|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
7-298 |
6.53e-90 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 276.79 E-value: 6.53e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 7 DPALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHDRTVKI 86
Cdd:COG2319 109 TGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRL 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 87 WEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDDK 166
Cdd:COG2319 189 WDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADG 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 167 SVRIYDVDSGECVRTFTEERAAPRQLAWHPWGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSG 246
Cdd:COG2319 269 TVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASG 348
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 24663767 247 SDDRTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQ 298
Cdd:COG2319 349 SDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWD 400
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
6-297 |
2.35e-88 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 272.94 E-value: 2.35e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 6 RDPALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHDRTVK 85
Cdd:COG2319 66 AAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVR 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 86 IWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDD 165
Cdd:COG2319 146 LWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSAD 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 166 KSVRIYDVDSGECVRTFTEERAAPRQLAWHPWGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLS 245
Cdd:COG2319 226 GTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLAS 305
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 24663767 246 GSDDRTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVW 297
Cdd:COG2319 306 GSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLW 357
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
10-298 |
3.00e-88 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 268.43 E-value: 3.00e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 10 LERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHDRTVKIWEP 89
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 90 KLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVR 169
Cdd:cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 170 IYDVDSGECVRTFTEERAAPRQLAWHPWGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDD 249
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 24663767 250 RTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQ 298
Cdd:cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
6-297 |
1.96e-77 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 244.82 E-value: 1.96e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 6 RDPALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHDRTVK 85
Cdd:COG2319 24 ALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 86 IWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDD 165
Cdd:COG2319 104 LWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDD 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 166 KSVRIYDVDSGECVRTFTEERAAPRQLAWHPWGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLS 245
Cdd:COG2319 184 GTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLAS 263
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 24663767 246 GSDDRTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVW 297
Cdd:COG2319 264 GSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLW 315
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
25-298 |
4.56e-66 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 215.16 E-value: 4.56e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 25 RFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHDRTVKIWEPKLRGVSGEFVAHSKA 104
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 105 VRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDVDSGECVRTFTE 184
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 185 ERAAPRQLAWHPWGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEGRPIY 264
Cdd:COG2319 161 HSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLR 240
|
250 260 270
....*....|....*....|....*....|....
gi 24663767 265 TLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQ 298
Cdd:COG2319 241 TLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWD 274
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
6-254 |
4.19e-51 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 172.90 E-value: 4.19e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 6 RDPALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHDRTVK 85
Cdd:cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 86 IWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDD 165
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 166 KSVRIYDVDSGECVRTFTEeraaprqlawhpwgnmlavalgcnrikifdvsgsqllqlyvvHSAPVNDVAFHPSGHFLLS 245
Cdd:cd00200 241 GTIRVWDLRTGECVQTLSG------------------------------------------HTNSVTSLAWSPDGKRLAS 278
|
....*....
gi 24663767 246 GSDDRTIRI 254
Cdd:cd00200 279 GSADGTIRI 287
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
14-175 |
2.30e-44 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 158.15 E-value: 2.30e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 14 FTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHDRTVKIWEPKLRG 93
Cdd:COG2319 242 LTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGK 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 94 VSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDV 173
Cdd:COG2319 322 LLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDL 401
|
..
gi 24663767 174 DS 175
Cdd:COG2319 402 AT 403
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
6-132 |
2.80e-30 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 120.02 E-value: 2.80e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 6 RDPALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHDRTVK 85
Cdd:COG2319 276 ATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVR 355
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 24663767 86 IWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWRVA 132
Cdd:COG2319 356 LWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLA 402
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
227-300 |
7.04e-19 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 85.85 E-value: 7.04e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24663767 227 HSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQSN 300
Cdd:cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
63-309 |
5.59e-13 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 70.50 E-value: 5.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 63 VNGVAWSPKGNLVASAGHDRTVKIWEPKLRGVSG--------EFVAHSKaVRSVDFDSTGHLMLTASD-DKSAKIWRVAR 133
Cdd:PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGrdihypvvELASRSK-LSGICWNSYIKSQVASSNfEGVVQVWDVAR 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 134 RQFVSSFAQQNNWVRSAKFSP-NGKLVATASDDKSVRIYDVDSGECVRTF-TEERAAPRQLAWHPwGNMLAVALGCNRIK 211
Cdd:PLN00181 565 SQLVTEMKEHEKRVWSIDYSSaDPTLLASGSDDGSVKLWSINQGVSIGTIkTKANICCVQFPSES-GRSLAFGSADHKVY 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 212 IFDVSGSQL-LQLYVVHSAPVNDVAFHPSGHfLLSGSDDRTIRILDL------LEGRPIYTLTGHTDAVNAVAFSRDGDK 284
Cdd:PLN00181 644 YYDLRNPKLpLCTMIGHSKTVSYVRFVDSST-LVSSSTDNTLKLWDLsmsisgINETPLHSFMGHTNVKNFVGLSVSDGY 722
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 24663767 285 FATGGSDRQLLVWQ------------------SNLHTYDASQF 309
Cdd:PLN00181 723 IATGSETNEVFVYHkafpmpvlsykfktidpvSGLEVDDASQF 765
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
155-284 |
5.82e-09 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 56.24 E-value: 5.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 155 NGKLVATASDDKSVRIYDVDSGECVRTFTEERaAPRQLAWHPWGNMLAVA-LGCNRIKIFDVSGSQLLQLYVVHSAPVnD 233
Cdd:COG3391 79 GRRLYVANSGSGRVSVIDLATGKVVATIPVGG-GPRGLAVDPDGGRLYVAdSGNGRVSVIDTATGKVVATIPVGAGPH-G 156
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 24663767 234 VAFHPSGHFLL-SGSDDRTI----RILDLLEGRPIYTLTGHtDAVNAVAFSRDGDK 284
Cdd:COG3391 157 IAVDPDGKRLYvANSGSNTVsvivSVIDTATGKVVATIPVG-GGPVGVAVSPDGRR 211
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
260-297 |
8.46e-09 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 50.77 E-value: 8.46e-09
10 20 30
....*....|....*....|....*....|....*...
gi 24663767 260 GRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVW 297
Cdd:smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
56-88 |
4.65e-08 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 48.85 E-value: 4.65e-08
10 20 30
....*....|....*....|....*....|...
gi 24663767 56 FASHSAPVNGVAWSPKGNLVASAGHDRTVKIWE 88
Cdd:smart00320 8 LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
260-297 |
1.04e-07 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 47.73 E-value: 1.04e-07
10 20 30
....*....|....*....|....*....|....*...
gi 24663767 260 GRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVW 297
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
219-256 |
1.46e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 47.31 E-value: 1.46e-07
10 20 30
....*....|....*....|....*....|....*...
gi 24663767 219 QLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILD 256
Cdd:smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
148-282 |
3.75e-07 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 52.35 E-value: 3.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 148 RSAKFSPNGKLVATASD-DKSVRIY--DVDSGECVRTFTEERAA-PRQLAWHPWGNMLAVALGCNRIKIFDVSGSQLLQl 223
Cdd:COG4946 346 RLPAWSPDGKSIAYFSDaSGEYELYiaPADGSGEPKQLTLGDLGrVFNPVWSPDGKKIAFTDNRGRLWVVDLASGKVRK- 424
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24663767 224 yVVHS---APVNDVAFHPSGHFLL----SGSDDRTIRILDlLEGRPIYTLTGHTDAVNAVAFSRDG 282
Cdd:COG4946 425 -VDTDgygDGISDLAWSPDSKWLAyskpGPNQLSQIFLYD-VETGKTVQLTDGRYDDGSPAFSPDG 488
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
56-88 |
4.68e-07 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 45.80 E-value: 4.68e-07
10 20 30
....*....|....*....|....*....|...
gi 24663767 56 FASHSAPVNGVAWSPKGNLVASAGHDRTVKIWE 88
Cdd:pfam00400 7 LEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
218-256 |
5.42e-07 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 45.80 E-value: 5.42e-07
10 20 30
....*....|....*....|....*....|....*....
gi 24663767 218 SQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILD 256
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
147-194 |
9.43e-07 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 46.50 E-value: 9.43e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 24663767 147 VRSAKFSPNGKLVATASDDKSVRIYDVDSGECVRTFTEERAAPRQLAW 194
Cdd:pfam12894 41 VTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAGSDLITCLGW 88
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
150-232 |
1.19e-06 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 46.12 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 150 AKFSPNGKLVATASDDKSVRIYDVdSGECVRTF--TEERAAPRQLAWHPWGNMLAVALGCNRIKIFDVSGSQLLQLYVVH 227
Cdd:pfam12894 1 MSWCPTMDLIALATEDGELLLHRL-NWQRVWTLspDKEDLEVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAG 79
|
....*
gi 24663767 228 SAPVN 232
Cdd:pfam12894 80 SDLIT 84
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
192-279 |
1.46e-06 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 46.12 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 192 LAWHPWGNMLAVALGCNRIKIFDVSGSQLLQLYV-VHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEGRPIYTLTGHT 270
Cdd:pfam12894 1 MSWCPTMDLIALATEDGELLLHRLNWQRVWTLSPdKEDLEVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAGS 80
|
....*....
gi 24663767 271 DAVNAVAFS 279
Cdd:pfam12894 81 DLITCLGWG 89
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
134-172 |
1.82e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 44.23 E-value: 1.82e-06
10 20 30
....*....|....*....|....*....|....*....
gi 24663767 134 RQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYD 172
Cdd:smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
10-46 |
3.56e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 43.49 E-value: 3.56e-06
10 20 30
....*....|....*....|....*....|....*..
gi 24663767 10 LERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWN 46
Cdd:pfam00400 3 LLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
10-46 |
3.61e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 43.46 E-value: 3.61e-06
10 20 30
....*....|....*....|....*....|....*..
gi 24663767 10 LERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWN 46
Cdd:smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
134-172 |
7.37e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 42.33 E-value: 7.37e-06
10 20 30
....*....|....*....|....*....|....*....
gi 24663767 134 RQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYD 172
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
119-244 |
7.57e-06 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 45.43 E-value: 7.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 119 TASDDKSAKIWRV-----ARRQFVSSFAqqnnWVRSAKFSPNGKLVATASDDKS---VRIYDVDSGEcVRTFTEERAAPR 190
Cdd:COG0823 4 TLSRDGNSDIYVVdldggEPRRLTNSPG----IDTSPAWSPDGRRIAFTSDRGGgpqIYVVDADGGE-PRRLTFGGGYNA 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 24663767 191 QLAWHPWGNMLAVAL---GCNRIKIFDVSGSQLLQLYVVHSAPvndvAFHPSGHFLL 244
Cdd:COG0823 79 SPSWSPDGKRLAFVSrsdGRFDIYVLDLDGGAPRRLTDGPGSP----SWSPDGRRIV 131
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
16-215 |
8.42e-06 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 47.58 E-value: 8.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 16 GHSGGITQLRFGP-DGAQIATSSTDSTVILWNL-------NQAARCIRFASHSAPVNGVAWSPKG-NLVASAGHDRTVKI 86
Cdd:PTZ00421 73 GQEGPIIDVAFNPfDPQKLFTASEDGTIMGWGIpeegltqNISDPIVHLQGHTKKVGIVSFHPSAmNVLASAGADMVVNV 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 87 WEPKlRGVSGEFVA-HSKAVRSVDfdstghlmltasddksakiWRVarrqfvssfaqqnnwvrsakfspNGKLVATASDD 165
Cdd:PTZ00421 153 WDVE-RGKAVEVIKcHSDQITSLE-------------------WNL-----------------------DGSLLCTTSKD 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 24663767 166 KSVRIYDVDSGECVRTFTEERAAPRQLA-WHPWGNmLAVALGCNR-----IKIFDV 215
Cdd:PTZ00421 190 KKLNIIDPRDGTIVSSVEAHASAKSQRClWAKRKD-LIITLGCSKsqqrqIMLWDT 244
|
|
| COG5354 |
COG5354 |
Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]; |
32-287 |
1.44e-05 |
|
Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only];
Pssm-ID: 227657 [Multi-domain] Cd Length: 561 Bit Score: 47.18 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 32 QIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAgHDRTVKIWEPKLRGVSGEFVAHSkaVRSVDFD 111
Cdd:COG5354 4 QFPLDYSAVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSE-HAAGVECWGGPSKAKLVRFRHPD--VKYLDFS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 112 STGHLMLTASD---------------DKSAKIWRVARRQFVSSFAQQNN----WVRSaKFSPNGKLVATASDDkSVRIYD 172
Cdd:COG5354 81 PNEKYLVTWSRepiiepeieispftsKNNVFVWDIASGMIVFSFNGISQpylgWPVL-KFSIDDKYVARVVGS-SLYIHE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 173 VD-----------SGECVRTF--TEERAAPRQLAWHPWGN----MLAV-ALGCNRI----KIFDVSGSQL--------LQ 222
Cdd:COG5354 159 ITdnieehpfknlRPVGILDFsiSPEGNHDELAYWTPEKLnkpaMVRIlSIPKNSVlvtkNLFKVSGVQLkwqvlgkyLL 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24663767 223 LYVVHSAPVNDVAFHPSGHFLLSgsddrtirildlLEGRPIYTLTGHTDAVNAVAFSRDGDKFAT 287
Cdd:COG5354 239 VLVMTHTKSNKSYFGESNLYLLR------------ITERSIPVEKDLKDPVHDFTWEPLSSRFAV 291
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
96-129 |
1.76e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 41.56 E-value: 1.76e-05
10 20 30
....*....|....*....|....*....|....
gi 24663767 96 GEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIW 129
Cdd:pfam00400 5 KTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
65-292 |
1.80e-05 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 45.78 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 65 GVAWSPKGNLVASAGHDRTVKIWEPKlrgvSGEFVAHSKAVRS----VDFDSTGHLMLTasDDKSAKIWRVARRQ-FVSS 139
Cdd:COG4257 21 DVAVDPDGAVWFTDQGGGRIGRLDPA----TGEFTEYPLGGGSgphgIAVDPDGNLWFT--DNGNNRIGRIDPKTgEITT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 140 FAQQNNWVR--SAKFSPNGKLVATASDDKSVRIYDVDSGEcVRTFT--EERAAPRQLAWHPWGNMLAVALGCNRIKIFDV 215
Cdd:COG4257 95 FALPGGGSNphGIAFDPDGNLWFTDQGGNRIGRLDPATGE-VTEFPlpTGGAGPYGIAVDPDGNLWVTDFGANAIGRIDP 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 216 SGSQllqlyvVHSAPVNDVAFHPSGhfLLSGSDDR---------TIRILDLLEGRPI-YTLTGHTDAVNAVAFSRDGDK- 284
Cdd:COG4257 174 DTGT------LTEYALPTPGAGPRG--LAVDPDGNlwvadtgsgRIGRFDPKTGTVTeYPLPGGGARPYGVAVDGDGRVw 245
|
....*...
gi 24663767 285 FATGGSDR 292
Cdd:COG4257 246 FAESGANR 253
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
146-244 |
1.95e-05 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 46.96 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 146 WVRSAKFSPNGKLVATASDDKSVRIYDVDSGEcVRTFTEER--AAPRQLAWHPWGNMLAVAL----GCNRIKIFDVSGSQ 219
Cdd:COG4946 390 RVFNPVWSPDGKKIAFTDNRGRLWVVDLASGK-VRKVDTDGygDGISDLAWSPDSKWLAYSKpgpnQLSQIFLYDVETGK 468
|
90 100
....*....|....*....|....*..
gi 24663767 220 LLQlyvVHSAPVND--VAFHPSGHFLL 244
Cdd:COG4946 469 TVQ---LTDGRYDDgsPAFSPDGKYLY 492
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
97-129 |
2.81e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 40.76 E-value: 2.81e-05
10 20 30
....*....|....*....|....*....|...
gi 24663767 97 EFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIW 129
Cdd:smart00320 7 TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| YvrE |
COG3386 |
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ... |
65-295 |
2.19e-04 |
|
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 442613 [Multi-domain] Cd Length: 266 Bit Score: 42.57 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 65 GVAWSPKGNLVASAGHDRTVKIWEPKLRGVSgEFVAHSKAVRSVDFDSTGHLMLTasdDKSAKIWRV-----ARRQFVSS 139
Cdd:COG3386 12 GPVWDPDGRLYWVDIPGGRIHRYDPDGGAVE-VFAEPSGRPNGLAFDPDGRLLVA---DHGRGLVRFdpadgEVTVLADE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 140 FAQQNNWVRSAKFSPNGKLVATASDDKSV--RIYDVDSGECVRTFTEERAAPRQLAWHPWGNMLAVA-LGCNRIKIFDVS 216
Cdd:COG3386 88 YGKPLNRPNDGVVDPDGRLYFTDMGEYLPtgALYRVDPDGSLRVLADGLTFPNGIAFSPDGRTLYVAdTGAGRIYRFDLD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 217 GS-QLLQLYVVHSAPVND-----VAFHPSGHFLLSGSDDRTIRILDlLEGRPIYTLTGHTDAVNAVAFsrdgdkfatGGS 290
Cdd:COG3386 168 ADgTLGNRRVFADLPDGPggpdgLAVDADGNLWVALWGGGGVVRFD-PDGELLGRIELPERRPTNVAF---------GGP 237
|
....*
gi 24663767 291 DRQLL 295
Cdd:COG3386 238 DLRTL 242
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
238-298 |
3.41e-04 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 42.37 E-value: 3.41e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24663767 238 PSGHFLLS-GSDDRTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQ 298
Cdd:pfam20426 91 PSENFLIScGNWENSFQVISLNDGRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWE 152
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
13-108 |
4.58e-04 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 42.19 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 13 HFTGHSGGITQLRFGPDGAQI-ATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHDRTVKIWEPKL 91
Cdd:PTZ00421 120 HLQGHTKKVGIVSFHPSAMNVlASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD 199
|
90
....*....|....*....
gi 24663767 92 RGV--SGEFVAHSKAVRSV 108
Cdd:PTZ00421 200 GTIvsSVEAHASAKSQRCL 218
|
|
| NHL_TRIM32_like |
cd14961 |
NHL repeat domain of the tripartite motif-containing protein 32 (TRIM32) and related proteins; ... |
98-296 |
6.48e-04 |
|
NHL repeat domain of the tripartite motif-containing protein 32 (TRIM32) and related proteins; The E3 ubiquitin-protein ligase TRIM32 (HT2A) is widely expressed and is responsible for ubiquinating a large variety of targets, including dysbindin (DTNBP1), NPHP7/Glis2, TAp73, and others. TRIM32 promotes disassociation of the plakoglobin-PI3K complex and reduces PI3K-Akt-FoxO signaling. Mutations in TRIM32 have been implemented in the two diverse diseases limb-girdle muscular dystrophy type 2H (LGMD2H) or sarcotubular myopathy (STM) and Bardet-Biedl syndrome type 11 (BBS11). The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271331 [Multi-domain] Cd Length: 273 Bit Score: 41.11 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 98 FVAHSKAVRSVDFDSTGHLMltasddksakiwrvarrQFVSSFAQQNNWVRSA---KFSPNGKLVATASDDKSVRIYDVD 174
Cdd:cd14961 25 VVADDGNKRIQVFDSDGNCL-----------------QQFGPKGDAGQDIRYPldvAVTPDGHIVVTDAGDRSVKVFSFD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 175 sGECVRTFTEERAAPRQLAWHPWGNMLAVALGCNRIKIFDVSG------------SQLLQLYVVHSAPVNDVAF------ 236
Cdd:cd14961 88 -GRLKLFVRKSFSLPWGVAVNPSGEILVTDSEAGKLFVLTVDFklgilkkgqklcSQLCRPRFVAVSRLGAVAVtehlfa 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24663767 237 ----HPSGHFLLSGSDDRTIRILDLLeGRPIYTLTGHTdaVNAVAFSRDGDKFATGGSDRQLLV 296
Cdd:cd14961 167 ngtrSSSTRVKVFSSGGQLLGQIDSF-GLNLVFPSLIC--ASGVAFDSEGNVIVADTGSGAILC 227
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
16-140 |
7.71e-04 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 41.47 E-value: 7.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 16 GHSGGITQLRFGPDGAQI-ATSSTDSTVILW-------NLNQAA--RCIrFASHSAPVNGVAWSPKGN-LVASAGHDRTV 84
Cdd:PTZ00420 72 GHTSSILDLQFNPCFSEIlASGSEDLTIRVWeiphndeSVKEIKdpQCI-LKGHKKKISIIDWNPMNYyIMCSSGFDSFV 150
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 24663767 85 KIWEPKLRGVSGEFVAhSKAVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSSF 140
Cdd:PTZ00420 151 NIWDIENEKRAFQINM-PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205
|
|
| NHL |
cd05819 |
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ... |
65-255 |
1.07e-03 |
|
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.
Pssm-ID: 271320 [Multi-domain] Cd Length: 269 Bit Score: 40.38 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 65 GVAWSPKGNL-VASAGHDRtVKIWEPKLR-----GVSGEFVAHSKAVRSVDFDSTGHLmltasddksakiwrvarrqFVS 138
Cdd:cd05819 59 GVAVDSDGNLyVADTGNHR-IQKFDPDGNflasfGGSGDGDGEFNGPRGIAVDSSGNI-------------------YVA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 139 SFaqQNNWVRsaKFSPNGKLVAT-----------------ASDDK-----------SVRIYDVDsGECVRTFTEERAAPR 190
Cdd:cd05819 119 DT--GNHRIQ--KFDPDGEFLTTfgsggsgpgqfngptgvAVDSDgniyvadtgnhRIQVFDPD-GNFLTTFGSTGTGPG 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24663767 191 QLAwHPW-------GNMLAVALGCNRIKIFDVSGSQLLQL--YVVHSAPVN---DVAFHPSGHFLLSGSDDRTIRIL 255
Cdd:cd05819 194 QFN-YPTgiavdsdGNIYVADSGNNRVQVFDPDGAGFGGNgnFLGSDGQFNrpsGLAVDSDGNLYVADTGNNRIQVF 269
|
|
| NHL_like_3 |
cd14956 |
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ... |
64-252 |
3.25e-03 |
|
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.
Pssm-ID: 271326 [Multi-domain] Cd Length: 274 Bit Score: 38.80 E-value: 3.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 64 NGVAWSPKGNLVASAGHDRTVKIWEP-----KLRGVSGEFVAHSKAVRSVDFDSTGHLmltasddksakiwrvarrqFVS 138
Cdd:cd14956 63 RGLAVDKDGWLYVADYWGDRIQVFTLtgelqTIGGSSGSGPGQFNAPRGVAVDADGNL-------------------YVA 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 139 SFAQQnnwvRSAKFSPNGKLVATASDdksvriYDVDSGEcvrtFTeeraAPRQLAWHPWGNmLAVALGCN-RIKIFDVSG 217
Cdd:cd14956 124 DFGNQ----RIQKFDPDGSFLRQWGG------TGIEPGS----FN----YPRGVAVDPDGT-LYVADTYNdRIQVFDNDG 184
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 24663767 218 SQLLQLYVVHSAP-----VNDVAFHPSGHFLLSGSDDRTI 252
Cdd:cd14956 185 AFLRKWGGRGTGPgqfnyPYGIAIDPDGNVFVADFGNNRI 224
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
115-217 |
3.46e-03 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 37.73 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 115 HLMLTASDDKSAKIWRVARRqfvSSFAQQ----NNWVRSAKFSPNGKLVATASDDKS---VRIYDVDSGEcVRTFTEERA 187
Cdd:COG0823 44 RIAFTSDRGGGPQIYVVDAD---GGEPRRltfgGGYNASPSWSPDGKRLAFVSRSDGrfdIYVLDLDGGA-PRRLTDGPG 119
|
90 100 110
....*....|....*....|....*....|...
gi 24663767 188 APrqlAWHPWGNMLAVA---LGCNRIKIFDVSG 217
Cdd:COG0823 120 SP---SWSPDGRRIVFSsdrGGRPDLYVVDLDG 149
|
|
| YvrE |
COG3386 |
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ... |
55-236 |
4.26e-03 |
|
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway
Pssm-ID: 442613 [Multi-domain] Cd Length: 266 Bit Score: 38.72 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 55 RFASHSAPVNGVAWSPKGNLVAsAGHDRTVKIWEPKlrgvSGEFV-----AHSKAVRSVD--FDSTGHLMLTASDDK--S 125
Cdd:COG3386 43 VFAEPSGRPNGLAFDPDGRLLV-ADHGRGLVRFDPA----DGEVTvladeYGKPLNRPNDgvVDPDGRLYFTDMGEYlpT 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24663767 126 AKIWRVAR----RQFVSSFAQQNnwvrSAKFSPNGK-LVATASDDKSVRIYDVDS------GECVRTFTEERAAPRQLAW 194
Cdd:COG3386 118 GALYRVDPdgslRVLADGLTFPN----GIAFSPDGRtLYVADTGAGRIYRFDLDAdgtlgnRRVFADLPDGPGGPDGLAV 193
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 24663767 195 HPWGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNdVAF 236
Cdd:COG3386 194 DADGNLWVALWGGGGVVRFDPDGELLGRIELPERRPTN-VAF 234
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
227-294 |
8.54e-03 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 38.34 E-value: 8.54e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24663767 227 HSAPVNDVAFHPSG-HFLLSGSDDRTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQL 294
Cdd:PTZ00421 124 HTKKVGIVSFHPSAmNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
175-214 |
9.08e-03 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 33.83 E-value: 9.08e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24663767 175 SGECVRTFTEERAAPRQLAWHPWGNMLAVALGCNRIKIFD 214
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| |
