NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|21704174|ref|NP_663559|]
View 

spondin-1 precursor [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Spond_N pfam06468
Spondin_N; This conserved region is found at the in the N-terminal half of several Spondin ...
 205-397 2.26e-108

Spondin_N; This conserved region is found at the in the N-terminal half of several Spondin proteins. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells.


:

Pssm-ID: 461924  Cd Length: 192  Bit Score: 329.55  E-value: 2.26e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174   205 AKYRLTFYGNWSEKTHPKDYPRRANHWSAIIGGSHSKNYVLWEYGGYASEGVKQVAELGSPVKMEEEIRQQSDEVLTVIK 284
Cdd:pfam06468   1 AKYELTFEGLWSRTTHPKDYPLWRPHWSDLIGASHSSDYRLWEYGQYASEGVKQFAEWGSTKKLETELKAKSDSVRTIIK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174   285 AKAQWPawqpvNVRAAPSAEFSVDRTRHLMSFLTMMGPSPDWNVGLSAEDLCTKECGWVQKVVQDLIPWDAGTDSGVTYE 364
Cdd:pfam06468  81 APGIWP-----NGTGKTSAEFRVDRNHHLVSLVSMIGPSPDWFVGVDSLNLCLKNCTWIDSVTLDLYPWDAGTDSGFTYT 155

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 21704174   365 SPNKPTIPQEKIRPLTSLD--HPQSPFYDPEGGSI 397
Cdd:pfam06468 156 SPNFPTIPQEPIRRITSSYpnHPASPFYYPNGKSL 190
Reeler cd08544
Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins; This ...
 43-182 8.29e-34

Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins; This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.


:

Pssm-ID: 260081  Cd Length: 135  Bit Score: 126.34  E-value: 8.29e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174  43 YCSRILRAQ--GTRREGYTEFSLRVEGDpdFYKPGSSYRVTLSAAPPSYFRGFTLIALKENqegdkEEDHAGTFQIIDEE 120
Cdd:cd08544   1 ACTDMPVPGhgGDPQTTPSPYSITVSGN--TYKPGQTYTVTLSGSRPTPFRGFLLQARDAS-----SNEPVGTFQLPPDS 73

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21704174 121 ETQFMSNCPV--AVTESTPRRRTRIQVFWIAPPTGTGCVILKASIVQKRIIYFQDegSLTKKLC 182
Cdd:cd08544  74 GTKLLTCCPSgnAVTHTNNSPKTSVTVTWKAPSNGSGCVTFRATVVQSYDVFWVD--VLSKTLC 135
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 669-720 1.12e-19

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


:

Pssm-ID: 465948  Cd Length: 52  Bit Score: 83.10  E-value: 1.12e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 21704174   669 CELSEWSQWSECNKSCGKGHMIRTRTIQMEPQFGGVPCPETVQRKKCRTRKC 720
Cdd:pfam19028   1 CVVSEWSEWSECSVTCGGGVQTRTRTVIVEPQNGGRPCPELLERRPCNLPPC 52
TSP_1 pfam00090
Thrombospondin type 1 domain;
562-610 1.56e-15

Thrombospondin type 1 domain;


:

Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 70.91  E-value: 1.56e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 21704174   562 TEWGEWDDCSATCGMGMKKRHRMVKMSPADGSMCKAETSQAEKCMMPEC 610
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPGGEPCTGDDIETQACKMDKC 49
TSP_1 pfam00090
Thrombospondin type 1 domain;
618-665 5.67e-15

Thrombospondin type 1 domain;


:

Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 69.37  E-value: 5.67e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 21704174   618 SPWSEWSDCSVTCGKGMRTRQRMLKSLAELG-DCNEDLEQAEKCMLPEC 665
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPGGePCTGDDIETQACKMDKC 49
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 443-494 1.28e-13

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


:

Pssm-ID: 465948  Cd Length: 52  Bit Score: 65.76  E-value: 1.28e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 21704174   443 CIYSNWSPWSACsSSTCEKGKRMRQRMLKAQ-LDLSVPCPDTQDFQPCMGPGC 494
Cdd:pfam19028   1 CVVSEWSEWSEC-SVTCGGGVQTRTRTVIVEpQNGGRPCPELLERRPCNLPPC 52
TSP_1 pfam00090
Thrombospondin type 1 domain;
505-554 4.54e-13

Thrombospondin type 1 domain;


:

Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 63.98  E-value: 4.54e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 21704174   505 SEWITWSPCSVSCGMGMRSRERYVKQFPEDGSVCMLPTEETEKCTVnEEC 554
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPGGEPCTGDDIETQACKM-DKC 49
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 755-807 4.02e-10

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


:

Pssm-ID: 465948  Cd Length: 52  Bit Score: 55.75  E-value: 4.02e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 21704174   755 CRMRPWTAWSECTKLCGGGIQERYMTVKKRFKSSQfTSCKDKKEIRACNVHPC 807
Cdd:pfam19028   1 CVVSEWSEWSECSVTCGGGVQTRTRTVIVEPQNGG-RPCPELLERRPCNLPPC 52
 
Name Accession Description Interval E-value
Spond_N pfam06468
Spondin_N; This conserved region is found at the in the N-terminal half of several Spondin ...
 205-397 2.26e-108

Spondin_N; This conserved region is found at the in the N-terminal half of several Spondin proteins. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells.


Pssm-ID: 461924  Cd Length: 192  Bit Score: 329.55  E-value: 2.26e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174   205 AKYRLTFYGNWSEKTHPKDYPRRANHWSAIIGGSHSKNYVLWEYGGYASEGVKQVAELGSPVKMEEEIRQQSDEVLTVIK 284
Cdd:pfam06468   1 AKYELTFEGLWSRTTHPKDYPLWRPHWSDLIGASHSSDYRLWEYGQYASEGVKQFAEWGSTKKLETELKAKSDSVRTIIK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174   285 AKAQWPawqpvNVRAAPSAEFSVDRTRHLMSFLTMMGPSPDWNVGLSAEDLCTKECGWVQKVVQDLIPWDAGTDSGVTYE 364
Cdd:pfam06468  81 APGIWP-----NGTGKTSAEFRVDRNHHLVSLVSMIGPSPDWFVGVDSLNLCLKNCTWIDSVTLDLYPWDAGTDSGFTYT 155

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 21704174   365 SPNKPTIPQEKIRPLTSLD--HPQSPFYDPEGGSI 397
Cdd:pfam06468 156 SPNFPTIPQEPIRRITSSYpnHPASPFYYPNGKSL 190
NF038123_dom NF038123
spondin domain;
205-408 4.46e-37

spondin domain;


Pssm-ID: 468366  Cd Length: 208  Bit Score: 138.28  E-value: 4.46e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174  205 AKYRLTFYGNWsekthpkdyPRRANHWSAIIGGSHSKNYVLWEYGGYASEGVKQVAELGSPvkmEEEIRQQSDEVLTVIK 284
Cdd:NF038123   1 ATYTVTITNLT---------PPNGQPFSPLVVAAHNGNFDLFEVGEPASEGLERLAEGGDP---SGLLSALADQAGVVVV 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174  285 AKAQWPAWQPVNVrAAPSAEFSVDRTRHLmSFLTMMGPSPDWNVGLSAEDLCTKECGwvQKVVQDLIPWDAGTDSGVTYE 364
Cdd:NF038123  69 AVPGGGPLAPGAS-ESVSFTFEAADGDYL-SLATMLVPSNDWFVGLDSLDLFDLAGG--GTVTLSLNAYDAGTEANDEPE 144

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21704174  365 --------------SPNKPTIPQEKIRPLTS------LDHPQSPFYDPEGGSITQVARVVIERI 408
Cdd:NF038123 145 vnipgpagggegfnGAGPDTDENGVVAIHPGvpgdddADGGISDVLNPNHRFDNPVAKVVITRT 208
Reeler cd08544
Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins; This ...
 43-182 8.29e-34

Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins; This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.


Pssm-ID: 260081  Cd Length: 135  Bit Score: 126.34  E-value: 8.29e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174  43 YCSRILRAQ--GTRREGYTEFSLRVEGDpdFYKPGSSYRVTLSAAPPSYFRGFTLIALKENqegdkEEDHAGTFQIIDEE 120
Cdd:cd08544   1 ACTDMPVPGhgGDPQTTPSPYSITVSGN--TYKPGQTYTVTLSGSRPTPFRGFLLQARDAS-----SNEPVGTFQLPPDS 73

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21704174 121 ETQFMSNCPV--AVTESTPRRRTRIQVFWIAPPTGTGCVILKASIVQKRIIYFQDegSLTKKLC 182
Cdd:cd08544  74 GTKLLTCCPSgnAVTHTNNSPKTSVTVTWKAPSNGSGCVTFRATVVQSYDVFWVD--VLSKTLC 135
Reeler pfam02014
Reeler domain;
64-171 2.65e-29

Reeler domain;


Pssm-ID: 460411  Cd Length: 130  Bit Score: 113.22  E-value: 2.65e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174    64 RVEGDPDFYKPGSSYRVTLSAAPPS-YFRGFTLIALKENqegDKEEDHAGTFQIIDEEETQFMSNCPV---AVTESTPRR 139
Cdd:pfam02014  21 TITVSSTSYRPGETITVTLSGASGGpSFKGFLLQARDAD---SGDPDPVGSFSLPDDADTKFLLDCSGkgnAVTHSNTNK 97

                          90       100       110
                  ....*....|....*....|....*....|..
gi 21704174   140 RTRIQVFWIAPPTGTGCVILKASIVQKRIIYF 171
Cdd:pfam02014  98 KSSVTVTWTAPASGSGCVVFRATVVQNYDTFW 129
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 669-720 1.12e-19

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 83.10  E-value: 1.12e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 21704174   669 CELSEWSQWSECNKSCGKGHMIRTRTIQMEPQFGGVPCPETVQRKKCRTRKC 720
Cdd:pfam19028   1 CVVSEWSEWSECSVTCGGGVQTRTRTVIVEPQNGGRPCPELLERRPCNLPPC 52
TSP_1 pfam00090
Thrombospondin type 1 domain;
562-610 1.56e-15

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 70.91  E-value: 1.56e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 21704174   562 TEWGEWDDCSATCGMGMKKRHRMVKMSPADGSMCKAETSQAEKCMMPEC 610
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPGGEPCTGDDIETQACKMDKC 49
TSP_1 pfam00090
Thrombospondin type 1 domain;
618-665 5.67e-15

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 69.37  E-value: 5.67e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 21704174   618 SPWSEWSDCSVTCGKGMRTRQRMLKSLAELG-DCNEDLEQAEKCMLPEC 665
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPGGePCTGDDIETQACKMDKC 49
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 443-494 1.28e-13

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 65.76  E-value: 1.28e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 21704174   443 CIYSNWSPWSACsSSTCEKGKRMRQRMLKAQ-LDLSVPCPDTQDFQPCMGPGC 494
Cdd:pfam19028   1 CVVSEWSEWSEC-SVTCGGGVQTRTRTVIVEpQNGGRPCPELLERRPCNLPPC 52
TSP_1 pfam00090
Thrombospondin type 1 domain;
505-554 4.54e-13

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 63.98  E-value: 4.54e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 21704174   505 SEWITWSPCSVSCGMGMRSRERYVKQFPEDGSVCMLPTEETEKCTVnEEC 554
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPGGEPCTGDDIETQACKM-DKC 49
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 618-666 8.89e-11

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 57.60  E-value: 8.89e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 21704174    618 SPWSEWSDCSVTCGKGMRTRQRMLKS---LAELGDCNEDLEQAEKCMLPECP 666
Cdd:smart00209   2 SEWSEWSPCSVTCGGGVQTRTRSCCSpppQNGGGPCTGEDVETRACNEQPCP 53
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 755-807 4.02e-10

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 55.75  E-value: 4.02e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 21704174   755 CRMRPWTAWSECTKLCGGGIQERYMTVKKRFKSSQfTSCKDKKEIRACNVHPC 807
Cdd:pfam19028   1 CVVSEWSEWSECSVTCGGGVQTRTRTVIVEPQNGG-RPCPELLERRPCNLPPC 52
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 504-552 8.84e-09

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 52.20  E-value: 8.84e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 21704174    504 MSEWITWSPCSVSCGMGMRSRERYVKQFPE--DGSVCMLPTEETEKCTVNE 552
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPqnGGGPCTGEDVETRACNEQP 51
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 561-611 1.13e-08

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 51.82  E-value: 1.13e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 21704174    561 VTEWGEWDDCSATCGMGMKKRHRMVKMSPA--DGSMCKAETSQAEKCMMPECH 611
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPqnGGGPCTGEDVETRACNEQPCP 53
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 672-720 1.10e-07

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 49.12  E-value: 1.10e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 21704174    672 SEWSQWSECNKSCGKGHMIRTRT-IQMEPQFGGVPCP-ETVQRKKCRTRKC 720
Cdd:smart00209   2 SEWSEWSPCSVTCGGGVQTRTRScCSPPPQNGGGPCTgEDVETRACNEQPC 52
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 619-670 1.89e-06

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 51.50  E-value: 1.89e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 21704174  619 PWSEWSDCSVTCGKGMRTRQRmlKSLAElgDCNEDLEqaEKCMLPECPIDCE 670
Cdd:PTZ00441 242 PWDEWTPCSVTCGKGTHSRSR--PILHE--GCTTHMV--EECEEEECPVEPE 287
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 759-807 3.60e-06

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 44.89  E-value: 3.60e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 21704174    759 PWTAWSECTKLCGGGIQERYMTVKKRFKSSQFTSCK-DKKEIRACNVHPC 807
Cdd:smart00209   3 EWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTgEDVETRACNEQPC 52
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 487-561 3.80e-04

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 43.80  E-value: 3.80e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 21704174  487 QPCMGPGCSD-EDGSTCtmSEWITWSPCSVSCGMGMRSRERYVKQfpedgsvcmlpteetEKCTVN--EECSPSSCLV 561
Cdd:PTZ00441 224 KPFIAKVCTEvERTASC--GPWDEWTPCSVTCGKGTHSRSRPILH---------------EGCTTHmvEECEEEECPV 284
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 446-495 7.95e-04

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 37.95  E-value: 7.95e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 21704174    446 SNWSPWSACsSSTCEKGKRMRQRMLKAQLDLSV--PCP-DTQDFQPCMGPGCS 495
Cdd:smart00209   2 SEWSEWSPC-SVTCGGGVQTRTRSCCSPPPQNGggPCTgEDVETRACNEQPCP 53
 
Name Accession Description Interval E-value
Spond_N pfam06468
Spondin_N; This conserved region is found at the in the N-terminal half of several Spondin ...
 205-397 2.26e-108

Spondin_N; This conserved region is found at the in the N-terminal half of several Spondin proteins. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells.


Pssm-ID: 461924  Cd Length: 192  Bit Score: 329.55  E-value: 2.26e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174   205 AKYRLTFYGNWSEKTHPKDYPRRANHWSAIIGGSHSKNYVLWEYGGYASEGVKQVAELGSPVKMEEEIRQQSDEVLTVIK 284
Cdd:pfam06468   1 AKYELTFEGLWSRTTHPKDYPLWRPHWSDLIGASHSSDYRLWEYGQYASEGVKQFAEWGSTKKLETELKAKSDSVRTIIK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174   285 AKAQWPawqpvNVRAAPSAEFSVDRTRHLMSFLTMMGPSPDWNVGLSAEDLCTKECGWVQKVVQDLIPWDAGTDSGVTYE 364
Cdd:pfam06468  81 APGIWP-----NGTGKTSAEFRVDRNHHLVSLVSMIGPSPDWFVGVDSLNLCLKNCTWIDSVTLDLYPWDAGTDSGFTYT 155

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 21704174   365 SPNKPTIPQEKIRPLTSLD--HPQSPFYDPEGGSI 397
Cdd:pfam06468 156 SPNFPTIPQEPIRRITSSYpnHPASPFYYPNGKSL 190
NF038123_dom NF038123
spondin domain;
205-408 4.46e-37

spondin domain;


Pssm-ID: 468366  Cd Length: 208  Bit Score: 138.28  E-value: 4.46e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174  205 AKYRLTFYGNWsekthpkdyPRRANHWSAIIGGSHSKNYVLWEYGGYASEGVKQVAELGSPvkmEEEIRQQSDEVLTVIK 284
Cdd:NF038123   1 ATYTVTITNLT---------PPNGQPFSPLVVAAHNGNFDLFEVGEPASEGLERLAEGGDP---SGLLSALADQAGVVVV 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174  285 AKAQWPAWQPVNVrAAPSAEFSVDRTRHLmSFLTMMGPSPDWNVGLSAEDLCTKECGwvQKVVQDLIPWDAGTDSGVTYE 364
Cdd:NF038123  69 AVPGGGPLAPGAS-ESVSFTFEAADGDYL-SLATMLVPSNDWFVGLDSLDLFDLAGG--GTVTLSLNAYDAGTEANDEPE 144

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21704174  365 --------------SPNKPTIPQEKIRPLTS------LDHPQSPFYDPEGGSITQVARVVIERI 408
Cdd:NF038123 145 vnipgpagggegfnGAGPDTDENGVVAIHPGvpgdddADGGISDVLNPNHRFDNPVAKVVITRT 208
Reeler cd08544
Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins; This ...
 43-182 8.29e-34

Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins; This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.


Pssm-ID: 260081  Cd Length: 135  Bit Score: 126.34  E-value: 8.29e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174  43 YCSRILRAQ--GTRREGYTEFSLRVEGDpdFYKPGSSYRVTLSAAPPSYFRGFTLIALKENqegdkEEDHAGTFQIIDEE 120
Cdd:cd08544   1 ACTDMPVPGhgGDPQTTPSPYSITVSGN--TYKPGQTYTVTLSGSRPTPFRGFLLQARDAS-----SNEPVGTFQLPPDS 73

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21704174 121 ETQFMSNCPV--AVTESTPRRRTRIQVFWIAPPTGTGCVILKASIVQKRIIYFQDegSLTKKLC 182
Cdd:cd08544  74 GTKLLTCCPSgnAVTHTNNSPKTSVTVTWKAPSNGSGCVTFRATVVQSYDVFWVD--VLSKTLC 135
Reeler_cohesin_like cd08523
Domains similar to the eukaryotic reeler domain and bacterial cohesins; This diverse family ...
 61-180 7.73e-30

Domains similar to the eukaryotic reeler domain and bacterial cohesins; This diverse family summarizes a set of distantly related domains, as revealed by structural similarity


Pssm-ID: 260080  Cd Length: 128  Bit Score: 114.69  E-value: 7.73e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174  61 FSLRVEGDpdfYKPGSSYRVTLSAAPP---SYFRGFTLIALKENQEGdkEEDHAGTFQIIDE--EETQFMSN---CPVAV 132
Cdd:cd08523   1 VSLRALGD---VQVGTNLEVTLSIDEPvnfAPEIEFTVNLKSNSDLF--EEFHATAHNIDPScdHGTMIDKNdiaIDVDV 75

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....
gi 21704174 133 TESTPR----RRTRIQVFWIAPPTgTGCVILKASIVQK--RIIYFQDEGSLTKK 180
Cdd:cd08523  76 RRLSFSwtpaQEVRAKVSLRAEPK-AEHVYLSASSEKGdvREIAGTDEGSGEKT 128
Reeler pfam02014
Reeler domain;
64-171 2.65e-29

Reeler domain;


Pssm-ID: 460411  Cd Length: 130  Bit Score: 113.22  E-value: 2.65e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21704174    64 RVEGDPDFYKPGSSYRVTLSAAPPS-YFRGFTLIALKENqegDKEEDHAGTFQIIDEEETQFMSNCPV---AVTESTPRR 139
Cdd:pfam02014  21 TITVSSTSYRPGETITVTLSGASGGpSFKGFLLQARDAD---SGDPDPVGSFSLPDDADTKFLLDCSGkgnAVTHSNTNK 97

                          90       100       110
                  ....*....|....*....|....*....|..
gi 21704174   140 RTRIQVFWIAPPTGTGCVILKASIVQKRIIYF 171
Cdd:pfam02014  98 KSSVTVTWTAPASGSGCVVFRATVVQNYDTFW 129
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 669-720 1.12e-19

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 83.10  E-value: 1.12e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 21704174   669 CELSEWSQWSECNKSCGKGHMIRTRTIQMEPQFGGVPCPETVQRKKCRTRKC 720
Cdd:pfam19028   1 CVVSEWSEWSECSVTCGGGVQTRTRTVIVEPQNGGRPCPELLERRPCNLPPC 52
TSP_1 pfam00090
Thrombospondin type 1 domain;
562-610 1.56e-15

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 70.91  E-value: 1.56e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 21704174   562 TEWGEWDDCSATCGMGMKKRHRMVKMSPADGSMCKAETSQAEKCMMPEC 610
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPGGEPCTGDDIETQACKMDKC 49
TSP_1 pfam00090
Thrombospondin type 1 domain;
618-665 5.67e-15

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 69.37  E-value: 5.67e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 21704174   618 SPWSEWSDCSVTCGKGMRTRQRMLKSLAELG-DCNEDLEQAEKCMLPEC 665
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPGGePCTGDDIETQACKMDKC 49
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 615-665 1.82e-14

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 68.07  E-value: 1.82e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 21704174   615 CLLSPWSEWSDCSVTCGKGMRTRQRMLKSLAELG--DCNEdLEQAEKCMLPEC 665
Cdd:pfam19028   1 CVVSEWSEWSECSVTCGGGVQTRTRTVIVEPQNGgrPCPE-LLERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 559-610 9.45e-14

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 66.15  E-value: 9.45e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 21704174   559 CLVTEWGEWDDCSATCGMGMKKRHRMVKMSPAD-GSMCKaETSQAEKCMMPEC 610
Cdd:pfam19028   1 CVVSEWSEWSECSVTCGGGVQTRTRTVIVEPQNgGRPCP-ELLERRPCNLPPC 52
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 443-494 1.28e-13

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 65.76  E-value: 1.28e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 21704174   443 CIYSNWSPWSACsSSTCEKGKRMRQRMLKAQ-LDLSVPCPDTQDFQPCMGPGC 494
Cdd:pfam19028   1 CVVSEWSEWSEC-SVTCGGGVQTRTRTVIVEpQNGGRPCPELLERRPCNLPPC 52
TSP_1 pfam00090
Thrombospondin type 1 domain;
505-554 4.54e-13

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 63.98  E-value: 4.54e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 21704174   505 SEWITWSPCSVSCGMGMRSRERYVKQFPEDGSVCMLPTEETEKCTVnEEC 554
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFPGGEPCTGDDIETQACKM-DKC 49
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 502-552 6.91e-11

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 58.06  E-value: 6.91e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 21704174   502 CTMSEWITWSPCSVSCGMGMRSRERYVKQFPEDGSVCMLPTEETEKCTVNE 552
Cdd:pfam19028   1 CVVSEWSEWSECSVTCGGGVQTRTRTVIVEPQNGGRPCPELLERRPCNLPP 51
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 618-666 8.89e-11

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 57.60  E-value: 8.89e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 21704174    618 SPWSEWSDCSVTCGKGMRTRQRMLKS---LAELGDCNEDLEQAEKCMLPECP 666
Cdd:smart00209   2 SEWSEWSPCSVTCGGGVQTRTRSCCSpppQNGGGPCTGEDVETRACNEQPCP 53
TSP_1 pfam00090
Thrombospondin type 1 domain;
446-494 9.05e-11

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 57.43  E-value: 9.05e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 21704174   446 SNWSPWSACSSsTCEKGKRMRQRMLKAQLDLSVPCP-DTQDFQPCMGPGC 494
Cdd:pfam00090   1 SPWSPWSPCSV-TCGKGIQVRQRTCKSPFPGGEPCTgDDIETQACKMDKC 49
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 755-807 4.02e-10

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 55.75  E-value: 4.02e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 21704174   755 CRMRPWTAWSECTKLCGGGIQERYMTVKKRFKSSQfTSCKDKKEIRACNVHPC 807
Cdd:pfam19028   1 CVVSEWSEWSECSVTCGGGVQTRTRTVIVEPQNGG-RPCPELLERRPCNLPPC 52
TSP_1 pfam00090
Thrombospondin type 1 domain;
672-720 5.48e-10

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 55.50  E-value: 5.48e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 21704174   672 SEWSQWSECNKSCGKGHMIRTRTIQMEPQfGGVPCPETVQR-KKCRTRKC 720
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFP-GGEPCTGDDIEtQACKMDKC 49
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 504-552 8.84e-09

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 52.20  E-value: 8.84e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 21704174    504 MSEWITWSPCSVSCGMGMRSRERYVKQFPE--DGSVCMLPTEETEKCTVNE 552
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPqnGGGPCTGEDVETRACNEQP 51
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 561-611 1.13e-08

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 51.82  E-value: 1.13e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 21704174    561 VTEWGEWDDCSATCGMGMKKRHRMVKMSPA--DGSMCKAETSQAEKCMMPECH 611
Cdd:smart00209   1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPqnGGGPCTGEDVETRACNEQPCP 53
TSP_1 pfam00090
Thrombospondin type 1 domain;
758-807 1.67e-08

Thrombospondin type 1 domain;


Pssm-ID: 459668 [Multi-domain]  Cd Length: 49  Bit Score: 51.26  E-value: 1.67e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 21704174   758 RPWTAWSECTKLCGGGIQERYMTVKKRFKssQFTSCKDKK-EIRACNVHPC 807
Cdd:pfam00090   1 SPWSPWSPCSVTCGKGIQVRQRTCKSPFP--GGEPCTGDDiETQACKMDKC 49
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 672-720 1.10e-07

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 49.12  E-value: 1.10e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 21704174    672 SEWSQWSECNKSCGKGHMIRTRT-IQMEPQFGGVPCP-ETVQRKKCRTRKC 720
Cdd:smart00209   2 SEWSEWSPCSVTCGGGVQTRTRScCSPPPQNGGGPCTgEDVETRACNEQPC 52
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 619-670 1.89e-06

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 51.50  E-value: 1.89e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 21704174  619 PWSEWSDCSVTCGKGMRTRQRmlKSLAElgDCNEDLEqaEKCMLPECPIDCE 670
Cdd:PTZ00441 242 PWDEWTPCSVTCGKGTHSRSR--PILHE--GCTTHMV--EECEEEECPVEPE 287
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 759-807 3.60e-06

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 44.89  E-value: 3.60e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 21704174    759 PWTAWSECTKLCGGGIQERYMTVKKRFKSSQFTSCK-DKKEIRACNVHPC 807
Cdd:smart00209   3 EWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTgEDVETRACNEQPC 52
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 487-561 3.80e-04

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 43.80  E-value: 3.80e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 21704174  487 QPCMGPGCSD-EDGSTCtmSEWITWSPCSVSCGMGMRSRERYVKQfpedgsvcmlpteetEKCTVN--EECSPSSCLV 561
Cdd:PTZ00441 224 KPFIAKVCTEvERTASC--GPWDEWTPCSVTCGKGTHSRSRPILH---------------EGCTTHmvEECEEEECPV 284
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 446-495 7.95e-04

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 37.95  E-value: 7.95e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 21704174    446 SNWSPWSACsSSTCEKGKRMRQRMLKAQLDLSV--PCP-DTQDFQPCMGPGCS 495
Cdd:smart00209   2 SEWSEWSPC-SVTCGGGVQTRTRSCCSPPPQNGggPCTgEDVETRACNEQPCP 53
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 763-807 8.31e-04

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 38.20  E-value: 8.31e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 21704174   763 WSECTKLCGGGIQERymTVKKRFKSSQFTS----CKDKK---EIRACNVHPC 807
Cdd:pfam19030   6 WGECSVTCGGGVQTR--LVQCVQKGGGSIVpdseCSAQKkppETQSCNLKPC 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH