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Conserved domains on  [gi|21356645|ref|NP_648672|]
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short spindle 2, isoform A [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
676-965 6.58e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 6.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21356645   676 EDQRQGSPPGRLSRRDQTTAISNNADASAsnylTYKKPKEKSLiqrRPQQQEAPLLAEPAPASTLPQPRSlsrPRYISGL 755
Cdd:PHA03247 2650 ERPRDDPAPGRVSRPRRARRLGRAAQASS----PPQRPRRRAA---RPTVGSLTSLADPPPPPPTPEPAP---HALVSAT 2719
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21356645   756 QKFTTVSKATSAGAGLNATPAA-AMPTTVTVPANGNGELKSPmgiksksfhnlssTMSGVGSGALPRPSLGGGLRRPSAQ 834
Cdd:PHA03247 2720 PLPPGPAAARQASPALPAAPAPpAVPAGPATPGGPARPARPP-------------TTAGPPAPAPPAAPAAGPPRRLTRP 2786
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21356645   835 PSKLMSGLRGPTQAQEDDSAvfkVPKLVSGlRAPGLAPKRAGANGLARPSSGYYSLSVKTAPEADTPESLssassrgsly 914
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPAD---PPAAVLA-PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL---------- 2852
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 21356645   915 ghkdSGRTVNGGNVPQQNPQQtfdmQALTSKLTQVTTGATGIPKPSGLRPP 965
Cdd:PHA03247 2853 ----GGSVAPGGDVRRRPPSR----SPAAKPAAPARPPVRRLARPAVSRST 2895
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
676-965 6.58e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 6.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21356645   676 EDQRQGSPPGRLSRRDQTTAISNNADASAsnylTYKKPKEKSLiqrRPQQQEAPLLAEPAPASTLPQPRSlsrPRYISGL 755
Cdd:PHA03247 2650 ERPRDDPAPGRVSRPRRARRLGRAAQASS----PPQRPRRRAA---RPTVGSLTSLADPPPPPPTPEPAP---HALVSAT 2719
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21356645   756 QKFTTVSKATSAGAGLNATPAA-AMPTTVTVPANGNGELKSPmgiksksfhnlssTMSGVGSGALPRPSLGGGLRRPSAQ 834
Cdd:PHA03247 2720 PLPPGPAAARQASPALPAAPAPpAVPAGPATPGGPARPARPP-------------TTAGPPAPAPPAAPAAGPPRRLTRP 2786
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21356645   835 PSKLMSGLRGPTQAQEDDSAvfkVPKLVSGlRAPGLAPKRAGANGLARPSSGYYSLSVKTAPEADTPESLssassrgsly 914
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPAD---PPAAVLA-PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL---------- 2852
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 21356645   915 ghkdSGRTVNGGNVPQQNPQQtfdmQALTSKLTQVTTGATGIPKPSGLRPP 965
Cdd:PHA03247 2853 ----GGSVAPGGDVRRRPPSR----SPAAKPAAPARPPVRRLARPAVSRST 2895
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
676-965 6.58e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 6.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21356645   676 EDQRQGSPPGRLSRRDQTTAISNNADASAsnylTYKKPKEKSLiqrRPQQQEAPLLAEPAPASTLPQPRSlsrPRYISGL 755
Cdd:PHA03247 2650 ERPRDDPAPGRVSRPRRARRLGRAAQASS----PPQRPRRRAA---RPTVGSLTSLADPPPPPPTPEPAP---HALVSAT 2719
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21356645   756 QKFTTVSKATSAGAGLNATPAA-AMPTTVTVPANGNGELKSPmgiksksfhnlssTMSGVGSGALPRPSLGGGLRRPSAQ 834
Cdd:PHA03247 2720 PLPPGPAAARQASPALPAAPAPpAVPAGPATPGGPARPARPP-------------TTAGPPAPAPPAAPAAGPPRRLTRP 2786
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21356645   835 PSKLMSGLRGPTQAQEDDSAvfkVPKLVSGlRAPGLAPKRAGANGLARPSSGYYSLSVKTAPEADTPESLssassrgsly 914
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPAD---PPAAVLA-PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL---------- 2852
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 21356645   915 ghkdSGRTVNGGNVPQQNPQQtfdmQALTSKLTQVTTGATGIPKPSGLRPP 965
Cdd:PHA03247 2853 ----GGSVAPGGDVRRRPPSR----SPAAKPAAPARPPVRRLARPAVSRST 2895
PRK12757 PRK12757
cell division protein FtsN; Provisional
658-749 8.56e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 39.26  E-value: 8.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21356645  658 PQQLEDEQKQLVEDVryEEDQRQgsPPGRLSR---RDQTTAISnnadasasnyltykkpkeKSLIQRRPQQQEAPLLAEP 734
Cdd:PRK12757  77 PTQLTDEQRQLLEQM--QADMRQ--QPTQLSEvpyNEQTPQVP------------------RSTVQIQQQAQQQQPPATT 134
                         90
                 ....*....|....*
gi 21356645  735 APASTLPQPRSLSRP 749
Cdd:PRK12757 135 AQPQPVTPPRQTTAP 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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