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Conserved domains on  [gi|22327068|ref|NP_680222|]
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RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana]

Protein Classification

eukaryotic translation initiation factor 3 subunit L( domain architecture ID 10563035)

eukaryotic translation initiation factor 3 subunit L (EIF3L) is a component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Paf67 pfam10255
RNA polymerase I-associated factor PAF67; RNA polymerase I is a multisubunit enzyme and its ...
 105-501 0e+00

RNA polymerase I-associated factor PAF67; RNA polymerase I is a multisubunit enzyme and its transcription competence is dependent on the presence of PAF67. This family of proteins is conserved from worms to humans.


:

Pssm-ID: 463028  Cd Length: 399  Bit Score: 558.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   105 QRIDSYDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQFRAKLKNKTEEEIALLRQHDKAWNVYGVLNFL 182
Cdd:pfam10255   1 DRFESWENYCDLFNYILNsdGPVNLELPNQWLWDIIDEFVYQFQSFCQYRSKLKNKTEEEIALLEENPQVWNVYSVLNVL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   183 QALVEKSCIIQILEHDKDGLEfTETDGYDFsGGSNVLKVLGYFSMVGLLRVHCLLGDYHTALKWLQPIDITQPGVYTSVI 262
Cdd:pfam10255  81 HSLIQKSKINEQLEAEKEGVD-PDEVAGEF-GSSPLYKMLGYFSLIGLLRVHVLLGDYYLALKVLENIDLNKKALYSKVP 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   263 GCHIATIYHYGFATLMLRRYVDAVREFNKILLYIFKTKQ-YHQKSPQYEQLLKKNEQMYALLALSLSLCPQtkLVDESVN 341
Cdd:pfam10255 159 ACHVTTYYYVGFAYLMLRRYKDAIRTFSSILLYIQRTKQlYQTRSYQYDQINKQNDQMYALLAICLALCPQ--RLDESIH 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   342 SQLRDKYGEKMMRMLRSDDEAFgiyDELFSYACPKFITPSAPPtFEEPLVNYNQDAYRLQLKMFLYEVKQQQLLSGVRTF 421
Cdd:pfam10255 237 SQLKEKYGEKLYKMQRGDLQAF---EELFLFACPKFISPVSPD-YEDPNANEAKEPTQRQLKVFLKEVKQQKLLPTLRSY 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   422 LKVYSSISLAKLANYMEVDEPTLRTILLTYKHKTHSVDS-------DGRIISNADIDFFINNDMIYVVESKPAKRYGDFF 494
Cdd:pfam10255 313 LKLYTTIPLEKLASFLDVDEEELRSQLLCFKHKMRQLVWteggsllDGEFQSTSDLDFYIDGDMIHIAETKVARRYGDYF 392


                  ....*..
gi 22327068   495 LRQIAKL 501
Cdd:pfam10255 393 IRQIAKF 399
 
Name Accession Description Interval E-value
Paf67 pfam10255
RNA polymerase I-associated factor PAF67; RNA polymerase I is a multisubunit enzyme and its ...
 105-501 0e+00

RNA polymerase I-associated factor PAF67; RNA polymerase I is a multisubunit enzyme and its transcription competence is dependent on the presence of PAF67. This family of proteins is conserved from worms to humans.


Pssm-ID: 463028  Cd Length: 399  Bit Score: 558.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   105 QRIDSYDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQFRAKLKNKTEEEIALLRQHDKAWNVYGVLNFL 182
Cdd:pfam10255   1 DRFESWENYCDLFNYILNsdGPVNLELPNQWLWDIIDEFVYQFQSFCQYRSKLKNKTEEEIALLEENPQVWNVYSVLNVL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   183 QALVEKSCIIQILEHDKDGLEfTETDGYDFsGGSNVLKVLGYFSMVGLLRVHCLLGDYHTALKWLQPIDITQPGVYTSVI 262
Cdd:pfam10255  81 HSLIQKSKINEQLEAEKEGVD-PDEVAGEF-GSSPLYKMLGYFSLIGLLRVHVLLGDYYLALKVLENIDLNKKALYSKVP 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   263 GCHIATIYHYGFATLMLRRYVDAVREFNKILLYIFKTKQ-YHQKSPQYEQLLKKNEQMYALLALSLSLCPQtkLVDESVN 341
Cdd:pfam10255 159 ACHVTTYYYVGFAYLMLRRYKDAIRTFSSILLYIQRTKQlYQTRSYQYDQINKQNDQMYALLAICLALCPQ--RLDESIH 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   342 SQLRDKYGEKMMRMLRSDDEAFgiyDELFSYACPKFITPSAPPtFEEPLVNYNQDAYRLQLKMFLYEVKQQQLLSGVRTF 421
Cdd:pfam10255 237 SQLKEKYGEKLYKMQRGDLQAF---EELFLFACPKFISPVSPD-YEDPNANEAKEPTQRQLKVFLKEVKQQKLLPTLRSY 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   422 LKVYSSISLAKLANYMEVDEPTLRTILLTYKHKTHSVDS-------DGRIISNADIDFFINNDMIYVVESKPAKRYGDFF 494
Cdd:pfam10255 313 LKLYTTIPLEKLASFLDVDEEELRSQLLCFKHKMRQLVWteggsllDGEFQSTSDLDFYIDGDMIHIAETKVARRYGDYF 392


                  ....*..
gi 22327068   495 LRQIAKL 501
Cdd:pfam10255 393 IRQIAKF 399
 
Name Accession Description Interval E-value
Paf67 pfam10255
RNA polymerase I-associated factor PAF67; RNA polymerase I is a multisubunit enzyme and its ...
 105-501 0e+00

RNA polymerase I-associated factor PAF67; RNA polymerase I is a multisubunit enzyme and its transcription competence is dependent on the presence of PAF67. This family of proteins is conserved from worms to humans.


Pssm-ID: 463028  Cd Length: 399  Bit Score: 558.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   105 QRIDSYDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQFRAKLKNKTEEEIALLRQHDKAWNVYGVLNFL 182
Cdd:pfam10255   1 DRFESWENYCDLFNYILNsdGPVNLELPNQWLWDIIDEFVYQFQSFCQYRSKLKNKTEEEIALLEENPQVWNVYSVLNVL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   183 QALVEKSCIIQILEHDKDGLEfTETDGYDFsGGSNVLKVLGYFSMVGLLRVHCLLGDYHTALKWLQPIDITQPGVYTSVI 262
Cdd:pfam10255  81 HSLIQKSKINEQLEAEKEGVD-PDEVAGEF-GSSPLYKMLGYFSLIGLLRVHVLLGDYYLALKVLENIDLNKKALYSKVP 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   263 GCHIATIYHYGFATLMLRRYVDAVREFNKILLYIFKTKQ-YHQKSPQYEQLLKKNEQMYALLALSLSLCPQtkLVDESVN 341
Cdd:pfam10255 159 ACHVTTYYYVGFAYLMLRRYKDAIRTFSSILLYIQRTKQlYQTRSYQYDQINKQNDQMYALLAICLALCPQ--RLDESIH 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   342 SQLRDKYGEKMMRMLRSDDEAFgiyDELFSYACPKFITPSAPPtFEEPLVNYNQDAYRLQLKMFLYEVKQQQLLSGVRTF 421
Cdd:pfam10255 237 SQLKEKYGEKLYKMQRGDLQAF---EELFLFACPKFISPVSPD-YEDPNANEAKEPTQRQLKVFLKEVKQQKLLPTLRSY 312

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22327068   422 LKVYSSISLAKLANYMEVDEPTLRTILLTYKHKTHSVDS-------DGRIISNADIDFFINNDMIYVVESKPAKRYGDFF 494
Cdd:pfam10255 313 LKLYTTIPLEKLASFLDVDEEELRSQLLCFKHKMRQLVWteggsllDGEFQSTSDLDFYIDGDMIHIAETKVARRYGDYF 392


                  ....*..
gi 22327068   495 LRQIAKL 501
Cdd:pfam10255 393 IRQIAKF 399
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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