESEHAIMRNMHDICA-GRTVIIIAHRLST--VKNADRIIVMEKGRIVEQGS 219
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
85-253 |
2.42e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 86.85 E-value: 2.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 85 SHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDMRVFRKMSRYIMQTDVLDSQFTVLEMMILAANLKLGKE 164
Cdd:PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLPP-AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 165 LNlkqklevIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGR 244
Cdd:PRK13539 106 LD-------IAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGG 178
|
....*....
gi 24580545 245 TVICSIHTP 253
Cdd:PRK13539 179 IVIAATHIP 187
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
54-276 |
2.96e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 88.32 E-value: 2.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVpdqtnaSKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSP---RDMRVF 130
Cdd:PRK13652 4 IETRDLCYSY------SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI-LKPTSGSVLIRGEPitkENIREV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 131 RKMSRYIMQTDvlDSQF--TVLEMMILAANLKLGkeLNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALEL 208
Cdd:PRK13652 77 RKFVGLVFQNP--DDQIfsPTVEQDIAFGPINLG--LDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24580545 209 VNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAG-GRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQG 276
Cdd:PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYG 220
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
54-276 |
3.17e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 88.21 E-value: 3.17e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVPDQTNAsktktiLRRVNGMFHSHELTAIIGPSGAGKTTLLnllAGFGAVCE--SGEILVNNSP-----RD 126
Cdd:PRK13639 2 LETRDLKYSYPDGTEA------LKGINFKAEKGEMVALLGPNGAGKSTLF---LHFNGILKptSGEVLIKGEPikydkKS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 127 MRVFRKMSRYIMQTDvlDSQF---TVLEMMILAA-NLKLGKElnlkqklEV---IDEILGMLRLKDTLNTMAQKLSGGER 199
Cdd:PRK13639 73 LLEVRKTVGIVFQNP--DDQLfapTVEEDVAFGPlNLGLSKE-------EVekrVKEALKAVGMEGFENKPPHHLSGGQK 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 200 KRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPS-AKIFEmlDAVYVLAEGQCVYQG 276
Cdd:PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDlVPVYA--DKVYVMSDGKIIKEG 219
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
87-253 |
3.39e-19 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 91.27 E-value: 3.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP----RDMRVFRKMSRYIMQTDVLDSqfTVLEmmilaaNLKLG 162
Cdd:TIGR02868 362 ERVAILGPSGSGKSTLLATLAGLLDP-LQGEVTLDGVPvsslDQDEVRRRVSVCAQDAHLFDT--TVRE------NLRLA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 163 KElnlkqklEVID-EILGMLR----------LKDTLNT----MAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:TIGR02868 433 RP-------DATDeELWAALErvgladwlraLPDGLDTvlgeGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505
|
170 180
....*....|....*....|....*..
gi 24580545 228 SSSQCIALLkvLAAG-GRTVICSIHTP 253
Cdd:TIGR02868 506 TADELLEDL--LAALsGRTVVLITHHL 530
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
87-279 |
4.69e-19 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 86.57 E-value: 4.69e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVCeSGEILVNNSP-RDMRVFRKMSR---YIMQTDVLDSQFTVLEmmilaaNLKLG 162
Cdd:COG0410 30 EIVALLGRNGAGKTTLLKAISGLLPPR-SGSIRFDGEDiTGLPPHRIARLgigYVPEGRRIFPSLTVEE------NLLLG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 163 KELNLKQKL--EVIDEILGML-RLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGL-----DDLsssqcIA 234
Cdd:COG0410 103 AYARRDRAEvrADLERVYELFpRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLaplivEEI-----FE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 24580545 235 LLKVLAAGGRTVIcsI---HTPSAkiFEMLDAVYVLAEGQCVYQGKGS 279
Cdd:COG0410 178 IIRRLNREGVTIL--LveqNARFA--LEIADRAYVLERGRIVLEGTAA 221
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
71-276 |
5.94e-19 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 86.62 E-value: 5.94e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNnsprDMRVFRKMSRYIMQTDVLDSQFTVL 150
Cdd:cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL-LQPTSGEVRVA----GLVPWKRRKKFLRRIGVVFGQKTQL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 151 emmilAANLKLGKELNLKQKL---------EVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPT 221
Cdd:cd03267 107 -----WWDLPVIDSFYLLAAIydlpparfkKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 222 TGLDDLSSSQCIALLKVLAAG-GRTVICSIHtpSAKIFEML-DAVYVLAEGQCVYQG 276
Cdd:cd03267 182 IGLDVVAQENIRNFLKEYNRErGTTVLLTSH--YMKDIEALaRRVLVIDKGRLLYDG 236
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
73-276 |
6.40e-19 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 86.66 E-value: 6.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGA--VcESGEILVNN------SPrDMR----VFrkmsrYIMQT 140
Cdd:COG0396 13 KEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKyeV-TSGSILLDGedilelSP-DERaragIF-----LAFQY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 141 DVldsQF---TVLEMMILAANLKLGKELNLKQKLEVIDEILGMLRLKDTlntMAQK-----LSGGERKRLCIALELVNNP 212
Cdd:COG0396 86 PV---EIpgvSVSNFLRTALNARRGEELSAREFLKLLKEKMKELGLDED---FLDRyvnegFSGGEKKRNEILQMLLLEP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24580545 213 PVIFLDEPTTGLDdlsssqcIALLKVLAAG-------GRTVIcsIHTPSAKIFEML--DAVYVLAEGQCVYQG 276
Cdd:COG0396 160 KLAILDETDSGLD-------IDALRIVAEGvnklrspDRGIL--IITHYQRILDYIkpDFVHVLVDGRIVKSG 223
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
72-276 |
8.02e-19 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 86.61 E-value: 8.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 72 TKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDMRVFRKMSRYIMqtdVLDSQFTVLE 151
Cdd:PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGDKPISMLSSRQLARRLA---LLPQHHLTPE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 152 MMILAANLKLGKE--LNLKQKLEVIDEILGMLRLKDT-LNTMAQK----LSGGERKRLCIALELVNNPPVIFLDEPTTGL 224
Cdd:PRK11231 90 GITVRELVAYGRSpwLSLWGRLSAEDNARVNQAMEQTrINHLADRrltdLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 24580545 225 DDLSSSQCIALLKVLAAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQG 276
Cdd:PRK11231 170 DINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQG 220
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
87-225 |
8.03e-19 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 86.17 E-value: 8.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP-RDMRVFRKMSRYIMQTDVLDSQFTVlemmilAANLKLGKEL 165
Cdd:PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFLTP-ASGSLTLNGQDhTTTPPSRRPVSMLFQENNLFSHLTV------AQNIGLGLNP 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24580545 166 NLK----QKLEViDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK10771 99 GLKlnaaQREKL-HAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
71-225 |
1.00e-18 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 85.85 E-value: 1.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNS------------------PRDMRVFRK 132
Cdd:COG1137 14 GKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGL-VKPDSGRIFLDGEdithlpmhkrarlgigylPQEASIFRK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 133 MSryimqtdVLDSQFTVLEMMilaanlklgkELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNP 212
Cdd:COG1137 93 LT-------VEDNILAVLELR----------KLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNP 155
|
170
....*....|...
gi 24580545 213 PVIFLDEPTTGLD 225
Cdd:COG1137 156 KFILLDEPFAGVD 168
|
|
| 3a0107s01c2 |
TIGR00972 |
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein ... |
73-240 |
1.02e-18 |
|
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. [Transport and binding proteins, Anions]
Pssm-ID: 273372 [Multi-domain] Cd Length: 247 Bit Score: 86.19 E-value: 1.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLL-------NLLAGFGAvceSGEIL-----VNNSPRDMRVFRKMSRYIMQt 140
Cdd:TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLrslnrmnDLVPGVRI---EGKVLfdgqdIYDKKIDVVELRRRVGMVFQ- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 141 dvldsQFTVLEMMI---LAANLKLGKELNLKQKLEVIDEILGMLRL----KDTLNTMAQKLSGGERKRLCIALELVNNPP 213
Cdd:TIGR00972 90 -----KPNPFPMSIydnIAYGPRLHGIKDKKELDEIVEESLKKAALwdevKDRLHDSALGLSGGQQQRLCIARALAVEPE 164
|
170 180
....*....|....*....|....*..
gi 24580545 214 VIFLDEPTTGLDDLSSSQCIALLKVLA 240
Cdd:TIGR00972 165 VLLLDEPTSALDPIATGKIEELIQELK 191
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
67-277 |
1.05e-18 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 85.71 E-value: 1.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 67 TNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgavcE---SGEILVNN------SPRDMRVFRKMSRYI 137
Cdd:cd03258 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL----ErptSGSVLVDGtdltllSGKELRKARRRIGMI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 138 MQTDVLDSQFTVLEMMILAanLKLGKELNLKQKlEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFL 217
Cdd:cd03258 88 FQHFNLLSSRTVFENVALP--LEIAGVPKAEIE-ERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLC 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 218 DEPTTGLDDLSSSQCIALLKVLAAG-GRTVICSIHtpsakifEM------LDAVYVLAEGQCVYQGK 277
Cdd:cd03258 165 DEATSALDPETTQSILALLRDINRElGLTIVLITH-------EMevvkriCDRVAVMEKGEVVEEGT 224
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
79-277 |
1.37e-18 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 87.17 E-value: 1.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 79 VNGM-FHSH--ELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSPRDMRVFRKMSRY--IMQTDVLDSQFTVLEmm 153
Cdd:PRK13537 23 VDGLsFHVQrgECFGLLGPNGAGKTTTLRMLLGL-THPDAGSISLCGEPVPSRARHARQRVgvVPQFDNLDPDFTVRE-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 154 ilaaNLKL-GKELNLK--QKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSS 230
Cdd:PRK13537 100 ----NLLVfGRYFGLSaaAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 24580545 231 QCIALLKVLAAGGRTVICSIH-TPSAKifEMLDAVYVLAEGQCVYQGK 277
Cdd:PRK13537 176 LMWERLRSLLARGKTILLTTHfMEEAE--RLCDRLCVIEEGRKIAEGA 221
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
73-277 |
1.54e-18 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 85.36 E-value: 1.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNspRDMR-----VFRKMSRYIMQTDVLdsqF 147
Cdd:cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-SSGSILIDG--QDIRevtldSLRRAIGVVPQDTVL---F 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 -TVLEMMILAANLKLGKElnlkqklEVI---------DEILgmlRLKDTLNTM----AQKLSGGERKRLCIALELVNNPP 213
Cdd:cd03253 88 nDTIGYNIRYGRPDATDE-------EVIeaakaaqihDKIM---RFPDGYDTIvgerGLKLSGGEKQRVAIARAILKNPP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 214 VIFLDEPTTGLDDLSSSQCIALLKVLAAgGRTVICSIHTPSakifEMLDA--VYVLAEGQCVYQGK 277
Cdd:cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS----TIVNAdkIIVLKDGRIVERGT 218
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
67-225 |
1.81e-18 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 88.97 E-value: 1.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 67 TNASK---TKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVnnsPRDMRVfrkmsRYIMQTDVL 143
Cdd:COG0488 2 ENLSKsfgGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEP-DSGEVSI---PKGLRI-----GYLPQEPPL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 144 DSQFTVLE--MMILAANLKLGKELN------------------LKQKLEVID---------EILGMLRLK-DTLNTMAQK 193
Cdd:COG0488 73 DDDLTVLDtvLDGDAELRALEAELEeleaklaepdedlerlaeLQEEFEALGgweaearaeEILSGLGFPeEDLDRPVSE 152
|
170 180 190
....*....|....*....|....*....|..
gi 24580545 194 LSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:COG0488 153 LSGGWRRRVALARALLSEPDLLLLDEPTNHLD 184
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
87-277 |
2.23e-18 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 85.28 E-value: 2.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAvcESGEILVNN------SPRDMRVFRKmsrYIMQTDVLDSQFTVLEMmiLAanLK 160
Cdd:COG4138 23 ELIHLIGPNGAGKSTLLARMAGLLP--GQGEILLNGrplsdwSAAELARHRA---YLSQQQSPPFAMPVFQY--LA--LH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 161 LGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIA---LEL--VNNPP--VIFLDEPTTGLDdlsSSQCI 233
Cdd:COG4138 94 QPAGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAavlLQVwpTINPEgqLLLLDEPMNSLD---VAQQA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 24580545 234 ALLKVL---AAGGRTVICSIHTpsakifemL-------DAVYVLAEGQCVYQGK 277
Cdd:COG4138 171 ALDRLLrelCQQGITVVMSSHD--------LnhtlrhaDRVWLLKQGKLVASGE 216
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
47-277 |
3.68e-18 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 88.34 E-value: 3.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 47 PSWPAVNLQFSELCYVVPDQTNAsktktILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAvCESGEILVNNSPrd 126
Cdd:PRK11160 332 AAADQVSLTLNNVSFTYPDQPQP-----VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-PQQGEILLNGQP-- 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 127 mrvfrkMSRYIMQTdvLDSQFTVLEMMI------LAANLKLGKELNLKQKLEVIDEILGMLRLKDT---LNTM----AQK 193
Cdd:PRK11160 404 ------IADYSEAA--LRQAISVVSQRVhlfsatLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDdkgLNAWlgegGRQ 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 194 LSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAgGRTVICSIHTPSAkiFEMLDAVYVLAEGQCV 273
Cdd:PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRLTG--LEQFDRICVMDNGQII 552
|
....
gi 24580545 274 YQGK 277
Cdd:PRK11160 553 EQGT 556
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
75-277 |
4.21e-18 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 84.13 E-value: 4.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSP-RDM--RVFRKMSRYIMQTDVLdsqF--TV 149
Cdd:cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF-YDPTSGEILLDGVDiRDLnlRWLRSQIGLVSQEPVL---FdgTI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 150 LEmmilaaNLKLGKElnlKQKLEVIDEILGM-------LRLKDTLNTM----AQKLSGGERKRLCIALELVNNPPVIFLD 218
Cdd:cd03249 94 AE------NIRYGKP---DATDEEVEEAAKKanihdfiMSLPDGYDTLvgerGSQLSGGQKQRIAIARALLRNPKILLLD 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24580545 219 EPTTGLDdlSSSQCI---ALLKvlAAGGRTVICSIHTPSAkIFEMlDAVYVLAEGQCVYQGK 277
Cdd:cd03249 165 EATSALD--AESEKLvqeALDR--AMKGRTTIVIAHRLST-IRNA-DLIAVLQNGQVVEQGT 220
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
69-282 |
4.65e-18 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 84.17 E-value: 4.65e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 69 ASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNS------------------PRDMRVF 130
Cdd:PRK10895 12 AYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-DAGNIIIDDEdisllplhararrgigylPQEASIF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 131 RKMSryimqtdVLDSQFTVLEMMilaanlklgKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVN 210
Cdd:PRK10895 91 RRLS-------VYDNLMAVLQIR---------DDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24580545 211 NPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTpsakIFEMLDA---VYVLAEGQCVYQGKGSNIV 282
Cdd:PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN----VRETLAVcerAYIVSQGHLIAHGTPTEIL 225
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
87-225 |
5.63e-18 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 85.92 E-value: 5.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNspRDM-------R----VFrkmsryimQTDVLdsqF---TVLEm 152
Cdd:COG3842 32 EFVALLGPSGCGKTTLLRMIAGFETP-DSGRILLDG--RDVtglppekRnvgmVF--------QDYAL---FphlTVAE- 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 153 milaaN----LKLGKeLNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:COG3842 97 -----NvafgLRMRG-VPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALD 167
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
73-276 |
7.49e-18 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 87.53 E-value: 7.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNgmFH--SHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP-RDMRV--FRKMSRYIMQTDVLdsqF 147
Cdd:COG1132 353 RPVLKDIS--LTipPGETVALVGPSGSGKSTLVNLLLRFYDP-TSGRILIDGVDiRDLTLesLRRQIGVVPQDTFL---F 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 --TVLEmmilaaNLKLGKE----------LNLKQKLEVIDeilgmlRLKDTLNTM----AQKLSGGERKRLCIALELVNN 211
Cdd:COG1132 427 sgTIRE------NIRYGRPdatdeeveeaAKAAQAHEFIE------ALPDGYDTVvgerGVNLSGGQRQRIAIARALLKD 494
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 212 PPVIFLDEPTTGLDDLSSSQcI--ALLKVLAagGRTVIcSI-HTPSAkIfEMLDAVYVLAEGQCVYQG 276
Cdd:COG1132 495 PPILILDEATSALDTETEAL-IqeALERLMK--GRTTI-VIaHRLST-I-RNADRILVLDDGRIVEQG 556
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
75-239 |
7.50e-18 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 83.33 E-value: 7.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCeSGEILVNNSPrdmrvFRKMSR------------YIMQTDV 142
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT-SGDVIFNGQP-----MSKLSSaakaelrnqklgFIYQFHH 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 143 LDSQFTVLEMmiLAANLKLGKElNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTT 222
Cdd:PRK11629 98 LLPDFTALEN--VAMPLLIGKK-KPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTG 174
|
170
....*....|....*..
gi 24580545 223 GLDDLSSSQCIALLKVL 239
Cdd:PRK11629 175 NLDARNADSIFQLLGEL 191
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
69-275 |
8.20e-18 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 83.70 E-value: 8.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 69 ASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVFRKMSRYIMQT--D 141
Cdd:TIGR02769 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLekpaqGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDspS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 142 VLDSQFTVLEmmILAANLKLGKELNLKQKLEVIDEILGMLRLK-DTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEP 220
Cdd:TIGR02769 100 AVNPRMTVRQ--IIGEPLRHLTSLDESEQKARIAELLDMVGLRsEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 221 TTGLDDLSSSQCIALLKVL-AAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQ 275
Cdd:TIGR02769 178 VSNLDMVLQAVILELLRKLqQAFGTAYLFITHDLRL-VQSFCQRVAVMDKGQIVEE 232
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
69-239 |
8.45e-18 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 83.97 E-value: 8.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 69 ASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVFRKMSRYIMQTDV- 142
Cdd:PRK10419 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLespsqGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSIs 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 143 -LDSQFTVLEmmILAANLKLGKELNLKQKLEVIDEILGMLRLKDT-LNTMAQKLSGGERKRLCIALELVNNPPVIFLDEP 220
Cdd:PRK10419 101 aVNPRKTVRE--IIREPLRHLLSLDKAERLARASEMLRAVDLDDSvLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEA 178
|
170
....*....|....*....
gi 24580545 221 TTGLDDLSSSQCIALLKVL 239
Cdd:PRK10419 179 VSNLDLVLQAGVIRLLKKL 197
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
86-247 |
1.11e-17 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 83.24 E-value: 1.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 86 HELTAIIGPSGAGKTTLLNLLAGfGAVCESGEILVNNspRD-----------MRVFRKmsryiMQT-DVLDSQfTVLEMM 153
Cdd:COG4674 36 GELRVIIGPNGAGKTTLMDVITG-KTRPDSGSVLFGG--TDltgldeheiarLGIGRK-----FQKpTVFEEL-TVFENL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 154 ILAANLKLGKELNLKQKL-----EVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLS 228
Cdd:COG4674 107 ELALKGDRGVFASLFARLtaeerDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 186
|
170
....*....|....*....
gi 24580545 229 SSQCIALLKVLaAGGRTVI 247
Cdd:COG4674 187 TERTAELLKSL-AGKHSVV 204
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
8-289 |
1.17e-17 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 87.76 E-value: 1.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 8 KGSTTSQISSLQYSSDINADSLEPDQSEDFQTVLGLKYLPSW-PAVnlqfselCYVVPDQTNASKTKTILRRVNGMFHSH 86
Cdd:TIGR01257 884 EGCSTREERALEKTEPLTEEMEDPEHPEGINDSFFERELPGLvPGV-------CVKNLVKIFEPSGRPAVDRLNITFYEN 956
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNS--PRDMRVFRKMSRYIMQTDVLDSQFTVLEMMILAANLKlGKE 164
Cdd:TIGR01257 957 QITAFLGHNGAGKTTTLSILTGL-LPPTSGTVLVGGKdiETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK-GRS 1034
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 165 LNLKQ-KLEVIDEILGmlrLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLkVLAAGG 243
Cdd:TIGR01257 1035 WEEAQlEMEAMLEDTG---LHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL-LKYRSG 1110
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 24580545 244 RTVICSI-HTPSAKIfeMLDAVYVLAEGQCVYQGkgsniVP-FLKN-FG 289
Cdd:TIGR01257 1111 RTIIMSThHMDEADL--LGDRIAIISQGRLYCSG-----TPlFLKNcFG 1152
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
72-225 |
1.30e-17 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 85.00 E-value: 1.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 72 TKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEIL-----VNNSPRDMR----VFrkmsryimQTDV 142
Cdd:PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-ETPDSGRIMldgqdITHVPAENRhvntVF--------QSYA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 143 LDSQFTVLEMmiLAANLKLGKELNLKQKLEVIdEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTT 222
Cdd:PRK09452 97 LFPHMTVFEN--VAFGLRMQKTPAAEITPRVM-EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173
|
...
gi 24580545 223 GLD 225
Cdd:PRK09452 174 ALD 176
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
73-231 |
1.44e-17 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 82.90 E-value: 1.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFG----AVCESGEILVNN----SPR-DMRVFRKMSRYIMQtdvl 143
Cdd:PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNdlnpEVTITGSIVYNGhniySPRtDTVDLRKEIGMVFQ---- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 144 dsQFTVLEMMILAaNLKLGKELNLKQKLEVIDEIL-GMLR-------LKDTLNTMAQKLSGGERKRLCIALELVNNPPVI 215
Cdd:PRK14239 94 --QPNPFPMSIYE-NVVYGLRLKGIKDKQVLDEAVeKSLKgasiwdeVKDRLHDSALGLSGGQQQRVCIARVLATSPKII 170
|
170
....*....|....*.
gi 24580545 216 FLDEPTTGLDDLSSSQ 231
Cdd:PRK14239 171 LLDEPTSALDPISAGK 186
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
72-239 |
1.96e-17 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 82.39 E-value: 1.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 72 TKTILRRVNGMFHSHELTAIIGPSGAGKTTLL---N----LLAGFGAvceSGEILVNNsprdmrvfrkmsryimqTDVLD 144
Cdd:COG1117 23 DKQALKDINLDIPENKVTALIGPSGCGKSTLLrclNrmndLIPGARV---EGEILLDG-----------------EDIYD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 145 SQFTVLE-----MMI--------------LAANLKLGKELNlKQKLEVI-----------DEilgmlrLKDTLNTMAQKL 194
Cdd:COG1117 83 PDVDVVElrrrvGMVfqkpnpfpksiydnVAYGLRLHGIKS-KSELDEIveeslrkaalwDE------VKDRLKKSALGL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 24580545 195 SGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVL 239
Cdd:COG1117 156 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILEL 200
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
75-276 |
3.50e-17 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 81.12 E-value: 3.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNspRDMRVF--RKMSRYImqtdVLDSQFTVLEM 152
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-DSGRILIDG--HDVRDYtlASLRRQI----GLVSQDVFLFN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 153 MILAANLKLGKE----------LNLKQKLEVIDEilgmlrLKDTLNTM----AQKLSGGERKRLCIALELVNNPPVIFLD 218
Cdd:cd03251 90 DTVAENIAYGRPgatreeveeaARAANAHEFIME------LPEGYDTVigerGVKLSGGQRQRIAIARALLKDPPILILD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 219 EPTTGLDDLSSSQCIALLKVLAAgGRTVICSIHTPSAkiFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03251 164 EATSALDTESERLVQAALERLMK-NRTTFVIAHRLST--IENADRIVVLEDGKIVERG 218
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
86-277 |
3.88e-17 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 83.62 E-value: 3.88e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 86 HELTAIIGPSGAGKTTLLNLLAGFGAVCEsGEILVN----NSPRDmRVF-----RKMSrYIMQTDVLDSQFTVlemmilA 156
Cdd:TIGR02142 23 QGVTAIFGRSGSGKTTLIRLIAGLTRPDE-GEIVLNgrtlFDSRK-GIFlppekRRIG-YVFQEARLFPHLSV------R 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 157 ANLKLG-KELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIAL 235
Cdd:TIGR02142 94 GNLRYGmKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY 173
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24580545 236 LKVLAAGGRTVICSI-HTPSaKIFEMLDAVYVLAEGQCVYQGK 277
Cdd:TIGR02142 174 LERLHAEFGIPILYVsHSLQ-EVLRLADRVVVLEDGRVAAAGP 215
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
87-225 |
5.24e-17 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 82.41 E-value: 5.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTL----LNLLAGFGAVceSGEILVNN------SPRDMRVFR--KMSrYIMQ--TDVLDSQFTVLEm 152
Cdd:COG0444 32 ETLGLVGESGSGKSTLaraiLGLLPPPGIT--SGEILFDGedllklSEKELRKIRgrEIQ-MIFQdpMTSLNPVMTVGD- 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 153 mILAANLKLGKELNLKQKLEVIDEILGMLRLKDTLNTMAQ---KLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:COG0444 108 -QIAEPLRIHGGLSKAEARERAIELLERVGLPDPERRLDRyphELSGGMRQRVMIARALALEPKLLIADEPTTALD 182
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
75-276 |
6.60e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 80.73 E-value: 6.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLN----LLAGFGAVCESGEILVNNS---PRDMRVFRKMSRYIMQTDVLDSQF 147
Cdd:PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRvfnrLIELYPEARVSGEVYLDGQdifKMDVIELRRRVQMVFQIPNPIPNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEmmilaaNLKLGKELN--LKQKLEVIDEILGMLR-------LKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLD 218
Cdd:PRK14247 98 SIFE------NVALGLKLNrlVKSKKELQERVRWALEkaqlwdeVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 219 EPTTGLDDLSSSQCIALLKVLAAgGRTVICSIHTPsAKIFEMLDAVYVLAEGQCVYQG 276
Cdd:PRK14247 172 EPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWG 227
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
87-251 |
9.14e-17 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 81.67 E-value: 9.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNsPRDMRvfrkmsRYIM---QTDVLDSQFTVLEMMILAAN 158
Cdd:TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLlrptsGTARVAGYDVVRE-PRKVR------RSIGivpQYASVDEDLTGRENLEMMGR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 159 LkLGkeLNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKV 238
Cdd:TIGR01188 93 L-YG--LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA 169
|
170
....*....|...
gi 24580545 239 LAAGGRTVICSIH 251
Cdd:TIGR01188 170 LKEEGVTILLTTH 182
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
73-276 |
9.67e-17 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 80.59 E-value: 9.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNN------SPRDMrvfrKMSRYIM-QTDVLDS 145
Cdd:PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-DSGEVRLNGrpladwSPAEL----ARRRAVLpQHSSLSF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 146 QFTVLEM--MILAANlklgkELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELV------NNPPVIFL 217
Cdd:PRK13548 90 PFTVEEVvaMGRAPH-----GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwepdGPPRWLLL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 218 DEPTTGLDDLSSSQCIALLKVLA-AGGRTVICSIHTpsakifemL-------DAVYVLAEGQCVYQG 276
Cdd:PRK13548 165 DEPTSALDLAHQHHVLRLARQLAhERGLAVIVVLHD--------LnlaaryaDRIVLLHQGRLVADG 223
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
87-251 |
1.11e-16 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 79.11 E-value: 1.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLL---NLLAGFgavcESGEIL-----VNNSPRDMRVFRKMSRYIMQTDVLDSQFTVLEMMILAan 158
Cdd:cd03262 27 EVVVIIGPSGSGKSTLLrciNLLEEP----DSGTIIidglkLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA-- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 159 LKLGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKV 238
Cdd:cd03262 101 PIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKD 180
|
170
....*....|...
gi 24580545 239 LAAGGRTVICSIH 251
Cdd:cd03262 181 LAEEGMTMVVVTH 193
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
71-225 |
1.45e-16 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 78.84 E-value: 1.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNspRDMRVFRKMSRYI---MQTDVLDSQF 147
Cdd:cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-EEPTSGRIYIGG--RDVTDLPPKDRDIamvFQNYALYPHM 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEMMilAANLKLGKelnlkQKLEVIDE----ILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTG 223
Cdd:cd03301 88 TVYDNI--AFGLKLRK-----VPKDEIDErvreVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160
|
..
gi 24580545 224 LD 225
Cdd:cd03301 161 LD 162
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
72-276 |
1.51e-16 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 79.65 E-value: 1.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 72 TKTILRRVNGMFHSHELTAIIGPSGAGKTTLL---NLLAGFgavcESGEILVNN-----SPRDMRVFRKMSRYIMQtdvl 143
Cdd:COG1126 13 DLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLrciNLLEEP----DSGTITVDGedltdSKKDINKLRRKVGMVFQ---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 144 dsQF------TVLEMMILA--ANLKLGKElnlkqklEVID---EILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNP 212
Cdd:COG1126 85 --QFnlfphlTVLENVTLApiKVKKMSKA-------EAEEramELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 213 PVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHtpsakifEM------LDAVYVLAEGQCVYQG 276
Cdd:COG1126 156 KVMLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVVVTH-------EMgfarevADRVVFMDGGRIVEEG 218
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
87-251 |
2.08e-16 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 79.29 E-value: 2.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTL---LNLLAgfgaVCESGEILVNN---------SPRDMRVFRKMSRYIMQTDVLDSQFTVLEMMI 154
Cdd:PRK11124 29 ETLVLLGPSGAGKSSLlrvLNLLE----MPRSGTLNIAGnhfdfsktpSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 155 LAANLKLGkeLNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIA 234
Cdd:PRK11124 105 EAPCRVLG--LSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
|
170
....*....|....*..
gi 24580545 235 LLKVLAAGGRTVICSIH 251
Cdd:PRK11124 183 IIRELAETGITQVIVTH 199
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
87-276 |
2.34e-16 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 82.84 E-value: 2.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP-RDMRVfRKMSRYIMQTdvldSQFTVLEMMILAANLKLGKEL 165
Cdd:TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEP-DSGQILLDGHDlADYTL-ASLRRQVALV----SQDVVLFNDTIANNIAYGRTE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 166 NLKQklEVIDEILGMLRLKDTLNTM-----------AQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIA 234
Cdd:TIGR02203 433 QADR--AEIERALAAAYAQDFVDKLplgldtpigenGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQA 510
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 24580545 235 LLKVLAAgGRTVICSIHTPSAkiFEMLDAVYVLAEGQCVYQG 276
Cdd:TIGR02203 511 ALERLMQ-GRTTLVIAHRLST--IEKADRIVVMDDGRIVERG 549
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
87-251 |
2.66e-16 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 78.90 E-value: 2.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLL---NLLAgfgaVCESGEILVNN---------SPRDMRVFRKMSRYIMQTDVLDSQFTVLEMMI 154
Cdd:COG4161 29 ETLVLLGPSGAGKSSLLrvlNLLE----TPDSGQLNIAGhqfdfsqkpSEKAIRLLRQKVGMVFQQYNLWPHLTVMENLI 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 155 LAANLKLGkeLNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIA 234
Cdd:COG4161 105 EAPCKVLG--LSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQVVE 182
|
170
....*....|....*..
gi 24580545 235 LLKVLAAGGRTVICSIH 251
Cdd:COG4161 183 IIRELSQTGITQVIVTH 199
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
68-225 |
2.80e-16 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 80.89 E-value: 2.80e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 68 NASKT---KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgavcE---SGEIL-----VNNSP---RDMR-VFrk 132
Cdd:COG3839 8 NVSKSyggVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGL----EdptSGEILiggrdVTDLPpkdRNIAmVF-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 133 msryimQTDVLDSQFTVLEMMilAANLKLGKeLNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNP 212
Cdd:COG3839 82 ------QSYALYPHMTVYENI--AFPLKLRK-VPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREP 152
|
170
....*....|...
gi 24580545 213 PVIFLDEPTTGLD 225
Cdd:COG3839 153 KVFLLDEPLSNLD 165
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
58-253 |
3.54e-16 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 82.46 E-value: 3.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 58 ELCYVVPDQTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLaGFGAVCESGEILVN-------NSPRDMRVF 130
Cdd:PRK10535 6 ELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVAgqdvatlDADALAQLR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 131 RKMSRYIMQTDVLDSQFTVLE-MMILAANLKLGKelnlKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELV 209
Cdd:PRK10535 85 REHFGFIFQRYHLLSHLTAAQnVEVPAVYAGLER----KQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 24580545 210 NNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTP 253
Cdd:PRK10535 161 NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
87-277 |
8.03e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 78.98 E-value: 8.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNnsprDMRVFRKMSRYIMQT------------D--VLDSqFTvlem 152
Cdd:COG4586 49 EIVGFIGPNGAGKSTTIKMLTGI-LVPTSGEVRVL----GYVPFKRRKEFARRIgvvfgqrsqlwwDlpAIDS-FR---- 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 153 mILAANLKLGKELnLKQKLEVIDEILGmlrLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQC 232
Cdd:COG4586 119 -LLKAIYRIPDAE-YKKRLDELVELLD---LGELLDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAI 193
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24580545 233 IALLKVL-AAGGRTVICSIHTpSAKIFEMLDAVYVLAEGQCVYQGK 277
Cdd:COG4586 194 REFLKEYnRERGTTILLTSHD-MDDIEALCDRVIVIDHGRIIYDGS 238
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
87-277 |
1.20e-15 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 77.28 E-value: 1.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAvcESGEILVNNSPRDMRVFRKMSR---YIMQTDVLDSQFTVLEMmiLAanLKLGK 163
Cdd:PRK03695 23 EILHLVGPNGAGKSTLLARMAGLLP--GSGSIQFAGQPLEAWSAAELARhraYLSQQQTPPFAMPVFQY--LT--LHQPD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 164 ELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGE--RKRL---CIALELVNNP--PVIFLDEPTTGLDDLSSSQCIALL 236
Cdd:PRK03695 97 KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEwqRVRLaavVLQVWPDINPagQLLLLDEPMNSLDVAQQAALDRLL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 24580545 237 KVLAAGGRTVICSIH----TpsakiFEMLDAVYVLAEGQCVYQGK 277
Cdd:PRK03695 177 SELCQQGIAVVMSSHdlnhT-----LRHADRVWLLKQGKLLASGR 216
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
89-241 |
1.26e-15 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 78.99 E-value: 1.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 89 TAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSP---RDMRVFRKMSR----YIMQTDVLDSQFTVlemmilAANLKL 161
Cdd:COG4148 28 TALFGPSGSGKTTLLRAIAGL-ERPDSGRIRLGGEVlqdSARGIFLPPHRrrigYVFQEARLFPHLSV------RGNLLY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 162 G-KELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLA 240
Cdd:COG4148 101 GrKRAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILPYLERLR 180
|
.
gi 24580545 241 A 241
Cdd:COG4148 181 D 181
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
87-253 |
1.33e-15 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 75.99 E-value: 1.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDmRVFRKMSR---YIMQTDVLDSQFTVLEmmilaaNLKLGK 163
Cdd:cd03231 27 EALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLNGGPLD-FQRDSIARgllYLGHAPGIKTTLSVLE------NLRFWH 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 164 ELNLKqklEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGG 243
Cdd:cd03231 99 ADHSD---EQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175
|
170
....*....|
gi 24580545 244 RTVICSIHTP 253
Cdd:cd03231 176 GMVVLTTHQD 185
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
74-251 |
1.94e-15 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 76.85 E-value: 1.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 74 TILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCeSGEILVNNSPRDMRVFRKMSRYIMQTDVLDSQFTVLE-- 151
Cdd:PRK15056 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVed 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 152 --MMILAANLKLGKELNLKQKlEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSS 229
Cdd:PRK15056 100 vvMMGRYGHMGWLRRAKKRDR-QIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178
|
170 180
....*....|....*....|..
gi 24580545 230 SQCIALLKVLAAGGRTVICSIH 251
Cdd:PRK15056 179 ARIISLLRELRDEGKTMLVSTH 200
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
76-277 |
2.08e-15 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 75.97 E-value: 2.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 76 LRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVFRKMSryimqtdvLDSQFTVL 150
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLaqptsGGVILEGKQITEPGPDRMVVFQNYS--------LLPWLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 151 EMMILAANLKLgKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSS 230
Cdd:TIGR01184 73 ENIALAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 24580545 231 QCI-ALLKVLAAGGRTVICSIHTPSAKIFeMLDAVYVLAEGQCVYQGK 277
Cdd:TIGR01184 152 NLQeELMQIWEEHRVTVLMVTHDVDEALL-LSDRVVMLTNGPAANIGQ 198
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
67-282 |
2.20e-15 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 76.28 E-value: 2.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 67 TNASKT---KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP----RDMRVFRKMSryIM- 138
Cdd:COG4604 5 KNVSKRyggKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPP-DSGEVLVDGLDvattPSRELAKRLA--ILr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 139 QTDVLDSQFTVLEmmilaanL-----------KLGKElnlkqKLEVIDEILGMLRLKDtlntMAQK----LSGGERKRLC 203
Cdd:COG4604 82 QENHINSRLTVRE-------LvafgrfpyskgRLTAE-----DREIIDEAIAYLDLED----LADRyldeLSGGQRQRAF 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 204 IALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAG-GRTVICSIHtpsakifemlD----AVY-----VLAEGQCV 273
Cdd:COG4604 146 IAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADElGKTVVIVLH----------DinfaSCYadhivAMKDGRVV 215
|
....*....
gi 24580545 274 YQGKGSNIV 282
Cdd:COG4604 216 AQGTPEEII 224
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
76-225 |
2.48e-15 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 75.84 E-value: 2.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 76 LRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVfrkmsRYIMQTDVLDSQFTVL 150
Cdd:cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLerpdsGTILFGGEDATDVPVQERNV-----GFVFQHYALFRHMTVF 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 151 EMmiLAANLKLGKELNLKQKLEV---IDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:cd03296 93 DN--VAFGLRVKPRSERPPEAEIrakVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
74-273 |
2.90e-15 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 73.62 E-value: 2.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 74 TILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVN------NSPRDMRvfrkmsryimqtdvldsqf 147
Cdd:cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDgkevsfASPRDAR------------------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 tvlemmilaanlKLGkelnlkqklevideIlgmlrlkdtlnTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:cd03216 74 ------------RAG--------------I-----------AMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPA 116
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24580545 228 SSSQCIALLKVLAAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQCV 273
Cdd:cd03216 117 EVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVV 161
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
75-276 |
3.63e-15 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 79.40 E-value: 3.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPR---DMRVFRKMSRYIMQTDVLDSQfTVLE 151
Cdd:TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-RSGEILLNGFSLkdiDRHTLRQFINYLPQEPYIFSG-SILE 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 152 MMILAANLKLGKElNLKQKL---EVIDEILGM-LRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:TIGR01193 567 NLLLGAKENVSQD-EIWAACeiaEIKDDIENMpLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24580545 228 SSSQCIAllKVLAAGGRTVICSIHTPSakIFEMLDAVYVLAEGQCVYQG 276
Cdd:TIGR01193 646 TEKKIVN--NLLNLQDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQG 690
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
62-276 |
4.21e-15 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 75.56 E-value: 4.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 62 VVPDQTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLL---NLLAgfgaVCESGEILV-----------NNSPRDM 127
Cdd:PRK11264 5 EVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLrciNLLE----QPEAGTIRVgditidtarslSQQKGLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 128 RVFRKMSRYIMQTDVLDSQFTVLEMMI----------LAANLKLGKELnlkqklevideiLGMLRLKDTLNTMAQKLSGG 197
Cdd:PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIegpvivkgepKEEATARAREL------------LAKVGLAGKETSYPRRLSGG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 198 ERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPS-AKifEMLDAVYVLAEGQCVYQG 276
Cdd:PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSfAR--DVADRAIFMDQGRIVEQG 226
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
74-253 |
9.02e-15 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 73.55 E-value: 9.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 74 TILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNN--SPRDMRVFRKMSRYIMQTDVLDSQFTVLE 151
Cdd:TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL-LRPDSGEVRWNGtpLAEQRDEPHENILYLGHLPGLKPELSALE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 152 MMILAANLKLGKELNLKQKLEVIDeilgmlrLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQ 231
Cdd:TIGR01189 93 NLHFWAAIHGGAQRTIEDALAAVG-------LTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVAL 165
|
170 180
....*....|....*....|..
gi 24580545 232 CIALLKVLAAGGRTVICSIHTP 253
Cdd:TIGR01189 166 LAGLLRAHLARGGIVLLTTHQD 187
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
54-276 |
1.32e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 74.39 E-value: 1.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVPDQTNAsktktiLRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILvnnSPRDMR 128
Cdd:PRK13647 5 IEVEDLHFRYKDGTKA------LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIylpqrGRVKVMGREV---NAENEK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 129 VFRKMSRYIMQtDVLDSQF--TVLEMMILAA-NLKLGKElnlkQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIA 205
Cdd:PRK13647 76 WVRSKVGLVFQ-DPDDQVFssTVWDDVAFGPvNMGLDKD----EVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24580545 206 LELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAKIfEMLDAVYVLAEGQCVYQG 276
Cdd:PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA-EWADQVIVLKEGRVLAEG 220
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
44-300 |
2.16e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 73.53 E-value: 2.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 44 KYLPSWPAVNLQFSelcyvvpdqtnaSKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVceSGEILV--- 120
Cdd:PRK14258 3 KLIPAIKVNNLSFY------------YDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL--ESEVRVegr 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 121 ----NNSPRDMRVfrKMSRYIMQTDVLDSQFTVLEMMILAaNLKLG-KELNLKQKLEVIDEILGMLR-------LKDTLN 188
Cdd:PRK14258 69 veffNQNIYERRV--NLNRLRRQVSMVHPKPNLFPMSVYD-NVAYGvKIVGWRPKLEIDDIVESALKdadlwdeIKHKIH 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 189 TMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGR-TVICSIHTpsakifemLDAVYVL 267
Cdd:PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSElTMVIVSHN--------LHQVSRL 217
|
250 260 270
....*....|....*....|....*....|...
gi 24580545 268 AEGQCVYQGKGSNIVPFLKnFGLCCPITYNPAD 300
Cdd:PRK14258 218 SDFTAFFKGNENRIGQLVE-FGLTKKIFNSPHD 249
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
87-277 |
3.53e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 73.60 E-value: 3.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTL----LNLLAgfgavCESGEILVNNSPRDMRVFR-------------KMsryimqtdvldsqfTV 149
Cdd:COG4152 28 EIFGLLGPNGAGKTTTiriiLGILA-----PDSGEVLWDGEPLDPEDRRrigylpeerglypKM--------------KV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 150 LEMMILAANLKlGkeLNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSS 229
Cdd:COG4152 89 GEQLVYLARLK-G--LSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFSGLDPVNV 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24580545 230 SQCIALLKVLAAGGRTVICSIHT-PSAKifEMLDAVYVLAEGQCVYQGK 277
Cdd:COG4152 166 ELLKDVIRELAAKGTTVIFSSHQmELVE--ELCDRIVIINKGRKVLSGS 212
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
74-236 |
3.59e-14 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 72.47 E-value: 3.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 74 TILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP-----RDMR-VFRkmSR---YIMQTDVLD 144
Cdd:COG4181 26 TILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRP-TSGTVRLAGQDlfaldEDARaRLR--ARhvgFVFQSFQLL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 145 SQFTVLE--MMILaanlklgkEL-NLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPT 221
Cdd:COG4181 103 PTLTALEnvMLPL--------ELaGRRDARARARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEPAILFADEPT 174
|
170
....*....|....*
gi 24580545 222 TGLDDLSSSQCIALL 236
Cdd:COG4181 175 GNLDAATGEQIIDLL 189
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
73-251 |
4.06e-14 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 72.81 E-value: 4.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRD----MR--VFrkmsryimQTDVLDSQ 146
Cdd:PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-QHGSITLDGKPVEgpgaERgvVF--------QNEGLLPW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 147 FTVLemmilaANLKLGKEL---NLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTG 223
Cdd:PRK11248 85 RNVQ------DNVAFGLQLagvEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158
|
170 180
....*....|....*....|....*....
gi 24580545 224 LDDLSSSQCIA-LLKVLAAGGRTVICSIH 251
Cdd:PRK11248 159 LDAFTREQMQTlLLKLWQETGKQVLLITH 187
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
87-247 |
4.66e-14 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 75.06 E-value: 4.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVN------NSPRD-------MrVFrkmsryimQ--TDVlDSqFTVLE 151
Cdd:COG3845 32 EIHALLGENGAGKSTLMKILYGL-YQPDSGEILIDgkpvriRSPRDaialgigM-VH--------QhfMLV-PN-LTVAE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 152 MMILAANLKLGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGL-----DD 226
Cdd:COG3845 100 NIVLGLEPTKGGRLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKALYRGARILILDEPTAVLtpqeaDE 179
|
170 180
....*....|....*....|.
gi 24580545 227 LsssqcIALLKVLAAGGRTVI 247
Cdd:COG3845 180 L-----FEILRRLAAEGKSII 195
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
89-300 |
4.92e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 73.23 E-value: 4.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 89 TAIIGPSGAGKTTLLNLLAGF-----GAVcESGEILVNNSPR--DMRVFRKMSRYIMQTDvlDSQF---TVLEMMILAA- 157
Cdd:PRK13643 35 TALIGHTGSGKSTLLQHLNGLlqpteGKV-TVGDIVVSSTSKqkEIKPVRKKVGVVFQFP--ESQLfeeTVLKDVAFGPq 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 158 NLKLGKElnlkQKLEVIDEILGMLRL-KDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALL 236
Cdd:PRK13643 112 NFGIPKE----KAEKIAAEKLEMVGLaDEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLF 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 237 KVLAAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQGKGSNI---VPFLKNFGLCCPITYNPAD 300
Cdd:PRK13643 188 ESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVfqeVDFLKAHELGVPKATHFAD 253
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
75-232 |
5.00e-14 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 71.73 E-value: 5.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDMRvfrkMSRYIMQTDVLDSQFTVLEMMI 154
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-QGGQVLLDGKPISQY----EHKYLHSKVSLVGQEPVLFARS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 155 LAANLKLG-------KELNLKQKLEVIDEILGMLRLKDT-LNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDD 226
Cdd:cd03248 104 LQDNIAYGlqscsfeCVKEAAQKAHAHSFISELASGYDTeVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDA 183
|
....*.
gi 24580545 227 LSSSQC 232
Cdd:cd03248 184 ESEQQV 189
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
67-225 |
7.76e-14 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 74.33 E-value: 7.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 67 TNASKT---KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGfgavcE----SGEILVNNsprdmRVfrKMSRYIMQ 139
Cdd:COG0488 319 EGLSKSygdKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAG-----ElepdSGTVKLGE-----TV--KIGYFDQH 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 140 TDVLDSQFTVLEMMILAAnlKLGKELNLKQKLEvideilGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDE 219
Cdd:COG0488 387 QEELDPDKTVLDELRDGA--PGGTEQEVRGYLG------RFLFSGDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDE 458
|
....*.
gi 24580545 220 PTTGLD 225
Cdd:COG0488 459 PTNHLD 464
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
83-276 |
8.26e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 72.96 E-value: 8.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 83 FHSHELTAIIGPSGAGKTTLLNLLAGF---------------GAVCESGEILVNNSPRDMRVFRKMSRYI-MQTDVLDSQ 146
Cdd:PRK13631 49 FEKNKIYFIIGNSGSGKSTLVTHFNGLikskygtiqvgdiyiGDKKNNHELITNPYSKKIKNFKELRRRVsMVFQFPEYQ 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 147 F--TVLEMMILAANLKLGKELNLKQKLEVIdeILGMLRLKDT-LNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTG 223
Cdd:PRK13631 129 LfkDTIEKDIMFGPVALGVKKSEAKKLAKF--YLNKMGLDDSyLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAG 206
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 24580545 224 LDDLSSSQCIALLKVLAAGGRTVICSIHTpSAKIFEMLDAVYVLAEGQCVYQG 276
Cdd:PRK13631 207 LDPKGEHEMMQLILDAKANNKTVFVITHT-MEHVLEVADEVIVMDKGKILKTG 258
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
87-225 |
9.58e-14 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 72.87 E-value: 9.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFgavcE---SGEILVNN-------SPRDMRV---------FRKMsryimqtdvldsqf 147
Cdd:COG1118 29 ELVALLGPSGSGKTTLLRIIAGL----EtpdSGRIVLNGrdlftnlPPRERRVgfvfqhyalFPHM-------------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEmmilaaNLKLG---KELNLKQKLEVIDEILGMLRLKDtlntMAQK----LSGGERKRLCIALELVNNPPVIFLDEP 220
Cdd:COG1118 91 TVAE------NIAFGlrvRPPSKAEIRARVEELLELVQLEG----LADRypsqLSGGQRQRVALARALAVEPEVLLLDEP 160
|
....*
gi 24580545 221 TTGLD 225
Cdd:COG1118 161 FGALD 165
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
87-281 |
1.77e-13 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 73.74 E-value: 1.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKT----TLLNLLAGFGAVCESGEILVNNSPRDMRVFRKMSRYIMQ----TDV----------LDSQFT 148
Cdd:PRK10261 43 ETLAIVGESGSGKSvtalALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRhvrgADMamifqepmtsLNPVFT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 149 VLEMmiLAANLKLGKELNLKQKLEVIDEILGMLRLKDT---LNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK10261 123 VGEQ--IAESIRLHQGASREEAMVEAKRMLDQVRIPEAqtiLSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 226 DLSSSQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAEGQCVYQGKGSNI 281
Cdd:PRK10261 201 VTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
89-293 |
2.07e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 70.93 E-value: 2.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 89 TAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSP-RDMRVFRKMSRYIMQtdVLDSQF---TVLEMMILAA-N 158
Cdd:PRK13649 36 TAFIGHTGSGKSTIMQLLNGLhvptqGSVRVDDTLITSTSKnKDIKQIRKKVGLVFQ--FPESQLfeeTVLKDVAFGPqN 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 159 LKLGKElnlkQKLEVIDEILGMLRLKDTL-NTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLK 237
Cdd:PRK13649 114 FGVSQE----EAEALAREKLALVGISESLfEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFK 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 24580545 238 VLAAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQGKGSNI---VPFLKNFGLCCP 293
Cdd:PRK13649 190 KLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDIfqdVDFLEEKQLGVP 247
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
89-281 |
2.46e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 70.55 E-value: 2.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 89 TAIIGPSGAGKTTLLNLLAGFGAVCEsGEILVNNSPRDMRVFRKMSRYI---MQTDvlDSQFTvleMMILAANLKLGKEL 165
Cdd:PRK13648 38 TSIVGHNGSGKSTIAKLMIGIEKVKS-GEIFYNNQAITDDNFEKLRKHIgivFQNP--DNQFV---GSIVKYDVAFGLEN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 166 NL---KQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAG 242
Cdd:PRK13648 112 HAvpyDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE 191
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 24580545 243 GRTVICSIhtpSAKIFEMLDAVY--VLAEGQCVYQGKGSNI 281
Cdd:PRK13648 192 HNITIISI---THDLSEAMEADHviVMNKGTVYKEGTPTEI 229
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
87-237 |
2.57e-13 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 71.65 E-value: 2.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLL---NLLagfgavcE---SGEILVNN------SPRDMRVFRK---MsryIMQTDVLDSQFTVLE 151
Cdd:COG1135 32 EIFGIIGYSGAGKSTLIrciNLL-------ErptSGSVLVDGvdltalSERELRAARRkigM---IFQHFNLLSSRTVAE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 152 mmilaaN----LKLGKeLNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:COG1135 102 ------NvalpLEIAG-VPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
|
170
....*....|
gi 24580545 228 SSSQCIALLK 237
Cdd:COG1135 175 TTRSILDLLK 184
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
43-251 |
3.09e-13 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 70.20 E-value: 3.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 43 LKYLPSWPAVNLQFSELCYVVPDqtnasktKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLaGFGAVCESGEILVNN 122
Cdd:PRK10575 1 MQEYTNHSDTTFALRNVSFRVPG-------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPSEGEILLDA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 123 SPR---DMRVFRKMSRYIMQTDVLDSQFTVLEMMILA------ANLKLGKElnlkqKLEVIDEILGMLRLKDTLNTMAQK 193
Cdd:PRK10575 73 QPLeswSSKAFARKVAYLPQQLPAAEGMTVRELVAIGrypwhgALGRFGAA-----DREKVEEAISLVGLKPLAHRLVDS 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 24580545 194 LSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLA-AGGRTVICSIH 251
Cdd:PRK10575 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSqERGLTVIAVLH 206
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
87-288 |
3.26e-13 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 69.64 E-value: 3.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLagfGAVCE--SGEILVNN------SPRDMRvfRKMSrYIMQTDVLDSQFTVLEMMILAAN 158
Cdd:cd03295 28 EFLVLIGPSGSGKTTTMKMI---NRLIEptSGEIFIDGedireqDPVELR--RKIG-YVIQQIGLFPHMTVEENIALVPK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 159 LKLGKElnlKQKLEVIDEILGMLRLKDT--LNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALL 236
Cdd:cd03295 102 LLKWPK---EKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24580545 237 KVL-AAGGRTVICSIHtpsaKIFEML---DAVYVLAEGQCVYQGKGSNIV-----PFLKNF 288
Cdd:cd03295 179 KRLqQELGKTIVFVTH----DIDEAFrlaDRIAIMKNGEIVQVGTPDEILrspanDFVAEF 235
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
68-251 |
3.49e-13 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 69.74 E-value: 3.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 68 NASK---TKTILRRVNGMFHSHELTAIIGPSGAGKTTLL---NLLAgfgaVCESGEILVN----NSPR-DMRVFRKMSRY 136
Cdd:PRK09493 6 NVSKhfgPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLrciNKLE----EITSGDLIVDglkvNDPKvDERLIRQEAGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 137 IMQTDVLDSQFTVLEmmilaaNLKLG----KELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNP 212
Cdd:PRK09493 82 VFQQFYLFPHLTALE------NVMFGplrvRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP 155
|
170 180 190
....*....|....*....|....*....|....*....
gi 24580545 213 PVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIH 251
Cdd:PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTH 194
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
45-277 |
5.04e-13 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 72.45 E-value: 5.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 45 YLPSWPAVNLQFSELCYVVPDQTNasktKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSP 124
Cdd:TIGR00958 470 LAPLNLEGLIEFQDVSFSYPNRPD----VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-YQPTGGQVLLDGVP 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 125 ---RDMRVFRKMSRYIMQTDVLDS-----------QFTVLEMMILAAnlklgkelnlkQKLEVIDEILGMLRLKDT-LNT 189
Cdd:TIGR00958 545 lvqYDHHYLHRQVALVGQEPVLFSgsvreniayglTDTPDEEIMAAA-----------KAANAHDFIMEFPNGYDTeVGE 613
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 190 MAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDdlssSQCIALLKVL-AAGGRTVICSIHTPSakIFEMLDAVYVLA 268
Cdd:TIGR00958 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD----AECEQLLQESrSRASRTVLLIAHRLS--TVERADQILVLK 687
|
....*....
gi 24580545 269 EGQCVYQGK 277
Cdd:TIGR00958 688 KGSVVEMGT 696
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
74-270 |
7.83e-13 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 70.64 E-value: 7.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 74 TILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSPRDMRVFRKMSRYIM---QTDVLDSQFTVL 150
Cdd:PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT-LTPTAGTVLVAGDDVEALSARAASRRVAsvpQDTSLSFEFDVR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 151 EMMILAANLKLGK--------ELNLKQKLEVIdeilGMLRLKDTLNTmaqKLSGGERKRLCIALELVNNPPVIFLDEPTT 222
Cdd:PRK09536 96 QVVEMGRTPHRSRfdtwtetdRAAVERAMERT----GVAQFADRPVT---SLSGGERQRVLLARALAQATPVLLLDEPTA 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 24580545 223 GLDDLSSSQCIALLKVLAAGGRTVICSIHTpsakiFEM----LDAVYVLAEG 270
Cdd:PRK09536 169 SLDINHQVRTLELVRRLVDDGKTAVAAIHD-----LDLaaryCDELVLLADG 215
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
26-276 |
8.04e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 71.41 E-value: 8.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 26 ADSLEPD-QSEDFQTVLGLKYLPSWPAVNLQFSELCYVVPDqtnaskTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLN 104
Cdd:PRK11174 321 AESLVTFlETPLAHPQQGEKELASNDPVTIEAEDLEILSPD------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLN 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 105 LLAGFGAVceSGEILVNN---SPRDMRVFRKMSRYIMQTDVLDSQfTVLEmmilaaNLKLGK----ELNLKQKLEV--ID 175
Cdd:PRK11174 395 ALLGFLPY--QGSLKINGielRELDPESWRKHLSWVGQNPQLPHG-TLRD------NVLLGNpdasDEQLQQALENawVS 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 176 EILGmlRLKDTLNTM----AQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVlAAGGRTVICSIH 251
Cdd:PRK11174 466 EFLP--LLPQGLDTPigdqAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA-ASRRQTTLMVTH 542
|
250 260
....*....|....*....|....*
gi 24580545 252 TPSAkiFEMLDAVYVLAEGQCVYQG 276
Cdd:PRK11174 543 QLED--LAQWDQIWVMQDGQIVQQG 565
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
87-276 |
8.48e-13 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 69.02 E-value: 8.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVN--NSPRDMR-----VFRKMSrYIMQTDVLDSQFTVLEMMI--LAA 157
Cdd:PRK11831 34 KITAIMGPSGIGKTTLLRLIGGQIAP-DHGEILFDgeNIPAMSRsrlytVRKRMS-MLFQSGALFTDMNVFDNVAypLRE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 158 NLKLGKEL---NLKQKLEVIDeilgmlrLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIA 234
Cdd:PRK11831 112 HTQLPAPLlhsTVMMKLEAVG-------LRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 24580545 235 LLKVL--AAGGRTVICSIHTPsaKIFEMLDAVYVLAEGQCVYQG 276
Cdd:PRK11831 185 LISELnsALGVTCVVVSHDVP--EVLSIADHAYIVADKKIVAHG 226
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
73-276 |
8.65e-13 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 67.55 E-value: 8.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-GAVCESGEILVNNsprdmrvfrkmsryimqTDVLDsqftvLE 151
Cdd:cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpKYEVTEGEILFKG-----------------EDITD-----LP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 152 MMILAanlKLGkeLNLKQKLEVidEILGmLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQ 231
Cdd:cd03217 71 PEERA---RLG--IFLAFQYPP--EIPG-VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRL 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 24580545 232 CIALLKVLAAGGRTVICSIHTpsAKIFEML--DAVYVLAEGQCVYQG 276
Cdd:cd03217 143 VAEVINKLREEGKSVLIITHY--QRLLDYIkpDRVHVLYDGRIVKSG 187
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
87-247 |
1.11e-12 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 67.84 E-value: 1.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGfGAVCESGEILVNN----------SPRDM-RVFRKMSRYImqtdvldSQF-------T 148
Cdd:COG4778 38 ECVALTGPSGAGKSTLLKCIYG-NYLPDSGSILVRHdggwvdlaqaSPREIlALRRRTIGYV-------SQFlrviprvS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 149 VLEMMILAAnLKLGKELnlKQKLEVIDEILGMLRLKDTL-----NTmaqkLSGGERKRLCIALELVNNPPVIFLDEPTTG 223
Cdd:COG4778 110 ALDVVAEPL-LERGVDR--EEARARARELLARLNLPERLwdlppAT----FSGGEQQRVNIARGFIADPPLLLLDEPTAS 182
|
170 180
....*....|....*....|....
gi 24580545 224 LDDLSSSQCIALLKVLAAGGRTVI 247
Cdd:COG4778 183 LDAANRAVVVELIEEAKARGTAII 206
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
67-225 |
1.28e-12 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 68.57 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 67 TNASKT--------KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNspRD---MRVFRKmSR 135
Cdd:COG1101 5 KNLSKTfnpgtvneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPP-DSGSILIDG--KDvtkLPEYKR-AK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 136 YI---MQtDVLD---SQFTVLEMMILAAN------LKLGKelnLKQKLEVIDEILGMLR--LKDTLNTMAQKLSGGERKR 201
Cdd:COG1101 81 YIgrvFQ-DPMMgtaPSMTIEENLALAYRrgkrrgLRRGL---TKKRRELFRELLATLGlgLENRLDTKVGLLSGGQRQA 156
|
170 180
....*....|....*....|....
gi 24580545 202 LCIALELVNNPPVIFLDEPTTGLD 225
Cdd:COG1101 157 LSLLMATLTKPKLLLLDEHTAALD 180
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
73-276 |
1.37e-12 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 70.50 E-value: 1.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGmfHSHELTAI------------IGPSGAGKTT----LLNLLAGFGAVCESGEILVNNSPRDMRVFRKMSRY 136
Cdd:PRK15134 289 KGILKRTVD--HNVVVKNIsftlrpgetlglVGESGSGKSTtglaLLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQV 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 137 IMQ--TDVLDSQFTVLEmmILAANLKL-GKELNLKQKLEVIDEILGMLRLK-DTLNTMAQKLSGGERKRLCIALELVNNP 212
Cdd:PRK15134 367 VFQdpNSSLNPRLNVLQ--IIEEGLRVhQPTLSAAQREQQVIAVMEEVGLDpETRHRYPAEFSGGQRQRIAIARALILKP 444
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24580545 213 PVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAEGQCVYQG 276
Cdd:PRK15134 445 SLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
73-276 |
2.04e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 68.20 E-value: 2.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCE----SGEILVNNSP----RDMRVFRKMSRYIMQTDvld 144
Cdd:PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSgyrySGDVLLGGRSifnyRDVLEFRRRVGMLFQRP--- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 145 SQFTVLEMMILAANLKLGKELNLKQKLEVIDEILGMLRL----KDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEP 220
Cdd:PRK14271 111 NPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLwdavKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEP 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 221 TTGLDDLSSSQCIALLKVLaAGGRTVICSIHTpSAKIFEMLDAVYVLAEGQCVYQG 276
Cdd:PRK14271 191 TSALDPTTTEKIEEFIRSL-ADRLTVIIVTHN-LAQAARISDRAALFFDGRLVEEG 244
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
72-282 |
2.72e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 67.71 E-value: 2.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 72 TKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG-FGAvcESGEILVNN---SPRDMRVFRKMSRYIMQTDvlDSQF 147
Cdd:PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGlLKP--QSGEIKIDGitiSKENLKEIRKKIGIIFQNP--DNQF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 ---TVlEMMIlAANLKlGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGL 224
Cdd:PRK13632 97 igaTV-EDDI-AFGLE-NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSML 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 24580545 225 DDLSSSQCIALLKVLAA-GGRTVICSIHTPSAKIfeMLDAVYVLAEGQCVYQGKGSNIV 282
Cdd:PRK13632 174 DPKGKREIKKIMVDLRKtRKKTLISITHDMDEAI--LADKVIVFSEGKLIAQGKPKEIL 230
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
76-276 |
3.37e-12 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 67.35 E-value: 3.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 76 LRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF---GAVCESGEILVNNS-------PRDMRVFRKMSRYIMQTDVLDS 145
Cdd:PRK09984 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitgDKSAGSHIELLGRTvqregrlARDIRKSRANTGYIFQQFNLVN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 146 QFTVLEMMILAAnlkLG---------KELNLKQKLEVIDEI--LGMLRLKdtlNTMAQKLSGGERKRLCIALELVNNPPV 214
Cdd:PRK09984 100 RLSVLENVLIGA---LGstpfwrtcfSWFTREQKQRALQALtrVGMVHFA---HQRVSTLSGGQQQRVAIARALMQQAKV 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24580545 215 IFLDEPTTGLDDLSSSQCIALLK-VLAAGGRTVICSIHTPSAKIfEMLDAVYVLAEGQCVYQG 276
Cdd:PRK09984 174 ILADEPIASLDPESARIVMDTLRdINQNDGITVVVTLHQVDYAL-RYCERIVALRQGHVFYDG 235
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
79-225 |
5.57e-12 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 67.94 E-value: 5.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 79 VNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVnnsprDMRVFRKMSRYIMQTDVLDSQFTVLEMMILAAN 158
Cdd:PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-TAGQIML-----DGVDLSHVPPYQRPINMMFQSYALFPHMTVEQN 111
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24580545 159 LKLGkelnLKQ----KLEV---IDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK11607 112 IAFG----LKQdklpKAEIasrVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
75-225 |
6.22e-12 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 67.75 E-value: 6.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNspRDMRVFRKMSRYI---MQTDVLDSQFTVLE 151
Cdd:PRK11000 18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-TSGDLFIGE--KRMNDVPPAERGVgmvFQSYALYPHLSVAE 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 152 MMilAANLKLG--KELNLKQKLEVIDEILGMLRLkdtLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK11000 95 NM--SFGLKLAgaKKEEINQRVNQVAEVLQLAHL---LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
90-277 |
7.02e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 66.02 E-value: 7.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKTTLLNllaGFGAVCEsgeilVNNSPR---DMRVFRKmSRYIMQTDVLDSQFTV---------LEMMILAA 157
Cdd:PRK14267 34 ALMGPSGCGKSTLLR---TFNRLLE-----LNEEARvegEVRLFGR-NIYSPDVDPIEVRREVgmvfqypnpFPHLTIYD 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 158 NLKLGKELN--LKQKLEVIDEILGMLR-------LKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLS 228
Cdd:PRK14267 105 NVAIGVKLNglVKSKKELDERVEWALKkaalwdeVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVG 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24580545 229 SSQCIALLKVLAAgGRTVICSIHTPsAKIFEMLDAVYVLAEGQCVYQGK 277
Cdd:PRK14267 185 TAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGP 231
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
76-281 |
7.44e-12 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 68.27 E-value: 7.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 76 LRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDmRVFRKMSR-----YIMQTDVLDSQFTVL 150
Cdd:PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKGTITINNINYN-KLDHKLAAqlgigIIYQELSVIDELTVL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 151 EmmilaaNLKLGKELNLK-QKLEVID---------EILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEP 220
Cdd:PRK09700 99 E------NLYIGRHLTKKvCGVNIIDwremrvraaMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEP 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24580545 221 TTGLDDLSSSQCIALLKVLAAGGRTVICSIHTpSAKIFEMLDAVYVLAEGQCVYQGKGSNI 281
Cdd:PRK09700 173 TSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
46-271 |
7.61e-12 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 68.24 E-value: 7.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 46 LPSwPAVNLQFSELCYVVPDQTNAsktktILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILV 120
Cdd:COG4618 324 LPR-PKGRLSVENLTVVPPGSKRP-----ILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVwpptaGSVRLDGADLS 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 121 NNSPRDmrvFRKMSRYIMQtDV----------------LDSqftvlEMMILAAnlklgkelnlkqKL----EVIdeilgm 180
Cdd:COG4618 398 QWDREE---LGRHIGYLPQ-DVelfdgtiaeniarfgdADP-----EKVVAAA------------KLagvhEMI------ 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 181 LRLKDTLNTM----AQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSak 256
Cdd:COG4618 451 LRLPDGYDTRigegGARLSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRPS-- 528
|
250
....*....|....*
gi 24580545 257 IFEMLDAVYVLAEGQ 271
Cdd:COG4618 529 LLAAVDKLLVLRDGR 543
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
87-251 |
7.76e-12 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 64.83 E-value: 7.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSP-RDMR-VFRKMSRYIMQTDVLDSQFTVLEmmilaaNLKLGKE 164
Cdd:PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL-ARPDAGEVLWQGEPiRRQRdEYHQDLLYLGHQPGIKTELTALE------NLRFYQR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 165 LNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGR 244
Cdd:PRK13538 101 LHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGG 180
|
....*..
gi 24580545 245 TVICSIH 251
Cdd:PRK13538 181 MVILTTH 187
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
87-227 |
8.15e-12 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 66.13 E-value: 8.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGfgaVCE--SGEILVNNSP------RDMRVFR--KMSrYIMQTDVLDSQFTVLEmmila 156
Cdd:cd03294 51 EIFVIMGLSGSGKSTLLRCINR---LIEptSGKVLIDGQDiaamsrKELRELRrkKIS-MVFQSFALLPHRTVLE----- 121
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24580545 157 aNLKLGKEL---NLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:cd03294 122 -NVAFGLEVqgvPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
76-251 |
8.71e-12 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 65.28 E-value: 8.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 76 LRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVFRKMSRYIMQTDVLDSQFTVL 150
Cdd:PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIerpsaGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVY 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 151 EMMILAANLKLGKELNLKQKLEVIDEILGMLrlkDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSS 230
Cdd:PRK10908 98 DNVAIPLIIAGASGDDIRRRVSAALDKVGLL---DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE 174
|
170 180
....*....|....*....|.
gi 24580545 231 QCIALLKVLAAGGRTVICSIH 251
Cdd:PRK10908 175 GILRLFEEFNRVGVTVLMATH 195
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
90-225 |
8.71e-12 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 68.06 E-value: 8.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKTTLLNLLA-GFGAvcESGEILVNNSprDMR-VFRK-MSRYIMqtdvldsqfTVL-EMMIL----AANLKL 161
Cdd:PRK13657 365 AIVGPTGAGKSTLINLLQrVFDP--QSGRILIDGT--DIRtVTRAsLRRNIA---------VVFqDAGLFnrsiEDNIRV 431
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 162 GKE----------LNLKQKLEVIdeilgmLRLKDTLNTMA----QKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK13657 432 GRPdatdeemraaAERAQAHDFI------ERKPDGYDTVVgergRQLSGGERQRLAIARALLKDPPILILDEATSALD 503
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
73-271 |
9.03e-12 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 65.85 E-value: 9.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP-----RDMRVFRKMSRYIMQTDVLDsqf 147
Cdd:PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP-SAGELLAGTAPlaearEDTRLMFQDARLLPWKKVID--- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 tvlemmilaaNLKLGKELNLKQK-LEVIDEIlgmlRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDD 226
Cdd:PRK11247 101 ----------NVGLGLKGQWRDAaLQALAAV----GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24580545 227 LSSSQCIALLKVL-AAGGRTVICSIHTPSAKIfEMLDAVYVLAEGQ 271
Cdd:PRK11247 167 LTRIEMQDLIESLwQQHGFTVLLVTHDVSEAV-AMADRVLLIEEGK 211
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
73-277 |
9.05e-12 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 65.74 E-value: 9.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAV-CESGEILVNNSP-RDMRVFRKMSRYI---MQTDVLDSQF 147
Cdd:TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYeVTSGTILFKGQDlLELEPDERARAGLflaFQYPEEIPGV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEMMILAANLKLG----KELNLKQKLEVIDEILGMLR-----LKDTLNTmaqKLSGGERKRLCIALELVNNPPVIFLD 218
Cdd:TIGR01978 93 SNLEFLRSALNARRSargeEPLDLLDFEKLLKEKLALLDmdeefLNRSVNE---GFSGGEKKRNEILQMALLEPKLAILD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 219 EPTTGLDdlsssqcIALLKVLAAG-------GRTVICSIHTPsaKIFEML--DAVYVLAEGQCVYQGK 277
Cdd:TIGR01978 170 EIDSGLD-------IDALKIVAEGinrlrepDRSFLIITHYQ--RLLNYIkpDYVHVLLDGRIVKSGD 228
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
87-225 |
9.34e-12 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 65.72 E-value: 9.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAvCESGEILVNNSPRDMRVFRKMS----RYIMQTD---VLDSQFTVLEMMILA-AN 158
Cdd:PRK11701 33 EVLGIVGESGSGKTTLLNALSARLA-PDAGEVHYRMRDGQLRDLYALSeaerRRLLRTEwgfVHQHPRDGLRMQVSAgGN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 159 LklGKEL---------NLKQK----LEVIdEIlGMLRLKDTLNTmaqkLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK11701 112 I--GERLmavgarhygDIRATagdwLERV-EI-DAARIDDLPTT----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
63-282 |
1.47e-11 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 67.13 E-value: 1.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 63 VPDQTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFG-------------AVCES-------------- 115
Cdd:TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDqyeptsgriiyhvALCEKcgyverpskvgepc 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 116 ---GEIL-------VNNSPRDMRVFRKMSRYIMQ-TDVLDSQFTVLEMMILAANlKLGKELN--LKQKLEVIDeilgMLR 182
Cdd:TIGR03269 83 pvcGGTLepeevdfWNLSDKLRRRIRKRIAIMLQrTFALYGDDTVLDNVLEALE-EIGYEGKeaVGRAVDLIE----MVQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 183 LKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD----DLSSSqciALLKVLAAGGRTVICSIHTPSAkIF 258
Cdd:TIGR03269 158 LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDpqtaKLVHN---ALEEAVKASGISMVLTSHWPEV-IE 233
|
250 260
....*....|....*....|....
gi 24580545 259 EMLDAVYVLAEGQCVYQGKGSNIV 282
Cdd:TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVV 257
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
74-225 |
1.70e-11 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 64.42 E-value: 1.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 74 TILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVFR-KMSRYIMQTDVLDSQF 147
Cdd:PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLddgssGEVSLVGQPLHQMDEEARAKLRaKHVGFVFQSFMLIPTL 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 148 TVLEMMILAANLKLGKElnlKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK10584 104 NALENVELPALLRGESS---RQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
76-279 |
2.19e-11 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 64.52 E-value: 2.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 76 LRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCESGEILVNNSPRDMRVFRKMSRYIMqtdVLDSQFTVLEMMIL 155
Cdd:PRK11614 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA---IVPEGRRVFSRMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 156 AANLKLGKEL-NLKQKLEVIDEILGML-RLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCI 233
Cdd:PRK11614 98 EENLAMGGFFaERDQFQERIKWVYELFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIF 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24580545 234 ALLKVLAAGGRTVICsIHTPSAKIFEMLDAVYVLAEGQCVYQGKGS 279
Cdd:PRK11614 178 DTIEQLREQGMTIFL-VEQNANQALKLADRGYVLENGHVVLEDTGD 222
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
90-239 |
2.19e-11 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 66.63 E-value: 2.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKTTL----LNLLAGFGAVCESGEILVNNSPRDMRVFRKMsryiMQtdV--------LDSQFTVLEmmILAA 157
Cdd:COG4172 316 GLVGESGSGKSTLglalLRLIPSEGEIRFDGQDLDGLSRRALRPLRRR----MQ--VvfqdpfgsLSPRMTVGQ--IIAE 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 158 NLKL-GKELNLKQKLEVIDEIL---GMLRlkDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCI 233
Cdd:COG4172 388 GLRVhGPGLSAAERRARVAEALeevGLDP--AARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQIL 465
|
....*.
gi 24580545 234 ALLKVL 239
Cdd:COG4172 466 DLLRDL 471
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
54-276 |
2.81e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 64.80 E-value: 2.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVpdQTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLN----LLAGFGAVCESGEILVNNSPRD--M 127
Cdd:PRK13646 3 IRFDNVSYTY--QKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQninaLLKPTTGTVTVDDITITHKTKDkyI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 128 RVFRKMSRYIMQtdVLDSQF---TV-LEMMILAANLKLgkelNLKQKLEVIDEILgmLRLKDTLNTMAQ---KLSGGERK 200
Cdd:PRK13646 81 RPVRKRIGMVFQ--FPESQLfedTVeREIIFGPKNFKM----NLDEVKNYAHRLL--MDLGFSRDVMSQspfQMSGGQMR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 201 RLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAA-GGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQG 276
Cdd:PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTdENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQT 228
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
84-273 |
3.34e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 66.09 E-value: 3.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 84 HSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRdmrvfrkmsRYIMQTDVLDSQFTVL--EM-----MILA 156
Cdd:PRK11288 28 RAGQVHALMGENGAGKSTLLKILSGNYQP-DAGSILIDGQEM---------RFASTTAALAAGVAIIyqELhlvpeMTVA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 157 ANLKLGKelnLKQKLEVIDEILGMLRLKDTLNTMA---------QKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:PRK11288 98 ENLYLGQ---LPHKGGIVNRRLLNYEAREQLEHLGvdidpdtplKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24580545 228 SSSQCIALLKVLAAGGRTVICSIHTpSAKIFEMLDAVYVLAEGQCV 273
Cdd:PRK11288 175 EIEQLFRVIRELRAEGRVILYVSHR-MEEIFALCDAITVFKDGRYV 219
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
67-225 |
5.03e-11 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 60.93 E-value: 5.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 67 TNASKT---KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGfGAVCESGEIlvnnsprdmrvfrkmsryimqtdvl 143
Cdd:cd03221 4 ENLSKTyggKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG-ELEPDEGIV------------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 144 dsqftvlemmILAANLKLGkelnlkqklevideilgmlrlkdtlnTMAQkLSGGERKRLCIALELVNNPPVIFLDEPTTG 223
Cdd:cd03221 58 ----------TWGSTVKIG--------------------------YFEQ-LSGGEKMRLALAKLLLENPNLLLLDEPTNH 100
|
..
gi 24580545 224 LD 225
Cdd:cd03221 101 LD 102
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
73-287 |
5.76e-11 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 63.53 E-value: 5.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCES-----GEILVNNSPR---DMRVFRKMSRYIMQTDVLD 144
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSkikvdGKVLYFGKDIfqiDAIKLRKEVGMVFQQPNPF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 145 SQFTVLEMmiLAANLK---LGKELNLKQKLEVIDEILGMLR-LKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEP 220
Cdd:PRK14246 103 PHLSIYDN--IAYPLKshgIKEKREIKKIVEECLRKVGLWKeVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 221 TTGLDDLSSSQCIALLKVLAAGGRTVICSiHTPSaKIFEMLDAVYVLAEGQCVYQGKGSNIVPFLKN 287
Cdd:PRK14246 181 TSMIDIVNSQAIEKLITELKNEIAIVIVS-HNPQ-QVARVADYVAFLYNGELVEWGSSNEIFTSPKN 245
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
54-296 |
6.02e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 63.67 E-value: 6.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVPDqtnaSKtKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF--------GAVCESGEILVNNSPR 125
Cdd:PRK13640 6 VEFKHVSFTYPD----SK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLllpddnpnSKITVDGITLTAKTVW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 126 DMR-----VFRKMSRYIMQTDVLDSQFTVLEmmilaaNLKLGKELNLKQKLEVIDEIlGMLrlkDTLNTMAQKLSGGERK 200
Cdd:PRK13640 81 DIRekvgiVFQNPDNQFVGATVGDDVAFGLE------NRAVPRPEMIKIVRDVLADV-GML---DYIDSEPANLSGGQKQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 201 RLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIhTPSAKIFEMLDAVYVLAEGQCVYQGKGSN 280
Cdd:PRK13640 151 RVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI-THDIDEANMADQVLVLDDGKLLAQGSPVE 229
|
250
....*....|....*....
gi 24580545 281 IVP---FLKNFGLCCPITY 296
Cdd:PRK13640 230 IFSkveMLKEIGLDIPFVY 248
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
79-237 |
6.95e-11 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 63.09 E-value: 6.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 79 VNGM---FHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSP----RDMRVFRKMSRYIMQTDVLDSQFTVLE 151
Cdd:PRK11300 21 VNNVnleVREQEIVSLIGPNGAGKTTVFNCLTGFYKP-TGGTILLRGQHieglPGHQIARMGVVRTFQHVRLFREMTVIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 152 MMILAANLKLGKEL------------NLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDE 219
Cdd:PRK11300 100 NLLVAQHQQLKTGLfsgllktpafrrAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179
|
170 180
....*....|....*....|...
gi 24580545 220 PTTGL-----DDLssSQCIALLK 237
Cdd:PRK11300 180 PAAGLnpketKEL--DELIAELR 200
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
73-298 |
8.65e-11 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 63.08 E-value: 8.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDmrVFRKMSrYIMQTDVLDSQF 147
Cdd:PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLmtpahGHVWLDGEHIQHYASKE--VARRIG-LLAQNATTPGDI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEMmiLAANLKLGKELNLKQKLEVIDEILGMLR---LKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGL 224
Cdd:PRK10253 97 TVQEL--VARGRYPHQPLFTRWRKEDEEAVTKAMQatgITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 225 DdlsSSQCIALLKVLAAGGRTvicSIHTPSAKIFEMLDA------VYVLAEGQCVYQGKGSNIV-PFL--KNFGLCCPIT 295
Cdd:PRK10253 175 D---ISHQIDLLELLSELNRE---KGYTLAAVLHDLNQAcryashLIALREGKIVAQGAPKEIVtAELieRIYGLRCMII 248
|
...
gi 24580545 296 YNP 298
Cdd:PRK10253 249 DDP 251
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
87-282 |
8.98e-11 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 64.82 E-value: 8.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGfgaVCE--SGE--ILVNNSPRDMRVFRKMSR-----YI---MQTDVLDSQFTVLEMMI 154
Cdd:TIGR03269 311 EIFGIVGTSGAGKTTLSKIIAG---VLEptSGEvnVRVGDEWVDMTKPGPDGRgrakrYIgilHQEYDLYPHRTVLDNLT 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 155 LAANLKLGKELNLKQKLEVIdEILGML--RLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQC 232
Cdd:TIGR03269 388 EAIGLELPDELARMKAVITL-KMVGFDeeKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDV 466
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 24580545 233 I-ALLKVLAAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQGKGSNIV 282
Cdd:TIGR03269 467 ThSILKAREEMEQTFIIVSHDMDF-VLDVCDRAALMRDGKIVKIGDPEEIV 516
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
69-237 |
1.05e-10 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 63.67 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 69 ASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLL---NLLagfgavcE---SGEILVNN------SPRDMRVFRKMSRY 136
Cdd:PRK11153 14 GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIrciNLL-------ErptSGRVLVDGqdltalSEKELRKARRQIGM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 137 IMQTDVLDSQFTVlemmilAANLKLGKELNLKQKLEV---IDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPP 213
Cdd:PRK11153 87 IFQHFNLLSSRTV------FDNVALPLELAGTPKAEIkarVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
|
170 180
....*....|....*....|....
gi 24580545 214 VIFLDEPTTGLDDLSSSQCIALLK 237
Cdd:PRK11153 161 VLLCDEATSALDPATTRSILELLK 184
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
89-276 |
1.22e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 64.46 E-value: 1.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 89 TAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNspRDMRvfrkmsryimqtDV-LDS---------QFTVLEMMILAAN 158
Cdd:COG5265 387 VAIVGPSGAGKSTLARLLFRFYDV-TSGRILIDG--QDIR------------DVtQASlraaigivpQDTVLFNDTIAYN 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 159 LKLGK------ELNLKQKLEVIDEILgmLRLKDTLNTM----AQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLS 228
Cdd:COG5265 452 IAYGRpdaseeEVEAAARAAQIHDFI--ESLPDGYDTRvgerGLKLSGGEKQRVAIARTLLKNPPILIFDEATSALDSRT 529
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 24580545 229 SSQCIALLKVLAAgGRTVICSIHTPS----AkifemlDAVYVLAEGQCVYQG 276
Cdd:COG5265 530 ERAIQAALREVAR-GRTTLVIAHRLStivdA------DEILVLEAGRIVERG 574
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
67-298 |
1.76e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 62.33 E-value: 1.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 67 TNASKTKTILRRVNGM---FHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNS--PRDMRVFRKMSRyiMQTD 141
Cdd:PRK13645 15 TYAKKTPFEFKALNNTsltFKKNKVTCVIGTTGSGKSTMIQLTNGL-IISETGQTIVGDYaiPANLKKIKEVKR--LRKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 142 V-LDSQF-------TVLEMMILAANLKLGKelNLKQKLEVIDEILGMLRL-KDTLNTMAQKLSGGERKRLCIALELVNNP 212
Cdd:PRK13645 92 IgLVFQFpeyqlfqETIEKDIAFGPVNLGE--NKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDG 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 213 PVIFLDEPTTGLDDLSSSQCIALLKVLAAG-GRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQGKgsnivPF--LKNFG 289
Cdd:PRK13645 170 NTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGS-----PFeiFSNQE 243
|
....*....
gi 24580545 290 LCCPITYNP 298
Cdd:PRK13645 244 LLTKIEIDP 252
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
54-293 |
2.07e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 61.93 E-value: 2.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 54 LQFSELCYVVPDQTNAsktktiLRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNN----SPRDMRV 129
Cdd:PRK13644 2 IRLENVSYSYPDGTPA------LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGidtgDFSKLQG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 130 FRKMSRYIMQTDvlDSQF---TVLEmmilaaNLKLGKELNLKQKLEV---IDEILGMLRLKDTLNTMAQKLSGGERKrlC 203
Cdd:PRK13644 75 IRKLVGIVFQNP--ETQFvgrTVEE------DLAFGPENLCLPPIEIrkrVDRALAEIGLEKYRHRSPKTLSGGQGQ--C 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 204 IALE--LVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHtpSAKIFEMLDAVYVLAEGQCVYQGKGSNI 281
Cdd:PRK13644 145 VALAgiLTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITH--NLEELHDADRIIVMDRGKIVLEGEPENV 222
|
250
....*....|....
gi 24580545 282 V--PFLKNFGLCCP 293
Cdd:PRK13644 223 LsdVSLQTLGLTPP 236
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
76-273 |
2.44e-10 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 63.50 E-value: 2.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 76 LRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAvCESGEILVN------NSPRDMR----VFrkmsryIMQTDVLDS 145
Cdd:COG1129 20 LDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQ-PDSGEILLDgepvrfRSPRDAQaagiAI------IHQELNLVP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 146 QFTVLEmmilaaNLKLGKELnlkQKLEVID---------EILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIF 216
Cdd:COG1129 93 NLSVAE------NIFLGREP---RRGGLIDwramrrrarELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 217 LDEPTTGLDDLSSSQCIALLKVLAAGGRTVIcSIhtpSAK---IFEMLDAVYVLAEGQCV 273
Cdd:COG1129 164 LDEPTASLTEREVERLFRIIRRLKAQGVAII-YI---SHRldeVFEIADRVTVLRDGRLV 219
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
71-289 |
2.51e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 61.58 E-value: 2.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAV-CESGEILVNNS-----PRDMR----VFRKMSRYIMQT 140
Cdd:CHL00131 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYkILEGDILFKGEsildlEPEERahlgIFLAFQYPIEIP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 141 DVLDSQFtvlemMILAANLKLgKELNLKQK-----LEVIDEILGMLRLKDT-LN-TMAQKLSGGERKRLCIALELVNNPP 213
Cdd:CHL00131 98 GVSNADF-----LRLAYNSKR-KFQGLPELdplefLEIINEKLKLVGMDPSfLSrNVNEGFSGGEKKRNEILQMALLDSE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 214 VIFLDEPTTGLDdlsssqcIALLKVLAAG-------GRTVICSIHTPSAKIFEMLDAVYVLAEGQCVYQGkGSNIVPFLK 286
Cdd:CHL00131 172 LAILDETDSGLD-------IDALKIIAEGinklmtsENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG-DAELAKELE 243
|
...
gi 24580545 287 NFG 289
Cdd:CHL00131 244 KKG 246
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
75-277 |
2.53e-10 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 61.52 E-value: 2.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCEsGEILVNNSP----RD----MRVFRKMSRYIMQTDV---- 142
Cdd:PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE-GSIVVNGQTinlvRDkdgqLKVADKNQLRLLRTRLtmvf 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 143 ----LDSQFTVLEMMILAA--NLKLGKELNLKQKLEVIDEILGMLRLKDTLNTmaqKLSGGERKRLCIALELVNNPPVIF 216
Cdd:PRK10619 99 qhfnLWSHMTVLENVMEAPiqVLGLSKQEARERAVKYLAKVGIDERAQGKYPV---HLSGGQQQRVSIARALAMEPEVLL 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24580545 217 LDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHtpsakifEMLDAVYVLAEGQCVYQGK 277
Cdd:PRK10619 176 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH-------EMGFARHVSSHVIFLHQGK 229
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
87-267 |
2.57e-10 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 61.61 E-value: 2.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAG-----FGAVCESG---EILvnnsprdmRVFRKMSRYIMQTDVLDSQFTV------LEM 152
Cdd:cd03236 27 QVLGLVGPNGIGKSTALKILAGklkpnLGKFDDPPdwdEIL--------DEFRGSELQNYFTKLLEGDVKVivkpqyVDL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 153 MILAANLKLGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQC 232
Cdd:cd03236 99 IPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNA 178
|
170 180 190
....*....|....*....|....*....|....*.
gi 24580545 233 IALLKVLAAGGRTVICSIHTPSakIFEML-DAVYVL 267
Cdd:cd03236 179 ARLIRELAEDDNYVLVVEHDLA--VLDYLsDYIHCL 212
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
87-239 |
3.01e-10 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 61.34 E-value: 3.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLL-------NLLAGF---GAVCESGEILVNN--SPRDMR-----VFRKMSRYimQTDVLDSQFTV 149
Cdd:PRK14243 37 QITAFIGPSGCGKSTILrcfnrlnDLIPGFrveGKVTFHGKNLYAPdvDPVEVRrrigmVFQKPNPF--PKSIYDNIAYG 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 150 LEMMILAANLKLGKELNLKQKLeVIDEIlgmlrlKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSS 229
Cdd:PRK14243 115 ARINGYKGDMDELVERSLRQAA-LWDEV------KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIST 187
|
170
....*....|
gi 24580545 230 SQCIALLKVL 239
Cdd:PRK14243 188 LRIEELMHEL 197
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
87-252 |
3.13e-10 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 63.88 E-value: 3.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVCeSGE-------ILVNNSprdmRVFRKMSrYIMQTDVLDSQFTVLEMMILAANL 159
Cdd:TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVT-SGDatvagksILTNIS----DVHQNMG-YCPQFDAIDDLLTGREHLYLYARL 2039
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 160 KLGKELNLKQKLEVIDEILGMLRLKDTLntmAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVL 239
Cdd:TIGR01257 2040 RGVPAEEIEKVANWSIQSLGLSLYADRL---AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116
|
170
....*....|...
gi 24580545 240 AAGGRTVICSIHT 252
Cdd:TIGR01257 2117 IREGRAVVLTSHS 2129
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
73-296 |
3.37e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 61.60 E-value: 3.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNN-SPRDMRV----FRKMSRYIMQTdvldSQF 147
Cdd:PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL-LKPTSGKIIIDGvDITDKKVklsdIRKKVGLVFQY----PEY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 TVLEMMIlAANLKLG-KELNLKQkleviDEILGmlRLKDTLN-------TMAQK----LSGGERKRLCIALELVNNPPVI 215
Cdd:PRK13637 95 QLFEETI-EKDIAFGpINLGLSE-----EEIEN--RVKRAMNivgldyeDYKDKspfeLSGGQKRRVAIAGVVAMEPKIL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 216 FLDEPTTGLDDLSSSQCIALLKVLAAG-GRTVICSIHTPS--AKIfemLDAVYVLAEGQCVYQGKGSNI---VPFLKNFG 289
Cdd:PRK13637 167 ILDEPTAGLDPKGRDEILNKIKELHKEyNMTIILVSHSMEdvAKL---ADRIIVMNKGKCELQGTPREVfkeVETLESIG 243
|
....*...
gi 24580545 290 LCCP-ITY 296
Cdd:PRK13637 244 LAVPqVTY 251
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
85-225 |
4.14e-10 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 62.02 E-value: 4.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 85 SHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVfrkmsRYIMQTDVLDSQFTVLEmmilaaNL 159
Cdd:PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLehqtsGHIRFHGTDVSRLHARDRKV-----GFVFQHYALFRHMTVFD------NI 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 160 KLG-------KELN---LKQKlevIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK10851 96 AFGltvlprrERPNaaaIKAK---VTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
87-271 |
4.63e-10 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 59.37 E-value: 4.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDMRVFRKmsryimqtdvldsqftvlemmilAANLKLG---- 162
Cdd:cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLDGKPVTRRSPRD-----------------------AIRAGIAyvpe 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 163 --KELNLKQKLEVIDEIlgmlrlkdtlnTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLA 240
Cdd:cd03215 83 drKREGLVLDLSVAENI-----------ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA 151
|
170 180 190
....*....|....*....|....*....|.
gi 24580545 241 AGGRTVICsIHTPSAKIFEMLDAVYVLAEGQ 271
Cdd:cd03215 152 DAGKAVLL-ISSELDELLGLCDRILVMYEGR 181
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
90-225 |
5.30e-10 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 61.29 E-value: 5.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVFRKMSRYIMQtD---VLDSQFTVLEmmILAANLKL 161
Cdd:COG4608 48 GLVGESGCGKSTLGRLLLRLeeptsGEILFDGQDITGLSGRELRPLRRRMQMVFQ-DpyaSLNPRMTVGD--IIAEPLRI 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24580545 162 GKELNLKQKLEVIDEILGMLRLK-DTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:COG4608 125 HGLASKAERRERVAELLELVGLRpEHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALD 189
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
90-281 |
5.34e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 61.00 E-value: 5.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKTTLLN-----LLAGFGAVCESGE-ILVNNSPRDMRVFRKMSRYIMQTDvlDSQF---TVLE-MMILAANL 159
Cdd:PRK13641 37 ALVGHTGSGKSTLMQhfnalLKPSSGTITIAGYhITPETGNKNLKKLRKKVSLVFQFP--EAQLfenTVLKdVEFGPKNF 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 160 KLGKELNLKQKLEVIDEIlGMLrlKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVL 239
Cdd:PRK13641 115 GFSEDEAKEKALKWLKKV-GLS--EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY 191
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 24580545 240 AAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQGKGSNI 281
Cdd:PRK13641 192 QKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEI 232
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
76-247 |
6.66e-10 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 58.49 E-value: 6.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 76 LRRVNGMFHSHELTAIIGPSGAGKTTLLNllAGFGAVcesgeilvnnsprdmrvfrKMSRYIMQTDVLDSQFTVLemmil 155
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN--EGLYAS-------------------GKARLISFLPKFSRNKLIF----- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 156 aanlklgkelnLKQKLEVIDEILGMLRLKDTLNTmaqkLSGGERKRLCIALEL-VNNPPVIF-LDEPTTGLDDLSSSQCI 233
Cdd:cd03238 65 -----------IDQLQFLIDVGLGYLTLGQKLST----LSGGELQRVKLASELfSEPPGTLFiLDEPSTGLHQQDINQLL 129
|
170
....*....|....
gi 24580545 234 ALLKVLAAGGRTVI 247
Cdd:cd03238 130 EVIKGLIDLGNTVI 143
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
73-277 |
7.47e-10 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 62.04 E-value: 7.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDM---RVFRKMSRYIMQTDVL--DSQF 147
Cdd:PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-TEGEIRLDGRPLSSlshSVLRQGVAMVQQDPVVlaDTFL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 tvlemmilaANLKLGKELNLKQKLEVIDEI-LGML--RLKDTLNTM----AQKLSGGERKRLCIALELVNNPPVIFLDEP 220
Cdd:PRK10790 433 ---------ANVTLGRDISEEQVWQALETVqLAELarSLPDGLYTPlgeqGNNLSVGQKQLLALARVLVQTPQILILDEA 503
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 24580545 221 TTGLDDlSSSQCIAllKVLAAGGR--TVICSIHTPSAkIFEMlDAVYVLAEGQCVYQGK 277
Cdd:PRK10790 504 TANIDS-GTEQAIQ--QALAAVREhtTLVVIAHRLST-IVEA-DTILVLHRGQAVEQGT 557
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
71-276 |
9.13e-10 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 59.08 E-value: 9.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNnsprdmrvfRKMSRYIMQTDVLDSQFTVL 150
Cdd:cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-DSGTVTVR---------GRVSSLLGLGGGFNPELTGR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 151 EmmilaaNLKL-GKELNLKQKL--EVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDL 227
Cdd:cd03220 103 E------NIYLnGRLLGLSRKEidEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24580545 228 SSSQCIALLKVLAAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQG 276
Cdd:cd03220 177 FQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLCDRALVLEKGKIRFDG 224
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
87-251 |
9.90e-10 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 59.27 E-value: 9.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLnlLAGFGAVCE-SGEILVNNSPRDMRVF---RKMSRYIMqtdVLDSQFTVLEMMILAANLKLG 162
Cdd:cd03290 28 QLTMIVGQVGCGKSSLL--LAILGEMQTlEGKVHWSNKNESEPSFeatRSRNRYSV---AYAAQKPWLLNATVEENITFG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 163 KELNlKQKLEVIDEILGMLRLKDTLNTMAQ--------KLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCI- 233
Cdd:cd03290 103 SPFN-KQRYKAVTDACSLQPDIDLLPFGDQteigergiNLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMq 181
|
170
....*....|....*....
gi 24580545 234 -ALLKVLAAGGRTVICSIH 251
Cdd:cd03290 182 eGILKFLQDDKRTLVLVTH 200
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
42-276 |
1.15e-09 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 61.27 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 42 GLKYLPSWPAV-NLQFSELCYvvPDQTnasktKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVCEsGEILv 120
Cdd:PRK10789 303 GSEPVPEGRGElDVNIRQFTY--PQTD-----HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE-GDIR- 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 121 nnsprdmrvFRKMSRYIMQTDVLDSQFTVLEMM------ILAANLKLGKELNLKQKLE-------VIDEIlgmLRLKDTL 187
Cdd:PRK10789 374 ---------FHDIPLTKLQLDSWRSRLAVVSQTpflfsdTVANNIALGRPDATQQEIEhvarlasVHDDI---LRLPQGY 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 188 NTMAQK----LSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAgGRTVICSIHTPSAkiFEMLDA 263
Cdd:PRK10789 442 DTEVGErgvmLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE-GRTVIISAHRLSA--LTEASE 518
|
250
....*....|...
gi 24580545 264 VYVLAEGQCVYQG 276
Cdd:PRK10789 519 ILVMQHGHIAQRG 531
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
83-225 |
1.32e-09 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 58.71 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 83 FHSHELTAII--GPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDMRVFRKMSRYIMQTDVLDSQFTVLEmmilaaNLK 160
Cdd:PRK13543 32 FHVDAGEALLvqGDNGAGKTTLLRVLAGLLHV-ESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLE------NLH 104
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24580545 161 LGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK13543 105 FLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
71-282 |
1.54e-09 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 58.43 E-value: 1.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 71 KTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG---FGAVCESGEILVNNSPRDmrvfrkmsryimqTDVLDSqf 147
Cdd:COG2401 41 VERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGalkGTPVAGCVDVPDNQFGRE-------------ASLIDA-- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 tvlemmilaanlkLGKELNLKQKLEVideiLGMLRLKDTLNTMA--QKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:COG2401 106 -------------IGRKGDFKDAVEL----LNAVGLSDAVLWLRrfKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLD 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 24580545 226 DLsSSQCIA--LLKVLAAGGRTVICSIHTPsakifEMLDAvyvLAEGQCVYQGKGSNIV 282
Cdd:COG2401 169 RQ-TAKRVArnLQKLARRAGITLVVATHHY-----DVIDD---LQPDLLIFVGYGGVPE 218
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
68-236 |
1.61e-09 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 59.42 E-value: 1.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 68 NASKTktiLRRVNGMFHSHELTA---------------IIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDMRVFRK 132
Cdd:PRK15112 9 NLSKT---FRYRTGWFRRQTVEAvkplsftlregqtlaIIGENGSGKSTLAKMLAGMIEP-TSGELLIDDHPLHFGDYSY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 133 MS---RYIMQ--TDVLDSQFTVLEmmILAANLKLGKELNLKQKLEVIDEILGMLRLK-DTLNTMAQKLSGGERKRLCIAL 206
Cdd:PRK15112 85 RSqriRMIFQdpSTSLNPRQRISQ--ILDFPLRLNTDLEPEQREKQIIETLRQVGLLpDHASYYPHMLAPGQKQRLGLAR 162
|
170 180 190
....*....|....*....|....*....|
gi 24580545 207 ELVNNPPVIFLDEPTTGLDDLSSSQCIALL 236
Cdd:PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLM 192
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
89-225 |
2.25e-09 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 59.50 E-value: 2.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 89 TAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNN---SPRDMRVF-----RKMSrYIMQTDVLDSQFTVlemmilAANLK 160
Cdd:PRK11144 27 TAIFGRSGAGKTSLINAISGL-TRPQKGRIVLNGrvlFDAEKGIClppekRRIG-YVFQDARLFPHYKV------RGNLR 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 161 LGkelnLKQKLEV-IDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK11144 99 YG----MAKSMVAqFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
68-275 |
2.47e-09 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 60.10 E-value: 2.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 68 NASKTKTILRRVNGMFHSHELTAIIGPSGAGKT----TLLNLLAGFGAVCESGEI------LVNNSPRDMRVFR--KMSr 135
Cdd:PRK15134 17 QQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLLPSPPVVYPSGDIrfhgesLLHASEQTLRGVRgnKIA- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 136 YIMQTDV--LDSQFTVLEMM--ILAANLKLGKELNLKQKLEVIDEIlGMLRLKDTLNTMAQKLSGGERKRLCIALELVNN 211
Cdd:PRK15134 96 MIFQEPMvsLNPLHTLEKQLyeVLSLHRGMRREAARGEILNCLDRV-GIRQAAKRLTDYPHQLSGGERQRVMIAMALLTR 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24580545 212 PPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIhTPSAKIFEML-DAVYVLAEGQCVYQ 275
Cdd:PRK15134 175 PELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFI-THNLSIVRKLaDRVAVMQNGRCVEQ 238
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
76-287 |
2.63e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 58.94 E-value: 2.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 76 LRRVNGMFHSHELTAIIGPSGAGKTTL---LNLLAgfgaVCESGEI--LVNNSPRDMRVFRKMSryIMQTDVLDS----- 145
Cdd:PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFiehLNALL----LPDTGTIewIFKDEKNKKKTKEKEK--VLEKLVIQKtrfkk 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 146 ---------------QF--------TVLEMMILAA-NLKLGKELNLKQKLEVIdEILGMLrlKDTLNTMAQKLSGGERKR 201
Cdd:PRK13651 97 ikkikeirrrvgvvfQFaeyqlfeqTIEKDIIFGPvSMGVSKEEAKKRAAKYI-ELVGLD--ESYLQRSPFELSGGQKRR 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 202 LCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQGKGSNI 281
Cdd:PRK13651 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDI 252
|
....*....
gi 24580545 282 ---VPFLKN 287
Cdd:PRK13651 253 lsdNKFLIE 261
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
73-276 |
4.25e-09 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 57.12 E-value: 4.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLagFGAV-CESGEILVNN------SPRDMRvfRKMSrYIMQTDVL-- 143
Cdd:cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL--FRLVeLSSGSILIDGvdiskiGLHDLR--SRIS-IIPQDPVLfs 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 144 ---------DSQFTvlEMMILAAnlkLgKELNLKqklEVIDEILGMLRLKDTLNTmaQKLSGGERKRLCIALELVNNPPV 214
Cdd:cd03244 92 gtirsnldpFGEYS--DEELWQA---L-ERVGLK---EFVESLPGGLDTVVEEGG--ENLSVGQRQLLCLARALLRKSKI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24580545 215 IFLDEPTTGLDDLSSSQCIALLKvLAAGGRTVICSIHtpsaKIFEMLDA--VYVLAEGQCVYQG 276
Cdd:cd03244 161 LVLDEATASVDPETDALIQKTIR-EAFKDCTVLTIAH----RLDTIIDSdrILVLDKGRVVEFD 219
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
76-318 |
4.49e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 58.11 E-value: 4.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 76 LRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVcESGE--ILVNNSPRDMRVFRKMSRYIMQtdVLDSQF- 147
Cdd:PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLlqptsGTV-TIGErvITAGKKNKKLKPLRKKVGIVFQ--FPEHQLf 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 148 --TVlEMMILAANLKLG-KELNLKQKlevIDEILGMLRL-KDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTG 223
Cdd:PRK13634 100 eeTV-EKDICFGPMNFGvSEEDAKQK---AREMIELVGLpEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 224 LDDLSSSQCIALLKVL-AAGGRTVICSIHTpsakifeMLDA------VYVLAEGQCVYQGKGSNI---VPFLKNFGLCCP 293
Cdd:PRK13634 176 LDPKGRKEMMEMFYKLhKEKGLTTVLVTHS-------MEDAaryadqIVVMHKGTVFLQGTPREIfadPDELEAIGLDLP 248
|
250 260
....*....|....*....|....*
gi 24580545 294 ITYNPADFIIEvaclEYGGSYHEPM 318
Cdd:PRK13634 249 ETVKFKRALEE----KFGISFPKPC 269
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
66-271 |
4.63e-09 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 56.71 E-value: 4.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 66 QTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG-----FGAVCESGEI-LVNNSPrdmrvfrkmsrYIMQ 139
Cdd:cd03250 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGeleklSGSVSVPGSIaYVSQEP-----------WIQN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 140 TdvldsqfTVLEmmilaaNLKLGKELNlKQKLE-VID--------EIlgmlrLKDTLNTM-AQK---LSGGERKRLCIAL 206
Cdd:cd03250 80 G-------TIRE------NILFGKPFD-EERYEkVIKacalepdlEI-----LPDGDLTEiGEKginLSGGQKQRISLAR 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24580545 207 ELVNNPPVIFLDEPTTGLDDLSSS----QCIalLKVLaAGGRTVICSIHTPSakIFEMLDAVYVLAEGQ 271
Cdd:cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRhifeNCI--LGLL-LNNKTRILVTHQLQ--LLPHADQIVVLDNGR 204
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
90-276 |
7.02e-09 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 58.88 E-value: 7.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNspRDMRVFrKMSRYIMQTDVLDSQF-----TVLEMMILAANLKLGKE 164
Cdd:PRK11176 373 ALVGRSGSGKSTIANLLTRFYDI-DEGEILLDG--HDLRDY-TLASLRNQVALVSQNVhlfndTIANNIAYARTEQYSRE 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 165 -----LNLKQKLEVIDeilgmlRLKDTLNTMAQK----LSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIAL 235
Cdd:PRK11176 449 qieeaARMAYAMDFIN------KMDNGLDTVIGEngvlLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 24580545 236 LKVLAAgGRTVICSIHTPSAkiFEMLDAVYVLAEGQCVYQG 276
Cdd:PRK11176 523 LDELQK-NRTSLVIAHRLST--IEKADEILVVEDGEIVERG 560
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
83-226 |
8.05e-09 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 56.08 E-value: 8.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 83 FHSHE-------LTAIIGPSGAGKTTLLN--LLAGFGAvcesgeiLVNNSpRDMRVFRKMsryIMQTDVLdsqfTVLEMM 153
Cdd:cd03240 12 FHERSeieffspLTLIVGQNGAGKTTIIEalKYALTGE-------LPPNS-KGGAHDPKL---IREGEVR----AQVKLA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 154 ILAANlklGKELNLKQKLEVIDEILgMLR---LKDTLNTMAQKLSGGERKRLCIALELV------NNPPVIFLDEPTTGL 224
Cdd:cd03240 77 FENAN---GKKYTITRSLAILENVI-FCHqgeSNWPLLDMRGRCSGGEKVLASLIIRLAlaetfgSNCGILALDEPTTNL 152
|
..
gi 24580545 225 DD 226
Cdd:cd03240 153 DE 154
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
79-225 |
1.03e-08 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 57.55 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 79 VNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEIL-----VNN-SPRD----MrVFrkmsryimQTDVLDSQFT 148
Cdd:PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI-TSGEIWiggrvVNElEPADrdiaM-VF--------QNYALYPHMS 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 149 VLEMMilAANLK---LGKElnlkQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK11650 93 VRENM--AYGLKirgMPKA----EIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
89-225 |
1.07e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 58.28 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 89 TAIIGPSGAGKTTLLNLLAG-----FGAVCESGEI------------------LVNNsprDMRVFRKmSRYImqtDVLDS 145
Cdd:PRK13409 102 TGILGPNGIGKTTAVKILSGelipnLGDYEEEPSWdevlkrfrgtelqnyfkkLYNG---EIKVVHK-PQYV---DLIPK 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 146 QF--TVLEmmILAANLKLGKelnlkqklevIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTG 223
Cdd:PRK13409 175 VFkgKVRE--LLKKVDERGK----------LDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSY 242
|
..
gi 24580545 224 LD 225
Cdd:PRK13409 243 LD 244
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
70-239 |
1.27e-08 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 57.02 E-value: 1.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 70 SKTKTiLRRVNGM---FHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVFRKMSRYIMQTD 141
Cdd:PRK15079 29 QPPKT-LKAVDGVtlrLYEGETLGVVGESGCGKSTFARAIIGLvkatdGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 142 V--LDSQFTVLEmmILAANLKLGK-ELNlkqKLEVIDEILGMLR----LKDTLNTMAQKLSGGERKRLCIALELVNNPPV 214
Cdd:PRK15079 108 LasLNPRMTIGE--IIAEPLRTYHpKLS---RQEVKDRVKAMMLkvglLPNLINRYPHEFSGGQCQRIGIARALILEPKL 182
|
170 180
....*....|....*....|....*
gi 24580545 215 IFLDEPTTGLDDLSSSQCIALLKVL 239
Cdd:PRK15079 183 IICDEPVSALDVSIQAQVVNLLQQL 207
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
72-271 |
1.36e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 57.91 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 72 TKTILRRVNGM---FHSHELTAIIGPSGAGKTTLLNLLagFGAV---CEsGEILVNNSPRDMRVFRKMSRYIM------- 138
Cdd:TIGR02633 269 INPHRKRVDDVsfsLRRGEILGVAGLVGAGRTELVQAL--FGAYpgkFE-GNVFINGKPVDIRNPAQAIRAGIamvpedr 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 139 QTDVLDSQFTVLEMMILAANLKLGK--ELNLKQKLEVIDEILGMLRLKDTLNTMA-QKLSGGERKRLCIALELVNNPPVI 215
Cdd:TIGR02633 346 KRHGIVPILGVGKNITLSVLKSFCFkmRIDAAAELQIIGSAIQRLKVKTASPFLPiGRLSGGNQQKAVLAKMLLTNPRVL 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 216 FLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICsIHTPSAKIFEMLDAVYVLAEGQ 271
Cdd:TIGR02633 426 ILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIV-VSSELAEVLGLSDRVLVIGEGK 480
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
72-226 |
1.40e-08 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 55.88 E-value: 1.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 72 TKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPrdmRVFRKMSRYIMQTDVLDSQ 146
Cdd:PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLisptsGTLLFEGEDISTLKP---EIYRQQVSYCAQTPTLFGD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 147 fTVLEMMILAANLKlgkelnlKQKLEvideilgMLRLKDTL------NTMAQK----LSGGERKRLCIALELVNNPPVIF 216
Cdd:PRK10247 96 -TVYDNLIFPWQIR-------NQQPD-------PAIFLDDLerfalpDTILTKniaeLSGGEKQRISLIRNLQFMPKVLL 160
|
170
....*....|
gi 24580545 217 LDEPTTGLDD 226
Cdd:PRK10247 161 LDEITSALDE 170
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
96-273 |
1.51e-08 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 57.72 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 96 GAGKTTLLNLLagFGAV-CESGEILVN------NSPRD-MR---VF----RKmsryimqTD--VLDsqFTVLEMMILAAN 158
Cdd:COG1129 288 GAGRTELARAL--FGADpADSGEIRLDgkpvriRSPRDaIRagiAYvpedRK-------GEglVLD--LSIRENITLASL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 159 LKLGKE--LNLKQKLEVIDEILGMLRLK-DTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIAL 235
Cdd:COG1129 357 DRLSRGglLDRRRERALAEEYIKRLRIKtPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRL 436
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 24580545 236 LKVLAAGGRTVICSihtpSAKIFEML---DAVYVLAEGQCV 273
Cdd:COG1129 437 IRELAAEGKAVIVI----SSELPELLglsDRILVMREGRIV 473
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
91-225 |
1.76e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 57.64 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 91 IIGPSGAGKTTLLNLLAGfGAVCESGEILVNNSPrdmrvfrKMSrYIMQT-DVLDSQFTVLEmmilaanlklgkelnlkq 169
Cdd:TIGR03719 353 VIGPNGAGKSTLFRMITG-QEQPDSGTIEIGETV-------KLA-YVDQSrDALDPNKTVWE------------------ 405
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24580545 170 kleVIDEILGMLRL-KDTLNTMA------------QK----LSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:TIGR03719 406 ---EISGGLDIIKLgKREIPSRAyvgrfnfkgsdqQKkvgqLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
90-271 |
1.84e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 57.32 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDmrvfrkmSR-----YIMQTDVLDSQFTVlemmilAANL 159
Cdd:PRK10762 34 ALVGENGAGKSTMMKVLTGIytrdaGSILYLGKEVTFNGPKS-------SQeagigIIHQELNLIPQLTI------AENI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 160 KLGKE-------LNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQC 232
Cdd:PRK10762 101 FLGREfvnrfgrIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
|
170 180 190
....*....|....*....|....*....|....*....
gi 24580545 233 IALLKVLAAGGRTvICSIHTPSAKIFEMLDAVYVLAEGQ 271
Cdd:PRK10762 181 FRVIRELKSQGRG-IVYISHRLKEIFEICDDVTVFRDGQ 218
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
161-277 |
2.05e-08 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 56.67 E-value: 2.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 161 LGKELNLKQK--LEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKV 238
Cdd:NF000106 110 IGR*LDLSRKdaRARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRS 189
|
90 100 110
....*....|....*....|....*....|....*....
gi 24580545 239 LAAGGRTVICSIHTpSAKIFEMLDAVYVLAEGQCVYQGK 277
Cdd:NF000106 190 MVRDGATVLLTTQY-MEEAEQLAHELTVIDRGRVIADGK 227
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
87-282 |
2.16e-08 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 56.97 E-value: 2.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMR-VFRKMSRYIMQTDVLDSQFTVLEmmilaaNLK 160
Cdd:PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLieptrGQVLIDGVDIAKISDAELReVRRKKIAMVFQSFALMPHMTVLD------NTA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 161 LGKELNLKQKLEVIDEILGMLR---LKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCI-ALL 236
Cdd:PRK10070 129 FGMELAGINAEERREKALDALRqvgLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQdELV 208
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24580545 237 KVLAAGGRTVICSIHTPSAKIfEMLDAVYVLAEGQCVYQGKGSNIV 282
Cdd:PRK10070 209 KLQAKHQRTIVFISHDLDEAM-RIGDRIAIMQNGEVVQVGTPDEIL 253
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
81-239 |
2.29e-08 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 55.49 E-value: 2.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 81 GMFHSHELTAIIGPSGAGKTTLLNLLAGfGAVCESGEILVNNSprdmrvfrKMSrYIMQTDVLDSQFTVLEMMilaanlk 160
Cdd:cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAG-VLKPDEGDIEIELD--------TVS-YKPQYIKADYEGTVRDLL------- 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24580545 161 LGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDdlsSSQCIALLKVL 239
Cdd:cd03237 83 SSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD---VEQRLMASKVI 158
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
91-225 |
2.74e-08 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 57.05 E-value: 2.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 91 IIGPSGAGKTTLLNLLAGFgavcE---SGEILVNNSprdmrVfrKMSrYIMQT-DVLDSQFTVLEmmilaanlklgkeln 166
Cdd:PRK11819 355 IIGPNGAGKSTLFKMITGQ----EqpdSGTIKIGET-----V--KLA-YVDQSrDALDPNKTVWE--------------- 407
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 167 lkqkleVIDEILGMLRL-KDTLNTMA------------QK----LSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK11819 408 ------EISGGLDIIKVgNREIPSRAyvgrfnfkggdqQKkvgvLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
87-276 |
2.78e-08 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 55.48 E-value: 2.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKT----TLLNLL-AGFGAVceSGEILVNNSPRDMRVFR-KMSRYIMQTDvlDSQFTVLEMMILAAN-- 158
Cdd:PRK10418 30 RVLALVGGSGSGKSltcaAALGILpAGVRQT--AGRVLLDGKPVAPCALRgRKIATIMQNP--RSAFNPLHTMHTHARet 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 159 -LKLGKELNLKQKLEVIDEIlGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALL- 236
Cdd:PRK10418 106 cLALGKPADDATLTAALEAV-GLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLe 184
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 24580545 237 KVLAAGGRTVICSIHTPSAkIFEMLDAVYVLAEGQCVYQG 276
Cdd:PRK10418 185 SIVQKRALGMLLVTHDMGV-VARLADDVAVMSHGRIVEQG 223
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
91-225 |
3.82e-08 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 54.73 E-value: 3.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 91 IIGPSGAGKTTLLNLLAGFGAVcESGEILvnnSPRDMRVfrkmsRYIMQTDVLDSQ--FTVLEMMILAANLKLGKelnlk 168
Cdd:PRK09544 35 LLGPNGAGKSTLVRVVLGLVAP-DEGVIK---RNGKLRI-----GYVPQKLYLDTTlpLTVNRFLRLRPGTKKED----- 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 169 qklevIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK09544 101 -----ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
91-258 |
4.29e-08 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 53.31 E-value: 4.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 91 IIGPSGAGKTTLLNLLAG---FGavceSGEIlvnNSPRDMRVFrkmsrYIMQtdvldsqftvlemmilAANLKLGkelNL 167
Cdd:cd03223 32 ITGPSGTGKSSLFRALAGlwpWG----SGRI---GMPEGEDLL-----FLPQ----------------RPYLPLG---TL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 168 KQKLevideilgmlrlkdtLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQciaLLKVLAAGGRTVI 247
Cdd:cd03223 81 REQL---------------IYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDR---LYQLLKELGITVI 142
|
170
....*....|..
gi 24580545 248 cSI-HTPSAKIF 258
Cdd:cd03223 143 -SVgHRPSLWKF 153
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
70-281 |
4.47e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 56.18 E-value: 4.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 70 SKTKTiLRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEiLVNNSPRDMRV-FRKMSRYIMQ------TDV 142
Cdd:PRK10938 14 SDTKT-LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL-LSGE-RQSQFSHITRLsFEQLQKLVSDewqrnnTDM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 143 L-----DSQFTVLEMMILAAnlklgKELNLKQKLEvidEILGMLRLkdtLNTMAQKLSGGE-RKR-LCIALelVNNPPVI 215
Cdd:PRK10938 91 LspgedDTGRTTAEIIQDEV-----KDPARCEQLA---QQFGITAL---LDRRFKYLSTGEtRKTlLCQAL--MSEPDLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 216 FLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICsIHTPSAKIFEMLDAVYVLAEGQCVYQGKGSNI 281
Cdd:PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQSGITLVL-VLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
89-225 |
4.82e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 56.33 E-value: 4.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 89 TAIIGPSGAGKTTLLNLLAG-----FGAVCESGEI------------------LVNNsprDMRVFRKmSRYImqtDVLDS 145
Cdd:COG1245 102 TGILGPNGIGKSTALKILSGelkpnLGDYDEEPSWdevlkrfrgtelqdyfkkLANG---EIKVAHK-PQYV---DLIPK 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 146 QF--TVlemmilaanlklgKELnLKQKLE--VIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPT 221
Cdd:COG1245 175 VFkgTV-------------REL-LEKVDErgKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPS 240
|
....
gi 24580545 222 TGLD 225
Cdd:COG1245 241 SYLD 244
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
90-231 |
5.37e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 56.29 E-value: 5.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKTTLLNLLAGFGAVcESGEILV-NNSPRDMRVFRKMSRYI--M-QtdvldsqftvlemmilaanlKLGKel 165
Cdd:NF033858 31 GLIGPDGVGKSSLLSLIAGARKI-QQGRVEVlGGDMADARHRRAVCPRIayMpQ--------------------GLGK-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 166 NLKQKLEV---------------------IDEIL---GMLRLKDTLntmAQKLSGGERKR--LCIALelVNNPPVIFLDE 219
Cdd:NF033858 88 NLYPTLSVfenldffgrlfgqdaaerrrrIDELLratGLAPFADRP---AGKLSGGMKQKlgLCCAL--IHDPDLLILDE 162
|
170
....*....|..
gi 24580545 220 PTTGLDDLSSSQ 231
Cdd:NF033858 163 PTTGVDPLSRRQ 174
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
87-271 |
5.66e-08 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 55.95 E-value: 5.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNN---SPRD-MRVFRKMSRYIMQT---DVLDSQFTVLEMMILAANL 159
Cdd:PRK09700 290 EILGFAGLVGSGRTELMNCLFGVDKR-AGGEIRLNGkdiSPRSpLDAVKKGMAYITESrrdNGFFPNFSIAQNMAISRSL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 160 KLGKE------LNLKQKLEVIDEILGMLRLK-DTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQC 232
Cdd:PRK09700 369 KDGGYkgamglFHEVDEQRTAENQRELLALKcHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI 448
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 24580545 233 IALLKVLAAGGRTVI-CSIHTPsaKIFEMLDAVYVLAEGQ 271
Cdd:PRK09700 449 YKVMRQLADDGKVILmVSSELP--EIITVCDRIAVFCEGR 486
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
85-251 |
1.27e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 55.42 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 85 SHELTAIIGPSGAGKTTLLNLLAGFGAVCESGEILVNN-----------------------------------SPRDMRV 129
Cdd:PTZ00265 1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNehtndmtneqdyqgdeeqnvgmknvnefsltkeggSGEDSTV 1272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 130 FRKMSRYIMQ-TDVLD-------------SQFTVLEMMILAANLKLGKELNLKQ------KLEVIDEILGMLRLKDTLNT 189
Cdd:PTZ00265 1273 FKNSGKILLDgVDICDynlkdlrnlfsivSQEPMLFNMSIYENIKFGKEDATREdvkracKFAAIDEFIESLPNKYDTNV 1352
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 190 --MAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDlSSSQCI--ALLKVLAAGGRTVICSIH 251
Cdd:PTZ00265 1353 gpYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS-NSEKLIekTIVDIKDKADKTIITIAH 1417
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
73-225 |
1.40e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 54.51 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG-----FGAV--CESGEI------LVNNSPRDMRVFRKMSRYIMQ 139
Cdd:PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGelepdSGTVkwSENANIgyyaqdHAYDFENDLTLFDWMSQWRQE 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 140 TDvlDSQftvlemmilaanlklgkelnlkqkleVIDEILG-MLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLD 218
Cdd:PRK15064 412 GD--DEQ--------------------------AVRGTLGrLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD 463
|
....*..
gi 24580545 219 EPTTGLD 225
Cdd:PRK15064 464 EPTNHMD 470
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
24-219 |
1.66e-07 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 54.21 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 24 INADSLEPDqSEDFQTVlglKYLPSWPAvnLQFSELCYVVPDQTNAsktktiLRRVNGMFHSHELTAIIGPSGAGKTTLL 103
Cdd:PRK10522 299 LNKLALAPY-KAEFPRP---QAFPDWQT--LELRNVTFAYQDNGFS------VGPINLTIKRGELLFLIGGNGSGKSTLA 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 104 NLLAG-FGAVceSGEILVNNSP---RDMRVFRKMSRYIMqTDV------LDSQFTVLEMMILAANLKlgkELNLKQKLEV 173
Cdd:PRK10522 367 MLLTGlYQPQ--SGEILLDGKPvtaEQPEDYRKLFSAVF-TDFhlfdqlLGPEGKPANPALVEKWLE---RLKMAHKLEL 440
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24580545 174 IDEilgmlRLKDTlntmaqKLSGGERKRLCIALELVNNPPVIFLDE 219
Cdd:PRK10522 441 EDG-----RISNL------KLSKGQKKRLALLLALAEERDILLLDE 475
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
85-216 |
1.75e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.83 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 85 SHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSPRDMRVFRKMSRYIMQTDVLDSQFTVLEMMILAANLKlgke 164
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARE-LGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR---- 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 24580545 165 lNLKQKLEVIDEILGMLRLKdtlntMAQKLSGGERKRLCIALELVNNPPVIF 216
Cdd:smart00382 76 -KLKPDVLILDEITSLLDAE-----QEALLLLLEELRLLLLLKSEKNLTVIL 121
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
87-225 |
1.94e-07 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 53.57 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFgavcE---SGEILVNNspRDMrvfrkMSRYIMQTD---VLDSqFTVLEMMILAANLK 160
Cdd:PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGL----EkptEGQIFIDG--EDV-----THRSIQQRDicmVFQS-YALFPHMSLGENVG 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 161 LGKELNLKQKLEV---IDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK11432 101 YGLKMLGVPKEERkqrVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
87-281 |
2.04e-07 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 53.21 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTtlLNLLAGFGAVCESGEILVNNSPRDMRVFRKMS----RYIMQTDV----------LDSQFTVlEM 152
Cdd:PRK11022 34 EVVGIVGESGSGKS--VSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISekerRNLVGAEVamifqdpmtsLNPCYTV-GF 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 153 MILAAnLKLGKELNLKQKLEVIDEILGMLRLKDT---LNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSS 229
Cdd:PRK11022 111 QIMEA-IKVHQGGNKKTRRQRAIDLLNQVGIPDPasrLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQ 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 24580545 230 SQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAEGQCVYQGKGSNI 281
Cdd:PRK11022 190 AQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
73-226 |
2.21e-07 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 54.04 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG---FGavceSGEILVnnsPRDMRvfrkmsryimqtdvldsqftv 149
Cdd:COG4178 376 RPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGlwpYG----SGRIAR---PAGAR--------------------- 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 150 leMMILA--ANLKLGkelNLKQKL-----------EVIDEILGMLRLK------DTLNTMAQKLSGGERKRLCIALELVN 210
Cdd:COG4178 428 --VLFLPqrPYLPLG---TLREALlypataeafsdAELREALEAVGLGhlaerlDEEADWDQVLSLGEQQRLAFARLLLH 502
|
170
....*....|....*.
gi 24580545 211 NPPVIFLDEPTTGLDD 226
Cdd:COG4178 503 KPDWLFLDEATSALDE 518
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
90-239 |
2.33e-07 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 53.92 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKT----TLLNLLAGfGAVCESGEI------LVNNSPRDMRVFR--KMSrYIMQ---TDvLDSQFTVLEMmi 154
Cdd:COG4172 40 ALVGESGSGKSvtalSILRLLPD-PAAHPSGSIlfdgqdLLGLSERELRRIRgnRIA-MIFQepmTS-LNPLHTIGKQ-- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 155 LAANLKLGKELNLKQKLEVIDEILGMLRLKDTLNTMAQ---KLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQ 231
Cdd:COG4172 115 IAEVLRLHRGLSGAAARARALELLERVGIPDPERRLDAyphQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQ 194
|
....*...
gi 24580545 232 CIALLKVL 239
Cdd:COG4172 195 ILDLLKDL 202
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
87-271 |
2.75e-07 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 53.78 E-value: 2.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLagFGA---VCEsGEILVNNSPRDMRVFRKMSRYIM-------QTDVLDSQFTVLEMMILA 156
Cdd:PRK13549 289 EILGIAGLVGAGRTELVQCL--FGAypgRWE-GEIFIDGKPVKIRNPQQAIAQGIamvpedrKRDGIVPVMGVGKNITLA 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 157 A--NLKLGKELNLKQKLEVIDEILGMLRLKdTLNTMAQ--KLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQC 232
Cdd:PRK13549 366 AldRFTGGSRIDDAAELKTILESIQRLKVK-TASPELAiaRLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEI 444
|
170 180 190
....*....|....*....|....*....|....*....
gi 24580545 233 IALLKVLAAGGRTVICsIHTPSAKIFEMLDAVYVLAEGQ 271
Cdd:PRK13549 445 YKLINQLVQQGVAIIV-ISSELPEVLGLSDRVLVMHEGK 482
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
87-225 |
3.05e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 52.43 E-value: 3.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNN---SPRDMRVFRKMSRYIMQTDvlDSQF---TVLEMmiLAANLK 160
Cdd:PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGL-LEAESGQIIIDGdllTEENVWDIRHKIGMVFQNP--DNQFvgaTVEDD--VAFGLE 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24580545 161 lGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK13650 109 -NKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
87-296 |
4.07e-07 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 51.94 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNN---SPRDMRVFRKMSRYIMQTDvlDSQF---TVlemmilAANLK 160
Cdd:PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGLLLP-EAGTITVGGmvlSEETVWDVRRQVGMVFQNP--DNQFvgaTV------QDDVA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 161 LGKELN---LKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLK 237
Cdd:PRK13635 105 FGLENIgvpREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVR 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 238 VLAAGGR-TVICSIHtpsaKIFEMLDA--VYVLAEGQCVYQGKGSNI-------------VPF-------LKNFGLCCPI 294
Cdd:PRK13635 185 QLKEQKGiTVLSITH----DLDEAAQAdrVIVMNKGEILEEGTPEEIfksghmlqeigldVPFsvklkelLKRNGILLPN 260
|
..
gi 24580545 295 TY 296
Cdd:PRK13635 261 TY 262
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
22-225 |
4.32e-07 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 53.08 E-value: 4.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 22 SDINADSLepdqsedFQTVLGLKYLPSWPAVNLQFSELCYVVPDQTNASktktiLRRVNGMFHSHELTAIIGPSGAGKTT 101
Cdd:PRK10762 226 ADLTEDSL-------IEMMVGRKLEDQYPRLDKAPGEVRLKVDNLSGPG-----VNDVSFTLRKGEILGVSGLMGAGRTE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 102 LLNLLAGF-----GAVCESGEILVNNSPRDMrvFRKMSRYIMQT---DVLDSQFTVLEMMILAAnL----KLGKELNLKQ 169
Cdd:PRK10762 294 LMKVLYGAlprtsGYVTLDGHEVVTRSPQDG--LANGIVYISEDrkrDGLVLGMSVKENMSLTA-LryfsRAGGSLKHAD 370
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 24580545 170 KLEVIDEILGMLRLKDTlnTMAQ---KLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK10762 371 EQQAVSDFIRLFNIKTP--SMEQaigLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
81-225 |
6.13e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 52.48 E-value: 6.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 81 GMFHSHELTAIIGPSGAGKTTLLNLLAGfgaVCE--SGEIlvnnsPRDMRVFRKmSRYIMQtdvlDSQFTVLEMMILAAN 158
Cdd:COG1245 361 GEIREGEVLGIVGPNGIGKTTFAKILAG---VLKpdEGEV-----DEDLKISYK-PQYISP----DYDGTVEEFLRSANT 427
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 159 LKLGKELnlkqkleVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:COG1245 428 DDFGSSY-------YKTEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 487
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
149-247 |
6.84e-07 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 52.71 E-value: 6.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 149 VLEMMILAANLKLGKELNLKQKLE-VIDEILGMLRLKDTLNTmaqkLSGGERKRLCIALEL---VNNPPVIFLDEPTTGL 224
Cdd:TIGR00630 788 VLDMTVEEAYEFFEAVPSISRKLQtLCDVGLGYIRLGQPATT----LSGGEAQRIKLAKELskrSTGRTLYILDEPTTGL 863
|
90 100
....*....|....*....|....*
gi 24580545 225 --DDLssSQCIALLKVLAAGGRTVI 247
Cdd:TIGR00630 864 hfDDI--KKLLEVLQRLVDKGNTVV 886
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
61-276 |
1.10e-06 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 50.47 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 61 YVVPDQTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGfgaVCE--SGEILVNnsprdMRV--------- 129
Cdd:COG1134 27 LLLRRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAG---ILEptSGRVEVN-----GRVsallelgag 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 130 FrkmsryimqtdvlDSQFTVLEMMILAANLkLGkeLNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELV 209
Cdd:COG1134 99 F-------------HPELTGRENIYLNGRL-LG--LSRKEIDEKFDEIVEFAELGDFIDQPVKTYSSGMRARLAFAVATA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 210 NNPPVIFLDEPT-TGldDLSSSQ-CIALLKVLAAGGRTVI-CSiHTPSAkIFEMLDAVYVLAEGQCVYQG 276
Cdd:COG1134 163 VDPDILLVDEVLaVG--DAAFQKkCLARIRELRESGRTVIfVS-HSMGA-VRRLCDRAIWLEKGRLVMDG 228
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
91-225 |
1.23e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 51.47 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 91 IIGPSGAGKTTLLNLLAG----FgavceSGEILVnnSPrDMRVfrkmsRYIMQTDVLDSQFTVLE--MMILAANLKLGKE 164
Cdd:TIGR03719 36 VLGLNGAGKSTLLRIMAGvdkdF-----NGEARP--QP-GIKV-----GYLPQEPQLDPTKTVREnvEEGVAEIKDALDR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 165 LN----------------LKQKLEVIDEI-------------LGM--LRLKDTlNTMAQKLSGGERKRLCIALELVNNPP 213
Cdd:TIGR03719 103 FNeisakyaepdadfdklAAEQAELQEIIdaadawdldsqleIAMdaLRCPPW-DADVTKLSGGERRRVALCRLLLSKPD 181
|
170
....*....|..
gi 24580545 214 VIFLDEPTTGLD 225
Cdd:TIGR03719 182 MLLLDEPTNHLD 193
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
141-247 |
1.34e-06 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 51.95 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 141 DVLDsqFTVLEMMILAANLKlgkelNLKQKLEVIDEI-LGMLRLKDTLNTmaqkLSGGERKRLCIALEL--VNNPPVIF- 216
Cdd:COG0178 784 DVLD--MTVEEALEFFENIP-----KIARKLQTLQDVgLGYIKLGQPATT----LSGGEAQRVKLASELskRSTGKTLYi 852
|
90 100 110
....*....|....*....|....*....|....*..
gi 24580545 217 LDEPTTGL--DDlsssqcIA-LLKV---LAAGGRTVI 247
Cdd:COG0178 853 LDEPTTGLhfHD------IRkLLEVlhrLVDKGNTVV 883
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
75-225 |
1.85e-06 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 49.33 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLnlLAGFGAV-CESGEILVNN---SPRDMRVFRKMSRYIMQTDVLdsqftvl 150
Cdd:cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLI--LALFRFLeAEEGKIEIDGidiSTIPLEDLRSSLTIIPQDPTL------- 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 151 emmiLAANLKLgkelNLKQKLEVID-EILGMLRLKDT-LNtmaqkLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:cd03369 94 ----FSGTIRS----NLDPFDEYSDeEIYGALRVSEGgLN-----LSQGQRQLLCLARALLKRPRVLVLDEATASID 157
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
88-247 |
2.73e-06 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 49.54 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 88 LTAIIGPSGAGKTTLLN---------LLAGFGAVCESGE-----------ILVNNSP--RDMR--------VF---RKM- 133
Cdd:cd03271 23 LTCVTGVSGSGKSSLINdtlypalarRLHLKKEQPGNHDrieglehidkvIVIDQSPigRTPRsnpatytgVFdeiRELf 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 134 ------SRYIMQT-DVL---DSQFTVLEMMILAANLKLGKELNLKQKLEVIDEI-LGMLRLKDTLNTmaqkLSGGERKRL 202
Cdd:cd03271 103 cevckgKRYNRETlEVRykgKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVgLGYIKLGQPATT----LSGGEAQRI 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 24580545 203 CIALELVN---NPPVIFLDEPTTGL--DDLssSQCIALLKVLAAGGRTVI 247
Cdd:cd03271 179 KLAKELSKrstGKTLYILDEPTTGLhfHDV--KKLLEVLQRLVDKGNTVV 226
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
73-245 |
2.89e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 50.40 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 73 KTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG------------FGAVCESGEIL---------VNNSPR-DMRVf 130
Cdd:PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGdhpqgysndltlFGRRRGSGETIwdikkhigyVSSSLHlDYRV- 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 131 rkmsryimQTDVLDsqftvlemMILAA---NLKLGKELNLKQKLEViDEILGMLRLKDTL-NTMAQKLSGGERKRLCIAL 206
Cdd:PRK10938 352 --------STSVRN--------VILSGffdSIGIYQAVSDRQQKLA-QQWLDILGIDKRTaDAPFHSLSWGQQRLALIVR 414
|
170 180 190
....*....|....*....|....*....|....*....
gi 24580545 207 ELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRT 245
Cdd:PRK10938 415 ALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGET 453
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
93-251 |
6.23e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 47.64 E-value: 6.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 93 GPSGAGKTTLLNLLAGFgAVCESGEILV--NNSPRDMRVFRKMSRYIMQTDVLDSQFTVLEMMILAANLKLGkelNLKqk 170
Cdd:PRK13540 34 GSNGAGKTTLLKLIAGL-LNPEKGEILFerQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPG---AVG-- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 171 levIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSI 250
Cdd:PRK13540 108 ---ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTS 184
|
.
gi 24580545 251 H 251
Cdd:PRK13540 185 H 185
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
87-236 |
6.65e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 49.47 E-value: 6.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTT----LLNLL-AGFGAVCESGEILVNNSPRDMRVFRKMSRYIMQTDV--LDSQFTVLEMMIlaANL 159
Cdd:PRK10261 351 ETLSLVGESGSGKSTtgraLLRLVeSQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYasLDPRQTVGDSIM--EPL 428
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 160 KLGKELNLKQKLEVIDEILGMLRLK-DTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALL 236
Cdd:PRK10261 429 RVHGLLPGKAAAARVAWLLERVGLLpEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLL 506
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
87-236 |
7.69e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 48.17 E-value: 7.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRvfRKMSRYIMQTDvldSQFTvleMMILAANLKL 161
Cdd:PRK13642 34 EWVSIIGQNGSGKSTTARLIDGLfeefeGKVKIDGELLTAENVWNLR--RKIGMVFQNPD---NQFV---GATVEDDVAF 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24580545 162 GKE---LNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALL 236
Cdd:PRK13642 106 GMEnqgIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
83-265 |
7.73e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 46.58 E-value: 7.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 83 FHSHELTAIIGPSGAGKTTLLNllagfgAVCesgeilvnnsprdmrvfrkmsrYImqtdvldsqftvlemmILAANLKLG 162
Cdd:cd03227 18 FGEGSLTIITGPNGSGKSTILD------AIG----------------------LA----------------LGGAQSATR 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 163 KELNLKQKLEVIDEILgmlrlkdTLNTMAQKLSGGERKRLCIALEL----VNNPPVIFLDEPTTGLDDLSSSQCIALLKV 238
Cdd:cd03227 54 RRSGVKAGCIVAAVSA-------ELIFTRLQLSGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQALAEAILE 126
|
170 180
....*....|....*....|....*..
gi 24580545 239 LAAGGRTVICSIHTPsaKIFEMLDAVY 265
Cdd:cd03227 127 HLVKGAQVIVITHLP--ELAELADKLI 151
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
87-271 |
7.75e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 49.16 E-value: 7.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAG---FGAVceSGEILVNNSPRDMRVFRKMSR----YIMQTDVLDSQFTVLEMMILAANL 159
Cdd:PRK13549 32 EIVSLCGENGAGKSTLMKVLSGvypHGTY--EGEIIFEGEELQASNIRDTERagiaIIHQELALVKELSVLENIFLGNEI 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 160 KLGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVL 239
Cdd:PRK13549 110 TPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL 189
|
170 180 190
....*....|....*....|....*....|..
gi 24580545 240 AAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQ 271
Cdd:PRK13549 190 KAHGIACIYISHKLN-EVKAISDTICVIRDGR 220
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
67-293 |
1.56e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 47.39 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 67 TNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTL---LNLLAgfgaVCESGEILVNN----SPRDMRVFRKMSRYIMQ 139
Cdd:PRK13633 17 NEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIakhMNALL----IPSEGKVYVDGldtsDEENLWDIRNKAGMVFQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 140 TDvlDSQftvLEMMILAANLKLGKElNLKQKLEVI----DEIL---GMLRLKDTLNTMaqkLSGGERKRLCIALELVNNP 212
Cdd:PRK13633 93 NP--DNQ---IVATIVEEDVAFGPE-NLGIPPEEIrervDESLkkvGMYEYRRHAPHL---LSGGQKQRVAIAGILAMRP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 213 PVIFLDEPTTGLDDLSSSQCIALLKVLAAG-GRTVICSIHTpsakIFEMLDA--VYVLAEGQCVYQGKGSNI---VPFLK 286
Cdd:PRK13633 164 ECIIFDEPTAMLDPSGRREVVNTIKELNKKyGITIILITHY----MEEAVEAdrIIVMDSGKVVMEGTPKEIfkeVEMMK 239
|
....*..
gi 24580545 287 NFGLCCP 293
Cdd:PRK13633 240 KIGLDVP 246
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
87-225 |
1.90e-05 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 47.88 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAGfgaVCE--SGEILVnnsprDMRVFRKmSRYImqtdVLDSQFTVlemmilaanlklgkE 164
Cdd:PRK13409 366 EVIGIVGPNGIGKTTFAKLLAG---VLKpdEGEVDP-----ELKISYK-PQYI----KPDYDGTV--------------E 418
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 165 LNLKQKLEVID------EILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK13409 419 DLLRSITDDLGssyyksEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
74-250 |
1.95e-05 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 47.03 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 74 TILRRVNGMFHSHELTAIIGPSGAGKT----TLLNLLAGFG-----AVCESGEILvNNSPRDMRVFR--KMSrYIMQTDV 142
Cdd:PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSqtafALMGLLAANGriggsATFNGREIL-NLPEKELNKLRaeQIS-MIFQDPM 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 143 --LDSQFTVLEMmiLAANLKLGKELNlkqKLEVIDEILGML------RLKDTLNTMAQKLSGGERKRLCIALELVNNPPV 214
Cdd:PRK09473 108 tsLNPYMRVGEQ--LMEVLMLHKGMS---KAEAFEESVRMLdavkmpEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKL 182
|
170 180 190
....*....|....*....|....*....|....*.
gi 24580545 215 IFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSI 250
Cdd:PRK09473 183 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMI 218
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
90-225 |
2.93e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 46.50 E-value: 2.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKTTLLNLLAGF-----GAVCESGEILVNNSPRDMRVFRKMSRYIMQTDV--LDSQFTVLEmmILAANLKLG 162
Cdd:PRK11308 45 AVVGESGCGKSTLARLLTMIetptgGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYgsLNPRKKVGQ--ILEEPLLIN 122
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24580545 163 KELNLKQKLEVIDEILGMLRLK----DTLNTMaqkLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK11308 123 TSLSAAERREKALAMMAKVGLRpehyDRYPHM---FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
191-271 |
3.22e-05 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 46.97 E-value: 3.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 191 AQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICsIHTPSAKIFEMLDAVYVLAEG 270
Cdd:PRK15439 401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF-ISSDLEEIEQMADRVLVMHQG 479
|
.
gi 24580545 271 Q 271
Cdd:PRK15439 480 E 480
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
87-273 |
3.33e-05 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 47.13 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 87 ELTAIIGPSGAGKTTLLNLLAG-FGAVCESGEILVNNSPRDMRVFRKMSR----YIMQTDVLDSQFTVLEmmilaaNLKL 161
Cdd:TIGR02633 28 ECVGLCGENGAGKSTLMKILSGvYPHGTWDGEIYWSGSPLKASNIRDTERagivIIHQELTLVPELSVAE------NIFL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 162 GKELNLKQKLEVID-------EILGMLRLKDTLNTMA-QKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCI 233
Cdd:TIGR02633 102 GNEITLPGGRMAYNamylrakNLLRELQLDADNVTRPvGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILL 181
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24580545 234 ALLKVLAAGGRTVICSIHtpsaKIFE---MLDAVYVLAEGQCV 273
Cdd:TIGR02633 182 DIIRDLKAHGVACVYISH----KLNEvkaVCDTICVIRDGQHV 220
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
83-219 |
3.37e-05 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 47.10 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 83 FHSHELTAIIGPSGAGKTTLLNLLAGFGAvCESGEILVNNSP---RDMRVFRKM-----------SRYI-MQTDVLDSQF 147
Cdd:COG4615 355 IRRGELVFIVGGNGSGKSTLAKLLTGLYR-PESGEILLDGQPvtaDNREAYRQLfsavfsdfhlfDRLLgLDGEADPARA 433
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24580545 148 TVLEmmilaanlklgKELNLKQKLEVIDEilgmlRLKDTlntmaqKLSGGERKRLCIALELVNNPPVIFLDE 219
Cdd:COG4615 434 RELL-----------ERLELDHKVSVEDG-----RFSTT------DLSQGQRKRLALLVALLEDRPILVFDE 483
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
66-254 |
4.26e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 44.86 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 66 QTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRDmRVFRKMSRYIMQTDVLDS 145
Cdd:PRK13541 6 QLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-SSGNIYYKNCNIN-NIAKPYCTYIGHNLGLKL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 146 QFTVLEmmilaaNLKLGKELnlKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK13541 84 EMTVFE------NLKFWSEI--YNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155
|
170 180
....*....|....*....|....*....
gi 24580545 226 DLSSSQCIALLKVLAAGGRTVICSIHTPS 254
Cdd:PRK13541 156 KENRDLLNNLIVMKANSGGIVLLSSHLES 184
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
165-228 |
5.17e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 46.95 E-value: 5.17e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24580545 165 LNLKQKLEVIDEILGMLRLKDTL-NTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLS 228
Cdd:PTZ00265 550 VDVSKKVLIHDFVSALPDKYETLvGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
91-225 |
9.16e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 45.49 E-value: 9.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 91 IIGPSGAGKTTLLNLLAG----FgavceSGEILVnnSPrDMRVfrkmsRYIMQTDVLDSQFTVLEMMILAanlkLGKELN 166
Cdd:PRK11819 38 VLGLNGAGKSTLLRIMAGvdkeF-----EGEARP--AP-GIKV-----GYLPQEPQLDPEKTVRENVEEG----VAEVKA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 167 LKQKLEVIDEILG------------MLRLKDTLNT-----------MA-------------QKLSGGERKRLCIALELVN 210
Cdd:PRK11819 101 ALDRFNEIYAAYAepdadfdalaaeQGELQEIIDAadawdldsqleIAmdalrcppwdakvTKLSGGERRRVALCRLLLE 180
|
170
....*....|....*
gi 24580545 211 NPPVIFLDEPTTGLD 225
Cdd:PRK11819 181 KPDMLLLDEPTNHLD 195
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
86-225 |
1.30e-04 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 45.33 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 86 HELTAIIGPSGAGKTTLLNLLAGfGAVCESGEILVNNS----------PRDMR--VFRKMSRYIM-QTDVLDSQFTVLEM 152
Cdd:PRK11147 29 NERVCLVGRNGAGKSTLMKILNG-EVLLDDGRIIYEQDlivarlqqdpPRNVEgtVYDFVAEGIEeQAEYLKRYHDISHL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 153 MILAANLKLGKEL-NLKQKLEV---------IDEILGMLRLkdTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTT 222
Cdd:PRK11147 108 VETDPSEKNLNELaKLQEQLDHhnlwqlenrINEVLAQLGL--DPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTN 185
|
...
gi 24580545 223 GLD 225
Cdd:PRK11147 186 HLD 188
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
194-251 |
2.35e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 44.82 E-value: 2.35e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24580545 194 LSGGERKRLCIALELVN---NPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIH 251
Cdd:PRK00635 810 LSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
77-254 |
3.50e-04 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 43.73 E-value: 3.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 77 RRVNGMFH-----------SHELTAIIGPSGAGKTTLLNLLAGFgAVCESGEILVNNSprdmrvfrkmSRYIMQTDVLDS 145
Cdd:PRK13545 30 RSKDGEYHyalnnisfevpEGEIVGIIGLNGSGKSTLSNLIAGV-TMPNKGTVDIKGS----------AALIAISSGLNG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 146 QFTVLEMMILAAnLKLGkeLNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:PRK13545 99 QLTGIENIELKG-LMMG--LTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD 175
|
170 180
....*....|....*....|....*....
gi 24580545 226 DLSSSQCIALLKVLAAGGRTVICSIHTPS 254
Cdd:PRK13545 176 QTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
75-277 |
4.74e-04 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 43.12 E-value: 4.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 75 ILRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAGFGAVcESGEILVNNSPRdmrvFR-------KMSRYIM-QTDVLDSQ 146
Cdd:PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-DSGTLEIGGNPC----ARltpakahQLGIYLVpQEPLLFPN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 147 FTVLEmMILaanLKLGKELNLKQKLEvidEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDD 226
Cdd:PRK15439 101 LSVKE-NIL---FGLPKRQASMQKMK---QLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTP 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 24580545 227 LSSSQCIALLKVLAAGGRTVICSIHTPSaKIFEMLDAVYVLAEGQCVYQGK 277
Cdd:PRK15439 174 AETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGK 223
|
|
| YjeQ_EngC |
cd01854 |
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ... |
89-118 |
7.30e-04 |
|
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.
Pssm-ID: 206747 [Multi-domain] Cd Length: 211 Bit Score: 41.23 E-value: 7.30e-04
10 20 30
....*....|....*....|....*....|
gi 24580545 89 TAIIGPSGAGKTTLLNLLAGfGAVCESGEI 118
Cdd:cd01854 88 SVLVGQSGVGKSTLLNALLP-ELVLATGEI 116
|
|
| VirB4_CagE |
TIGR00929 |
type IV secretion/conjugal transfer ATPase, VirB4 family; Type IV secretion systems are found ... |
83-107 |
8.39e-04 |
|
type IV secretion/conjugal transfer ATPase, VirB4 family; Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Pssm-ID: 273346 [Multi-domain] Cd Length: 785 Bit Score: 42.69 E-value: 8.39e-04
10 20 30
....*....|....*....|....*....|
gi 24580545 83 FHSHEL-----TAIIGPSGAGKTTLLNLLA 107
Cdd:TIGR00929 426 FHVRDAkvlghTLIFGPTGSGKTTLLNFLL 455
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
184-273 |
9.95e-04 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 41.71 E-value: 9.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 184 KDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHTPSAKIFEMLDA 263
Cdd:PRK15093 149 KDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADK 228
|
90
....*....|
gi 24580545 264 VYVLAEGQCV 273
Cdd:PRK15093 229 INVLYCGQTV 238
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
72-273 |
1.07e-03 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 42.08 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 72 TKTI-----LRRVNGMFHSHELTAIIGPSGAGKTTLLNLLAG---FGAVceSGEILVNNSPRDMRVFRKMSRY----IMQ 139
Cdd:NF040905 8 TKTFpgvkaLDDVNLSVREGEIHALCGENGAGKSTLMKVLSGvypHGSY--EGEILFDGEVCRFKDIRDSEALgiviIHQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 140 TDVLdsqftVLEMMIlAANLKLGKElnlKQKLEVID---------EILGMLRLKDTLNTMAQKLSGGERKRLCIALELVN 210
Cdd:NF040905 86 ELAL-----IPYLSI-AENIFLGNE---RAKRGVIDwnetnrrarELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24580545 211 NPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSIHtpsaK---IFEMLDAVYVLAEGQCV 273
Cdd:NF040905 157 DVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSIIISH----KlneIRRVADSITVLRDGRTI 218
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
92-225 |
1.18e-03 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 42.03 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 92 IGPSGAGKTTLLNLLAG-----------FGAVcesgeilVNnsPRDMRVFRK---MSryimQTDVLDSQFTVLEMMILAA 157
Cdd:NF033858 298 LGSNGCGKSTTMKMLTGllpasegeawlFGQP-------VD--AGDIATRRRvgyMS----QAFSLYGELTVRQNLELHA 364
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24580545 158 NL-KLGKElnlkQKLEVIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLD 225
Cdd:NF033858 365 RLfHLPAA----EIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVD 429
|
|
| RsgA_GTPase |
pfam03193 |
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are ... |
88-118 |
1.38e-03 |
|
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are broadly conserved in bacteria and are indispensable for growth. The GTPase domain of RsgA is very similar to several P-loop GTPases, but differs in having a circular permutation of the GTPase structure described by a G4-G1-G3 pattern.
Pssm-ID: 427191 [Multi-domain] Cd Length: 174 Bit Score: 40.22 E-value: 1.38e-03
10 20 30
....*....|....*....|....*....|.
gi 24580545 88 LTAIIGPSGAGKTTLLNLLAGfGAVCESGEI 118
Cdd:pfam03193 108 TTVLAGQSGVGKSTLLNALLP-ELDLRTGEI 137
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
145-247 |
1.50e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 41.92 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 145 SQFTVLEMMILAANLKLGKElnlKQKL--EVIDEILGMLR-LKD------TLNTMAQKLSGGERKRLCIAL----ELVNn 211
Cdd:TIGR00630 434 SELSIREAHEFFNQLTLTPE---EKKIaeEVLKEIRERLGfLIDvgldylSLSRAAGTLSGGEAQRIRLATqigsGLTG- 509
|
90 100 110
....*....|....*....|....*....|....*..
gi 24580545 212 ppVIF-LDEPTTGLDDLSSSQCIALLKVLAAGGRTVI 247
Cdd:TIGR00630 510 --VLYvLDEPSIGLHQRDNRRLINTLKRLRDLGNTLI 544
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
164-247 |
1.63e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 41.94 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 164 ELNLKQKL---EVIDEILGMLR-LKD------TLNTMAQKLSGGE--RKRLCIAL--ELVNnppVIF-LDEPTTGL---- 224
Cdd:COG0178 446 ELTEREAEiaeRILKEIRSRLGfLVDvgldylTLDRSAGTLSGGEaqRIRLATQIgsGLVG---VLYvLDEPSIGLhqrd 522
|
90 100
....*....|....*....|....
gi 24580545 225 -DDLsssqcIALLKVLAAGGRTVI 247
Cdd:COG0178 523 nDRL-----IETLKRLRDLGNTVI 541
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
91-220 |
2.61e-03 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 39.05 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 91 IIGPSGAGKTTLLNLLAgfgavcesgEILVNNSPRDMRVfrKMSRyIMQTDVLDSQFTVlemmilaANLKLGKELNLKQK 170
Cdd:cd00009 24 LYGPPGTGKTTLARAIA---------NELFRPGAPFLYL--NASD-LLEGLVVAELFGH-------FLVRLLFELAEKAK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 24580545 171 LEV--IDEI--LGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEP 220
Cdd:cd00009 85 PGVlfIDEIdsLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRA 138
|
|
| dNK |
cd01673 |
Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to ... |
90-181 |
2.92e-03 |
|
Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Pssm-ID: 238836 Cd Length: 193 Bit Score: 39.52 E-value: 2.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 90 AIIGPSGAGKTTLLNLLA---GFGAVCESGEILVNNSP------RDMR-------VFRKMSRYIMQTDVLD----SQFTV 149
Cdd:cd01673 3 VVEGNIGAGKSTLAKELAehlGYEVVPEPVEPDVEGNPflekfyEDPKrwafpfqLYFLLSRLKQYKDALEhlstGQGVI 82
|
90 100 110
....*....|....*....|....*....|....*...
gi 24580545 150 LE------MMILAANLKLGkeLNLKQKLEVIDEILGML 181
Cdd:cd01673 83 LErsifsdRVFAEANLKEG--GIMKTEYDLYNELFDNL 118
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
70-282 |
4.59e-03 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 39.51 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 70 SKTKTILRRVNGMFHSHELTAIIGPSGAGKTTLLnlLAGFGAV-CESGEILVNN---SPRDMRVFRKMSRYIMQTDVLDS 145
Cdd:cd03288 31 NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVdIFDGKIVIDGidiSKLPLHTLRSRLSIILQDPILFS 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 146 ---QFTvLEMMILAANLKLGKELNLKQKLEVIDEILGMLrlkDTLNTMA-QKLSGGERKRLCIALELVNNPPVIFLDEPT 221
Cdd:cd03288 109 gsiRFN-LDPECKCTDDRLWEALEIAQLKNMVKSLPGGL---DAVVTEGgENFSVGQRQLFCLARAFVRKSSILIMDEAT 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24580545 222 TGLdDLSSSQCIALLKVLAAGGRTVICSIHtpsaKIFEMLDA--VYVLAEGQCVYQGKGSNIV 282
Cdd:cd03288 185 ASI-DMATENILQKVVMTAFADRTVVTIAH----RVSTILDAdlVLVLSRGILVECDTPENLL 242
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
85-241 |
4.60e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 39.99 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 85 SHELTAIIGPSGAGKTTLLNLLAgfgavcesgeiLVNNSPRDMRV----FRKMSRYIMQTDVLDSQFTVLEMMILAANLK 160
Cdd:COG3593 22 SDDLTVLVGENNSGKSSILEALR-----------LLLGPSSSRKFdeedFYLGDDPDLPEIEIELTFGSLLSRLLRLLLK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 161 LGKELNLKQKLEVIDEILGML--RLKDTLNTMAQKLSGGERKRLCIALELVNNPP----VIFLDEPTTGLDDLSS-SQCI 233
Cdd:COG3593 91 EEDKEELEEALEELNEELKEAlkALNELLSEYLKELLDGLDLELELSLDELEDLLkslsLRIEDGKELPLDRLGSgFQRL 170
|
....*...
gi 24580545 234 ALLKVLAA 241
Cdd:COG3593 171 ILLALLSA 178
|
|
| PRK00098 |
PRK00098 |
GTPase RsgA; Reviewed |
89-118 |
5.81e-03 |
|
GTPase RsgA; Reviewed
Pssm-ID: 234631 [Multi-domain] Cd Length: 298 Bit Score: 39.42 E-value: 5.81e-03
10 20 30
....*....|....*....|....*....|
gi 24580545 89 TAIIGPSGAGKTTLLNLLAGfGAVCESGEI 118
Cdd:PRK00098 167 TVLAGQSGVGKSTLLNALAP-DLELKTGEI 195
|
|
| YadH |
COG0842 |
ABC-type multidrug transport system, permease component [Defense mechanisms]; |
473-552 |
6.44e-03 |
|
ABC-type multidrug transport system, permease component [Defense mechanisms];
Pssm-ID: 440604 [Multi-domain] Cd Length: 200 Bit Score: 38.26 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 473 AAMVTSKLPSMFILAVIYLSIVYLMSS----QPLEWFRFAMLFTIAFVTALTSDSFGLLISSRL-SLVNAMFMGPVLAVP 547
Cdd:COG0842 46 LEILLGKVLAYLLRGLLQALLVLLVALlffgVPLRGLSLLLLLLVLLLFALAFSGLGLLISTLArSQEQASAISNLVILP 125
|
....*
gi 24580545 548 LILLS 552
Cdd:COG0842 126 LTFLS 130
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
82-103 |
6.97e-03 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 35.27 E-value: 6.97e-03
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
193-273 |
8.15e-03 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 39.39 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24580545 193 KLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICsIHTPSAKIFEMLDAVYVLAEGQC 272
Cdd:NF040905 404 NLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIV-ISSELPELLGMCDRIYVMNEGRI 482
|
.
gi 24580545 273 V 273
Cdd:NF040905 483 T 483
|
|
| |
