NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|22325571|ref|NP_671807|]
View 

NADH-Ubiquinone/plastoquinone (complex I) protein [Arabidopsis thaliana]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-190 2.41e-72

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member TIGR01770:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 468  Bit Score: 226.75  E-value: 2.41e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571     1 MWAPDIYEGSPTPVTAFLSIAPKISISANILRVSIYGSYG--ATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIG 78
Cdd:TIGR01770 224 MWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILFGfsEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSIS 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    79 HVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQTR---VKYIADLGALAKTNPISAITFSITMFSYAGIP 155
Cdd:TIGR01770 304 HVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKdewIEYISDFAGLFKTNPILAILILIFMFSLAGIP 383

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 22325571   156 PLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGR 190
Cdd:TIGR01770 384 PLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418
 
Name Accession Description Interval E-value
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-190 2.41e-72

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 226.75  E-value: 2.41e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571     1 MWAPDIYEGSPTPVTAFLSIAPKISISANILRVSIYGSYG--ATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIG 78
Cdd:TIGR01770 224 MWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILFGfsEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSIS 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    79 HVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQTR---VKYIADLGALAKTNPISAITFSITMFSYAGIP 155
Cdd:TIGR01770 304 HVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKdewIEYISDFAGLFKTNPILAILILIFMFSLAGIP 383

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 22325571   156 PLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGR 190
Cdd:TIGR01770 384 PLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-189 1.95e-59

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 193.41  E-value: 1.95e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   1 MWAPDIYEGSPTPVTAFLSIAPKISISANILRVSIYG--SYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIG 78
Cdd:COG1007 224 MWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAfpGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIA 303

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571  79 HVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQ--TRVKYIADLGALAKTNPISAITFSITMFSYAGIPP 156
Cdd:COG1007 304 HAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFAVILLLSRkgGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPP 383

                       170       180       190
                ....*....|....*....|....*....|...
gi 22325571 157 LAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 189
Cdd:COG1007 384 TAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVIS 416
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-186 2.29e-58

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 185.59  E-value: 2.29e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571     1 MWAPDIYEGSPTPVTAFL-SIAPKISISANILRVSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGH 79
Cdd:pfam00361 103 TWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISH 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    80 VGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSA--LRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPL 157
Cdd:pfam00361 183 MGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSviYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPT 262

                         170       180
                  ....*....|....*....|....*....
gi 22325571   158 AGFCSKFYLFFAALGCGAYFLAPVGVVTS 186
Cdd:pfam00361 263 AGFLGKFLILAAAVAASWIFLVLAGVVGS 291
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-189 3.35e-58

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 190.03  E-value: 3.35e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGSPTPVTAFLSIAPKISISANILRVSIYG--SYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIG 78
Cdd:PRK05777 225 MWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAfgGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIA 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   79 HVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQ--TRVKYIADLGALAKTNPISAITFSITMFSYAGIPP 156
Cdd:PRK05777 305 HAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLLRRkgGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPP 384

                        170       180       190
                 ....*....|....*....|....*....|...
gi 22325571  157 LAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 189
Cdd:PRK05777 385 TAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIG 417
 
Name Accession Description Interval E-value
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-190 2.41e-72

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 226.75  E-value: 2.41e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571     1 MWAPDIYEGSPTPVTAFLSIAPKISISANILRVSIYGSYG--ATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIG 78
Cdd:TIGR01770 224 MWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYILFGfsEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSIS 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    79 HVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQTR---VKYIADLGALAKTNPISAITFSITMFSYAGIP 155
Cdd:TIGR01770 304 HVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKdewIEYISDFAGLFKTNPILAILILIFMFSLAGIP 383

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 22325571   156 PLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGR 190
Cdd:TIGR01770 384 PLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-189 1.95e-59

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 193.41  E-value: 1.95e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   1 MWAPDIYEGSPTPVTAFLSIAPKISISANILRVSIYG--SYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIG 78
Cdd:COG1007 224 MWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAfpGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIA 303

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571  79 HVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQ--TRVKYIADLGALAKTNPISAITFSITMFSYAGIPP 156
Cdd:COG1007 304 HAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFAVILLLSRkgGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPP 383

                       170       180       190
                ....*....|....*....|....*....|...
gi 22325571 157 LAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 189
Cdd:COG1007 384 TAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVIS 416
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-186 2.29e-58

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 185.59  E-value: 2.29e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571     1 MWAPDIYEGSPTPVTAFL-SIAPKISISANILRVSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGH 79
Cdd:pfam00361 103 TWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISH 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    80 VGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSA--LRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPL 157
Cdd:pfam00361 183 MGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSviYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPT 262

                         170       180
                  ....*....|....*....|....*....
gi 22325571   158 AGFCSKFYLFFAALGCGAYFLAPVGVVTS 186
Cdd:pfam00361 263 AGFLGKFLILAAAVAASWIFLVLAGVVGS 291
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-189 3.35e-58

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 190.03  E-value: 3.35e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGSPTPVTAFLSIAPKISISANILRVSIYG--SYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIG 78
Cdd:PRK05777 225 MWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAfgGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIA 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   79 HVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQ--TRVKYIADLGALAKTNPISAITFSITMFSYAGIPP 156
Cdd:PRK05777 305 HAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLLRRkgGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPP 384

                        170       180       190
                 ....*....|....*....|....*....|...
gi 22325571  157 LAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 189
Cdd:PRK05777 385 TAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIG 417
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
2-188 3.71e-42

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 148.66  E-value: 3.71e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLSIAPKISISANILR--VSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGH 79
Cdd:PRK02504 232 WTPDVYEGSPTPVVAFLSVGSKAAGFALAIRllVTAFPSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQ 311

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   80 VGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFA--IVSALRqTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPL 157
Cdd:PRK02504 312 AGFVMIGLVAGTEAGYASMVFYLLAYLFMNLGAFAcvILFSLR-TGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPL 390

                        170       180       190
                 ....*....|....*....|....*....|.
gi 22325571  158 AGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 188
Cdd:PRK02504 391 AGFFGKIYLFWAGWQAGLYLLVLVGLVTSVI 421
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-189 1.28e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 144.40  E-value: 1.28e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGSPTPVTAFLSIAPKISIsanilrVSIYGSYGATLQqIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHV 80
Cdd:MTH00196 116 MWAPDVYEGAPTKTTALLAIVPKLGI------FSILVSIGLNVN-ILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHM 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   81 GYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQTRvKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGF 160
Cdd:MTH00196 189 GFVLWGIEIGSFESIQASLVYLFIYIIMSICVFSIILALNVYK-NLIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGF 267

                        170       180
                 ....*....|....*....|....*....
gi 22325571  161 CSKFYLFFAALGCGAYFLAPVGVVTSVIG 189
Cdd:MTH00196 268 LGKWLILLSGVVYQYYLIFLLAVFCSVIA 296
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-188 1.81e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 145.93  E-value: 1.81e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGSPTPVTAFLSIAPKISISANILRVsiygsygATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHV 80
Cdd:MTH00199 211 MWAPDVYEGAPTITTALLATVPKIGVFSILVQI-------GPVTNVVLICAVLSIIYGAIGALNQTKIKRLLAYSGIGHM 283

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   81 GYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQTRvKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGF 160
Cdd:MTH00199 284 GFILFGVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTK-GLIVEVSGLSRKNPVIALTLALTFLSIAGIPPLAGF 362

                        170       180
                 ....*....|....*....|....*...
gi 22325571  161 CSKFYLFFAALGCGAYFLAPVGVVTSVI 188
Cdd:MTH00199 363 LSKWLILLSGVSSGYYLICIIAVLSSVI 390
ndhB CHL00049
NADH dehydrogenase subunit 2
 2-188 2.31e-39

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 140.91  E-value: 2.31e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLSIAPKISISANILRVS--IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGH 79
Cdd:CHL00049 236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIFdiPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   80 VGYIRTGFSCGTIE-GIQSLLIGIFIYALMTMDAFA--IVSALRqTRVKYIADLGALAKTNPISAITFSITMFSYAGIPP 156
Cdd:CHL00049 316 IGYVIIGIIVGDSNdGYASMITYMLFYIFMNLGTFAciVLFGLR-TGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPP 394

                        170       180       190
                 ....*....|....*....|....*....|..
gi 22325571  157 LAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 188
Cdd:CHL00049 395 LAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVI 426
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-188 5.36e-29

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 111.78  E-value: 5.36e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   1 MWAPDIYEGSPTPVTAFLS-IAPKISISAnILRVSIY---GSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSS 76
Cdd:COG0651 226 FWLPDAYPAAPSPVSALLSgLLTKVGVYA-ILRVLTLlfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSS 304

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571  77 IGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSAL-RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIP 155
Cdd:COG0651 305 VSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIeRATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLP 384

                       170       180       190
                ....*....|....*....|....*....|...
gi 22325571 156 PLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 188
Cdd:COG0651 385 PLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLL 417
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 1-171 2.99e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 105.33  E-value: 2.99e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGSPTPVTAFLSIAPKISisANILRVSIygsygATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHV 80
Cdd:MTH00198 320 MWTPDVYEGAPTPTTALIAIIPKFT--VYILLTSL-----VITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHI 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   81 GYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQ------------------TRVKYIADLGALAKTNPISAI 142
Cdd:MTH00198 393 GFILIGVSAGTYESLQASWTYAVTYLVSALASFTVICTLEEfgtrtptsrqrdgsfgnyNLVRRLVDLTILSRGQPYIAF 472

                        170       180
                 ....*....|....*....|....*....
gi 22325571  143 TFSITMFSYAGIPPLAGFCSKFYLFFAAL 171
Cdd:MTH00198 473 SLAIVFLSLAGIPPLLGFLGKWFILVGSI 501
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-206 3.80e-23

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 96.19  E-value: 3.80e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLS-IAPKISISAnILRV--------SIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPL 72
Cdd:PRK12667 245 WLPDAHPAAPSPVSAMLSgLVVNVGAYA-IIRFlytifgisPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLL 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   73 AHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSAL-RQTRVKYIADLGALAKTNPISAITFSITMFSY 151
Cdd:PRK12667 324 AYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFiHAAGTRDIDELAGLGRKMPIASFAFLIGALSL 403

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 22325571  152 AGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRISKFGGPK 206
Cdd:PRK12667 404 VGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPK 458
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-212 5.03e-20

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 87.24  E-value: 5.03e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGSPTPVTAFLS-IAPKISISAnILRVSIYG-----SYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAH 74
Cdd:PRK08375 223 TWLPRAYPAAPPVVTALLSgLVTKVAVYA-LIRIYFTVfggdfRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAY 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   75 SSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQTR-VKYIADLGALAKTNPISAITFSITMFSYAG 153
Cdd:PRK08375 302 STVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYgTRRLSELSGLGRRMPLTAAAFAVASLSLIG 381

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 22325571  154 IPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRISKFGGPKAVLRAP 212
Cdd:PRK08375 382 VPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAP 440
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
1-203 9.00e-20

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 86.54  E-value: 9.00e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGSPTPVTA-FLSIAPKISISANI-LRVSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIG 78
Cdd:PRK12663 227 MWLPAAYHTPNTEVAAlFAALLTKVGIYALIrVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVIS 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   79 HVGYIRTGFSCGTIEGIQ-SLLIGIFIYALMTMDAFAIVSALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPL 157
Cdd:PRK12663 307 SIGFILLGLALGTPAGINgAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPF 386

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 22325571  158 AGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRISKFG 203
Cdd:PRK12663 387 SGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLAYWG 432
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 2-188 1.37e-19

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 85.90  E-value: 1.37e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   2 WAPDIYEGSPTPVTAFLS-IAPKISISAnILRVSIY----GSygATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSS 76
Cdd:COG1008 231 WLPDAHVEAPTAGSVLLAgVLLKMGGYG-LLRFALPlfpeAS--AYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSS 307

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571  77 IGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSAL-RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIP 155
Cdd:COG1008 308 VSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLyDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLP 387

                       170       180       190
                ....*....|....*....|....*....|...
gi 22325571 156 PLAGFCSKFYLFFAALgcGAYFLAPVGVVTSVI 188
Cdd:COG1008 388 GTSGFVGEFLVLLGAF--QVNPWLAILAALGLI 418
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-186 2.40e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 85.41  E-value: 2.40e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTA-FLSIAPKISISAnILRVSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHV 80
Cdd:PRK12665 231 WLPDSYPTAPAPVTAvFAGLLTKVGVYA-IIRTHTLLFPGGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHI 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   81 GYIRTGFSCGTIEGiqslLIGIFIYA---LMTMDAFAIVSAL--RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIP 155
Cdd:PRK12665 310 GYMVFGIALSTVAG----LSGAIYYVahhITVQTTLFLVVGLieRQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIP 385

                        170       180       190
                 ....*....|....*....|....*....|....
gi 22325571  156 PLAGFCSKFYLFFAALGCG---AYFLAPVGVVTS 186
Cdd:PRK12665 386 PFSGFIGKVALLEAGAEDGtwlAWALVAGGVVTS 419
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 2-188 1.12e-16

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 76.89  E-value: 1.12e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLSIAPKISisANILRVSIYGSygaTLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHVG 81
Cdd:MTH00041 114 WFPDVLQGLPFLQGLIIATWQKIA--PLILLISISNL---LNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLG 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   82 YIrtgfscgTIEGIQSLLIGI---FIYALMTMDAFAIVSALRqtrVKYIADLGALAKTNPISAITFSITMFSYAGIPPLA 158
Cdd:MTH00041 189 WI-------IITSAYSPNASIimfLIYIIINTSIFLIGNNFS---LSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLT 258

                        170       180       190
                 ....*....|....*....|....*....|
gi 22325571  159 GFCSKFYLFFAALGCGAYFLAPVGVVTSVI 188
Cdd:MTH00041 259 GFLNKFISLYCLIQNNSILISIILIIGSLL 288
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-189 3.37e-16

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 76.57  E-value: 3.37e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLSIAPK-------ISISANILRVSIYGSYGA-----TLQQIFFFCSIASMILGALAAMAQTKVK 69
Cdd:PRK08668 218 WAPDAYSEAPQSFSAVLSGQLSklgaygfLLVLYVLPGTKLFSEFGTyrgvpLFNYILAWLGNISIIVGTLMAILQEDIK 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   70 RPLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSAL-RQTRVKYIADLGALAKTNPISAITFSITM 148
Cdd:PRK08668 298 KLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAViYRTGTTKISEMGGLIEKMPFTFAMYLVAI 377

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 22325571  149 FSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 189
Cdd:PRK08668 378 ISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGS 418
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 2-210 5.36e-16

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 75.57  E-value: 5.36e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVT----AFLSIAPKISISANILRVSIYGSYGATLQQIFFFCSIaSMILGALAAMAQTKVKRPLAHSSI 77
Cdd:PRK08377 228 WAPDAYQAAPHPITvmfsAFVVKAGLYAMARILYLMQNANGWSSVLKLVIIMATL-TVFFAELSALRQKNVKRMIAYSSI 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   78 GHVGYIRTGFSCGTIEGIQSlligifiyALMTMDAFAIVSALRQTRVKY---------IADLGALAKTNPISAITFSITM 148
Cdd:PRK08377 307 GQVGMIALALALGTQAGVDA--------GVFHMINHAIVKALLFLAVGYvgitlggteIEKFEGLGKRMPLTALALTIGA 378

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22325571  149 FSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRISKFGGPKAVLR 210
Cdd:PRK08377 379 LSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRLIHTMWFKGEGERIR 440
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-167 2.30e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 73.98  E-value: 2.30e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGSPTPVTAFLSIAPKISISAnILRV--SIYGSY--GATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSS 76
Cdd:PRK08376 241 MWLPDAYPAAPSSISAMLLVIKQAGLYA-LARVlfSIYGPAinLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHS 319

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   77 IGHVGYIRTGFSCGTIE---------GIQSLLIGIF---IYALMTMDAFAIVSAL-RQTRVKYIADLGALAKTNPISAIT 143
Cdd:PRK08376 320 VSQIGYMLLGLGVGLAAlgdpamasyGEIALAGGIYhivNHALYKALLFLTAGAViYETGTRNLNELGGLARTMPKTTIA 399

                        170       180
                 ....*....|....*....|....
gi 22325571  144 FSITMFSYAGIPPLAGFCSKFYLF 167
Cdd:PRK08376 400 FLIGAAAIVGLPPFNGFASKWLIY 423
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-188 4.71e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 67.28  E-value: 4.71e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFL-SIAPKISISAnILRVS--IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIG 78
Cdd:PRK07691 231 WLPGSYYAPPIAIAALFgALLTKVGVYA-IARTFtlFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMI 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   79 HVGYIRTGFSCGTIEGIQslliGIFIYALMTMDA----FAIVSALRQ-TRVKYIADLGALAKTNPISAITFSITMFSYAG 153
Cdd:PRK07691 310 AVGVILVGVAMMTESGMI----GAIYYLIHDMIVkaalFLLIGIMIKiTGTTDLKKMGGLIKRYPVLGWMFFIAALSLAG 385

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 22325571  154 IPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 188
Cdd:PRK07691 386 IPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLL 420
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 2-163 1.60e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 65.23  E-value: 1.60e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLS----IAPkISIsanilrvsIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSI 77
Cdd:MTH00112 114 WLPEVLQGSTTTTALILStwqkLAP-LTL--------LLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSI 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   78 GHVGYIRTgfscgTIEGIQSL-LIGIFIYALMTMDAFaivSALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPP 156
Cdd:MTH00112 185 AHLGWMIA-----IITYSPKLtLLTFYIYILMTTPMF---LTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPP 256


                 ....*..
gi 22325571  157 LAGFCSK 163
Cdd:MTH00112 257 LTGFMPK 263
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 38-188 2.66e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 64.52  E-value: 2.66e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   38 SYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHvgyirTGFSC-GTIEGIQSLLIGIFIYALMTMDAFAIv 116
Cdd:MTH00144 138 LDLYWLAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISH-----TGWMLvAILHGSWLMWMYFLIYIVSSGFLFFS- 211

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22325571  117 saLRQTRVKYIADLGALAKTNPISAITFSItMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 188
Cdd:MTH00144 212 --LWSGDSGSMKDLGSLKPSYKTGLSIISL-LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLI 280
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 53-188 7.86e-12

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 63.63  E-value: 7.86e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571  53 ASMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFscgtieGIQSLLIGIF------IY-ALMTMDAFAIVSALrQTRvk 125
Cdd:COG1009 284 ITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL------GVGAYVAALFhllthaFFkALLFLGAGSVIHAT-GTR-- 354

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22325571 126 YIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAAL--GCGAYFLAPVGVVTSVI 188
Cdd:COG1009 355 DIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALeaGGLGPLLLAVALLGAFL 419
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
5-187 9.21e-12

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 63.51  E-value: 9.21e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    5 DIYEGSPTPVTAFLSIAPKISISA---NILRVSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHVG 81
Cdd:PRK06277 224 DIYAKAKPFGSALLQTFSKFVLVAlmlVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGG 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   82 YIRTGFSCGTIEGIQSlliGIF------IYALMTMDAFAIVSalRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIP 155
Cdd:PRK06277 304 YVAAGLALGTPLGIVA---GIFhainhvIYKSALFLGAGIVS--YRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVP 378

                        170       180       190
                 ....*....|....*....|....*....|..
gi 22325571  156 PLAGFCSKFYLFFAALGCGAYFLAPVGVVTSV 187
Cdd:PRK06277 379 PFNGFQSKLMLAQAAMQANMPELAIIMIIVSI 410
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 51-188 5.82e-11

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 60.99  E-value: 5.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   51 SIASMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSAL-RQTRVKYIAD 129
Cdd:PRK05846 284 GVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLyDRLHTRDIAD 363

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 22325571  130 LGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALgcGAYFLAPVGVVTSVI 188
Cdd:PRK05846 364 YGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSF--QVNPVIAFIATTGLI 420
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 1-170 1.75e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 59.60  E-value: 1.75e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGsPTPVTAFLSIAPKISISANIL-RVSIYGsyGATLQQIFFFCSI---ASMILGALAAMAQTKVKRPLAHSS 76
Cdd:PRK06525 228 SWLPDAMEA-PTPASAYLHAASMVKVGVYIFaRAIQSM--GPIPHVIGYVGAVmaiVTLLYGFLMYLPQQDMKRLLAYST 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   77 IGHVGYIRTGFSC---GTIEGIQSLLIGIFIYALMTMDAFAIVSALR-QTRVKYIADLGALAKTNPISAITFSITMFSYA 152
Cdd:PRK06525 305 ITQLGYMFFGLSLailGSRLALEGSIAYIFNHAFAKSLFFLVAGALSySCGTRLLPRLRGVLKKLPLVGVGFCVAALAIT 384

                        170
                 ....*....|....*...
gi 22325571  153 GIPPLAGFCSKFYLFFAA 170
Cdd:PRK06525 385 GVPPFNGFFSKFPIFAAG 402
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 2-166 4.48e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 58.06  E-value: 4.48e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLSIAPKISisaniLRVSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHVG 81
Cdd:MTH00200 114 WVPDVLQGLSLQTGLILSTWQKLA-----PFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLG 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   82 YIRTGFSCGTIEGIQSLLigifIYALMTmdaFAIVSALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFC 161
Cdd:MTH00200 189 WLLSGLVYSPNLALLYLL----LYVIIT---LTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFF 261


                 ....*
gi 22325571  162 SKFYL 166
Cdd:MTH00200 262 PKWLI 266
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 2-184 4.80e-10

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 58.40  E-value: 4.80e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLSiapkisisANILRVSIY----------GSYGA-TLQQIFFFCSIASMILGALAAMAQTKVKR 70
Cdd:PRK06458 236 WLPDAHSEAPSPVSALLS--------GVLLNVALYavlryyilidAAIGSdFPGRLLLIFGLLSVLVAAFFLLRQRDIKR 307

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   71 PLAHSSIGHVGYIRTGFSCGTIEGIQSLLIgifiyaLMTMDA-------FAIVSALRQTRVKYIADLGALAKTNPISAIT 143
Cdd:PRK06458 308 LFAYSSIEHMGLIAFALGIGGPLGIFAALL------HMLNHSltksaifFASGNVLQKYGTRDINVIRGLLKVSPLTGWG 381

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 22325571  144 FSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVV 184
Cdd:PRK06458 382 LMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAILLLL 422
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
2-163 6.09e-10

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 58.11  E-value: 6.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGsPTPVTAFLSIApkISISANILRVS----IYGSYGATLQQIFFFCSIASMiLGALAAMAQTKVKRPLAHSSI 77
Cdd:PRK07376 249 WLPDAMEG-PTPISALIHAA--TMVAAGVFLVArmypVFEQFPAVMTVIAWTGAITAF-LGASIALTQNDIKKGLAYSTI 324

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   78 GHVGYIRTGFSCGT-IEGIQSLLIGIFIYALMTMDAFAIVSALRQTrVKYIADL-------GALAKTNPISAITFSITMF 149
Cdd:PRK07376 325 SQLGYMVMAMGCGAySAGLFHLMTHAYFKAMLFLGSGSVIHGMEEV-VGHDPVLaqdmrlmGGLRKYMPITAITFLIGCL 403

                        170
                 ....*....|....
gi 22325571  150 SYAGIPPLAGFCSK 163
Cdd:PRK07376 404 AISGIPPFAGFWSK 417
PRK12650 PRK12650
DUF4040 family protein;
12-172 1.11e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 57.36  E-value: 1.11e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   12 TPVTAFLSIAPkiSISANI---LRVSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFS 88
Cdd:PRK12650 239 TPVSAFLHAAA--VVKAGIyllLRFSPVFHDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIG 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   89 CGTIEGIQSLLIGIFIYALMTMDAFAIVSAL-RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLF 167
Cdd:PRK12650 317 VGTPFALTAAVVHTLAHALFKSSLFMLIGVVdHQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGML 396


                 ....*
gi 22325571  168 FAALG 172
Cdd:PRK12650 397 TAFLE 401
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-191 6.47e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 55.13  E-value: 6.47e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLS-IAPKISISAnILRVsIYGSYGATL-------QQIFFFCSIASMILGALAAMAQTKVKRPLA 73
Cdd:PRK12662 231 WLIQAYSEAPSFISVFFSgTSTKVMIYL-IIRI-VYDVFKANFvfttlpfNNVFMILAALAIVFGSVLAILSKDIKRIFA 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   74 HSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALR-QTRVKYIADLGALAKTNPISAITFSITMFSYA 152
Cdd:PRK12662 309 YSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISyHFGTTKLEDCLNLWKSMPKITLAFVLLSLSLI 388

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 22325571  153 GIPPLAGFCSKFYLFFAALGCGAY---FLAPVGVVTSVIGRW 191
Cdd:PRK12662 389 GMPPTSGFVAKWYILDAFIKSNAWiglVVLLVGSGLSVIYVW 430
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-164 7.90e-09

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 54.44  E-value: 7.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGSPTPVTAFLS----IAPKISISANILrvsiygsygatlQQIFFFCSIASMILGALAAMAQTKVKRPLAHSS 76
Cdd:MTH00160 108 FWFPEVMEGLSWINCFILMtwqkIAPLILLSYLIN------------NNFIIIIIILSAIIGAIGGLNQTSLRKILAYSS 175

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   77 IGHVGYIRTGFSCgtieGIQSLLIGIFIYALMTmdaFAIVSALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPP 156
Cdd:MTH00160 176 INHLGWMLSSMMI----SENLWLIYFLIYSIIS---LSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPP 248


                 ....*...
gi 22325571  157 LAGFCSKF 164
Cdd:MTH00160 249 FLGFLPKW 256
PRK12646 PRK12646
DUF4040 family protein;
1-171 1.95e-08

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 53.61  E-value: 1.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEgSPTPVTAFLSIAPKISISANIL-RVSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGH 79
Cdd:PRK12646 231 IWLPRAMA-APTPVSAYLHSATMVKAGIFLLfRFTPLLGLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQ 309

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   80 VGYIRT--GFSCGTIEGIQSLLIGIFIYALMT-----MDAFAIVSAL--------RQTRVKYIADLGALAKTNPISAITF 144
Cdd:PRK12646 310 LGMIMAmvGIGGGYAQHQQDAIASIYVFVLFAalfhlMNHAIFKCALfmgvgiidHEAGTRDIRILSGMRQLFPKMNLVM 389

                        170       180
                 ....*....|....*....|....*..
gi 22325571  145 SITMFSYAGIPPLAGFCSKfYLFFAAL 171
Cdd:PRK12646 390 TIAALSMAGVPFLNGFLSK-EMFLDAL 415
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-188 3.47e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 52.90  E-value: 3.47e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   10 SPTPVTAFLSIAPKISISANILRVSIYGSYGATLQQIFF-------FCSIASMILGALAAMAQTKVKRPLAHSSIGHVGY 82
Cdd:PRK06589 239 AHYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFaefnwliFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSL 318

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   83 IRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSAL-RQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFC 161
Cdd:PRK06589 319 ALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIySLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFI 398

                        170       180       190
                 ....*....|....*....|....*....|.
gi 22325571  162 SKFYLFFAA----LGCGAYFLAPVGVVTSVI 188
Cdd:PRK06589 399 SKFLILLAAseqnQPWLSIIVMLVVIASSIL 429
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 46-188 5.03e-08

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 51.98  E-value: 5.03e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   46 IFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFscgtIEGIQSLLIGIFIYALMTmdaFAIVSALRQTRVK 125
Cdd:MTH00197 138 GLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSL----VYSPSIFMLYYLIYFVIM---FMLFLFLSKNNLS 210

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22325571  126 YIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 188
Cdd:MTH00197 211 SLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCF 273
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 52-188 6.00e-08

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 51.96  E-value: 6.00e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   52 IASMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIV-SALRQTRVKYIADL 130
Cdd:PRK12561 259 VVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTgVTYERTHTLSIPNM 338

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22325571  131 GALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAY---------FLAPVGVVTSVI 188
Cdd:PRK12561 339 GGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFLGITSSDVYsstfrtitiLLAAVGLILTPI 405
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 2-194 1.70e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 51.07  E-value: 1.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEgSPTPVTAFLSiapkisiSANILRVSIY------GSYGATL--QQIFFFCSIASMILGALAAMAQTKVKRPLA 73
Cdd:PRK12647 217 WLPNAME-APTPVSAYLH-------SATMVKAGIYllarlnPVLGGTPlwQTILPLFGGLTMLTGALLAVRQTDLKLILA 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   74 HSSIGHVGYIR--TGFscGTIEGIQSLLIGIFIYALMTMDAFAIVSAL-RQTRVKYIADLGALAKTNPISAITFSITMFS 150
Cdd:PRK12647 289 YSTVSALGTLVmlLGL--GSELAIKAAVLFLVAHSLYKGALFMVAGIIdHETGTRDITKLGGLRRAMPITAAAALLAALS 366

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 22325571  151 YAGIPPLAGFCSKFYLFFAALGCG--AYFLAPVGVVTSVIGRWAAG 194
Cdd:PRK12647 367 MAGLPPLFGFLAKELIYEALLEAPlwSLILTVAAVLGNALMVAVAF 412
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-163 2.94e-07

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 49.92  E-value: 2.94e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGSPTPVTAFLSIAPKISISANILRVSiygsygATL-QQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGH 79
Cdd:MTH00070 113 FWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIS------HLLnSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAH 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   80 VGYIRTGFSCGTiegiQSLLIGIFIYALMTMDAFAIVSALRQTRvkyIADLGALAKTNPISAITFSITMFSYAGIPPLAG 159
Cdd:MTH00070 187 LGWMIIILTFSP----HLTLLNLLIYLIMTSSMFLMLMNLNSTN---INKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTG 259


                 ....
gi 22325571  160 FCSK 163
Cdd:MTH00070 260 FIPK 263
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-175 4.90e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 49.44  E-value: 4.90e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEgSPTPVTAFLSIApkISISANILRVSIYGSYGATLQQIFFFCS---IASMILGALAAMAQTKVKRPLAHSSI 77
Cdd:PRK12649 235 IWLPNAME-APTPVSAFLHSA--TMVKAGVYLVARIHPIFSGTEAWFILVSgtgMITMVLAGFLAFRQTDIKAILAYSTI 311

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   78 GHVGYIRTGFSCGTIE----GIQSLLIGIFIYALMTMDAFAIVSAL-RQTRVKYIADLGALAKTNPISAITFSITMFSYA 152
Cdd:PRK12649 312 SQLAYLMTMYGYTTYHepglGVAAATFHLLNHATFKACLFLVAGIVaHEAATRDIRKLGGLRKEMPITFIVASIAALAMA 391

                        170       180
                 ....*....|....*....|...
gi 22325571  153 GIPPLAGFCSKFYLFFAALGCGA 175
Cdd:PRK12649 392 GIPPLNGFLSKEMFYETSVEMGA 414
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 52-163 6.13e-07

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 49.03  E-value: 6.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   52 IASMILGALAAMAQTKVKRPLAHSSIGHVGY--IRTGFScgtiegiQSL-LIGIFIYALMTMDAFAIVSALRQTRVKYIA 128
Cdd:MTH00135 158 LTSTLVGGWGGLNQTQLRKILAYSSIAHLGWmiLVLQFS-------PSLtLLALLTYIIMTSSAFLTFKLNSSTKINTLA 230

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 22325571  129 DlgALAKTNPISAITfSITMFSYAGIPPLAGFCSK 163
Cdd:MTH00135 231 T--SWTKAPALTALT-PLILLSLGGLPPLTGFMPK 262
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
54-167 1.86e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 47.78  E-value: 1.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   54 SMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAF---AIVSALRQTRvkyiaDL 130
Cdd:PRK07363 281 SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFhlvGIVERKVGTR-----DL 355

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 22325571  131 GAL-AKTNPI------SAITFSITMFSyAGIPPLAGFCSKFYLF 167
Cdd:PRK07363 356 DVLnGLMNPIrglpltSALLVLAGMAS-AGIPGLVGFVAEFIVF 398
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 2-181 2.92e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.06  E-value: 2.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLSiapkisisANILRVSIYG-----------SYGATLQQIFFFCSIASMILGALAAMAQTKVKR 70
Cdd:PRK08676 228 WLPAAYAKAPSVVSALLS--------GTVLNIGIYGilrlsallrqsGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKK 299

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   71 PLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSAL-RQTRVKYIADLGALAKTNPISAITFSITMF 149
Cdd:PRK08676 300 LIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILhRQYRSDRFDRIFDVFRLQPVAAWGVILGSA 379

                        170       180       190
                 ....*....|....*....|....*....|..
gi 22325571  150 SYAGIPPLAGFCSKFYLFFAALGCGAYFLAPV 181
Cdd:PRK08676 380 AIIGMPPFPLFLSKFFILLQLGGISVWLVLAV 411
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 2-169 9.04e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 45.88  E-value: 9.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLS-IAPKISISANILRVSIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHV 80
Cdd:PRK08667 227 WLPYAHPASPSNVSALMSgVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENI 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   81 GYIRTG---FSCGTIEGIQSL----LIGIFIYA--------LMTMDAFAIVSAlrqTRVKYIADLGALAKTNPISAITFS 145
Cdd:PRK08667 307 GIILMGiglYVIFGVYGLDTLallaLGGALFHSlnhalfksLLFLTAGSVVHA---TGTRNIEKMGGLVKLMPYTSALFL 383

                        170       180
                 ....*....|....*....|....
gi 22325571  146 ITMFSYAGIPPLAGFCSKFYLFFA 169
Cdd:PRK08667 384 VGAVSIAALPPFNGFASELLLYES 407
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-209 1.20e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 45.33  E-value: 1.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    1 MWAPDIYEGSPTPVTAFLSIAPKISISANILRVSIYGSYGATLQQIFffcSIASMILGALAAMAQTKVKRPLAHSSIGHV 80
Cdd:PRK07234 205 LWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIF---GVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   81 GYIRTGFSCGTIEGIQslligifiYALMTMDAFAIVSALRQTRVK-YIADLGALAKTNPISAITFSItmfsyAGIPPLAG 159
Cdd:PRK07234 282 GFILAAPLVGGLYALA--------HGLVKSTLFLCAGALPSRNFTeLISQMLGIGKWIPLTMASFSI-----AGFPLLAG 348

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 22325571  160 FCSKFYLFFAALGCGAYFLAPVGVVTsVIGRWAAGRLPRISKFGGPKAVL 209
Cdd:PRK07234 349 FVSKVLTLKNLLPWQAIALNLAAVGT-AASFWKFIFLPFSADDEDKKPLP 397
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 53-163 1.62e-05

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 44.77  E-value: 1.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   53 ASMILGALAAMAQTKVKRPLAHSSIGHVGYIrtgfSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQTRVKYiadLGA 132
Cdd:MTH00011 156 MSALAGGLGGMNQTQLRPLLAYSSIGHMGWM----TMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKF---NSK 228

                         90       100       110
                 ....*....|....*....|....*....|.
gi 22325571  133 LAKTNPISAITFSITMFSYAGIPPLAGFCSK 163
Cdd:MTH00011 229 ISSMSQTTSMSLFIMLLSLGGLPPFTGFMPK 259
ndhD CHL00011
NADH dehydrogenase subunit 4
 55-189 2.06e-05

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 44.55  E-value: 2.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   55 MILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIV-SALRQTRVKYIADLGAL 133
Cdd:CHL00011 288 IIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAgTSYDRIRLVYLDEMGGI 367

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 22325571  134 AKTNPISAITFSI-TMFSYAgIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 189
Cdd:CHL00011 368 AIPMPKIFTMFSSfSMASLA-LPGMSGFVAELIVFFGIITSQKYLLMPKILITFVMA 423
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 51-163 2.13e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 44.45  E-value: 2.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   51 SIASMILGALAAMAQTKVKRPLAHSSIGHVGY-IRTGFSCGTIegiqsLLIGIFIYALMTMDAFAIvsaLRQTRVKYIAD 129
Cdd:MTH00105 158 AILSILIGGWGGLNQTQLRKILAYSSIAHMGWmTAILPYNPTL-----TLLNLLIYIIMTLTMFML---LMLNSSTTTLS 229

                         90       100       110
                 ....*....|....*....|....*....|....
gi 22325571  130 LGALAKTNPISAITFSITMFSYAGIPPLAGFCSK 163
Cdd:MTH00105 230 LSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPK 263
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 28-160 2.89e-05

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 44.13  E-value: 2.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   28 ANILRVSIYGSYGA----TLQQIFFFCSIASMIL----------GALAAMAQTKVKRPLAHSSIGHVGYIrtgF-SCGTI 92
Cdd:PRK07390 254 ASILRNSVVVATGAwvliKLQPVLALSPVALTVLivigtvtaigASLVAIAQIDIKRALSYSTSAYLGLV---FiAVGLQ 330

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22325571   93 EGIQSLLIgIFIYAL-MTMDAFAIVSALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGF 160
Cdd:PRK07390 331 QPDIALLL-LLTHAIaKALLFMSVGSIILTTITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGF 398
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 2-205 4.78e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.41  E-value: 4.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGsPTPVTAFLSIAPKISISANILRVS--IYGSYGATLQQIFFFCSIASMiLGALAAMAQTKVKRPLAHSSIGH 79
Cdd:MTH00032 247 WLPDAMEG-PTPVSALIHAATMVTAGVFLMIRSfpLFEKAPLTLLIITIFGALTAF-FAATVGLVQNDLKKVIAYSTCSQ 324

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   80 VGYIR--TGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALrQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPL 157
Cdd:MTH00032 325 LGYMVliIGIEGSHNVGLFHLVNHAFFKALLFLSAGSVIHST-TVDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYL 403

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 22325571  158 AGFCSK---FYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRISKFGGP 205
Cdd:MTH00032 404 TGFYSKdliLELTYSGRNMGIPFGSSLLKIQGDIGIKKDDRGSIGGPEGYP 454
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 2-171 7.51e-05

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 42.99  E-value: 7.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEgSPTPVTAFLSiapkisiSANILRVSIYgsYGATLQQIFFFCS----------IASMILGALAAMAQTKVKRP 71
Cdd:PRK12645 232 WLPDAME-APTPVSAYLH-------SATMVKAGIY--LVARFTPIFAGSQvwfwtvtlvgLITLFWGSLNAVKQTDLKGI 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   72 LAHSSIGHVGYIRTGFSCGTI----EGIQSlligiFIYALMTMDA--------------FAIVSAL-RQTRVKYIADLGA 132
Cdd:PRK12645 302 LAFSTVSQLGLIMSLLGIGAAslhyQGDDS-----KIYAAAITAAifhlinhatfkgslFMIVGIVdHETGTRDIRKLGG 376

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 22325571  133 LAKTNPISAITFSITMFSYAGIPPLAGFCSKfYLFFAAL 171
Cdd:PRK12645 377 LMTIMPITFTIALIGALSMAGLPPFNGFLSK-EMFFESM 414
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 2-179 1.11e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 42.51  E-value: 1.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGSPTPVTAFLSiapkisisANILRVSIYGSYGATLQ--QIFFFCSIASMILG-------ALAAMAQTKVKRPL 72
Cdd:PRK08042 202 WVPQAHANASAPAAALFS--------TVVMKIGLLGILTLSLLggNAPLWWGVALLVLGmitafvgGLYALMEHNIQRLL 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   73 AHSSIGHVGYIRTGFSCGtIEGI---QSLLIGIF----IYALMTMDAFAIV------SALRQTRVKYIADLGALAKTNPI 139
Cdd:PRK08042 274 AYHTLENIGIILLGLGAG-VTGIaleQPALIALGlvggLYHLLNHSLFKSVlflgagSVWFRTGHRDIEKLGGIGKKMPV 352

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 22325571  140 SAITFSITMFSYAGIPPLAGFCSKF--YLFFAALGCGAYFLA 179
Cdd:PRK08042 353 ISIAMLVGLMAMAALPPLNGFAGEWviYQSFFKLSNSGAFVA 394
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 49-188 3.29e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 40.82  E-value: 3.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   49 FCSIASMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSAL---RQTR-V 124
Cdd:MTH00204 280 MLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLyerHHTRlI 359

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22325571  125 KYIAdlgALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAAL--GCGAYFLAPVGVVTSVI 188
Cdd:MTH00204 360 KYYR---GLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFeySLGLGVLVTSGMVWSAA 422
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
54-189 5.17e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.45  E-value: 5.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   54 SMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSALRQ---TR-VKYIAD 129
Cdd:PRK06473 281 SVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKktgSRdVDVLRG 360

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571  130 LGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFaalgcGAYFLAPVGVVTSVIG 189
Cdd:PRK06473 361 LLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFR-----GSFPIFPVQTLLCMIG 415
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 52-163 6.58e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 40.29  E-value: 6.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   52 IASMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSAL-RQTRVKYIADL 130
Cdd:PRK12644 275 LATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALFLVVGIIdHSTGTRDIRKL 354

                         90       100       110
                 ....*....|....*....|....*....|...
gi 22325571  131 GALAKTNPISAITFSITMFSYAGIPPLAGFCSK 163
Cdd:PRK12644 355 SGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
ndhF CHL00025
NADH dehydrogenase subunit 5
 2-163 1.49e-03

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 39.10  E-value: 1.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571    2 WAPDIYEGsPTPVTAFLS----IAPKISISANILRVSIygsygaTLQQIFFFCS---IASMILGALAAMAQTKVKRPLAH 74
Cdd:CHL00025 249 WLPDAMEG-PTPISALIHaatmVAAGIFLVARLLPLFI------VIPYIMNLISligIITALLGATLALAQKDIKRGLAY 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   75 SSIGHVGYIRTGFscgtieGIQSLLIGIF-----IY--ALMTMDAFAIVSALrQTRVKYIAD-------LGALAKTNPIS 140
Cdd:CHL00025 322 STMSQLGYMMLAL------GIGSYRAALFhlithAYskALLFLGSGSVIHSM-EPIVGYSPDksqnmvlMGGLRKYMPIT 394

                        170       180
                 ....*....|....*....|...
gi 22325571  141 AITFSITMFSYAGIPPLAGFCSK 163
Cdd:CHL00025 395 KTTFLLGTLSLCGIPPLACFWSK 417
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 131-184 1.56e-03

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 38.99  E-value: 1.56e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 22325571  131 GALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVV 184
Cdd:PRK06590 367 GGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAAFANGHINLFVAGLV 420
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 52-188 1.63e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 38.92  E-value: 1.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22325571   52 IASMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVSA-LRQTRVKYIADL 130
Cdd:PRK02546 287 VVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGAtYDRTHTLMLDEM 366

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22325571  131 GALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAY---------FLAPVGVVTSVI 188
Cdd:PRK02546 367 GGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFVGFATSDAYtlpfrvvvvFLAAVGVILTPI 433
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH