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Conserved domains on  [gi|30682540|ref|NP_680156|]
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Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

Protein Classification

RCC1 domain-containing protein( domain architecture ID 11474102)

RCC1 (regulator of chromosome condensation) domain-containing protein similar to Arabidopsis UVR8 (UV RESISTANCE LOCUS 8), which plays an important role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway.

Gene Ontology:  GO:0003682|GO:0005085
PubMed:  9510255|18442486

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 51-406 8.58e-62

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 203.67  E-value: 8.58e-62
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540  51 AAMWGSGDYGRLGLGNLDSQWTPAVCSALSDhsITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMdPLEVS 130
Cdd:COG5184  19 VWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTT-PVKVP 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 131 GLDkDILHISAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARvvRVPTKVeALHGITIQSVALGSEHSVAVTDGGEVL 210
Cdd:COG5184  96 GLT-GVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNR--LTPVQV-DAGLSGVVAIAAGGYHTCALKSDGTVW 171

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 211 SWGGGgsgrlghghQSSLFGILRSNSEFTPRLIKELEGikVTNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNAT 290
Cdd:COG5184 172 CWGAN---------SYGQLGDGTTTDRPTPVQVGGLSG--VVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRA 240

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 291 TPSIISEVPYAEEVACGGYHTCVVTRGGELYTWGSNENGCLGTDSTYVSHSPVRVEGpflESTVSQVSCGWKHTAAI-SD 369
Cdd:COG5184 241 TPVQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKVPG---LSGVVAVAAGSSHTCALlTD 317

                       330       340       350
                ....*....|....*....|....*....|....*..
gi 30682540 370 NNVFTWGWGGShgtfsvdghssgGQLGHGSDVDYARP 406
Cdd:COG5184 318 GTVWCWGDNAY------------GQLGDGTTTDRSTP 342
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 51-406 8.58e-62

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 203.67  E-value: 8.58e-62
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540  51 AAMWGSGDYGRLGLGNLDSQWTPAVCSALSDhsITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMdPLEVS 130
Cdd:COG5184  19 VWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTT-PVKVP 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 131 GLDkDILHISAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARvvRVPTKVeALHGITIQSVALGSEHSVAVTDGGEVL 210
Cdd:COG5184  96 GLT-GVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNR--LTPVQV-DAGLSGVVAIAAGGYHTCALKSDGTVW 171

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 211 SWGGGgsgrlghghQSSLFGILRSNSEFTPRLIKELEGikVTNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNAT 290
Cdd:COG5184 172 CWGAN---------SYGQLGDGTTTDRPTPVQVGGLSG--VVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRA 240

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 291 TPSIISEVPYAEEVACGGYHTCVVTRGGELYTWGSNENGCLGTDSTYVSHSPVRVEGpflESTVSQVSCGWKHTAAI-SD 369
Cdd:COG5184 241 TPVQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKVPG---LSGVVAVAAGSSHTCALlTD 317

                       330       340       350
                ....*....|....*....|....*....|....*..
gi 30682540 370 NNVFTWGWGGShgtfsvdghssgGQLGHGSDVDYARP 406
Cdd:COG5184 318 GTVWCWGDNAY------------GQLGDGTTTDRSTP 342
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
318-367 4.11e-12

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 60.61  E-value: 4.11e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 30682540   318 GELYTWGSNENGCLGTDSTYVSHSPVRVEGpFLESTVSQVSCGWKHTAAI 367
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTENVLVPQKVEG-LSGNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 51-406 8.58e-62

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 203.67  E-value: 8.58e-62
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540  51 AAMWGSGDYGRLGLGNLDSQWTPAVCSALSDhsITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMdPLEVS 130
Cdd:COG5184  19 VWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTTDRTT-PVKVP 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 131 GLDkDILHISAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARvvRVPTKVeALHGITIQSVALGSEHSVAVTDGGEVL 210
Cdd:COG5184  96 GLT-GVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNR--LTPVQV-DAGLSGVVAIAAGGYHTCALKSDGTVW 171

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 211 SWGGGgsgrlghghQSSLFGILRSNSEFTPRLIKELEGikVTNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNAT 290
Cdd:COG5184 172 CWGAN---------SYGQLGDGTTTDRPTPVQVGGLSG--VVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRA 240

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 291 TPSIISEVPYAEEVACGGYHTCVVTRGGELYTWGSNENGCLGTDSTYVSHSPVRVEGpflESTVSQVSCGWKHTAAI-SD 369
Cdd:COG5184 241 TPVQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKVPG---LSGVVAVAAGSSHTCALlTD 317

                       330       340       350
                ....*....|....*....|....*....|....*..
gi 30682540 370 NNVFTWGWGGShgtfsvdghssgGQLGHGSDVDYARP 406
Cdd:COG5184 318 GTVWCWGDNAY------------GQLGDGTTTDRSTP 342
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 85-432 1.27e-60

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 200.59  E-value: 1.27e-60
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540  85 TAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMdPLEVSGLDkDILHISAGYYHSAAITVDGELYMWGKNSSG 164
Cdd:COG5184   1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRST-PVRVPGLS-NVVAVAAGGDHTCALKADGTVWCWGNNSYG 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 165 QLGLGKKAARvvRVPTKVEALHGITiqSVALGSEHSVAVTDGGEVLSWGGGGsgrlghghqSSLFGILRSNSEFTPRLIk 244
Cdd:COG5184  79 QLGDGTTTDR--TTPVKVPGLTGVV--AVAAGYYHSCALKSDGTVWCWGDNS---------SGQLGDGTTTNRLTPVQV- 144

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 245 ELEGIKVTNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNATTPSIISEVPYAEEVACGGYHTCVVTRGGELYTWG 324
Cdd:COG5184 145 DAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGVVAVAAGGDHSCALKSDGTVWCWG 224

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 325 SNENGCLGTDSTYVSHSPVRVEGPfleSTVSQVSCGWKHTAAI-SDNNVFTWGWGGShgtfsvdghssgGQLGHGSDVDY 403
Cdd:COG5184 225 SNSSGQLGDGTTTDRATPVQVAGL---TGVVAIAAGGSHTCALkSDGTVWCWGDNSY------------GQLGDGTTTDR 289

                       330       340
                ....*....|....*....|....*....
gi 30682540 404 ARPAMVDLGKNVraVHISCGFNHTAAVLE 432
Cdd:COG5184 290 STPVKVPGLSGV--VAVAAGSSHTCALLT 316
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 53-343 3.45e-49

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 170.54  E-value: 3.45e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540  53 MWGSGDYGRLGLGNLDSQWTPAVCSALSDhsITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMdPLEVSGL 132
Cdd:COG5184  71 CWGNNSYGQLGDGTTTDRTTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLT-PVQVDAG 147

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 133 DKDILHISAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVrvPTKVEALHGITiqSVALGSEHSVAVTDGGEVLSW 212
Cdd:COG5184 148 LSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPT--PVQVGGLSGVV--AVAAGGDHSCALKSDGTVWCW 223

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30682540 213 GGGgsgrlghghQSSLFGILRSNSEFTPRLIKELEGikVTNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNATTP 292
Cdd:COG5184 224 GSN---------SSGQLGDGTTTDRATPVQVAGLTG--VVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTP 292

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|.
gi 30682540 293 SIISEVPYAEEVACGGYHTCVVTRGGELYTWGSNENGCLGTDSTYVSHSPV 343
Cdd:COG5184 293 VKVPGLSGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
318-367 4.11e-12

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 60.61  E-value: 4.11e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 30682540   318 GELYTWGSNENGCLGTDSTYVSHSPVRVEGpFLESTVSQVSCGWKHTAAI 367
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTENVLVPQKVEG-LSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
152-203 2.71e-11

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 58.30  E-value: 2.71e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 30682540   152 DGELYMWGKNSSGQLGLGKKAARvvRVPTKVEALHGITIQSVALGSEHSVAV 203
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENV--LVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
54-97 9.09e-10

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 54.06  E-value: 9.09e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 30682540    54 WGSGDYGRLGLGNLDSQWTPAVCSALSDHSITAVACGGAHTLFL 97
Cdd:pfam00415   7 WGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
369-430 3.37e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 49.44  E-value: 3.37e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30682540   369 DNNVFTWGWGgshgtfsvdghsSGGQLGHGSDVDYARPAMVDLGKNVRAVHISCGFNHTAAV 430
Cdd:pfam00415   1 DGRVYTWGRN------------DYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
136-165 1.27e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 47.42  E-value: 1.27e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 30682540   136 ILHISAGYYHSAAITVDGELYMWGKNSSGQ 165
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
304-330 4.40e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 45.88  E-value: 4.40e-07
                          10        20
                  ....*....|....*....|....*..
gi 30682540   304 VACGGYHTCVVTRGGELYTWGSNENGC 330
Cdd:pfam13540   4 VAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
84-113 1.43e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 44.34  E-value: 1.43e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 30682540    84 ITAVACGGAHTLFLTETRRVFATGLNDCGQ 113
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
102-149 8.40e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 37.11  E-value: 8.40e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 30682540   102 RVFATGLNDCGQLGVSDVKSHaMDPLEVSGL-DKDILHISAGYYHSAAI 149
Cdd:pfam00415   3 RVYTWGRNDYGQLGLGTTENV-LVPQKVEGLsGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
354-377 2.83e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 35.09  E-value: 2.83e-03
                          10        20
                  ....*....|....*....|....*
gi 30682540   354 VSQVSCGWKHTAAI-SDNNVFTWGW 377
Cdd:pfam13540   1 VVSVAAGDNHTLALtSDGRVYCWGD 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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