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Conserved domains on  [gi|189181674|ref|NP_666221|]
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alsin isoform 2 [Mus musculus]

Protein Classification

RCC1 domain-containing protein( domain architecture ID 1000464)

RCC1 (regulator of chromosome condensation) domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 18-219 7.18e-26

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 110.07  E-value: 7.18e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674  18 GLVHVW------QAGSFSLTPERLP---GWGGKTVLQAALGVRHGVLLTEDGEVYSFGTLPWKSESAEICPSSPLLESAL 88
Cdd:COG5184  117 GTVWCWgdnssgQLGDGTTTNRLTPvqvDAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVG 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674  89 VGHHVITVATGSFHSGAVTESGVVYMWGENAAGQCAVANQQYVPEPSPVsisdsetspSLAVRILQLACGEEHTLALSLS 168
Cdd:COG5184  197 GLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQV---------AGLTGVVAIAAGGSHTCALKSD 267

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 189181674 169 REIWAWG--TGCQLGLITTTfPVTKPQKVEHLAGrvVLQVACGAFHSLAL-----VQC 219
Cdd:COG5184  268 GTVWCWGdnSYGQLGDGTTT-DRSTPVKVPGLSG--VVAVAAGSSHTCALltdgtVWC 322
ATS1 super family cl34932
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 521-622 1.88e-17

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


The actual alignment was detected with superfamily member COG5184:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 84.64  E-value: 1.88e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674 521 EVWTWGKGKEGQLGHGDVLPRLQPlcVKCLDGKEVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSefpTTVPRLS-- 598
Cdd:COG5184  219 TVWCWGSNSSGQLGDGTTTDRATP--VQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDG---TTTDRSTpv 293

                         90       100
                 ....*....|....*....|....
gi 189181674 599 KVSSENGVWSVAAGQDYSLFLVDT 622
Cdd:COG5184  294 KVPGLSGVVAVAAGSSHTCALLTD 317
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 18-219 7.18e-26

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 110.07  E-value: 7.18e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674  18 GLVHVW------QAGSFSLTPERLP---GWGGKTVLQAALGVRHGVLLTEDGEVYSFGTLPWKSESAEICPSSPLLESAL 88
Cdd:COG5184  117 GTVWCWgdnssgQLGDGTTTNRLTPvqvDAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVG 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674  89 VGHHVITVATGSFHSGAVTESGVVYMWGENAAGQCAVANQQYVPEPSPVsisdsetspSLAVRILQLACGEEHTLALSLS 168
Cdd:COG5184  197 GLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQV---------AGLTGVVAIAAGGSHTCALKSD 267

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 189181674 169 REIWAWG--TGCQLGLITTTfPVTKPQKVEHLAGrvVLQVACGAFHSLAL-----VQC 219
Cdd:COG5184  268 GTVWCWGdnSYGQLGDGTTT-DRSTPVKVPGLSG--VVAVAAGSSHTCALltdgtVWC 322
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 521-622 1.88e-17

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 84.64  E-value: 1.88e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674 521 EVWTWGKGKEGQLGHGDVLPRLQPlcVKCLDGKEVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSefpTTVPRLS-- 598
Cdd:COG5184  219 TVWCWGSNSSGQLGDGTTTDRATP--VQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDG---TTTDRSTpv 293

                         90       100
                 ....*....|....*....|....
gi 189181674 599 KVSSENGVWSVAAGQDYSLFLVDT 622
Cdd:COG5184  294 KVPGLSGVVAVAAGSSHTCALLTD 317
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
521-568 9.38e-12

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 60.61  E-value: 9.38e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 189181674  521 EVWTWGKGKEGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGSHSLAL 568
Cdd:pfam00415   3 RVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
170-216 5.97e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 52.52  E-value: 5.97e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 189181674  170 EIWAWG--TGCQLGLiTTTFPVTKPQKVEHLAGRVVLQVACGAFHSLAL 216
Cdd:pfam00415   3 RVYTWGrnDYGQLGL-GTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 18-219 7.18e-26

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 110.07  E-value: 7.18e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674  18 GLVHVW------QAGSFSLTPERLP---GWGGKTVLQAALGVRHGVLLTEDGEVYSFGTLPWKSESAEICPSSPLLESAL 88
Cdd:COG5184  117 GTVWCWgdnssgQLGDGTTTNRLTPvqvDAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVG 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674  89 VGHHVITVATGSFHSGAVTESGVVYMWGENAAGQCAVANQQYVPEPSPVsisdsetspSLAVRILQLACGEEHTLALSLS 168
Cdd:COG5184  197 GLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQV---------AGLTGVVAIAAGGSHTCALKSD 267

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 189181674 169 REIWAWG--TGCQLGLITTTfPVTKPQKVEHLAGrvVLQVACGAFHSLAL-----VQC 219
Cdd:COG5184  268 GTVWCWGdnSYGQLGDGTTT-DRSTPVKVPGLSG--VVAVAAGSSHTCALltdgtVWC 322
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 15-216 7.06e-25

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 106.98  E-value: 7.06e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674  15 KERGLVHVW------QAG----SFSLTPERLPGwgGKTVLQAALGVRHGVLLTEDGEVY-----SFGTLPWKSESAEicp 79
Cdd:COG5184   14 KSDGTVWCWgdnsygQLGdgttTDRSTPVRVPG--LSNVVAVAAGGDHTCALKADGTVWcwgnnSYGQLGDGTTTDR--- 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674  80 SSPLLESALVGhhVITVATGSFHSGAVTESGVVYMWGENAAGQcaVANQQYVPEPSPVSISDSETSpslavrILQLACGE 159
Cdd:COG5184   89 TTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGDNSSGQ--LGDGTTTNRLTPVQVDAGLSG------VVAIAAGG 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 189181674 160 EHTLALSLSREIWAWG--TGCQLGLITTTfPVTKPQKVEHLAGrvVLQVACGAFHSLAL 216
Cdd:COG5184  159 YHTCALKSDGTVWCWGanSYGQLGDGTTT-DRPTPVQVGGLSG--VVAVAAGGDHSCAL 214
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 94-216 1.65e-19

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 91.19  E-value: 1.65e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674  94 ITVATGSFHSGAVTESGVVYMWGENAAGQcaVANQQYVPEPSPVSISDSETspslavrILQLACGEEHTLALSLSREIWA 173
Cdd:COG5184    1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQ--LGDGTTTDRSTPVRVPGLSN-------VVAVAAGGDHTCALKADGTVWC 71

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 189181674 174 WGTGC--QLGLITTTFPVTkPQKVEHLAGrvVLQVACGAFHSLAL 216
Cdd:COG5184   72 WGNNSygQLGDGTTTDRTT-PVKVPGLTG--VVAVAAGYYHSCAL 113
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 29-186 1.03e-17

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 85.80  E-value: 1.03e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674  29 SLTPERLPGWGGktVLQAALGVRHGVLLTEDGEVYSFGTlpwkSESAEICPSSPLLESALV----GHHVITVATGSFHSG 104
Cdd:COG5184  189 RPTPVQVGGLSG--VVAVAAGGDHSCALKSDGTVWCWGS----NSSGQLGDGTTTDRATPVqvagLTGVVAIAAGGSHTC 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674 105 AVTESGVVYMWGENAAGQCAVANQQYVPEPSPVsisdsetsPSLAvRILQLACGEEHTLALSLSREIWAWGTGC--QLGL 182
Cdd:COG5184  263 ALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKV--------PGLS-GVVAVAAGSSHTCALLTDGTVWCWGDNAygQLGD 333


                 ....
gi 189181674 183 ITTT 186
Cdd:COG5184  334 GTTT 337
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 521-622 1.88e-17

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 84.64  E-value: 1.88e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674 521 EVWTWGKGKEGQLGHGDVLPRLQPlcVKCLDGKEVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSefpTTVPRLS-- 598
Cdd:COG5184  219 TVWCWGSNSSGQLGDGTTTDRATP--VQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDG---TTTDRSTpv 293

                         90       100
                 ....*....|....*....|....
gi 189181674 599 KVSSENGVWSVAAGQDYSLFLVDT 622
Cdd:COG5184  294 KVPGLSGVVAVAAGSSHTCALLTD 317
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 522-622 2.61e-17

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 84.26  E-value: 2.61e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674 522 VWTWGKGKEGQLGHGDVLPRLQPLCVKCLDGkeVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSEF-----PTTVPR 596
Cdd:COG5184   19 VWCWGDNSYGQLGDGTTTDRSTPVRVPGLSN--VVAVAAGGDHTCALKADGTVWCWGNNSYGQLGDGTTtdrttPVKVPG 96

                         90       100
                 ....*....|....*....|....*.
gi 189181674 597 LSKVSsengvwSVAAGQDYSLFLVDT 622
Cdd:COG5184   97 LTGVV------AVAAGYYHSCALKSD 116
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 521-619 3.23e-17

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 84.26  E-value: 3.23e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674 521 EVWTWGKGKEGQLGHGDVLPRLQPLCVKCLDGkeVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHsefPTTVPRLS-- 598
Cdd:COG5184  169 TVWCWGANSYGQLGDGTTTDRPTPVQVGGLSG--VVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGD---GTTTDRATpv 243

                         90       100
                 ....*....|....*....|.
gi 189181674 599 KVSSENGVWSVAAGQDYSLFL 619
Cdd:COG5184  244 QVAGLTGVVAIAAGGSHTCAL 264
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 521-619 1.01e-16

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 82.72  E-value: 1.01e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674 521 EVWTWGKGKEGQLGHGDVLPRLQPlcVKCLDG-KEVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSefpTTVPRLS- 598
Cdd:COG5184  118 TVWCWGDNSSGQLGDGTTTNRLTP--VQVDAGlSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDG---TTTDRPTp 192

                         90       100
                 ....*....|....*....|..
gi 189181674 599 -KVSSENGVWSVAAGQDYSLFL 619
Cdd:COG5184  193 vQVGGLSGVVAVAAGGDHSCAL 214
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 521-619 3.45e-16

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 81.18  E-value: 3.45e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189181674 521 EVWTWGKGKEGQLGHGDVLPRLQPLCVKCLDGkeVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLG-----HSEFPTTV- 594
Cdd:COG5184   68 TVWCWGNNSYGQLGDGTTTDRTTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGdgtttNRLTPVQVd 145

                         90       100
                 ....*....|....*....|....*
gi 189181674 595 PRLSKVSsengvwSVAAGQDYSLFL 619
Cdd:COG5184  146 AGLSGVV------AIAAGGYHTCAL 164
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
521-568 9.38e-12

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 60.61  E-value: 9.38e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 189181674  521 EVWTWGKGKEGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGSHSLAL 568
Cdd:pfam00415   3 RVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 556-619 1.40e-09

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 60.76  E-value: 1.40e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189181674 556 IHLEAGGSHSLALTAKSQVYSWGSNTFGQLG-----HSEFPTTVPRLSKVSsengvwSVAAGQDYSLFL 619
Cdd:COG5184    1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGdgtttDRSTPVRVPGLSNVV------AVAAGGDHTCAL 63
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
573-619 4.58e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 52.90  E-value: 4.58e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 189181674  573 QVYSWGSNTFGQLGH-SEFPTTVPRLSKVSSENGVWSVAAGQDYSLFL 619
Cdd:pfam00415   3 RVYTWGRNDYGQLGLgTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
170-216 5.97e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 52.52  E-value: 5.97e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 189181674  170 EIWAWG--TGCQLGLiTTTFPVTKPQKVEHLAGRVVLQVACGAFHSLAL 216
Cdd:pfam00415   3 RVYTWGrnDYGQLGL-GTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
555-584 2.18e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 47.80  E-value: 2.18e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 189181674  555 VIHLEAGGSHSLALTAKSQVYSWGSNTFGQ 584
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
109-165 1.72e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 45.59  E-value: 1.72e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 189181674  109 SGVVYMWGENAAGQCAVANQQYVPEPSPVSISDSetspslaVRILQLACGEEHTLAL 165
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSG-------NKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
93-122 5.21e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 43.57  E-value: 5.21e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 189181674   93 VITVATGSFHSGAVTESGVVYMWGENAAGQ 122
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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