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Conserved domains on  [gi|45550808|ref|NP_651217|]
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Glutamyl-tRNA amidotransferase, subunit B [Drosophila melanogaster]

Protein Classification

Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB( domain architecture ID 11414619)

Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB is part of a heterotrimeric complex that forms correctly charged Gln-tRNA(Gln) or Asn-tRNA(Asn) through the transamidation of misacylated Glu-tRNA(Gln) or Asp-tRNA(Asn)

CATH:  1.10.150.380
EC:  6.3.5.-
Gene Symbol:  gatB
Gene Ontology:  GO:0006412|GO:0016874|GO:0005524
PubMed:  27564922
SCOP:  4001495|4003972

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
GatB COG0064
Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit [Translation, ribosomal structure and ...
22-512 2.96e-179

Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit [Translation, ribosomal structure and biogenesis]; Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


:

Pssm-ID: 439834 [Multi-domain]  Cd Length: 477  Bit Score: 512.26  E-value: 2.96e-179
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  22 KWKSVVGLEVHAQIASASKLFSGSGTSFGAPLNSSVAYFDASIPGTLPVLNRKCVESGIKTSLALGCRVNEVSMFDRKHY 101
Cdd:COG0064   2 KYEVVIGLEVHVQLNTKSKIFCGCSTEFGAEPNTNVCPVCLGLPGALPVLNKKAVEYAIKAGLALNCEIAERSKFDRKNY 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 102 FYADLPNGYQITQQRAALANDGKMTFPViTPGKKvyyKTAKLLQLQLEQDSGKSLHDDYLKRSLVDLNRAGLPLMELVFA 181
Cdd:COG0064  82 FYPDLPKGYQISQYDLPICEGGYLEIEV-EDGEE---KRIGITRIHLEEDAGKSIHEGGAGYSLVDYNRAGVPLIEIVSE 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 182 PDLETGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEGD-PLGVRTEVKNIGSVRSISQAITYEINRQLET 260
Cdd:COG0064 158 PDMRSPEEARAYLEKLRSILRYLGVSDGNMEEGSLRCDANVSVRPKGSeELGTRVEIKNLNSFRFVERAIEYEIERQIEL 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 261 VANGGVITNETRNWDAENRRTVAMRDKEVLQDYRFMPEPNLPPLHVnlkpgsmsTEDLlsVAALSEEIPELPEDTRQRLV 340
Cdd:COG0064 238 LESGGKIVQETRLWDEDKGETRSMRSKEEAHDYRYFPEPDLPPLVI--------SDEW--IEEIRATLPELPDAKRERFV 307
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 341 EQHNLNAETAIILVNEPILLDHFLSITRSLSDlPnKVICNFLINDLLTYCNKLNLDVEDCSIKADDLKDILMSLHAELIN 420
Cdd:COG0064 308 EEYGLSEYDARVLTSDKELADYFEAAVKAGAD-P-KLAANWIMGELLRRLNERGLEIEESPVTPEQLAELIKLIDDGTIS 385
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 421 LQAARQLVDLLHNNPKAkVSELIELHSLQQICSPDEIENLCQLAIANQAKAVEQYQKGKAKALFAIAGEVAKLSSQKANM 500
Cdd:COG0064 386 GKIAKEVFEEMLETGGD-PEEIVEEKGLKQVSDEGALEAIVDEVLAANPDAVEDYKAGKEKALGFLVGQVMKATKGKANP 464
                       490
                ....*....|..
gi 45550808 501 KLVVQRLEKLLK 512
Cdd:COG0064 465 KLVNELLKEKLG 476
 
Name Accession Description Interval E-value
GatB COG0064
Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit [Translation, ribosomal structure and ...
22-512 2.96e-179

Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit [Translation, ribosomal structure and biogenesis]; Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439834 [Multi-domain]  Cd Length: 477  Bit Score: 512.26  E-value: 2.96e-179
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  22 KWKSVVGLEVHAQIASASKLFSGSGTSFGAPLNSSVAYFDASIPGTLPVLNRKCVESGIKTSLALGCRVNEVSMFDRKHY 101
Cdd:COG0064   2 KYEVVIGLEVHVQLNTKSKIFCGCSTEFGAEPNTNVCPVCLGLPGALPVLNKKAVEYAIKAGLALNCEIAERSKFDRKNY 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 102 FYADLPNGYQITQQRAALANDGKMTFPViTPGKKvyyKTAKLLQLQLEQDSGKSLHDDYLKRSLVDLNRAGLPLMELVFA 181
Cdd:COG0064  82 FYPDLPKGYQISQYDLPICEGGYLEIEV-EDGEE---KRIGITRIHLEEDAGKSIHEGGAGYSLVDYNRAGVPLIEIVSE 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 182 PDLETGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEGD-PLGVRTEVKNIGSVRSISQAITYEINRQLET 260
Cdd:COG0064 158 PDMRSPEEARAYLEKLRSILRYLGVSDGNMEEGSLRCDANVSVRPKGSeELGTRVEIKNLNSFRFVERAIEYEIERQIEL 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 261 VANGGVITNETRNWDAENRRTVAMRDKEVLQDYRFMPEPNLPPLHVnlkpgsmsTEDLlsVAALSEEIPELPEDTRQRLV 340
Cdd:COG0064 238 LESGGKIVQETRLWDEDKGETRSMRSKEEAHDYRYFPEPDLPPLVI--------SDEW--IEEIRATLPELPDAKRERFV 307
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 341 EQHNLNAETAIILVNEPILLDHFLSITRSLSDlPnKVICNFLINDLLTYCNKLNLDVEDCSIKADDLKDILMSLHAELIN 420
Cdd:COG0064 308 EEYGLSEYDARVLTSDKELADYFEAAVKAGAD-P-KLAANWIMGELLRRLNERGLEIEESPVTPEQLAELIKLIDDGTIS 385
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 421 LQAARQLVDLLHNNPKAkVSELIELHSLQQICSPDEIENLCQLAIANQAKAVEQYQKGKAKALFAIAGEVAKLSSQKANM 500
Cdd:COG0064 386 GKIAKEVFEEMLETGGD-PEEIVEEKGLKQVSDEGALEAIVDEVLAANPDAVEDYKAGKEKALGFLVGQVMKATKGKANP 464
                       490
                ....*....|..
gi 45550808 501 KLVVQRLEKLLK 512
Cdd:COG0064 465 KLVNELLKEKLG 476
gatB PRK05477
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB;
20-511 3.03e-174

Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB;


Pssm-ID: 235489 [Multi-domain]  Cd Length: 474  Bit Score: 499.21  E-value: 3.03e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   20 KRKWKSVVGLEVHAQIASASKLFSGSGTSFGAPLNSSVAYFDASIPGTLPVLNRKCVESGIKTSLALGCRVNEVSMFDRK 99
Cdd:PRK05477   2 MMNFEVVIGLEVHVQLNTKSKIFSGCSTDFGAEPNTNVCPVCLGLPGALPVLNKEAVEYAIKAGLALNCEIAKRSRFDRK 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  100 HYFYADLPNGYQITQQRAALANDGKMTFPVITpgkkvyyKTAKLLQLQLEQDSGKSLHDDYLKRSLVDLNRAGLPLMELV 179
Cdd:PRK05477  82 NYFYPDLPKGYQISQYDEPIAENGYLEIELGE-------KRIGIERIHLEEDAGKSVHDQGAGYSLVDYNRAGVPLIEIV 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  180 FAPDLETGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEG-DPLGVRTEVKNIGSVRSISQAITYEINRQL 258
Cdd:PRK05477 155 SEPDMRSPEEARAYLKKLRSILRYLGISDGNMEEGSLRCDANVSVRPKGqEEFGTRVEIKNLNSFRFVEKAIEYEIERQI 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  259 ETVANGGVITNETRNWDAENRRTVAMRDKEVLQDYRFMPEPNLPPLHVnlkpgsmsTEDLlsVAALSEEIPELPEDTRQR 338
Cdd:PRK05477 235 EILESGGEVVQETRLFDEDKGETRSMRSKEEAHDYRYFPEPDLPPLEI--------SDEW--IEEIRAELPELPDAKRAR 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  339 LVEQHNLNAETAIILVNEPILLDHFLSITRSLSDlpNKVICNFLINDLLTYCNKLNLDVEDCSIKADDLKDILMSLHAEL 418
Cdd:PRK05477 305 FVEEYGLSEYDARVLTSDKELADYFEAVVAAGAD--AKLAANWLMGELLGLLNEEGIEIEESPITPEQLAELIKLIDDGT 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  419 INLQAARQLVDLLHNNPKAkVSELIELHSLQQICSPDEIENLCQLAIANQAKAVEQYQKGKAKALFAIAGEVAKLSSQKA 498
Cdd:PRK05477 383 ISGKIAKEVFEEMLETGGD-PDEIVEEKGLKQISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLVGQVMKATKGKA 461
                        490
                 ....*....|...
gi 45550808  499 NMKLVVQRLEKLL 511
Cdd:PRK05477 462 NPKLVNELLKEKL 474
gatB TIGR00133
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; The heterotrimer GatABC is ...
24-511 1.85e-144

aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 272926 [Multi-domain]  Cd Length: 478  Bit Score: 423.74  E-value: 1.85e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808    24 KSVVGLEVHAQIASASKLFSGSGTSFG-APLNSSVAYFDASIPGTLPVLNRKCVESGIKTSLALGCRVN-EVSMFDRKHY 101
Cdd:TIGR00133   5 EAKIGLEIHVQLNTKTKLFCSCPNSFGsAPPNTNVCPVCLGLPGALPVLNEEAVKKAIKLALALNSQINqPISVFDRKHY 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   102 FYADLPNGYQITQQRAALANDGKMTfpVITPGKKvyyKTAKLLQLQLEQDSGKSLHDDYLKRSLVDLNRAGLPLMELVFA 181
Cdd:TIGR00133  85 FYPDLPKGYQITQQDRPIAEGGKLE--IELDGGE---KRIGIERVHMEEDTGKSQHFGSDVQSLVDFNRSGAPLIEIVTK 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   182 PDLETGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEGDP-LGVRTEVKNIGSVRSISQAITYEINRQLET 260
Cdd:TIGR00133 160 PDINSPKEARAFLKKLRQILRYLGISDGNLEEGSMRCDVNVSIRLKGQEhLGTRVEIKNINSFKGIEKAIKYEIERQVKA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   261 VANGGVITNETRNWDAENRRTVAMRDKEVLQDYRFMPEPNLPPLHVnlkpgsmsTEDLLSvaALSEEIPELPEDTRQRLV 340
Cdd:TIGR00133 240 LIRGEEVVQETRTFDEKSNITVSMRSKETSIDYRYFPEPDLPPINI--------DELLVK--EVAGKLPELPSAKRIRLK 309
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   341 EQHNLNAETAIILVNEPILLDHFLSITRSLSDlpNKVICNFLINDLLTYCNKLNLDVEDCSIKADDLKDILMSLHAELIN 420
Cdd:TIGR00133 310 KEYGLSEQDAKVLTSDLTLADYFEEVVKLIGD--PKLAANWICIELLGVLNKLQISLAECGLKPSDLAELIKLIKEGKIS 387
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   421 LQAARQLVDLLHNNpKAKVSELIELHSLQQICSPDEIENLCQLAIANQAKAVEQYQKGKAKALFAIAGEVAKLSSQKANM 500
Cdd:TIGR00133 388 GKSAKQLIEEMLEN-GGDPSKLIEELGLEQISDEKELIKIIEEVIKENPKEVEKYLSGKERALKFLVGQVMKRTRGRANP 466
                         490
                  ....*....|.
gi 45550808   501 KLVVQRLEKLL 511
Cdd:TIGR00133 467 QLVNEILKEML 477
GatB_N pfam02934
GatB/GatE catalytic domain; This domain is found in the GatB and GatE proteins.
26-306 2.83e-141

GatB/GatE catalytic domain; This domain is found in the GatB and GatE proteins.


Pssm-ID: 460754  Cd Length: 284  Bit Score: 407.92  E-value: 2.83e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808    26 VVGLEVHAQIASASKLFSGSGTSFGAPLNSSVAYFDASIPGTLPVLNRKCVESGIKTSLALGCRVNEVSMFDRKHYFYAD 105
Cdd:pfam02934   2 VIGLEIHVQLNTKTKLFCGCPTEFGAEPNTNVCPVDLGLPGTLPVLNKEAVELAIKAGLALNCEINDESKFDRKNYFYPD 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   106 LPNGYQITQQRAALANDGKMTFPVITPGKKVyyktaKLLQLQLEQDSGKSLHDDYLKRSLVDLNRAGLPLMELVFAPDLE 185
Cdd:pfam02934  82 LPKGYQITQYDLPIAKGGYLEIEVEGGTKRI-----GITRIHLEEDAGKSIHDADSGYSLVDLNRAGVPLIEIVTEPDIR 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   186 TGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEG-DPLGVRTEVKNIGSVRSISQAITYEINRQLETVANG 264
Cdd:pfam02934 157 SPEEARAYLKKLRSILRYLGVSDGNMEEGSLRCDVNVSVRPKGsEELGTRVEIKNLNSFRFVEKAIEYEIERQIELLESG 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 45550808   265 GVITNETRNWDAENRRTVAMRDKEVLQDYRFMPEPNLPPLHV 306
Cdd:pfam02934 237 GKIRQETRGWDEDKGETRSMRSKEEAHDYRYFPEPDLPPIVI 278
GatB_Yqey smart00845
GatB domain; This domain is found in GatB and proteins related to bacterial Yqey. It is about ...
376-511 5.03e-30

GatB domain; This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.


Pssm-ID: 197913 [Multi-domain]  Cd Length: 147  Bit Score: 114.52  E-value: 5.03e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808    376 KVICNFLINDLLTYCNKLNLDVEDCSIKADDLKDILMSLHAELINLQAARQLVDLLHNNPKAkVSELIELHSLQQICSPD 455
Cdd:smart00845  13 KLAANWLLGELLGELNKEGLEIEESPITPEHLAELLKLIDDGTISGKIAKEVLEELLEGGKS-PEEIVEEKGLKQISDEG 91
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 45550808    456 EIENLCQLAIANQAKAVEQYQKGKAKALFAIAGEVAKLSSQKANMKLVVQRLEKLL 511
Cdd:smart00845  92 ELEAIVDEVIAENPDAVEDYRAGKKKALGFLVGQVMKATRGKADPKLVNELLKEKL 147
 
Name Accession Description Interval E-value
GatB COG0064
Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit [Translation, ribosomal structure and ...
22-512 2.96e-179

Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit [Translation, ribosomal structure and biogenesis]; Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439834 [Multi-domain]  Cd Length: 477  Bit Score: 512.26  E-value: 2.96e-179
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  22 KWKSVVGLEVHAQIASASKLFSGSGTSFGAPLNSSVAYFDASIPGTLPVLNRKCVESGIKTSLALGCRVNEVSMFDRKHY 101
Cdd:COG0064   2 KYEVVIGLEVHVQLNTKSKIFCGCSTEFGAEPNTNVCPVCLGLPGALPVLNKKAVEYAIKAGLALNCEIAERSKFDRKNY 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 102 FYADLPNGYQITQQRAALANDGKMTFPViTPGKKvyyKTAKLLQLQLEQDSGKSLHDDYLKRSLVDLNRAGLPLMELVFA 181
Cdd:COG0064  82 FYPDLPKGYQISQYDLPICEGGYLEIEV-EDGEE---KRIGITRIHLEEDAGKSIHEGGAGYSLVDYNRAGVPLIEIVSE 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 182 PDLETGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEGD-PLGVRTEVKNIGSVRSISQAITYEINRQLET 260
Cdd:COG0064 158 PDMRSPEEARAYLEKLRSILRYLGVSDGNMEEGSLRCDANVSVRPKGSeELGTRVEIKNLNSFRFVERAIEYEIERQIEL 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 261 VANGGVITNETRNWDAENRRTVAMRDKEVLQDYRFMPEPNLPPLHVnlkpgsmsTEDLlsVAALSEEIPELPEDTRQRLV 340
Cdd:COG0064 238 LESGGKIVQETRLWDEDKGETRSMRSKEEAHDYRYFPEPDLPPLVI--------SDEW--IEEIRATLPELPDAKRERFV 307
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 341 EQHNLNAETAIILVNEPILLDHFLSITRSLSDlPnKVICNFLINDLLTYCNKLNLDVEDCSIKADDLKDILMSLHAELIN 420
Cdd:COG0064 308 EEYGLSEYDARVLTSDKELADYFEAAVKAGAD-P-KLAANWIMGELLRRLNERGLEIEESPVTPEQLAELIKLIDDGTIS 385
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 421 LQAARQLVDLLHNNPKAkVSELIELHSLQQICSPDEIENLCQLAIANQAKAVEQYQKGKAKALFAIAGEVAKLSSQKANM 500
Cdd:COG0064 386 GKIAKEVFEEMLETGGD-PEEIVEEKGLKQVSDEGALEAIVDEVLAANPDAVEDYKAGKEKALGFLVGQVMKATKGKANP 464
                       490
                ....*....|..
gi 45550808 501 KLVVQRLEKLLK 512
Cdd:COG0064 465 KLVNELLKEKLG 476
gatB PRK05477
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB;
20-511 3.03e-174

Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB;


Pssm-ID: 235489 [Multi-domain]  Cd Length: 474  Bit Score: 499.21  E-value: 3.03e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   20 KRKWKSVVGLEVHAQIASASKLFSGSGTSFGAPLNSSVAYFDASIPGTLPVLNRKCVESGIKTSLALGCRVNEVSMFDRK 99
Cdd:PRK05477   2 MMNFEVVIGLEVHVQLNTKSKIFSGCSTDFGAEPNTNVCPVCLGLPGALPVLNKEAVEYAIKAGLALNCEIAKRSRFDRK 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  100 HYFYADLPNGYQITQQRAALANDGKMTFPVITpgkkvyyKTAKLLQLQLEQDSGKSLHDDYLKRSLVDLNRAGLPLMELV 179
Cdd:PRK05477  82 NYFYPDLPKGYQISQYDEPIAENGYLEIELGE-------KRIGIERIHLEEDAGKSVHDQGAGYSLVDYNRAGVPLIEIV 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  180 FAPDLETGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEG-DPLGVRTEVKNIGSVRSISQAITYEINRQL 258
Cdd:PRK05477 155 SEPDMRSPEEARAYLKKLRSILRYLGISDGNMEEGSLRCDANVSVRPKGqEEFGTRVEIKNLNSFRFVEKAIEYEIERQI 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  259 ETVANGGVITNETRNWDAENRRTVAMRDKEVLQDYRFMPEPNLPPLHVnlkpgsmsTEDLlsVAALSEEIPELPEDTRQR 338
Cdd:PRK05477 235 EILESGGEVVQETRLFDEDKGETRSMRSKEEAHDYRYFPEPDLPPLEI--------SDEW--IEEIRAELPELPDAKRAR 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  339 LVEQHNLNAETAIILVNEPILLDHFLSITRSLSDlpNKVICNFLINDLLTYCNKLNLDVEDCSIKADDLKDILMSLHAEL 418
Cdd:PRK05477 305 FVEEYGLSEYDARVLTSDKELADYFEAVVAAGAD--AKLAANWLMGELLGLLNEEGIEIEESPITPEQLAELIKLIDDGT 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  419 INLQAARQLVDLLHNNPKAkVSELIELHSLQQICSPDEIENLCQLAIANQAKAVEQYQKGKAKALFAIAGEVAKLSSQKA 498
Cdd:PRK05477 383 ISGKIAKEVFEEMLETGGD-PDEIVEEKGLKQISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLVGQVMKATKGKA 461
                        490
                 ....*....|...
gi 45550808  499 NMKLVVQRLEKLL 511
Cdd:PRK05477 462 NPKLVNELLKEKL 474
gatB TIGR00133
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; The heterotrimer GatABC is ...
24-511 1.85e-144

aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 272926 [Multi-domain]  Cd Length: 478  Bit Score: 423.74  E-value: 1.85e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808    24 KSVVGLEVHAQIASASKLFSGSGTSFG-APLNSSVAYFDASIPGTLPVLNRKCVESGIKTSLALGCRVN-EVSMFDRKHY 101
Cdd:TIGR00133   5 EAKIGLEIHVQLNTKTKLFCSCPNSFGsAPPNTNVCPVCLGLPGALPVLNEEAVKKAIKLALALNSQINqPISVFDRKHY 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   102 FYADLPNGYQITQQRAALANDGKMTfpVITPGKKvyyKTAKLLQLQLEQDSGKSLHDDYLKRSLVDLNRAGLPLMELVFA 181
Cdd:TIGR00133  85 FYPDLPKGYQITQQDRPIAEGGKLE--IELDGGE---KRIGIERVHMEEDTGKSQHFGSDVQSLVDFNRSGAPLIEIVTK 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   182 PDLETGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEGDP-LGVRTEVKNIGSVRSISQAITYEINRQLET 260
Cdd:TIGR00133 160 PDINSPKEARAFLKKLRQILRYLGISDGNLEEGSMRCDVNVSIRLKGQEhLGTRVEIKNINSFKGIEKAIKYEIERQVKA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   261 VANGGVITNETRNWDAENRRTVAMRDKEVLQDYRFMPEPNLPPLHVnlkpgsmsTEDLLSvaALSEEIPELPEDTRQRLV 340
Cdd:TIGR00133 240 LIRGEEVVQETRTFDEKSNITVSMRSKETSIDYRYFPEPDLPPINI--------DELLVK--EVAGKLPELPSAKRIRLK 309
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   341 EQHNLNAETAIILVNEPILLDHFLSITRSLSDlpNKVICNFLINDLLTYCNKLNLDVEDCSIKADDLKDILMSLHAELIN 420
Cdd:TIGR00133 310 KEYGLSEQDAKVLTSDLTLADYFEEVVKLIGD--PKLAANWICIELLGVLNKLQISLAECGLKPSDLAELIKLIKEGKIS 387
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   421 LQAARQLVDLLHNNpKAKVSELIELHSLQQICSPDEIENLCQLAIANQAKAVEQYQKGKAKALFAIAGEVAKLSSQKANM 500
Cdd:TIGR00133 388 GKSAKQLIEEMLEN-GGDPSKLIEELGLEQISDEKELIKIIEEVIKENPKEVEKYLSGKERALKFLVGQVMKRTRGRANP 466
                         490
                  ....*....|.
gi 45550808   501 KLVVQRLEKLL 511
Cdd:TIGR00133 467 QLVNEILKEML 477
GatB_N pfam02934
GatB/GatE catalytic domain; This domain is found in the GatB and GatE proteins.
26-306 2.83e-141

GatB/GatE catalytic domain; This domain is found in the GatB and GatE proteins.


Pssm-ID: 460754  Cd Length: 284  Bit Score: 407.92  E-value: 2.83e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808    26 VVGLEVHAQIASASKLFSGSGTSFGAPLNSSVAYFDASIPGTLPVLNRKCVESGIKTSLALGCRVNEVSMFDRKHYFYAD 105
Cdd:pfam02934   2 VIGLEIHVQLNTKTKLFCGCPTEFGAEPNTNVCPVDLGLPGTLPVLNKEAVELAIKAGLALNCEINDESKFDRKNYFYPD 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   106 LPNGYQITQQRAALANDGKMTFPVITPGKKVyyktaKLLQLQLEQDSGKSLHDDYLKRSLVDLNRAGLPLMELVFAPDLE 185
Cdd:pfam02934  82 LPKGYQITQYDLPIAKGGYLEIEVEGGTKRI-----GITRIHLEEDAGKSIHDADSGYSLVDLNRAGVPLIEIVTEPDIR 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   186 TGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEG-DPLGVRTEVKNIGSVRSISQAITYEINRQLETVANG 264
Cdd:pfam02934 157 SPEEARAYLKKLRSILRYLGVSDGNMEEGSLRCDVNVSVRPKGsEELGTRVEIKNLNSFRFVEKAIEYEIERQIELLESG 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 45550808   265 GVITNETRNWDAENRRTVAMRDKEVLQDYRFMPEPNLPPLHV 306
Cdd:pfam02934 237 GKIRQETRGWDEDKGETRSMRSKEEAHDYRYFPEPDLPPIVI 278
PLN02751 PLN02751
glutamyl-tRNA(Gln) amidotransferase
21-510 1.70e-99

glutamyl-tRNA(Gln) amidotransferase


Pssm-ID: 215400 [Multi-domain]  Cd Length: 544  Bit Score: 310.61  E-value: 1.70e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   21 RKWKSVVGLEVHAQIASASKLFSGSGTSFGAPLNSSVAYFDASIPGTLPVLNRKCVESGIKTSLALGCRVNEVSMFDRKH 100
Cdd:PLN02751  59 QDFEAVIGIETHVQLSTLTKAFCSCPYNYGAEPNTTVCPVCMGLPGTLPVLNSKVVEKAVKLGLALNCKISLKSKFDRKQ 138
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  101 YFYADLPNGYQITQQRAALANDGK--MTFPVITPGKkvyYKTAKLLQLQLEQDSGKSLH---DDYLKRS-LVDLNRAGLP 174
Cdd:PLN02751 139 YFYPDLPKGYQISQFDIPIAEGGYvdVDLPVEFGGG---HRRFGITRVHMEEDAGKLLHsgnGSYSQGSaLVDLNRAGVP 215
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  175 LMELVFAPDLETGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEG-DPLGVRTEVKNIGSVRSISQAITYE 253
Cdd:PLN02751 216 LLEIVSEPDMRTGIEAAEYGAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGqEEFGTKVEIKNMNSFSAMSRAIDFE 295
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  254 INRQLETVANGGV--ITNETRNWDAENRRTVAMRDKEVLQDYRFMPEPNLPPLhvnlkpgsMSTEDLlsVAALSEEIPEL 331
Cdd:PLN02751 296 ISRQILLHRQGQGdeIVQETRLWDEGAQKTVTMRKKEGLADYRYFPEPDLPEV--------VLTEEY--VDSIRASMPEL 365
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  332 PEDTRQRLvEQHNLNAETAIILVNEPILLDHFLSITRSLSDLpnKVICNFLINDLLTYCNKLNLDVEDCSIKADDLKDIL 411
Cdd:PLN02751 366 PEAKRRRY-ENMGLSMQDVLFLANDKNVAEFFDATLAKGADA--KLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELI 442
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  412 MSLHAELINLQAARQ-LVDLLHNNPKAKvsELIELHSLQQICSPDEIENLCQLAIANQAKAVEQYQKGKAKALFAIAGEV 490
Cdd:PLN02751 443 ASIKDGTISGKIGKEiLPELLAKGGTVK--GLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTKLQGFFAGQV 520
                        490       500
                 ....*....|....*....|.
gi 45550808  491 AKLSSQKANMKLVVQRL-EKL 510
Cdd:PLN02751 521 MKASKGKANPGLLNKILmEKL 541
GatB_Yqey pfam02637
GatB domain; This domain is found in GatB. It is about 140 amino acid residues long. This ...
361-511 1.83e-35

GatB domain; This domain is found in GatB. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB, which transamidates Glu-tRNA to Gln-tRNA.


Pssm-ID: 396969 [Multi-domain]  Cd Length: 148  Bit Score: 129.60  E-value: 1.83e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808   361 DHFLSITRSLSDlpNKVICNFLINDLLTYCNKLNLDVEDCSIKADDLKDILMSLHAELINLQAARQLVDLLHNNpKAKVS 440
Cdd:pfam02637   1 DFFEEAVKAGAD--PKLAANWLLGELLGYLNKEGLDIDESPLTPEHLAELIKLIDEGTISGKIAKEVLEELLEN-GKSPE 77
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45550808   441 ELIELHSLQQICSPDEIENLCQLAIANQAKAVEQYQKGKAKALFAIAGEVAKLSSQKANMKLVVQRLEKLL 511
Cdd:pfam02637  78 EIVEEKGLKQISDEEELEKIVDEVIAENPKAVEDYKSGKEKALGFLVGQVMKKTRGKADPKLVNELLKEKL 148
GatB_Yqey smart00845
GatB domain; This domain is found in GatB and proteins related to bacterial Yqey. It is about ...
376-511 5.03e-30

GatB domain; This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.


Pssm-ID: 197913 [Multi-domain]  Cd Length: 147  Bit Score: 114.52  E-value: 5.03e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808    376 KVICNFLINDLLTYCNKLNLDVEDCSIKADDLKDILMSLHAELINLQAARQLVDLLHNNPKAkVSELIELHSLQQICSPD 455
Cdd:smart00845  13 KLAANWLLGELLGELNKEGLEIEESPITPEHLAELLKLIDDGTISGKIAKEVLEELLEGGKS-PEEIVEEKGLKQISDEG 91
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 45550808    456 EIENLCQLAIANQAKAVEQYQKGKAKALFAIAGEVAKLSSQKANMKLVVQRLEKLL 511
Cdd:smart00845  92 ELEAIVDEVIAENPDAVEDYRAGKKKALGFLVGQVMKATRGKADPKLVNELLKEKL 147
GatE COG2511
Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain [Translation, ribosomal ...
26-512 7.91e-13

Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442001 [Multi-domain]  Cd Length: 630  Bit Score: 70.98  E-value: 7.91e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  26 VVGLEVHAQIASASKLFSGSGTS--------------------FG-----APLNSSV-------AYFDASI--------P 65
Cdd:COG2511  12 KVGLEIHQQLDTKTKLFCNCPTElrepesdreftrylrptkseLGeidraALEESKKgrkfeylAYPDTTClveadeepP 91
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  66 GTLpvlNRKCVESGIKTSLALGCR-VNEVS-MfdRKhyFYADLPN--GYQITqqrAALANDGKmtfpVITPGKKVYYKTa 141
Cdd:COG2511  92 HEL---NREALEIALAIALLLNMNiVDEVHvM--RK--IVIDGSNtsGFQRT---ALVALGGY----IETEGGKVGIQT- 156
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 142 kllqLQLEQDSGKSLHDDylKRSLV-DLNRAGLPLMELVFAPDLETGEEAASLVKELILILRrlQTCSCKMEEGALRVDA 220
Cdd:COG2511 157 ----ICLEEDAARKIEET--GDGVVySLDRLGIPLVEIATAPDIRSPEQAREVALRIGMLLR--STGKVKRGLGTIRQDV 228
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 221 NISIhqEGdplGVRTEVKNIGSVRSISQAITYEINRQLE-------------------------------------TVAN 263
Cdd:COG2511 229 NVSI--AG---GARVEIKGVQDLDLIPKIVEYEVKRQVNlleirdelrergasvedieivdvtdvfkdtkskvikkALKK 303
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 264 GGVI----------------------------------------TNETRNW--------------------------DAE 277
Cdd:COG2511 304 GGKVlavklpgfagllgreiqpgrrlgteladyakfwgvggifhTDELPNYgiteeevealrealgageedafvivaDEE 383
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 278 NR-----RTVAMRDKE-----------VLQD--YRFM----------PEPNLPPLHVnlkpgsmsTEDLLSVAAlsEEIP 329
Cdd:COG2511 384 EKakkalEAVIERAKEalegvpeetraALPDgtTRYLrplpgaarmyPETDIPPVEI--------DEEELEEAK--KNLP 453
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 330 ELPEDTRQRLVEQHNLNAETAIILVNEPiLLDHFLSITRSLSDLPNkVICNFLINDlLTYCNKLNLDVEdcSIKADDLKD 409
Cdd:COG2511 454 ELPEEKVERLVKEYGLNEELAEQIVDSE-RLDLFEELVEKKGVDPT-LIASTLTST-LTELRREGVDVE--NLTDEHIEE 528
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808 410 ILMSLHAELINLQAARQLVDLLHNNPKAKVSELIELHSLQQIcSPDEIENLCQLAIANQAKAVEqyQKGkAKALFAIAGE 489
Cdd:COG2511 529 VFDLVAEGKIAKEAIEEILEALAENPDLSAEEAVEELGLGGL-SEEEVEEIIDEVVEENADQVK--EKG-MGAFGPLMGE 604
                       650       660
                ....*....|....*....|...
gi 45550808 490 VAKLSSQKANMKLVVQRLEKLLK 512
Cdd:COG2511 605 VMKELRGKADGKLVSEILREKIQ 627
PRK04028 PRK04028
Glu-tRNA(Gln) amidotransferase subunit GatE;
115-512 1.88e-08

Glu-tRNA(Gln) amidotransferase subunit GatE;


Pssm-ID: 235205 [Multi-domain]  Cd Length: 630  Bit Score: 56.75  E-value: 1.88e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  115 QRAAL-ANDGKmtfpVITPGKKVYYKTakllqLQLEQDSGKSL--HDDYLKRSLvdlNRAGLPLMELVFAPDLETGEEAA 191
Cdd:PRK04028 134 QRTALvALGGY----IETSEGKVGIET-----ICLEEDAARKIeeKGDGVVYSL---DRLGIPLIEISTAPDIHSPEQAK 201
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  192 SLVKELILILRrlQTCSCKMEEGALRVDANISIHQegdplGVRTEVKNIGSVRSISQAITYEINRQLE------------ 259
Cdd:PRK04028 202 EVALKIGMLLR--STGKVKRGLGTIRQDVNVSIAG-----GARVEIKGVQKLDLIPKVVEYEVQRQLNllkirdelkerg 274
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  260 ------------------------TVANGGVI----------------------------------------TNETRNW- 274
Cdd:PRK04028 275 asvedeivdvtelfkdtkskiikkALKKGGKVlaiklpgfkgllgreiqpgrrlgteladyakawgvggifhTDELPAYg 354
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  275 -------------------------DAENR-----RTVAMRDKEVLQ-------------DYRFM----------PEPNL 301
Cdd:PRK04028 355 iteeevealrealgagendafilvaDEEEKaekalEAVIERAKEALEgvpeetrgalpdgTTRYLrplpgaarmyPETDI 434
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  302 PPLHVnlkpgsmsTEDLLSVAalSEEIPELPEDTRQRLVEQHNLNAETAIILVNEPiLLDHFLSITRslSDLPNKVICNF 381
Cdd:PRK04028 435 PPIRI--------TEELLEKI--KKNLPELPEEKVERLIKEYGLSEELAEQLAYSE-RLDLFEELVK--KGVDPTLIAST 501
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45550808  382 LINDlLTYCNKLNLDVEdcSIKADDLKDILMSLHAELINLQAARQLVDLLHNNPKAKVSELIELHSLQQIcSPDEIENLC 461
Cdd:PRK04028 502 LENT-LKELRREGVDVE--NITDEHIEEVFKLVSEGKIAKEAIEEILKELAENPGKSAEEAAEELGLKGL-SEEEVEKII 577
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|.
gi 45550808  462 QLAIANQAKAVEqyQKGKaKALFAIAGEVAKLSSQKANMKLVVQRLEKLLK 512
Cdd:PRK04028 578 DEIVEENIDFVK--EKGM-GAFGPLMGEVMAELRGKADGKLVSEILREKLK 625
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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