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Conserved domains on  [gi|115270986|ref|NP_653113|]
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zinc finger CCCH domain-containing protein 11A [Mus musculus]

Protein Classification

zinc finger CCCH domain-containing protein 11( domain architecture ID 12174178)

zinc finger CCCH domain-containing protein 11 such as ZC3H11A, an RNA-binding protein that interacts with purine-rich sequences and is involved in nuclear mRNA export

Gene Ontology:  GO:0008270|GO:0003729
PubMed:  12665246

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH_3 pfam15663
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ...
 1-110 1.44e-83

Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length.


:

Pssm-ID: 464787 [Multi-domain]  Cd Length: 110  Bit Score: 261.24  E-value: 1.44e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115270986    1 MPNQGEDCYFYFYSTCAKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEIDKKRSEIPCYWENQPVGCQKLNC 80
Cdd:pfam15663   1 MENKGDDCYFFYYSTCTKGDSCPFRHCEAALGNETVCTLWQEGRCFRPVCRFRHMEIDKNRKEIPCYWENQPGGCQKPHC 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 115270986   81 AFHHTRSRYVDGLFLPPSKTVLPTVPESQE 110
Cdd:pfam15663  81 AFHHTKPRYVDGLFLPPSKTEVPSANENPE 110
 
Name Accession Description Interval E-value
zf-CCCH_3 pfam15663
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ...
 1-110 1.44e-83

Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length.


Pssm-ID: 464787 [Multi-domain]  Cd Length: 110  Bit Score: 261.24  E-value: 1.44e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115270986    1 MPNQGEDCYFYFYSTCAKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEIDKKRSEIPCYWENQPVGCQKLNC 80
Cdd:pfam15663   1 MENKGDDCYFFYYSTCTKGDSCPFRHCEAALGNETVCTLWQEGRCFRPVCRFRHMEIDKNRKEIPCYWENQPGGCQKPHC 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 115270986   81 AFHHTRSRYVDGLFLPPSKTVLPTVPESQE 110
Cdd:pfam15663  81 AFHHTKPRYVDGLFLPPSKTEVPSANENPE 110
ZnF_C3H1 smart00356
zinc finger;
6-28 6.93e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.53  E-value: 6.93e-03
                           10        20
                   ....*....|....*....|...
gi 115270986     6 EDCYFYFYSTCAKGDSCPFRHCE 28
Cdd:smart00356   5 ELCKFFKRGYCPRGDRCKFAHPL 27
 
Name Accession Description Interval E-value
zf-CCCH_3 pfam15663
Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically ...
 1-110 1.44e-83

Zinc-finger containing family; zf-CCCH_3 family is found in eukaryotes, and is typically between 155 and 169 amino acids in length.


Pssm-ID: 464787 [Multi-domain]  Cd Length: 110  Bit Score: 261.24  E-value: 1.44e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115270986    1 MPNQGEDCYFYFYSTCAKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEIDKKRSEIPCYWENQPVGCQKLNC 80
Cdd:pfam15663   1 MENKGDDCYFFYYSTCTKGDSCPFRHCEAALGNETVCTLWQEGRCFRPVCRFRHMEIDKNRKEIPCYWENQPGGCQKPHC 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 115270986   81 AFHHTRSRYVDGLFLPPSKTVLPTVPESQE 110
Cdd:pfam15663  81 AFHHTKPRYVDGLFLPPSKTEVPSANENPE 110
ZnF_C3H1 smart00356
zinc finger;
6-28 6.93e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.53  E-value: 6.93e-03
                           10        20
                   ....*....|....*....|...
gi 115270986     6 EDCYFYFYSTCAKGDSCPFRHCE 28
Cdd:smart00356   5 ELCKFFKRGYCPRGDRCKFAHPL 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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